Citrus Sinensis ID: 042477
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFR1 | 552 | Probable peptide/nitrate | yes | no | 0.972 | 0.842 | 0.605 | 1e-152 | |
| Q9SRI2 | 563 | Putative peptide/nitrate | no | no | 0.974 | 0.827 | 0.570 | 1e-145 | |
| Q0WP01 | 557 | Probable peptide/nitrate | no | no | 0.924 | 0.793 | 0.398 | 5e-88 | |
| Q0WSZ6 | 561 | Probable peptide/nitrate | no | no | 0.937 | 0.798 | 0.401 | 6e-88 | |
| Q8VZE2 | 557 | Probable peptide/nitrate | no | no | 0.895 | 0.768 | 0.402 | 7e-83 | |
| Q8RX67 | 538 | Probable peptide/nitrate | no | no | 0.941 | 0.836 | 0.373 | 5e-79 | |
| Q9C7U1 | 555 | Probable peptide/nitrate | no | no | 0.930 | 0.801 | 0.355 | 4e-78 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.937 | 0.807 | 0.34 | 3e-77 | |
| Q9M331 | 602 | Probable peptide/nitrate | no | no | 0.918 | 0.729 | 0.347 | 2e-74 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.922 | 0.766 | 0.320 | 4e-74 |
| >sp|Q9LFR1|PTR50_ARATH Probable peptide/nitrate transporter At5g14940 OS=Arabidopsis thaliana GN=At5g14940 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/489 (60%), Positives = 355/489 (72%), Gaps = 24/489 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ER+AFKGVASNLVTYLTDV+KMSNS AA TV++W+G T MLPL AP ADSYWDR
Sbjct: 20 IAGIERYAFKGVASNLVTYLTDVVKMSNSRAATTVNTWSGFTFMLPLFSAPFADSYWDRF 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
TILA S +Y +GL+ LT TAFA + S T S FL+ LSL++LGL NPSLQAFG
Sbjct: 80 FTILASSSLYFVGLVGLTFTAFAGSRSTTKTISLY-FLYTSLSLVALGLGVLNPSLQAFG 138
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+D + D + + +N+ KSN K+ FF+WWYFGVC+GSLLG+T+M+YIQDTFGW
Sbjct: 139 ADQLDYDLDHDNDHEPSSENKEVKSNR-KTQFFQWWYFGVCAGSLLGVTVMAYIQDTFGW 197
Query: 181 VIGFAIPTIAMLTST-AFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239
VIGFAIPT +ML F + D LK KPF I++ IK ++ I
Sbjct: 198 VIGFAIPTASMLLLIFLFLCGCGVYVYADPD---LKAKPFQRILEIIK---ERVCGRNKI 251
Query: 240 SPIDKSD--AMELELQE-KPLC------CNDQNKELDDELENPKNVKHAVQNVKILLRLL 290
+ ++ D AMELELQ+ KPLC N K L D+ ++ K ++ VK+LLRLL
Sbjct: 252 TLVNDHDLNAMELELQDQKPLCNCSNTEANTTTKSLPDDHKSCKTGFSGLETVKLLLRLL 311
Query: 291 PIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTV 350
PIWTMLLMFAVIFQQP TFFTKQGM MKRNIG FKIPPATLQS IT+SIILLMP YD +
Sbjct: 312 PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSIILLMPFYDKI 371
Query: 351 LIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA----KPI 406
LIPI + +T + +KGISV +RM IGMFL+ IA+VIAA VE KRL+ SK + P+
Sbjct: 372 LIPIAKKLT--KNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKISKMMKTTPNLDPV 429
Query: 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466
+I WLLP+Y+LLGISDIFTVV MQEFFY+EVPV MRTMGFALYTSVFGVGSF+SA LIS+
Sbjct: 430 SILWLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSFVSAALISI 489
Query: 467 IEFFTSSRA 475
IE +TSSR
Sbjct: 490 IETYTSSRG 498
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SRI2|PTR31_ARATH Putative peptide/nitrate transporter At3g01350 OS=Arabidopsis thaliana GN=At3g01350 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 288/505 (57%), Positives = 356/505 (70%), Gaps = 39/505 (7%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ER+AFKGVASNLVTYLTDV+KMSNS AAKTV++W G TSMLPL APLAD+YWDR
Sbjct: 20 IAGMERYAFKGVASNLVTYLTDVVKMSNSRAAKTVNTWAGFTSMLPLFSAPLADTYWDRF 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
TILA S +Y +GL+ LT TAFA + S T S S FL+ L L+S+GL NPSLQAFG
Sbjct: 80 FTILASSSVYFVGLVGLTWTAFAGSRSATKTIS-SYFLYSSLCLVSIGLGVLNPSLQAFG 138
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+D++ D + +Q K+ FF+ WYFGVC+GSL+G+T+M+YIQDTFGW
Sbjct: 139 ADQLDHDLDKN--FDLSSGDQKDAKATRKTQFFQLWYFGVCTGSLMGVTVMAYIQDTFGW 196
Query: 181 VIGFAIPTIAMLTSTAFF---------SFASRFCKKKSDHEALKNKPFMSIVQAIKVAAS 231
V+GFAIP I + S F + +R KK + PF I++ IK
Sbjct: 197 VLGFAIPGIVIFLSILVFMSGCGIYVYAPGARLKKKTT------TTPFEKILKFIKGRVV 250
Query: 232 KLKNGKAISPIDKSDAMELELQEKPLC-CNDQN--------KELDDELENPKNVKHAVQN 282
K ++ ++ DAMELEL+E+PLC C ++ K L+D+ E+ K V + N
Sbjct: 251 KQRSIYTLADEKDLDAMELELEERPLCKCETEDIETPSTTSKGLEDD-ESSKTVFSGIDN 309
Query: 283 VKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIIL 342
VK+++RL PIW MLLMFAVIFQ P TFFTKQG+ MKRNIGS FKIPPATLQS IT+SIIL
Sbjct: 310 VKLVIRLFPIWMMLLMFAVIFQLPATFFTKQGVTMKRNIGSNFKIPPATLQSTITLSIIL 369
Query: 343 LMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ-- 400
LMPLYD +LIPI + I + GISVM+RM +GMFL+ IA+VIAA VE KRL S++
Sbjct: 370 LMPLYDKILIPITKRIK--KNGTGISVMERMGVGMFLSIIAIVIAAIVERKRLAISQKMK 427
Query: 401 ------AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFG 454
E P++IFWLLP+Y+LLGISDIFTVV MQEFFY+EVPVRMRTMGFALYTSVFG
Sbjct: 428 TLPDYDPETVPLSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGFALYTSVFG 487
Query: 455 VGSFLSALLISVIEFFTSSRA-RQS 478
VGSF+SA LIS++E ++SS RQ+
Sbjct: 488 VGSFVSAALISIVEAYSSSTGDRQN 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 199/499 (39%), Positives = 290/499 (58%), Gaps = 57/499 (11%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
ERFA+ G++SNL+TYLT + S ++AA V++W+G S+LPLL A +ADS+ R TIL
Sbjct: 47 ERFAYYGISSNLITYLTGPLGQSTAAAAANVNAWSGTASLLPLLGAFVADSFLGRFRTIL 106
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANT--TSCSS-----FLFLPLSLISLGLAGYNPSLQ 117
A S +Y++GL LT +A ++ + +SCS F L L++L G+ P +Q
Sbjct: 107 AASALYIVGLGVLTLSAMIPSDCKVSNLLSSCSPRFQVITFFSALYLVALAQGGHKPCVQ 166
Query: 118 AFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT 177
AFGADQ D +E C KS FF WWYFG+C G+L + +++YIQD
Sbjct: 167 AFGADQFDEKEPEE----C----------KAKSSFFNWWYFGMCFGTLTTLWVLNYIQDN 212
Query: 178 FGWVIGFAIPTIAMLTSTAFFSFAS---RFCKKKSDHEALKNKPFMSIVQAIKVAASKLK 234
W +GF IP IAM+ + + RF ++ D PF+ I + VAA K
Sbjct: 213 LSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQS-----PFVRIGN-VYVAAVKNW 266
Query: 235 NGKAISPIDKSDAMELELQEKPLCCNDQNKELD--------DELENPKNVKHAVQNVKIL 286
+ A+ + + L + NK L DELE K+V
Sbjct: 267 SVSALDVAAAEERLGLVSCSSSQQFSFLNKALVAKNGSCSIDELEEAKSV---------- 316
Query: 287 LRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPL 346
LRL PIW L++AV+F Q TFFTKQG M+R+I +KI PATLQS I++SI++ +P+
Sbjct: 317 LRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIFIPI 376
Query: 347 YDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQA----- 401
YD VLIPI + T GI+++QR+ G+FL+ +AMV+AA VE KRL+ +
Sbjct: 377 YDRVLIPIARSFT--HKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDS 434
Query: 402 --EAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 459
P++++WL+P+YVL GI+D+F +V +QEFFY++VP +R++G ALY S+FG+G+FL
Sbjct: 435 PDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFL 494
Query: 460 SALLISVIEFFTSSRARQS 478
S+ +IS+IE TS + S
Sbjct: 495 SSFMISIIEKATSQSGQAS 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 200/498 (40%), Positives = 296/498 (59%), Gaps = 50/498 (10%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
ERFA G+ SNL++YLT + S + AA V++W+G++++LPLL A +AD++ R+ TI+
Sbjct: 46 ERFANYGIGSNLISYLTGPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITII 105
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTSCSSFL----FLPLSLISLGLAGYNPSLQAFG 120
SFIYVLGL LT +AF + T+S SSFL F L L+++G +G+ P +QAFG
Sbjct: 106 IASFIYVLGLAFLTLSAFLIPNNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFG 165
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ D N E N+++S FF WWY +C+G L I ++ YIQ+ W
Sbjct: 166 ADQFDEKNPQE--------------NSDRSSFFNWWYLSMCAGIGLAILVVVYIQENVSW 211
Query: 181 VIGFAIPTIAMLTSTAFFSFAS---RFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGK 237
+GF IP + M+ S F RF K + + E PF I + VA KN +
Sbjct: 212 ALGFGIPCVFMVISLVLFVLGRKSYRFSKTRQEEE---TNPFTRIGRVFFVA---FKNQR 265
Query: 238 AISPIDKSDAMELEL------QEKPLCCNDQNKEL---DDELENPKNVK-HAVQNVKILL 287
++ SD ++EL QE P + NK L +D E K V++ L+
Sbjct: 266 ----LNSSDLCKVELIEANRSQESPEELSFLNKALLVPNDSDEGEVACKSRDVEDATALV 321
Query: 288 RLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLY 347
RL+P+W L +A+ F Q +TFFTKQG+ M+R I +IPPA+LQ I++SI+L +P+Y
Sbjct: 322 RLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVPIY 381
Query: 348 DTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ------- 400
D VL+PI + IT + GI+ ++R+ GM L ++ MV+AA VE+KRL+ +K+
Sbjct: 382 DRVLVPIGRSIT--KDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQP 439
Query: 401 AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLS 460
P++I+WL P+Y+LLG++D+ T+V MQEFFY++VP +R++G A+Y S GVGS LS
Sbjct: 440 KTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLGLAIYLSAMGVGSLLS 499
Query: 461 ALLISVIEFFTSSRARQS 478
+LLI +I+ T A S
Sbjct: 500 SLLIYLIDLATGGDAGNS 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 281/470 (59%), Gaps = 42/470 (8%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
ERFA+ G+ SNL++YLT + S + AA V++W+G+ ++LP+L A +AD++ R+ TI+
Sbjct: 46 ERFAYYGIGSNLISYLTGPLGESTAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTII 105
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTSCSSFL----FLPLSLISLGLAGYNPSLQAFG 120
S IYVLGL LT +AF + T+S SSFL F L L+++G +G+ P +QAFG
Sbjct: 106 ISSLIYVLGLAFLTLSAFLIPNTTEVTSSTSSFLNVLFFFSLYLVAIGQSGHKPCVQAFG 165
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ D + E+ +++S FF WWY + +G I ++ YIQ+ F W
Sbjct: 166 ADQFDEKDSQEK--------------SDRSSFFNWWYLSLSAGICFAILVVVYIQEEFSW 211
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCK-KKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239
GF IP + M+ S F R + K HE N PF I + VA LKN +
Sbjct: 212 AFGFGIPCVFMVISLVLFVSGRRIYRYSKRRHEEEIN-PFTRIGRVFFVA---LKNQR-- 265
Query: 240 SPIDKSD--AMELELQEKPLCCNDQNKEL---DDELENPKNVKHA-VQNVKILLRLLPIW 293
+ SD +ELE P + NK L +D + K + V++ L+RL+P+W
Sbjct: 266 --LSSSDLCKVELEANTSPEKQSFFNKALLVPNDSSQGENASKSSDVEDATALIRLIPVW 323
Query: 294 TMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIP 353
L +A+ + Q +TFFTKQG+ M R I KIPPA+LQ I +SI+L +P+YD V +P
Sbjct: 324 FTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVFIGISIVLFVPIYDRVFVP 383
Query: 354 IIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSK------QAEAK-PI 406
I ++IT + GI+ ++R+ G+ L++I MVIAA VE KRL+ +K Q EA P+
Sbjct: 384 IARLIT--KEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQPEATLPM 441
Query: 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVG 456
+I+WL+P+Y+LLG++D++T+V MQEFFY++VP +R++G ALY S GVG
Sbjct: 442 SIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSALGVG 491
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 276/477 (57%), Gaps = 27/477 (5%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
ERFA+ G+ASNL+ YLT + S ++AA V++W G + LPLL LADSY R TI+
Sbjct: 42 ERFAYFGIASNLIMYLTGPLGESTAAAAANVNAWTGTVAFLPLLGGFLADSYLGRFRTII 101
Query: 65 AFSFIYVLGLMALT-STAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQ 123
S +Y+LGL L+ ST +S + + F L L+++G GYNP ++ FGADQ
Sbjct: 102 ISSSLYILGLGLLSFSTMIPSHQSKDSNQLQETIFFFSLYLVAIGQGGYNPCIKVFGADQ 161
Query: 124 MDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIG 183
D N+ E +KS FF W FG C L + +YIQ+ W +G
Sbjct: 162 FDGNDHKEA--------------RDKSSFFNWLMFGNCISILTTRLVSTYIQENLSWSLG 207
Query: 184 FAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAIS-PI 242
F IP+++ML S F + + ++ KN PF I +V LKN + I
Sbjct: 208 FGIPSVSMLLSLFLFLLGTTSYRFSTERVGKKN-PFARIS---RVFMEALKNRRQPDLDI 263
Query: 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHA-VQNVKILLRLLPIWTMLLMFAV 301
++A E L L + +K+ + + A ++ K +LRL+PIW +++ +
Sbjct: 264 ANANANETLL----LLAHQSSKQFRFLDRAAISCELAEIEEAKAVLRLIPIWITSVVYTI 319
Query: 302 IFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCY 361
+ Q TFFTKQG M R+I +P ATLQS I +S+++ +P+YD +L+P + T
Sbjct: 320 VHAQSPTFFTKQGATMDRSISPGLLVPAATLQSFINLSVVVFIPIYDRLLVPFARSFT-- 377
Query: 362 QFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGIS 421
Q GI+ +QR+ G+FL+ +AMV+AA VETKRLQ ++ + P++++WL+P+YV+ G+S
Sbjct: 378 QNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQAARDELSIPMSVWWLIPQYVIFGVS 437
Query: 422 DIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSRARQS 478
D+FT+V +QEFFY +VP +R++G AL S++G G++LS+ +ISVI+ T+ ++S
Sbjct: 438 DMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMISVIDKITNQYGQRS 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 175/492 (35%), Positives = 274/492 (55%), Gaps = 47/492 (9%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
E+FA+ G+ASNL+TY T+ + S + AA V+ W G + LPL+ +ADS+ R TIL
Sbjct: 51 EKFAYFGIASNLITYFTEALGESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTIL 110
Query: 65 AFSFIYV--LGLMALTSTAFAWAESPANTTSCSS-----FLFLPLSLISLGLAGYNPSLQ 117
S Y+ LGL+ ++T + SC S F L LI+LG G+ L+
Sbjct: 111 LTSSFYIMGLGLLTFSATIPSLCNDQETRESCVSQVKVIIFFCALYLIALGEGGFKVCLR 170
Query: 118 AFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT 177
AFGADQ D + +E + KS +F W YF + G L + +Y+Q+
Sbjct: 171 AFGADQFDEQDPNE--------------SKAKSSYFNWLYFAISIGILTTRLVTNYVQEN 216
Query: 178 FGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNK----PFMSIVQAIKVAASKL 233
W +G+AIP ++M+ + F + + + E + K PF+ I + AA
Sbjct: 217 LSWALGYAIPCLSMMLALFLFLLGIKTYRFSTGGEGRQGKKHDNPFVRIGRVFVAAARNR 276
Query: 234 KNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIW 293
+ +P D + E +K + LD + + + + V+ K +L L+PIW
Sbjct: 277 RQ----TPSDTCLLLPNESTKK-------FRFLDRAVISCDS--YEVEEAKAVLSLIPIW 323
Query: 294 TMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIP 353
L+F ++F Q TFFTKQG M R+I S ++P ATLQ I+++I++ +P+YD + +P
Sbjct: 324 LCSLVFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAATLQCFISLAILVFIPIYDRLFVP 383
Query: 354 IIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ-------AEAKPI 406
I + IT + GI+ +QR+ G+FL+ I+MVIAA VE KRL+ ++ P+
Sbjct: 384 IARSIT--RKPAGITTLQRISTGIFLSIISMVIAALVEMKRLKTARDHGLVDSPKATVPM 441
Query: 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466
++ WL+P+Y+L G+SD+FT+V +QEFFY EVP ++R+MG ALY S+ G+G+FLS+ ++SV
Sbjct: 442 SVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALYLSIIGIGNFLSSFMVSV 501
Query: 467 IEFFTSSRARQS 478
IE TS + S
Sbjct: 502 IEEATSQSGQVS 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 270/500 (54%), Gaps = 52/500 (10%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
ERFAF G+ASNL+T+LT+ + S ++AAK +++W G++ M P+L A LADS R T+L
Sbjct: 29 ERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMFPILGAFLADSILGRFKTVL 88
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQM 124
SFIY+LG++ L + A F+ L ++++G G+ P + F ADQ
Sbjct: 89 LTSFIYLLGIVMLPLSVTVVARRMREKV-----FFMALYVMAVGEGGHKPCVMTFAADQF 143
Query: 125 DNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGF 184
N +E+ K+ FF +WY + S + + + +IQ+ W +GF
Sbjct: 144 GEANAEEK--------------AAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGF 189
Query: 185 AIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI-- 242
+I +++ + F K + PF + Q + A K +
Sbjct: 190 SIIAGSVVIAIVIFLIGI----PKYRKQVPVGSPFTRVAQVMVAALKKWRLSSTRHHYGL 245
Query: 243 --DKSDAMELEL----QEKPLCCNDQNKELD-----DELENPKNVK-------HAVQNVK 284
++ D +LE Q L +Q + LD DE+++ KN + V+ VK
Sbjct: 246 CYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNRNPWRLCTVNQVEEVK 305
Query: 285 ILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLM 344
++LRL+PIW L+MF Q TFF KQG M R IG+ F IPPA QS + V+I++L+
Sbjct: 306 LILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILI 365
Query: 345 PLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQA--- 401
PLYD V +P+++ IT + GI+ +QR+ +G+F+ + MVI VE KRL+ ++
Sbjct: 366 PLYDRVFVPMVRKITNHH--SGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLI 423
Query: 402 ----EAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGS 457
E P++ WLLP+Y+L+GI D+FT+V MQE FY+++P MR++G A++ SV GVGS
Sbjct: 424 DSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGS 483
Query: 458 FLSALLISVIEFFTSSRARQ 477
F+S +IS ++ + S +
Sbjct: 484 FVSTGIISTVQTISKSHGEE 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/492 (34%), Positives = 272/492 (55%), Gaps = 53/492 (10%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
ER ++ G+++NLV YLT ++ A K + W+G+T+++PLL +AD+Y R+ T+L
Sbjct: 54 ERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMPLLGGFVADAYLGRYGTVL 113
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTSCSS-------FLFLPLSLISLGLAGYNPSLQ 117
+ IY++GL+ LT + F + C F+ + LIS+G G+ PSL+
Sbjct: 114 LATTIYLMGLILLTLSWFIPGLKACHEDMCVEPRKAHEIAFFIAIYLISIGTGGHKPSLE 173
Query: 118 AFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT 177
+FGADQ ++ + +E + K +F WW G+C+G L +T++ YI+D
Sbjct: 174 SFGADQFEDGHPEERKM--------------KMSYFNWWNAGLCAGILTAVTVIVYIEDR 219
Query: 178 FGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGK 237
GW + I TI M TS FF F R K + A P ++Q + VAA +N
Sbjct: 220 IGWGVASIILTIVMATS--FFIF--RIGKPFYRYRAPSGSPLTPMLQ-VFVAAIAKRNLP 274
Query: 238 AISPIDKSDAMELELQE----------KPLCCNDQNKELDDELENPKNVKHA-------- 279
P D S EL +E K L D+ ++D EN K K +
Sbjct: 275 C--PSDSSLLHELTNEEYTKGRLLSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVT 332
Query: 280 -VQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNI-GSRFKIPPATLQSAIT 337
V+ VK+L+ ++PIW L F V Q T F KQ + M R+I G+ F +PPA+L S I
Sbjct: 333 KVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIA 392
Query: 338 VSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQR 397
+SII+ + +Y+ +L+P+++ T + +GIS++QR+ +GM + AM+IAA +E KRL
Sbjct: 393 LSIIITVTIYEKLLVPLLRRATGNE--RGISILQRIGVGMVFSLFAMIIAALIEKKRLDY 450
Query: 398 SKQAEAKP---ITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFG 454
+K+ ++ WL P++++LG++D FT+V +QE+FY++VP MR++G A Y SV G
Sbjct: 451 AKEHHMNKTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLG 510
Query: 455 VGSFLSALLISV 466
SF++ LLI+V
Sbjct: 511 AASFVNNLLITV 522
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/486 (32%), Positives = 267/486 (54%), Gaps = 45/486 (9%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
ER ++ G+A+NLV YLT ++ A + V+ W+G+T+++PLL +AD+Y R++T+L
Sbjct: 55 ERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLGGFIADAYLGRYATVL 114
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTSCSS-------FLFLPLSLISLGLAGYNPSLQ 117
+ IY++GL+ LT + F P + C F+ + LIS+G G+ PSL+
Sbjct: 115 VATTIYLMGLVLLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAIYLISIGTGGHKPSLE 174
Query: 118 AFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT 177
+FGADQ D+++ +E + K FF WW +C+G L +T ++YI+D
Sbjct: 175 SFGADQFDDDHVEERKM--------------KMSFFNWWNVSLCAGILTAVTAVAYIEDR 220
Query: 178 FGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGK 237
GW + I T+ M S F F + ++ P I+Q A +K
Sbjct: 221 VGWGVAGIILTVVMAISLIIFFIGKPFYRYRTP----SGSPLTPILQVFVAAIAKRNLPY 276
Query: 238 AISPIDKSDAMELELQEKPLCCNDQNKELDD-----ELENPKNVKH----------AVQN 282
P + + E L C+ ++ + D E +NP ++ V+
Sbjct: 277 PSDPSLLHEVSKTEFTSGRLLCHTEHLKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEE 336
Query: 283 VKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIIL 342
K+++ ++PIW L F + Q TFF KQ + M R+IG F +PPA++ + +++I+
Sbjct: 337 TKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGG-FTVPPASMFTLTALTLII 395
Query: 343 LMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402
+ +Y+ +L+P+++ IT Q +GI+++QR+ GM + I M+IAA VE +RL R+
Sbjct: 396 SLTVYEKLLVPLLRSITRNQ--RGINILQRIGTGMIFSLITMIIAALVEKQRLDRTNNN- 452
Query: 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSAL 462
KP+++ WL P+++++G +D FT+V +QE+FY++VP MR++G A Y SV G SFL+ L
Sbjct: 453 -KPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIGAASFLNNL 511
Query: 463 LISVIE 468
LI+ ++
Sbjct: 512 LITAVD 517
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| 224116474 | 540 | predicted protein [Populus trichocarpa] | 0.968 | 0.857 | 0.673 | 1e-172 | |
| 255552740 | 536 | amino acid permease, putative [Ricinus c | 0.974 | 0.869 | 0.659 | 1e-172 | |
| 359488751 | 533 | PREDICTED: probable peptide/nitrate tran | 0.968 | 0.868 | 0.652 | 1e-169 | |
| 296087733 | 549 | unnamed protein product [Vitis vinifera] | 0.968 | 0.843 | 0.652 | 1e-168 | |
| 224076868 | 540 | predicted protein [Populus trichocarpa] | 0.970 | 0.859 | 0.650 | 1e-168 | |
| 449459494 | 560 | PREDICTED: probable peptide/nitrate tran | 0.979 | 0.835 | 0.612 | 1e-160 | |
| 356571955 | 540 | PREDICTED: probable peptide/nitrate tran | 0.970 | 0.859 | 0.623 | 1e-154 | |
| 356550329 | 540 | PREDICTED: probable peptide/nitrate tran | 0.970 | 0.859 | 0.625 | 1e-153 | |
| 110741844 | 530 | oligopeptide transporter - like protein | 0.976 | 0.881 | 0.602 | 1e-151 | |
| 15242171 | 552 | major facilitator protein [Arabidopsis t | 0.972 | 0.842 | 0.605 | 1e-151 |
| >gi|224116474|ref|XP_002331906.1| predicted protein [Populus trichocarpa] gi|222874578|gb|EEF11709.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 326/484 (67%), Positives = 374/484 (77%), Gaps = 21/484 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ERFAFKGVASNLVTYLTDV+KMSNS+AAKTV++W G TSMLPLL+A LADS WDR+
Sbjct: 20 IAGMERFAFKGVASNLVTYLTDVVKMSNSAAAKTVNNWCGFTSMLPLLVASLADS-WDRY 78
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
STIL SFIYV+GL+ALTSTA +WA P N S SS+LF L LISLG GYNPSLQAFG
Sbjct: 79 STILTSSFIYVVGLVALTSTALSWARHPTNKIS-SSYLFWSLCLISLGQGGYNPSLQAFG 137
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+ NDDE LP T D Q +N KSLFF+WWYFGVC GSL G+T+MSYIQDTFGW
Sbjct: 138 ADQI--ANDDE--LPSTKDEQK---SNKKSLFFQWWYFGVCGGSLAGVTVMSYIQDTFGW 190
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAIS 240
V+GFAIPTIAM S F SR K D +A+ +P IV++IK A SKL N +
Sbjct: 191 VLGFAIPTIAMGASILLFWCGSRIYAYKQD-DAISERPSRDIVRSIKEALSKLMNSRITL 249
Query: 241 PIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFA 300
P + +ELELQEKPLC N N + E E + + V+N K++LRLLPIWTMLLMFA
Sbjct: 250 PNNNPGVVELELQEKPLCQNSGNAKGLKE-EPCSGINYLVENGKVVLRLLPIWTMLLMFA 308
Query: 301 VIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITC 360
VIFQQP TFFTKQGM MKRN+GS FKIPPATLQSAITVSIILLMP YD +LIP ++IT
Sbjct: 309 VIFQQPATFFTKQGMTMKRNVGSSFKIPPATLQSAITVSIILLMPFYDALLIPFTRLIT- 367
Query: 361 YQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA--------KPITIFWLL 412
+ KKGISV QRM IGM L+ IAMVIAA VETKRL+ S++ E P++IFWLL
Sbjct: 368 -RDKKGISVTQRMGIGMVLSIIAMVIAALVETKRLEISRKMEVLDPKLETEVPLSIFWLL 426
Query: 413 PEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472
P+Y+LLGISDIFTVV MQEFFY+EVPVRMRTMG ALYTSVFGVGSFLSALLIS++E+FTS
Sbjct: 427 PQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGIALYTSVFGVGSFLSALLISLVEYFTS 486
Query: 473 SRAR 476
SR +
Sbjct: 487 SRGK 490
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552740|ref|XP_002517413.1| amino acid permease, putative [Ricinus communis] gi|223543424|gb|EEF44955.1| amino acid permease, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 317/481 (65%), Positives = 379/481 (78%), Gaps = 15/481 (3%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ERFAFKGVASNLVTYLTDV+K+SNS+AAKTV++W G TSMLPLL+A LADS WD+H
Sbjct: 20 IAGIERFAFKGVASNLVTYLTDVVKLSNSAAAKTVNNWCGFTSMLPLLVASLADSCWDKH 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
TILA S++YV+GLMALTSTA WA P N S S+FL+ L LIS+G GYNPSLQAFG
Sbjct: 80 PTILASSYLYVVGLMALTSTALTWAWYPPNKRS-STFLYWSLGLISVGQGGYNPSLQAFG 138
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+++ DDE LP T D+ + +N KSLFF+WWYFGVC GSLLG+T+MSYIQDTFGW
Sbjct: 139 ADQLES--DDE--LPSTKDD---RKSNKKSLFFQWWYFGVCGGSLLGVTVMSYIQDTFGW 191
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAIS 240
V+GFAIPTIAM++S F SR K D K + F +VQAIK ASKL N K I
Sbjct: 192 VLGFAIPTIAMISSIVIFCCGSRVYAYKQDLGDDK-RHFRDMVQAIKELASKLGNCKIIL 250
Query: 241 PIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFA 300
P S+ +ELELQE+PLC D + + NP++ + ++N K++LRL+PIWTMLLMFA
Sbjct: 251 PSGNSEVLELELQERPLC-PDNSGSIKSLNSNPRSGTYLLENAKVVLRLVPIWTMLLMFA 309
Query: 301 VIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITC 360
VIFQQP TFFTKQG+ M+R+IGS+ KIPPATLQS+ITVSIILLMPLYDT+ IPI ++IT
Sbjct: 310 VIFQQPATFFTKQGVTMERSIGSKLKIPPATLQSSITVSIILLMPLYDTIFIPITRLIT- 368
Query: 361 YQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ---AEAKPITIFWLLPEYVL 417
+ KKGI+VMQRM IGM L+ IAM+IAA VE KR+ S++ +E P++IFWLLP+Y+L
Sbjct: 369 -RDKKGINVMQRMGIGMVLSIIAMIIAAVVERKRIMISREMPHSETVPLSIFWLLPQYIL 427
Query: 418 LGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSRARQ 477
LGISDIFTVV MQEFFYNEVPVRM+TMG ALYTSVFGVGSF SA LISVIE FTSSR +
Sbjct: 428 LGISDIFTVVGMQEFFYNEVPVRMKTMGIALYTSVFGVGSFFSAFLISVIEAFTSSRGTK 487
Query: 478 S 478
S
Sbjct: 488 S 488
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488751|ref|XP_003633812.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 315/483 (65%), Positives = 369/483 (76%), Gaps = 20/483 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
+AG ERFAFKGV SNLVTYLTDV+KMSNS+AAKTV+SW GLTSML LL+APLADSYW R+
Sbjct: 20 VAGMERFAFKGVVSNLVTYLTDVVKMSNSTAAKTVNSWCGLTSMLALLVAPLADSYWYRY 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
STILA SF+Y++GL+ALTSTA P + TS SSFLF L LISLGL GYNPSLQAFG
Sbjct: 80 STILASSFLYIIGLLALTSTALVGTWIPEDRTSGSSFLFWSLYLISLGLGGYNPSLQAFG 139
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ++ EE LPCT D +N S KSLFF+WWYFG+CSGSLLG+T+MSYIQDT GW
Sbjct: 140 ADQLET----EEDLPCTKDEKNPDS---KSLFFQWWYFGICSGSLLGVTVMSYIQDTSGW 192
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAIS 240
IGFAIPTI M+ S AFFS +RF + D + + K +IVQAIK SK+ N
Sbjct: 193 GIGFAIPTIVMIASIAFFSCGTRFYTYRQDRD-VNWKTLETIVQAIKAITSKMMNCGINL 251
Query: 241 PIDK-SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMF 299
P +K S +ELELQEKPLC ++ D EN K+ + +++K++LRL PIWTMLLMF
Sbjct: 252 PANKSSHVIELELQEKPLC-----RDTKDLAENHKSGIYLPESIKVVLRLFPIWTMLLMF 306
Query: 300 AVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIIT 359
AVIFQQP TFFTKQGM MKRNIG IPPA LQSAITVSII+LMPLYD VLIP ++IT
Sbjct: 307 AVIFQQPATFFTKQGMTMKRNIGRNLLIPPAMLQSAITVSIIVLMPLYDKVLIPFTRLIT 366
Query: 360 CYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRS----KQAEAKPITIFWLLPEY 415
+ +KGI+VMQRM IGM L+ IAMVIAA VE KRL S Q+E P++IFWLLP+Y
Sbjct: 367 --RKEKGINVMQRMGIGMVLSIIAMVIAALVEKKRLSISSKLESQSETVPLSIFWLLPQY 424
Query: 416 VLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSRA 475
++LGI+DIFTVV MQEFFY EVP+RMRTMG ALY+SVFGVGSF+SA LI +IE FTSS
Sbjct: 425 IILGIADIFTVVGMQEFFYGEVPIRMRTMGIALYSSVFGVGSFMSAFLIWLIEIFTSSGG 484
Query: 476 RQS 478
RQ
Sbjct: 485 RQG 487
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087733|emb|CBI34989.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/483 (65%), Positives = 369/483 (76%), Gaps = 20/483 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
+AG ERFAFKGV SNLVTYLTDV+KMSNS+AAKTV+SW GLTSML LL+APLADSYW R+
Sbjct: 20 VAGMERFAFKGVVSNLVTYLTDVVKMSNSTAAKTVNSWCGLTSMLALLVAPLADSYWYRY 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
STILA SF+Y++GL+ALTSTA P + TS SSFLF L LISLGL GYNPSLQAFG
Sbjct: 80 STILASSFLYIIGLLALTSTALVGTWIPEDRTSGSSFLFWSLYLISLGLGGYNPSLQAFG 139
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ++ EE LPCT D +N S KSLFF+WWYFG+CSGSLLG+T+MSYIQDT GW
Sbjct: 140 ADQLET----EEDLPCTKDEKNPDS---KSLFFQWWYFGICSGSLLGVTVMSYIQDTSGW 192
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAIS 240
IGFAIPTI M+ S AFFS +RF + D + + K +IVQAIK SK+ N
Sbjct: 193 GIGFAIPTIVMIASIAFFSCGTRFYTYRQDRD-VNWKTLETIVQAIKAITSKMMNCGINL 251
Query: 241 PIDK-SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMF 299
P +K S +ELELQEKPLC ++ D EN K+ + +++K++LRL PIWTMLLMF
Sbjct: 252 PANKSSHVIELELQEKPLC-----RDTKDLAENHKSGIYLPESIKVVLRLFPIWTMLLMF 306
Query: 300 AVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIIT 359
AVIFQQP TFFTKQGM MKRNIG IPPA LQSAITVSII+LMPLYD VLIP ++IT
Sbjct: 307 AVIFQQPATFFTKQGMTMKRNIGRNLLIPPAMLQSAITVSIIVLMPLYDKVLIPFTRLIT 366
Query: 360 CYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRS----KQAEAKPITIFWLLPEY 415
+ +KGI+VMQRM IGM L+ IAMVIAA VE KRL S Q+E P++IFWLLP+Y
Sbjct: 367 --RKEKGINVMQRMGIGMVLSIIAMVIAALVEKKRLSISSKLESQSETVPLSIFWLLPQY 424
Query: 416 VLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSRA 475
++LGI+DIFTVV MQEFFY EVP+RMRTMG ALY+SVFGVGSF+SA LI +IE FTSS
Sbjct: 425 IILGIADIFTVVGMQEFFYGEVPIRMRTMGIALYSSVFGVGSFMSAFLIWLIEIFTSSGG 484
Query: 476 RQS 478
RQ
Sbjct: 485 RQG 487
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224076868|ref|XP_002305027.1| predicted protein [Populus trichocarpa] gi|222847991|gb|EEE85538.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 317/487 (65%), Positives = 372/487 (76%), Gaps = 23/487 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ERFAFKGVASNLVTYLTDV+ MSNS+AAKTV++W G TSMLPLL+A LADS WDR+
Sbjct: 20 IAGMERFAFKGVASNLVTYLTDVVMMSNSAAAKTVNNWCGFTSMLPLLVASLADS-WDRY 78
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
STIL+ SF+YV+GL+ALTSTA AWA P N S SS+LF L LISLG GYNPSLQAFG
Sbjct: 79 STILSSSFLYVVGLVALTSTALAWARHPTNNIS-SSYLFWSLCLISLGQGGYNPSLQAFG 137
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+ N DDE LPCT D Q +N KSLFF+WWYFGVC GSL G+T+MSYIQDTFGW
Sbjct: 138 ADQIPN--DDE--LPCTKDEQK---SNKKSLFFQWWYFGVCGGSLAGVTVMSYIQDTFGW 190
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAIS 240
+GFAIPTIAM S F SR K D + + + + I +AIK A SKL N +
Sbjct: 191 ALGFAIPTIAMTASILLFWCGSRIYTYKQD-DNISERSSLDIFRAIKGAVSKLMNSRITL 249
Query: 241 PIDKSDAMELELQEKPLCCNDQNKELDDELENP-KNVKHAVQNVKILLRLLPIWTMLLMF 299
+K D ELELQEKPLC N N + +E P ++ + V+N K++LRLLPIW+MLLMF
Sbjct: 250 SSNKPDVAELELQEKPLCQNSGNAK--ALMEKPVGDINYLVENGKVVLRLLPIWSMLLMF 307
Query: 300 AVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIIT 359
AVIFQ P TFFTKQGM MKRN+GS FKIPPATLQS+ITVSIILLMP YD +LIP+ ++IT
Sbjct: 308 AVIFQLPATFFTKQGMTMKRNVGSSFKIPPATLQSSITVSIILLMPFYDALLIPLARLIT 367
Query: 360 CYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA--------KPITIFWL 411
+ +KGISV +RM IGM L+ IAM IAA VETKRL+ ++ E P++IFWL
Sbjct: 368 --RDEKGISVTERMGIGMVLSIIAMAIAALVETKRLEIGQKMEVVDQKMETEVPLSIFWL 425
Query: 412 LPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFT 471
LP+Y+LLGISDIFTVV MQEFFY+EVPVRMRTMG ALYTSVFGVGSFLSALLIS++E+FT
Sbjct: 426 LPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGIALYTSVFGVGSFLSALLISLVEYFT 485
Query: 472 SSRARQS 478
SS +S
Sbjct: 486 SSTGGKS 492
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459494|ref|XP_004147481.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 300/490 (61%), Positives = 363/490 (74%), Gaps = 22/490 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
++G ERF FKGVASNLVTYLTDVMKMSNSSAAKTVSSW G TSMLPL++APLADSYWDR+
Sbjct: 29 VSGMERFVFKGVASNLVTYLTDVMKMSNSSAAKTVSSWCGFTSMLPLVVAPLADSYWDRY 88
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
STIL +F+YVLGL+ALTST A SP NT SSFLF L LISLG GYNPSLQAFG
Sbjct: 89 STILGSAFLYVLGLVALTSTTLARTWSPTNTA--SSFLFSSLYLISLGQGGYNPSLQAFG 146
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+D +DD E+ + + KSLFF+WWYFGVCSGSLLG+T+MSYIQD FGW
Sbjct: 147 ADQLD--HDDAELPTINAKTPSDEKPKKKSLFFQWWYFGVCSGSLLGVTIMSYIQDNFGW 204
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHE--ALKNKPFMSIVQAIKVAASKLKNGKA 238
V+GFAIP AM++S A FS ++ + K D E ++ + F+ +++ K AS+L ++
Sbjct: 205 VLGFAIPMCAMVSSVALFSCGTKIYRYKRDVEEDEVEKRRFVKVMEIFKATASRLMCWRS 264
Query: 239 IS----PIDKS-DAMELELQE-KPLCCNDQNKELDDELEN------PKNVKHAVQNVKIL 286
+ I KS D +ELELQE KPLC + + + P+ VK++
Sbjct: 265 VVTTTLSIHKSEDDVELELQETKPLCHENSGAIMKAMVNKNNTTIIPRERVCVPHKVKLV 324
Query: 287 LRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPL 346
LRLLPIWTMLLMFAVIFQQP TFFTKQGM M+R IG+ FKIPPATLQSAIT+SIILLMPL
Sbjct: 325 LRLLPIWTMLLMFAVIFQQPATFFTKQGMTMERTIGADFKIPPATLQSAITISIILLMPL 384
Query: 347 YDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPI 406
YD VLIPI ++ T KKGI+VMQRM IGMFL++IAM++AA +E KRL +K A + +
Sbjct: 385 YDKVLIPITRLFT--GTKKGITVMQRMGIGMFLSTIAMILAALIEAKRLTMTKNASS--L 440
Query: 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466
+I WLLP+Y++LGISDIFTVV MQEFFY+EVPV MRT GFALY SVFGVGSF SA++ISV
Sbjct: 441 SILWLLPQYIILGISDIFTVVGMQEFFYSEVPVSMRTTGFALYNSVFGVGSFCSAIMISV 500
Query: 467 IEFFTSSRAR 476
+E TS +
Sbjct: 501 VELLTSVEGK 510
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571955|ref|XP_003554136.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/483 (62%), Positives = 372/483 (77%), Gaps = 19/483 (3%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ERFAFKGVASNLVTYLTDV+ +SNSSAAK V+SW G TS++PLL+AP+AD+YW ++
Sbjct: 20 IAGIERFAFKGVASNLVTYLTDVVNLSNSSAAKMVNSWVGFTSIMPLLVAPIADAYWHKY 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
STI+ SF+Y +GL ALT+TA A + N T SFL L L LISLG GYNPSLQAFG
Sbjct: 80 STIMVSSFLYFVGLAALTTTALARSWHHKNRTMSFSFLSLSLYLISLGQGGYNPSLQAFG 139
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+ +EE LPC+ ++ KS N K+LFF+WWYFGVCSGSLLG+T+MSYIQDTFGW
Sbjct: 140 ADQL----GEEEELPCSKED---KSCNTKTLFFQWWYFGVCSGSLLGVTVMSYIQDTFGW 192
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALK-NKPFMSIVQAIKVAASKLKNGKAI 239
V+GFAIP I+M+ S FS S K +H+ L+ KP M+I QAI+ +A + + +
Sbjct: 193 VLGFAIPAISMILSILIFSGGSPIYLYK-EHDVLQAKKPIMNIFQAIRASALRCFHCEIT 251
Query: 240 SPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMF 299
P DKS+ +ELELQEKPL C ++ + + D ++PK+ + + N K+++RLLPIWTMLLMF
Sbjct: 252 LPNDKSEVVELELQEKPL-CPEKLETVKDLNKDPKSGMYLLANAKVMVRLLPIWTMLLMF 310
Query: 300 AVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIIT 359
AVIFQQP TFFTKQGM MKRNIG+ FKIPPATLQSAIT+SIILLMPLYD + IP+ Q+IT
Sbjct: 311 AVIFQQPATFFTKQGMTMKRNIGADFKIPPATLQSAITLSIILLMPLYDKIFIPMTQVIT 370
Query: 360 CYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSK-------QAEAKPITIFWLL 412
+ KGISVMQRM IGM L+ IAM+IAA VE +RL + Q+E P++IFWLL
Sbjct: 371 --RQDKGISVMQRMGIGMVLSIIAMIIAALVEMRRLDIGRQMRSAGSQSETVPLSIFWLL 428
Query: 413 PEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472
P+Y+LLGISDIFTVV MQEFFY EVP MRTMG ALYTSVFGVGSF+SALLI+++E +TS
Sbjct: 429 PQYILLGISDIFTVVGMQEFFYGEVPRNMRTMGIALYTSVFGVGSFVSALLITLVEVYTS 488
Query: 473 SRA 475
S+
Sbjct: 489 SKG 491
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550329|ref|XP_003543540.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/483 (62%), Positives = 374/483 (77%), Gaps = 19/483 (3%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ERFAFKGVASNLVTYLTDV+ +SNSSAAK V+SW G TS++PLL+AP+AD+YW ++
Sbjct: 20 IAGIERFAFKGVASNLVTYLTDVVNLSNSSAAKMVNSWVGFTSIMPLLVAPIADAYWRKY 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
STI+ SF+Y +GL ALT+TA A + N + SSFL L L LISLG GYNPSLQAFG
Sbjct: 80 STIMVSSFLYFVGLAALTTTALARSWHHKNRSMSSSFLSLSLYLISLGQGGYNPSLQAFG 139
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+ +EE LPC+ ++ KS N K+LFF+WWYFGVCSGSLLG+T+MSYIQDTFGW
Sbjct: 140 ADQL----GEEEELPCSKED---KSCNKKTLFFQWWYFGVCSGSLLGVTVMSYIQDTFGW 192
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALK-NKPFMSIVQAIKVAASKLKNGKAI 239
V+GFAIP I+M+ S FS S K +H+ L+ KP +I QA+K +A + + +
Sbjct: 193 VLGFAIPAISMILSILIFSGGSPIYLYK-EHDVLQAKKPLRNIFQAVKASALRCFHCEIT 251
Query: 240 SPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMF 299
P DK++ +ELELQEKPL C ++ + L D ++PK + + N K+++RLLPIWTMLLMF
Sbjct: 252 LPNDKTEVVELELQEKPL-CPEKLESLKDLNKDPKGGMYLLANAKVMVRLLPIWTMLLMF 310
Query: 300 AVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIIT 359
AVIFQQP TFFTKQGM MKRNIG+ FKIPPATLQSAIT+SIILLMPLYD + IPI Q+IT
Sbjct: 311 AVIFQQPATFFTKQGMTMKRNIGAGFKIPPATLQSAITLSIILLMPLYDKIFIPITQVIT 370
Query: 360 CYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQ-----RS--KQAEAKPITIFWLL 412
+ ++GISVMQRM IGM L+ IAM+IAA VE +RL+ RS Q+E P++IFWLL
Sbjct: 371 --RQERGISVMQRMGIGMVLSIIAMIIAALVEMRRLEIGSQMRSAGSQSETVPLSIFWLL 428
Query: 413 PEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472
P+Y+LLGISDIFTVV MQEFFY EVP MRTMG ALYTSVFGVGSF+SALLI+++E +TS
Sbjct: 429 PQYILLGISDIFTVVGMQEFFYGEVPRHMRTMGIALYTSVFGVGSFVSALLITLVEVYTS 488
Query: 473 SRA 475
S+
Sbjct: 489 SKG 491
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741844|dbj|BAE98864.1| oligopeptide transporter - like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/491 (60%), Positives = 356/491 (72%), Gaps = 24/491 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ER+AFKGVASNLVTYLTDV+KMSNS AA TV++W+G T MLPL AP ADSYWDR
Sbjct: 20 IAGIERYAFKGVASNLVTYLTDVVKMSNSRAATTVNTWSGFTFMLPLFSAPFADSYWDRF 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
TILA S +Y +GL+ LT TAFA + S T S FL+ LSL++LGL NPSLQAFG
Sbjct: 80 FTILASSSLYFVGLVGLTFTAFAGSRSTTKTISLY-FLYTSLSLVALGLGVLNPSLQAFG 138
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+D + D + + +N+ KSN K+ FF+WWYFGVC+GSLLG+T+M+YIQDTFGW
Sbjct: 139 ADQLDYDLDHDNDHEPSSENKEVKSNR-KTQFFQWWYFGVCAGSLLGVTVMAYIQDTFGW 197
Query: 181 VIGFAIPTIAMLTST-AFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239
VIGFAIPT +ML F + D LK KPF I++ IK ++ I
Sbjct: 198 VIGFAIPTASMLLLIFLFLCGCGVYVYADPD---LKAKPFQRILEIIK---ERVCGRNKI 251
Query: 240 SPIDKSD--AMELELQE-KPLC------CNDQNKELDDELENPKNVKHAVQNVKILLRLL 290
+ ++ D AMELELQ+ KPLC N K L D+ ++ K ++ VK+LLRLL
Sbjct: 252 TLVNDHDLNAMELELQDQKPLCNCSNTEANTTTKSLPDDHKSCKTGFSGLETVKLLLRLL 311
Query: 291 PIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTV 350
PIWTMLLMFAVIFQQP TFFTKQGM MKRNIG FKIPPATLQS IT+SIILLMP YD +
Sbjct: 312 PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSIILLMPFYDKI 371
Query: 351 LIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA----KPI 406
LIPI + +T + +KGISV +RM IGMFL+ IA+VIAA VE KRL+ SK + P+
Sbjct: 372 LIPIAKKLT--KNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKISKMMKTTPNLDPV 429
Query: 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466
+I WLLP+Y+LLGISDIFTVV MQEFFY+EVPV MRTMGFALYTSVFGVGSF+SA LIS+
Sbjct: 430 SILWLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSFVSAALISI 489
Query: 467 IEFFTSSRARQ 477
IE +TSSR +
Sbjct: 490 IETYTSSRGGK 500
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242171|ref|NP_196998.1| major facilitator protein [Arabidopsis thaliana] gi|75174167|sp|Q9LFR1.1|PTR50_ARATH RecName: Full=Probable peptide/nitrate transporter At5g14940 gi|9755661|emb|CAC01813.1| oligopeptide transporter-like protein [Arabidopsis thaliana] gi|332004711|gb|AED92094.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/489 (60%), Positives = 355/489 (72%), Gaps = 24/489 (4%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
IAG ER+AFKGVASNLVTYLTDV+KMSNS AA TV++W+G T MLPL AP ADSYWDR
Sbjct: 20 IAGIERYAFKGVASNLVTYLTDVVKMSNSRAATTVNTWSGFTFMLPLFSAPFADSYWDRF 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
TILA S +Y +GL+ LT TAFA + S T S FL+ LSL++LGL NPSLQAFG
Sbjct: 80 FTILASSSLYFVGLVGLTFTAFAGSRSTTKTISLY-FLYTSLSLVALGLGVLNPSLQAFG 138
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+D + D + + +N+ KSN K+ FF+WWYFGVC+GSLLG+T+M+YIQDTFGW
Sbjct: 139 ADQLDYDLDHDNDHEPSSENKEVKSNR-KTQFFQWWYFGVCAGSLLGVTVMAYIQDTFGW 197
Query: 181 VIGFAIPTIAMLTST-AFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239
VIGFAIPT +ML F + D LK KPF I++ IK ++ I
Sbjct: 198 VIGFAIPTASMLLLIFLFLCGCGVYVYADPD---LKAKPFQRILEIIK---ERVCGRNKI 251
Query: 240 SPIDKSD--AMELELQE-KPLC------CNDQNKELDDELENPKNVKHAVQNVKILLRLL 290
+ ++ D AMELELQ+ KPLC N K L D+ ++ K ++ VK+LLRLL
Sbjct: 252 TLVNDHDLNAMELELQDQKPLCNCSNTEANTTTKSLPDDHKSCKTGFSGLETVKLLLRLL 311
Query: 291 PIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTV 350
PIWTMLLMFAVIFQQP TFFTKQGM MKRNIG FKIPPATLQS IT+SIILLMP YD +
Sbjct: 312 PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSIILLMPFYDKI 371
Query: 351 LIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA----KPI 406
LIPI + +T + +KGISV +RM IGMFL+ IA+VIAA VE KRL+ SK + P+
Sbjct: 372 LIPIAKKLT--KNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKISKMMKTTPNLDPV 429
Query: 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466
+I WLLP+Y+LLGISDIFTVV MQEFFY+EVPV MRTMGFALYTSVFGVGSF+SA LIS+
Sbjct: 430 SILWLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSFVSAALISI 489
Query: 467 IEFFTSSRA 475
IE +TSSR
Sbjct: 490 IETYTSSRG 498
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| TAIR|locus:2147840 | 552 | AT5G14940 [Arabidopsis thalian | 0.970 | 0.840 | 0.567 | 3.4e-125 | |
| TAIR|locus:2100262 | 563 | AT3G01350 [Arabidopsis thalian | 0.985 | 0.836 | 0.54 | 2.8e-121 | |
| TAIR|locus:2009487 | 557 | AT1G22540 [Arabidopsis thalian | 0.933 | 0.800 | 0.375 | 1.7e-75 | |
| TAIR|locus:2030326 | 557 | AT1G72120 [Arabidopsis thalian | 0.945 | 0.811 | 0.373 | 4.6e-73 | |
| TAIR|locus:4515102750 | 561 | AT1G72125 [Arabidopsis thalian | 0.945 | 0.805 | 0.368 | 6.7e-72 | |
| TAIR|locus:2009472 | 564 | AT1G22550 [Arabidopsis thalian | 0.939 | 0.796 | 0.328 | 4.3e-61 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.391 | 0.343 | 0.395 | 9.7e-61 | |
| TAIR|locus:1006230253 | 555 | AT3G54450 [Arabidopsis thalian | 0.435 | 0.374 | 0.419 | 2.3e-60 | |
| TAIR|locus:2065568 | 575 | AT2G37900 [Arabidopsis thalian | 0.922 | 0.766 | 0.296 | 4.5e-59 | |
| TAIR|locus:2084500 | 602 | AT3G53960 [Arabidopsis thalian | 0.918 | 0.729 | 0.323 | 7.3e-59 |
| TAIR|locus:2147840 AT5G14940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 277/488 (56%), Positives = 332/488 (68%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRH 60
IAG ER+AFKGVASNLVTYLTDV+KMSNS AA TV++W+G T M DSYWDR
Sbjct: 20 IAGIERYAFKGVASNLVTYLTDVVKMSNSRAATTVNTWSGFTFMLPLFSAPFADSYWDRF 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTXXXXXXXXXXXXXXXXXAGYNPSLQAFG 120
TILA S +Y +GL+ LT TAFA + S T NPSLQAFG
Sbjct: 80 FTILASSSLYFVGLVGLTFTAFAGSRSTTKTISLYFLYTSLSLVALGLGV-LNPSLQAFG 138
Query: 121 ADQMDNNND-DEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMSYIQDTFG 179
ADQ+D + D D + P + +N+ WWYFGVC+GSLLG+T+M+YIQDTFG
Sbjct: 139 ADQLDYDLDHDNDHEPSS-ENKEVKSNRKTQFFQ-WWYFGVCAGSLLGVTVMAYIQDTFG 196
Query: 180 WVIGFAIPTIAMLXXXXXXXXXXRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239
WVIGFAIPT +ML +D + LK KPF I++ IK ++ I
Sbjct: 197 WVIGFAIPTASMLLLIFLFLCGCGVYVY-ADPD-LKAKPFQRILEIIK---ERVCGRNKI 251
Query: 240 SPIDKSD--AMELELQE-KPLC-C-----NDQNKELDDELENPKNVKHAVQNVKILLRLL 290
+ ++ D AMELELQ+ KPLC C N K L D+ ++ K ++ VK+LLRLL
Sbjct: 252 TLVNDHDLNAMELELQDQKPLCNCSNTEANTTTKSLPDDHKSCKTGFSGLETVKLLLRLL 311
Query: 291 PIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTV 350
PIWTMLLMFAVIFQQP TFFTKQGM MKRNIG FKIPPATLQS IT+SIILLMP YD +
Sbjct: 312 PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSIILLMPFYDKI 371
Query: 351 LIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKP----I 406
LIPI + +T + +KGISV +RM IGMFL+ IA+VIAA VE KRL+ SK + P +
Sbjct: 372 LIPIAKKLT--KNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKISKMMKTTPNLDPV 429
Query: 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466
+I WLLP+Y+LLGISDIFTVV MQEFFY+EVPV MRTMGFALYTSVFGVGSF+SA LIS+
Sbjct: 430 SILWLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSFVSAALISI 489
Query: 467 IEFFTSSR 474
IE +TSSR
Sbjct: 490 IETYTSSR 497
|
|
| TAIR|locus:2100262 AT3G01350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 270/500 (54%), Positives = 330/500 (66%)
Query: 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRH 60
IAG ER+AFKGVASNLVTYLTDV+KMSNS AAKTV++W G TSM D+YWDR
Sbjct: 20 IAGMERYAFKGVASNLVTYLTDVVKMSNSRAAKTVNTWAGFTSMLPLFSAPLADTYWDRF 79
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTXXXXXXXXXXXXXXXXXAGYNPSLQAFG 120
TILA S +Y +GL+ LT TAFA + S A T NPSLQAFG
Sbjct: 80 FTILASSSVYFVGLVGLTWTAFAGSRS-ATKTISSYFLYSSLCLVSIGLGVLNPSLQAFG 138
Query: 121 ADQMDNNNDDEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ+D++ D L + +Q WYFGVC+GSL+G+T+M+YIQDTFGW
Sbjct: 139 ADQLDHDLDKNFDL--SSGDQKDAKATRKTQFFQLWYFGVCTGSLMGVTVMAYIQDTFGW 196
Query: 181 VIGFAIPTIAMLXXXXXXXXXXRFCKKKSDHEALKNK----PFMSIVQAIKVAASKLKNG 236
V+GFAIP I + + LK K PF I++ IK K ++
Sbjct: 197 VLGFAIPGIVIFLSILVFMSGCGIYVY-APGARLKKKTTTTPFEKILKFIKGRVVKQRSI 255
Query: 237 KAISPIDKSDAMELELQEKPLC-CNDQN--------KELDDELENPKNVKHAVQNVKILL 287
++ DAMELEL+E+PLC C ++ K L+D+ E+ K V + NVK+++
Sbjct: 256 YTLADEKDLDAMELELEERPLCKCETEDIETPSTTSKGLEDD-ESSKTVFSGIDNVKLVI 314
Query: 288 RLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLY 347
RL PIW MLLMFAVIFQ P TFFTKQG+ MKRNIGS FKIPPATLQS IT+SIILLMPLY
Sbjct: 315 RLFPIWMMLLMFAVIFQLPATFFTKQGVTMKRNIGSNFKIPPATLQSTITLSIILLMPLY 374
Query: 348 DTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRL---QRSK----- 399
D +LIPI + I + GISVM+RM +GMFL+ IA+VIAA VE KRL Q+ K
Sbjct: 375 DKILIPITKRIK--KNGTGISVMERMGVGMFLSIIAIVIAAIVERKRLAISQKMKTLPDY 432
Query: 400 QAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 459
E P++IFWLLP+Y+LLGISDIFTVV MQEFFY+EVPVRMRTMGFALYTSVFGVGSF+
Sbjct: 433 DPETVPLSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGFALYTSVFGVGSFV 492
Query: 460 SALLISVIEFFTSSRA-RQS 478
SA LIS++E ++SS RQ+
Sbjct: 493 SAALISIVEAYSSSTGDRQN 512
|
|
| TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 186/495 (37%), Positives = 278/495 (56%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRHSTIL 64
ERFA+ G++SNL+TYLT + S ++AA V++W+G S+ DS+ R TIL
Sbjct: 47 ERFAYYGISSNLITYLTGPLGQSTAAAAANVNAWSGTASLLPLLGAFVADSFLGRFRTIL 106
Query: 65 AFSFIYVLGLMALTSTAFAWAE-------SPANTTXXXXXXXXXXXXXXXXXAGYNPSLQ 117
A S +Y++GL LT +A ++ S + G+ P +Q
Sbjct: 107 AASALYIVGLGVLTLSAMIPSDCKVSNLLSSCSPRFQVITFFSALYLVALAQGGHKPCVQ 166
Query: 118 AFGADQMDNNNDDEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMSYIQDT 177
AFGADQ D +E C + WWYFG+C G+L + +++YIQD
Sbjct: 167 AFGADQFDEKEPEE----CKAKSSFFN----------WWYFGMCFGTLTTLWVLNYIQDN 212
Query: 178 FGWVIGFAIPTIAM---LXXXXXXXXXXRFCKKKSDHEALKNKPFMSIVQAIKVAASKLK 234
W +GF IP IAM L RF ++ D PF+ I + VAA +K
Sbjct: 213 LSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQS-----PFVRIGN-VYVAA--VK 264
Query: 235 NGKAISPIDKSDAME-LELQEKPLCCNDQNKELDDELENPKNVKHAV---QNVKILLRLL 290
N ++S +D + A E L L C + Q ++ KN ++ + K +LRL
Sbjct: 265 NW-SVSALDVAAAEERLGLVS---CSSSQQFSFLNKALVAKNGSCSIDELEEAKSVLRLA 320
Query: 291 PIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTV 350
PIW L++AV+F Q TFFTKQG M+R+I +KI PATLQS I++SI++ +P+YD V
Sbjct: 321 PIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIFIPIYDRV 380
Query: 351 LIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ------AEAK 404
LIPI + T GI+++QR+ G+FL+ +AMV+AA VE KRL+ + +A
Sbjct: 381 LIPIARSFT--HKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDSPDAT 438
Query: 405 -PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALL 463
P++++WL+P+YVL GI+D+F +V +QEFFY++VP +R++G ALY S+FG+G+FLS+ +
Sbjct: 439 VPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFLSSFM 498
Query: 464 ISVIEFFTSSRARQS 478
IS+IE TS + S
Sbjct: 499 ISIIEKATSQSGQAS 513
|
|
| TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 183/490 (37%), Positives = 270/490 (55%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRHSTIL 64
ERFA+ G+ SNL++YLT + S + AA V++W+G+ ++ D++ R+ TI+
Sbjct: 46 ERFAYYGIGSNLISYLTGPLGESTAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTII 105
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTXXXXXXXXXXXXXXXXXA----GYNPSLQAFG 120
S IYVLGL LT +AF + T+ A G+ P +QAFG
Sbjct: 106 ISSLIYVLGLAFLTLSAFLIPNTTEVTSSTSSFLNVLFFFSLYLVAIGQSGHKPCVQAFG 165
Query: 121 ADQMDNNNDDEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ D + E+ + N WWY + +G I ++ YIQ+ F W
Sbjct: 166 ADQFDEKDSQEKSDRSSFFN--------------WWYLSLSAGICFAILVVVYIQEEFSW 211
Query: 181 VIGFAIPTIAMLXXXXXXXXXXRFCK-KKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239
GF IP + M+ R + K HE N PF I + VA LKN + +
Sbjct: 212 AFGFGIPCVFMVISLVLFVSGRRIYRYSKRRHEEEIN-PFTRIGRVFFVA---LKNQR-L 266
Query: 240 SPIDKSDAMELELQEKPLCCNDQNKEL---DDELENPKNVKHA-VQNVKILLRLLPIWTM 295
S D +ELE P + NK L +D + K + V++ L+RL+P+W
Sbjct: 267 SSSDLCK-VELEANTSPEKQSFFNKALLVPNDSSQGENASKSSDVEDATALIRLIPVWFT 325
Query: 296 LLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPII 355
L +A+ + Q +TFFTKQG+ M R I KIPPA+LQ I +SI+L +P+YD V +PI
Sbjct: 326 TLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVFIGISIVLFVPIYDRVFVPIA 385
Query: 356 QIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSK------QAEAK-PITI 408
++IT + GI+ ++R+ G+ L++I MVIAA VE KRL+ +K Q EA P++I
Sbjct: 386 RLIT--KEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQPEATLPMSI 443
Query: 409 FWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIE 468
+WL+P+Y+LLG++D++T+V MQEFFY++VP +R++G ALY S GVGS LS+LLIS+I+
Sbjct: 444 WWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSALGVGSLLSSLLISLID 503
Query: 469 FFTSSRARQS 478
T A S
Sbjct: 504 LATGGDAGNS 513
|
|
| TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 182/494 (36%), Positives = 270/494 (54%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRHSTIL 64
ERFA G+ SNL++YLT + S + AA V++W+G++++ D++ R+ TI+
Sbjct: 46 ERFANYGIGSNLISYLTGPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITII 105
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTXXXXXXXXXXXXXXXXXA----GYNPSLQAFG 120
SFIYVLGL LT +AF + T+ A G+ P +QAFG
Sbjct: 106 IASFIYVLGLAFLTLSAFLIPNNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFG 165
Query: 121 ADQMDNNNDDEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMSYIQDTFGW 180
ADQ D N E + N WWY +C+G L I ++ YIQ+ W
Sbjct: 166 ADQFDEKNPQENSDRSSFFN--------------WWYLSMCAGIGLAILVVVYIQENVSW 211
Query: 181 VIGFAIPTIAM---LXXXXXXXXXXRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGK 237
+GF IP + M L RF K + + E PF I + VA KN +
Sbjct: 212 ALGFGIPCVFMVISLVLFVLGRKSYRFSKTRQEEET---NPFTRIGRVFFVA---FKNQR 265
Query: 238 A-ISPIDKSDAMELEL-QEKPLCCNDQNKEL---DDELENPKNVKHA-VQNVKILLRLLP 291
S + K + +E QE P + NK L +D E K V++ L+RL+P
Sbjct: 266 LNSSDLCKVELIEANRSQESPEELSFLNKALLVPNDSDEGEVACKSRDVEDATALVRLIP 325
Query: 292 IWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVL 351
+W L +A+ F Q +TFFTKQG+ M+R I +IPPA+LQ I++SI+L +P+YD VL
Sbjct: 326 VWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVPIYDRVL 385
Query: 352 IPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQA----EAK--- 404
+PI + IT + GI+ ++R+ GM L ++ MV+AA VE+KRL+ +K+ + K
Sbjct: 386 VPIGRSIT--KDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQPKTTL 443
Query: 405 PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLI 464
P++I+WL P+Y+LLG++D+ T+V MQEFFY++VP +R++G A+Y S GVGS LS+LLI
Sbjct: 444 PMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLGLAIYLSAMGVGSLLSSLLI 503
Query: 465 SVIEFFTSSRARQS 478
+I+ T A S
Sbjct: 504 YLIDLATGGDAGNS 517
|
|
| TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 164/499 (32%), Positives = 256/499 (51%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRHSTIL 64
ERFA+ G+ SNL+TYLT + S ++AA V++W+G S+ D+Y R+ TI+
Sbjct: 47 ERFAYFGIGSNLITYLTGPLGQSTATAAVNVNTWSGTASILPVLGAFIADAYLGRYRTIV 106
Query: 65 AFSFIYVLGLMALTSTAF----AWAESPANTTXXXXXXXX--------XXXXXXXXXAGY 112
S IY+LGL LT ++ +E + G+
Sbjct: 107 VASLIYILGLGLLTLSSILILMGLSEQRQHNRNASAKPFFWVNILFFCSLYLVAIGQGGH 166
Query: 113 NPSLQAFGADQMDNNNDDEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMS 172
P +QAFGADQ D + E I + N WW+ + +G L I ++
Sbjct: 167 KPCVQAFGADQFDVGDPKERISRGSFFN--------------WWFLSLSAGITLSIIVVV 212
Query: 173 YIQDTFGWVIGFAIPTIAMLXXXXXXXXXXRFCK-KKSDHEALKNKPFMSIVQAIKVAAS 231
Y+QD W +GF IP + M+ + + + D E KN F I + VA
Sbjct: 213 YVQDNVNWALGFGIPCLFMVMALALFLFGRKTYRYPRGDREG-KNNAFARIGRVFLVA-- 269
Query: 232 KLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDEL-ENPKNVKHA----VQNVKIL 286
KN K + S +E+ +K C Q + L L V+ V++ L
Sbjct: 270 -FKNRKL--KLTHSGQLEVGSYKK---CKGQLEFLAKALLPGEGGVEPCSSRDVEDAMAL 323
Query: 287 LRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPL 346
+RL+PIW ++ + + Q TFFTKQG+ + R I F+IPPA+ Q+ I +SI + +P
Sbjct: 324 VRLIPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGFEIPPASFQALIGLSIFISVPT 383
Query: 347 YDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ------ 400
Y+ V +P+ ++IT + GI+++QR+ GM L+S+ MV+AA VE KRL+ +K+
Sbjct: 384 YERVFLPLARLIT--KKPSGITMLQRIGAGMVLSSLNMVVAALVEMKRLETAKEHGLVDR 441
Query: 401 AEAK-PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 459
+A P++I+W +P+Y+LLG+ D+F++V QEFFY++VP +R++G AL S G+ SFL
Sbjct: 442 PDATIPMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTELRSIGLALSLSAMGLASFL 501
Query: 460 SALLISVIEFFTSSRARQS 478
S LI+VI + T S
Sbjct: 502 SGFLITVINWATGKNGGDS 520
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 9.7e-61, Sum P(2) = 9.7e-61
Identities = 79/200 (39%), Positives = 129/200 (64%)
Query: 280 VQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVS 339
V+ VKILLRL+PIW ++F+V+ Q T F +QG MKR IG F+IPPATL T S
Sbjct: 305 VEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGL-FEIPPATLGMFDTAS 363
Query: 340 IILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSK 399
+++ +P+YD V++P+++ T KG + +QRM IG+F++ +++ AA VET RLQ ++
Sbjct: 364 VLISVPIYDRVIVPLVRRFT--GLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLAR 421
Query: 400 Q------AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTM--GFALYTS 451
+ P+ IFW +P+Y L+G + +F V EFFY + P MR++ +AL T+
Sbjct: 422 DLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTT 481
Query: 452 VFGVGSFLSALLISVIEFFT 471
+G++LS+L+I+++ + +
Sbjct: 482 T--LGNYLSSLIITLVAYLS 499
|
|
| TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 94/224 (41%), Positives = 144/224 (64%)
Query: 268 DELENPKN-------VKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRN 320
DE+++ KN + V+ VK++LRL+PIW L+MF Q TFF KQG M R
Sbjct: 282 DEIDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRT 341
Query: 321 IGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLT 380
IG+ F IPPA QS + V+I++L+PLYD V +P+++ IT + GI+ +QR+ +G+F+
Sbjct: 342 IGNHFTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHH--SGITSLQRIGVGLFVA 399
Query: 381 SIAMVIAAAVETKRLQRSKQ-------AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFF 433
+ MVI VE KRL+ ++ E P++ WLLP+Y+L+GI D+FT+V MQE F
Sbjct: 400 TFNMVICGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELF 459
Query: 434 YNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSRARQ 477
Y+++P MR++G A++ SV GVGSF+S +IS ++ + S +
Sbjct: 460 YDQMPETMRSIGAAIFISVVGVGSFVSTGIISTVQTISKSHGEE 503
|
|
| TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 144/486 (29%), Positives = 250/486 (51%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRHSTIL 64
ER ++ G+A+NLV YLT ++ A + V+ W+G+T++ D+Y R++T+L
Sbjct: 55 ERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLGGFIADAYLGRYATVL 114
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTT-------XXXXXXXXXXXXXXXXXAGYNPSLQ 117
+ IY++GL+ LT + F P + G+ PSL+
Sbjct: 115 VATTIYLMGLVLLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAIYLISIGTGGHKPSLE 174
Query: 118 AFGADQMDNNNDDEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMSYIQDT 177
+FGADQ D+++ +E + + N WW +C+G L +T ++YI+D
Sbjct: 175 SFGADQFDDDHVEERKMKMSFFN--------------WWNVSLCAGILTAVTAVAYIEDR 220
Query: 178 FGWVIGFAIPTIAMLXXXXXXXXXXRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGK 237
GW + I T+ M F + ++ P I+Q A +K
Sbjct: 221 VGWGVAGIILTVVMAISLIIFFIGKPFYRYRTP----SGSPLTPILQVFVAAIAKRNLPY 276
Query: 238 AISPIDKSDAMELELQEKPLCCNDQN-KELDD----ELENPKNVKHA----------VQN 282
P + + E L C+ ++ K LD E +NP ++ V+
Sbjct: 277 PSDPSLLHEVSKTEFTSGRLLCHTEHLKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEE 336
Query: 283 VKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIIL 342
K+++ ++PIW L F + Q TFF KQ + M R+IG F +PPA++ + +++I+
Sbjct: 337 TKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGG-FTVPPASMFTLTALTLII 395
Query: 343 LMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402
+ +Y+ +L+P+++ IT Q +GI+++QR+ GM + I M+IAA VE +RL R+
Sbjct: 396 SLTVYEKLLVPLLRSITRNQ--RGINILQRIGTGMIFSLITMIIAALVEKQRLDRTNNN- 452
Query: 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSAL 462
KP+++ WL P+++++G +D FT+V +QE+FY++VP MR++G A Y SV G SFL+ L
Sbjct: 453 -KPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIGAASFLNNL 511
Query: 463 LISVIE 468
LI+ ++
Sbjct: 512 LITAVD 517
|
|
| TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 159/492 (32%), Positives = 254/492 (51%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMXXXXXXXXXDSYWDRHSTIL 64
ER ++ G+++NLV YLT ++ A K + W+G+T++ D+Y R+ T+L
Sbjct: 54 ERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMPLLGGFVADAYLGRYGTVL 113
Query: 65 AFSFIYVLGLMALTSTAF-----AWAESPA--NTTXXXXXXXXXXXXXXXXXAGYNPSLQ 117
+ IY++GL+ LT + F A E G+ PSL+
Sbjct: 114 LATTIYLMGLILLTLSWFIPGLKACHEDMCVEPRKAHEIAFFIAIYLISIGTGGHKPSLE 173
Query: 118 AFGADQMDNNNDDEEILPCTLDNQXXXXXXXXXXXXXWWYFGVCSGSLLGITLMSYIQDT 177
+FGADQ ++ + +E + + N WW G+C+G L +T++ YI+D
Sbjct: 174 SFGADQFEDGHPEERKMKMSYFN--------------WWNAGLCAGILTAVTVIVYIEDR 219
Query: 178 FGWVIGFAIPTIAMLXXXXXXXXXXRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGK 237
GW + I TI M F + + A P ++Q A +K +N
Sbjct: 220 IGWGVASIILTIVMATSFFIFRIGKPFYR----YRAPSGSPLTPMLQVFVAAIAK-RNLP 274
Query: 238 AISPIDKSDAMELELQEKP---LCCNDQN-KELD------DELENPKNVKHA-------- 279
P D S EL +E L + +N K LD D EN K K +
Sbjct: 275 C--PSDSSLLHELTNEEYTKGRLLSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVT 332
Query: 280 -VQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNI-GSRFKIPPATLQSAIT 337
V+ VK+L+ ++PIW L F V Q T F KQ + M R+I G+ F +PPA+L S I
Sbjct: 333 KVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIA 392
Query: 338 VSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQR 397
+SII+ + +Y+ +L+P+++ T + +GIS++QR+ +GM + AM+IAA +E KRL
Sbjct: 393 LSIIITVTIYEKLLVPLLRRATGNE--RGISILQRIGVGMVFSLFAMIIAALIEKKRLDY 450
Query: 398 SKQAEA-KPITI--FWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFG 454
+K+ K +T+ WL P++++LG++D FT+V +QE+FY++VP MR++G A Y SV G
Sbjct: 451 AKEHHMNKTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLG 510
Query: 455 VGSFLSALLISV 466
SF++ LLI+V
Sbjct: 511 AASFVNNLLITV 522
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFR1 | PTR50_ARATH | No assigned EC number | 0.6053 | 0.9728 | 0.8423 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 478 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-46 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 1e-19 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-17 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 2e-07 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-46
Identities = 113/408 (27%), Positives = 180/408 (44%), Gaps = 54/408 (13%)
Query: 62 TILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGA 121
TIL S IY +G + LT A + SP + ++ L LI+LG G P++ AFGA
Sbjct: 3 TILLGSIIYAIGHVLLTLGAIPPSLSPVQV----ALFYIGLYLIALGTGGIKPNVSAFGA 58
Query: 122 DQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWV 181
DQ D D + FF W+YF + +GSL+ + Y+Q G+
Sbjct: 59 DQFDETQDPR-----------------RDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 182 IGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISP 241
+GF +P + ML + F SR KKK+ PF + I AA KN K P
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKA---PPGGSPFTVCIAFIITAAG--KNRKLQLP 156
Query: 242 IDKSDAME-LELQEKPLCCNDQNKELDDEL---------ENPKNVKHAVQNVKILLRLLP 291
D LE K Q K + + +V ++ +L +LP
Sbjct: 157 KDSHWLYWALEKYNKRS--ISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLP 214
Query: 292 IWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVL 351
IW ++ ++ Q T +Q M R I F+IPPA+ QS +++++L+P+ D ++
Sbjct: 215 IWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLV 274
Query: 352 IPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSK------QAEAKP 405
P++ + K+G+++ QR +GMF+ +A +AA VE KR + + P
Sbjct: 275 YPLL------RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVP 328
Query: 406 ITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVF 453
+ I W LPE + G+ EF + +P M ++ L +
Sbjct: 329 LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 1e-19
Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 59/397 (14%)
Query: 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAF 66
F++ G+ + LV YL + + + +A ++ L + PL+ A +ADS+ + TIL
Sbjct: 1 FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60
Query: 67 SFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDN 126
S +YV+G + A P + + L+LI+LG G P + AFG DQ +
Sbjct: 61 SLVYVVGHALASLGAVPSLGHPLHDALS----LVGLALIALGTGGIKPCVSAFGGDQFEE 116
Query: 127 NNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI---QDTFG---- 179
+ FF ++YF + +GSL + + FG
Sbjct: 117 RQLSL-----------------RFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDC 159
Query: 180 WVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239
+ + F +P I M + FS S+ KKK + +K IV A+K K +
Sbjct: 160 FPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALK------KRFRTR 213
Query: 240 SPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMF 299
S ++ P + LD PK + +++ K LLR+L ++ L MF
Sbjct: 214 S------------EDWP-----RLHWLD--WAAPKYLIRMIRSTKRLLRVLFLFIPLPMF 254
Query: 300 AVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIIT 359
+F Q + +T Q M ++G F I P +Q+ + +++L+P++D V+ P
Sbjct: 255 WALFDQQGSRWTLQATRMDGDVGL-FPIQPDQMQAVNPLLVLILVPIFDYVVYPA----- 308
Query: 360 CYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQ 396
+ + +++M +GM L ++A +AA ++ K
Sbjct: 309 LAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNKINP 345
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-17
Identities = 81/488 (16%), Positives = 169/488 (34%), Gaps = 80/488 (16%)
Query: 5 ERFAFKGVASNLVTYLT----DVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH 60
ERF++ G+ + L+ YL D + + A S++ L + P++ LAD
Sbjct: 33 ERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR 92
Query: 61 STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFG 120
TI+ + + +G + L + + S L++ L+LI +G + P++ +
Sbjct: 93 RTIVLGAILMAIGHLVLAIS----------SVSGPGGLYIGLALIIVGTGLFKPNISSLL 142
Query: 121 ADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180
+ K + + F +Y G+ GSL+ + + +GW
Sbjct: 143 GELYP------------------KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGW 184
Query: 181 VIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFM------------SIVQAIKV 228
+GF + + M+ F ++ P +V +
Sbjct: 185 HVGFGLAAVGMIIGLVIFLL----GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA 240
Query: 229 AASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLR 288
+ L N S + ++ + + ++ ++ DE LL
Sbjct: 241 LLTLLLNQNTFSGVLLVISILIAIIY--FAEAFRSPKVFDERRR-------------LLA 285
Query: 289 LLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYD 348
+P++ ++F +++Q + F++PPA QS IIL P+
Sbjct: 286 AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILA 345
Query: 349 TVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITI 408
+ + + K S + +G+ L + +I S +++
Sbjct: 346 ALWTKLGR------GNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGL-----VSV 394
Query: 409 FWLLPEYVLLGISDIF-TVVAMQEFFYNEVPVRM--RTMGFALYTSVFG--VGSFLSALL 463
+WL+ YVL ++F + V + P + M T G +G ++ L
Sbjct: 395 WWLVLSYVLQSFGELFISPVGL-SMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT 453
Query: 464 ISVIEFFT 471
+T
Sbjct: 454 AVTDPAYT 461
|
Length = 498 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 29/199 (14%)
Query: 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL 64
E F+F G+ + L+ YLT+ +K ++ A + S++ L + P+L LAD ++
Sbjct: 21 EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80
Query: 65 AFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQM 124
+ + +G + L ++ SFL+L L++I G + ++
Sbjct: 81 LGALLMAIGHVVLGASEIH-----------PSFLYLSLAIIVCGYGLFKSNVS------- 122
Query: 125 DNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGF 184
C L + ++ + F Y GS++ Y Q+ + W +GF
Sbjct: 123 -----------CLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF 171
Query: 185 AIPTIAMLTSTAFFSFASR 203
+ + M+ F +R
Sbjct: 172 GLAAVGMIAGLVIFLCGNR 190
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.92 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.9 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.9 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.9 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.9 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.9 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.89 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.89 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.89 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.89 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.89 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.89 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.88 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.88 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.88 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.88 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.88 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.87 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.87 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.87 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.86 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.86 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.86 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.86 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.85 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.85 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.85 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.85 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.85 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.85 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.85 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.85 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.85 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.84 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.84 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.84 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.84 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.84 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.84 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.84 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.84 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.83 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.83 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.83 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.83 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.82 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.82 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.82 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.81 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.81 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.81 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.8 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.78 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.76 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.76 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.74 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.74 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.73 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.73 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.72 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.71 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.7 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.7 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.68 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.67 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.67 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.67 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.65 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.64 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.62 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.59 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.58 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.56 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.54 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.5 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.49 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.48 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.47 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.44 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.42 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.4 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.39 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.39 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.36 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.36 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.35 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.34 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.33 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.32 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.3 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.3 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.29 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.26 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.25 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.25 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.25 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.24 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.23 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.23 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.22 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.22 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.2 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.2 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.19 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.19 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.19 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.18 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.17 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.15 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.15 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.15 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.15 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.15 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.12 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.1 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.1 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.1 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.09 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.05 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.05 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.04 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.04 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.03 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.03 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.02 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.99 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.99 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.99 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.95 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.94 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.93 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.92 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.9 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.88 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.88 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.87 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.86 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.85 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.85 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.84 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.83 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.83 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.82 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.8 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.76 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.76 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.76 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.73 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.73 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.7 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.66 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.65 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.65 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.64 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.62 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.61 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.6 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.56 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.55 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.55 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.53 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.49 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.48 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.46 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.44 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.43 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.42 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.4 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.35 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.34 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.33 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.33 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.29 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.26 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.23 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.17 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.16 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.14 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.13 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.13 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.12 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.12 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.08 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.07 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.02 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.99 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.89 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.89 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.76 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.75 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.75 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.68 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.59 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.56 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.55 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.47 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.38 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.31 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.28 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.22 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.21 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.1 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.09 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.0 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 96.71 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 96.71 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.69 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.33 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.08 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.09 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 95.06 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.71 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 94.66 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.49 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 94.23 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.15 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.4 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 92.44 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 92.25 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 90.73 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 89.98 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 89.69 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 89.22 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 88.84 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 88.05 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 86.39 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 84.78 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 83.49 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 83.2 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 80.71 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=391.27 Aligned_cols=449 Identities=38% Similarity=0.606 Sum_probs=399.7
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcc
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTA 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~ 81 (478)
|.+||+++||+..++..|+++.+|.+...+.-.++.|...+...++++++++|.++||++++.++.+++.+|..++..++
T Consensus 46 e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a 125 (571)
T KOG1237|consen 46 EVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSA 125 (571)
T ss_pred HHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998888876
Q ss_pred cccccC-------------CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCccccccccccccccccc
Q 042477 82 FAWAES-------------PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNN 148 (478)
Q Consensus 82 ~~~~~~-------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (478)
..+... +.+.......++.++-++++|.|+.+|+..++.+||+|+..+. +++.
T Consensus 126 ~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~--------------~~~~ 191 (571)
T KOG1237|consen 126 MIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPV--------------EVKG 191 (571)
T ss_pred HhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcc--------------hhhC
Confidence 655542 2222223468889999999999999999999999999955533 4445
Q ss_pred chhhhhhHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHH
Q 042477 149 KSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKV 228 (478)
Q Consensus 149 r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (478)
+..+|+|+|+..+.|.+++..+..|++++.||.+.|.++.+++.++.++++...+.+++++|.+ +|+..+.+++..
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g----sp~t~i~~Vlva 267 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG----SPKTRIGQVLVA 267 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC----CchhHHHHHHHH
Confidence 7799999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHhcccCCCCC------------CCCCCccccccccccccccCCCCC--cccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 042477 229 AASKLKNGKAIS------------PIDKSDAMELELQEKPLCCNDQNK--ELDDELENPKNVKHAVQNVKILLRLLPIWT 294 (478)
Q Consensus 229 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 294 (478)
+.+++....+.. ..+|. +.++++|++....+.+. +.+...|+.+++++ +||.|.++|++|++.
T Consensus 268 a~~k~~~~~~~~~~~~~~~~~~~~~~~~t--~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~-Vee~K~~lr~~Pi~~ 344 (571)
T KOG1237|consen 268 AAFKRKAVVSLDPEELYYDCTDSVAIEGT--KPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQ-VEEVKAVLRLLPIWL 344 (571)
T ss_pred HHHHHhccCCCcchhccccccccccccCC--cccchhhHhhccCCcccccccccCCccCCCcee-hhhhhhhhhhhHHHH
Confidence 999987644322 11222 46677777665544321 11334699999999 999999999999999
Q ss_pred HHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHH
Q 042477 295 MLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMR 374 (478)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 374 (478)
..+++++.+.|+.+.+..|+..|++++++++++|++.++.+..+.+.+..|+++++..|+.||..+ +++.+++.+|++
T Consensus 345 ~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~--~~~~~t~lqrig 422 (571)
T KOG1237|consen 345 TTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTG--NPFGITPLQRIG 422 (571)
T ss_pred HHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcC--CCCCCChhheee
Confidence 999999999999999999999999999877999999999999999999999999999999999988 667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc--CCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHH
Q 042477 375 IGMFLTSIAMVIAAAVETKRLQRSKQ--AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSV 452 (478)
Q Consensus 375 ~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 452 (478)
+|+++..+++...+..|.+|.+...+ +...+++++|++++|+++|++|++..+...|+.++++|++||+.+++++.+.
T Consensus 423 ~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t 502 (571)
T KOG1237|consen 423 IGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLT 502 (571)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888754 3456899999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhhcccc
Q 042477 453 FGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 453 ~~~g~~lg~~i~~~~~~~~~~ 473 (478)
.++|+.++..++.++.+.++.
T Consensus 503 ~a~G~~lss~Lv~~v~~~t~~ 523 (571)
T KOG1237|consen 503 VAVGNYLSSVLVSLVQFSTGK 523 (571)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999988853
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=363.78 Aligned_cols=412 Identities=17% Similarity=0.279 Sum_probs=330.3
Q ss_pred CchhhhhhhhhhhHHHHHHhhhhcC----CChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHH
Q 042477 1 IAGKERFAFKGVASNLVTYLTDVMK----MSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMA 76 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~yl~~~l~----~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l 76 (478)
+|++|||+|||+...|..|++.+++ +|++++.-+.+.|...+++.+++|||++||++|+||++..|.+++++|+++
T Consensus 29 vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~ 108 (498)
T COG3104 29 VELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLV 108 (498)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhH
Q 042477 77 LTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWW 156 (478)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (478)
++.++. .+...++++.+++++|+|.++||+.++++|++|+++|+ |...++.+
T Consensus 109 L~~~~~----------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr------------------rD~gFt~f 160 (498)
T COG3104 109 LAISSV----------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR------------------RDGGFTLF 160 (498)
T ss_pred Hhcccc----------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc------------------cCCCccEE
Confidence 998831 36788999999999999999999999999999999987 99999999
Q ss_pred HHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCCh----hHHHHHHHHHHHHh
Q 042477 157 YFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKP----FMSIVQAIKVAASK 232 (478)
Q Consensus 157 ~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 232 (478)
|.+.|+|++++|.+.+++.+++||+..|.++++.+.++++.+++++++......+++..... ......+.......
T Consensus 161 Y~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (498)
T COG3104 161 YMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA 240 (498)
T ss_pred EEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765543222111011 11111111111111
Q ss_pred c--ccCCCCCCCCCCccccccccccccccCCCCC-cccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 042477 233 L--KNGKAISPIDKSDAMELELQEKPLCCNDQNK-ELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTF 309 (478)
Q Consensus 233 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (478)
. .... . +............-... ......+++. -+||||++..+++++..+++|+.+.|..+.
T Consensus 241 ~~~~~l~------~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ss 306 (498)
T COG3104 241 LLTLLLN------Q---NTFSGVLLVISILIAIIYFAEAFRSPKV-----FDERRRLLAAIPLFLFAVIFWALYEQMGSS 306 (498)
T ss_pred HHHHHHH------H---HHHHHHHHHHHHHHHHHHHHHHhccCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 0 0000 0 00000000000000000 0000112221 278899999999999999999999999999
Q ss_pred hhhhhccc-cccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHH
Q 042477 310 FTKQGMAM-KRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAA 388 (478)
Q Consensus 310 ~~~~~~~~-~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 388 (478)
+..|..++ +++..+ ++++++++|++|++.++++.|+.+.++.|+.++. +.++++.|++.|+++++.+++...
T Consensus 307 l~~~a~~~v~~~~~g-~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~------~~ps~~~KFalGl~l~g~~fl~l~ 379 (498)
T COG3104 307 LNLYADRNVNRQIFG-FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN------KQPSTPIKFALGLILAGLGFLILL 379 (498)
T ss_pred HHHHHHHhhcccccc-eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC------CCCCcchHHHHHHHHHHHHHHHHH
Confidence 98887654 555344 8999999999999999999999999999877753 479999999999999999998887
Q ss_pred HHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042477 389 AVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466 (478)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~ 466 (478)
........ +....+++|+++.|+++++||.+.+|...+++++.+|+++++..|+.|.+....|+.++..+.+.
T Consensus 380 ~~~~~~~~-----~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 380 LAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHhhcC-----CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 66432221 12457999999999999999999999999999999999999999999999999999999888773
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=328.06 Aligned_cols=409 Identities=14% Similarity=0.227 Sum_probs=303.6
Q ss_pred CchhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhc
Q 042477 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTST 80 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~ 80 (478)
.|++||++||++..+++.|+++++|++.++++++.+.+....++.++++|+++||++||||++..+.+++.+|++++.++
T Consensus 22 ~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~ 101 (489)
T PRK10207 22 VELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS 101 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999994599999999999999999999887
Q ss_pred ccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 81 AFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
. .....++++|+++++|.|..+|+..++++|++|+++++ |++.++++|+..
T Consensus 102 ~-----------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~------------------~~~~~~~~~~~~ 152 (489)
T PRK10207 102 L-----------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR------------------LDGAFTLFYMSI 152 (489)
T ss_pred c-----------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh------------------hhcchhHHHHHH
Confidence 2 22344668999999999999999999999999987633 788999999999
Q ss_pred hhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHH--------HHHHHh
Q 042477 161 CSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAI--------KVAASK 232 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 232 (478)
|+|+++||.+++++.++.|||+.|+++.+.++++++.+...++.+++.+++.++ ++.+.....+ ......
T Consensus 153 nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~l~~~~~~~~~~~~~~ 230 (489)
T PRK10207 153 NIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDH--KPMSFSKLLLVLLGSVVMIFVCAW 230 (489)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCc--cchhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998777776666666665554433211100 2221111100 000000
Q ss_pred cccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhh
Q 042477 233 LKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTK 312 (478)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (478)
... .. . . ............ . ....+.....++ .++++.+..+.++...+++|..+.|..+.+..
T Consensus 231 ~~~-~~-~---~---~~~~~~~~~~i~---~---~~f~~~~~~~~~--~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l 294 (489)
T PRK10207 231 LMH-NV-E---V---ANLVLIVLSIVV---T---IIFFREAFKLDK--TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNF 294 (489)
T ss_pred HHh-hh-h---H---HHHHHHHHHHHH---H---HHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 000 00 0 0 000000000000 0 000000011112 34556666677777889999999999887776
Q ss_pred hhc-cccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 042477 313 QGM-AMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVE 391 (478)
Q Consensus 313 ~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 391 (478)
+.. .+++...+ +.++++.++++|++.++++.|+.++++. |+.. |++.+++..|+.+|+++++++++.++..+
T Consensus 295 ~~~~~~~~~~~G-~~i~~~~~~~~n~~~iii~~pl~~~l~~----rl~~--r~~~~~~~~k~~~G~~l~~~~~~~~~~~~ 367 (489)
T PRK10207 295 FAINNVHHEILG-FSINPVSFQALNPFWVVVASPILAGIYT----HLGS--KGKDLSMPMKFTLGMFLCSLGFLTAAAAG 367 (489)
T ss_pred HHHHhccccccc-eEECHHHHHhHhHHHHHHHHHHHHHHHH----HHhh--CCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 45555444 7889999999999999999999887644 4433 44478999999999999999987665433
Q ss_pred HHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 042477 392 TKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIE 468 (478)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~ 468 (478)
... .+. ....++||+++.+++.++||.+..|+.++++++.+|++++|.++|++++.+++|+.+|..+.....
T Consensus 368 ~~~---~~~--~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 368 MWF---ADA--QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred Hhh---cCC--CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 111 124578999999999999999999999999999999999999999999999999999998887653
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=322.74 Aligned_cols=409 Identities=15% Similarity=0.218 Sum_probs=307.0
Q ss_pred CchhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhc
Q 042477 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTST 80 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~ 80 (478)
+|++||++||++...++.|+++++|+++.+++.+.+.+.....++++++|+++||++||||++.++.++.++|++++...
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999996699999999999999998877643
Q ss_pred ccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 81 AFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
. .+...++++..+..+|.|..+|+..++++|++|+++++ |.++++++|...
T Consensus 97 ~-----------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~------------------R~sgf~i~Y~~~ 147 (493)
T PRK15462 97 E-----------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR------------------RDGGFSLMYAAG 147 (493)
T ss_pred h-----------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc------------------ccceehHHHHHH
Confidence 1 22344556666777899999999999999999987655 899999999999
Q ss_pred hhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccC---CCccccCChhHH-HHH-HHHHH-----H
Q 042477 161 CSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKS---DHEALKNKPFMS-IVQ-AIKVA-----A 230 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~-----~ 230 (478)
|+|+.++|.+++++.+++||++.|.++++.++++.+.++..++.+.+.. |++. +++.... ... +.... .
T Consensus 148 nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 226 (493)
T PRK15462 148 NVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVL-RATNFLLPNWGWLLVLLVATPAL 226 (493)
T ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877777777666665543321 1110 0000000 000 00000 0
Q ss_pred HhcccCCCCCCCCCCccccccccccccccCC--CCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 042477 231 SKLKNGKAISPIDKSDAMELELQEKPLCCND--QNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVT 308 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (478)
...... ++ +.+....... .... ...... ...+ -+||+|+...+++++..+++|+.|+|.++
T Consensus 227 ~~~~~~-----------~~--~~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~ 289 (493)
T PRK15462 227 ITVLFW-----------KE--WSVYALIVATIIGLGV-LAKIYR-KAEN--QKQRKELGLIVTLTFFSMLFWAFAQQGGS 289 (493)
T ss_pred HHHHHH-----------HH--HHHHHHHHHHHHHHHH-HHHHHH-hcCC--HHHHhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 000000 00 0000000000 0000 000000 0111 36788888888999999999999999999
Q ss_pred hhhhhhc-cccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 042477 309 FFTKQGM-AMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIA 387 (478)
Q Consensus 309 ~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 387 (478)
.+..+.. +.|+++++ +++|+.+++++|++.++++.|+...++.++.+ +++.++.+.|+.+|+++++++++.+
T Consensus 290 sl~lfa~~~vd~~~~g-~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~------~~~~~s~~~Kfa~g~~~~g~~f~~l 362 (493)
T PRK15462 290 SISLYIDRFVNRDMFG-YTVPTAMFQSINAFAVMLCGVFLAWVVKESVA------GNRTVRIWGKFALGLGLMSAGFCIL 362 (493)
T ss_pred HHHHHHHHhccchhcc-eeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhc------CCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 8877764 57888776 99999999999999999999999988654432 2336899999999999999999887
Q ss_pred HHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHH-hHHHHHHHHHHHH
Q 042477 388 AAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVF-GVGSFLSALLISV 466 (478)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~~g~~lg~~i~~~ 466 (478)
.+.... .+.+ ...+++|++..|+++++||.+.+|...+++.+.+|++.||+.||+|.+.. .+|+.++..+.+.
T Consensus 363 ~~~~~~----~~~~--~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 363 TLSARW----SAMY--GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred HHHHhh----cCCC--CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765321 1111 24788999999999999999999999999999999999999999998854 7898888888776
Q ss_pred hhh
Q 042477 467 IEF 469 (478)
Q Consensus 467 ~~~ 469 (478)
...
T Consensus 437 ~~~ 439 (493)
T PRK15462 437 TSQ 439 (493)
T ss_pred hcc
Confidence 643
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=321.57 Aligned_cols=409 Identities=13% Similarity=0.186 Sum_probs=307.1
Q ss_pred chhhhhhhhhhhHHHHHHhhhh--cCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhh
Q 042477 2 AGKERFAFKGVASNLVTYLTDV--MKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTS 79 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~--l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~ 79 (478)
|++||++||++.++++.|++++ +|+++.+++++.+.+.+...++++++|+++||++|||+++..+.++.+++.+++++
T Consensus 19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999987 99999999999999999999999999999999449999999999999999999888
Q ss_pred cccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCC-CCCcccccccccccccccccchhhhhhHHH
Q 042477 80 TAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNN-DDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
+ .+...++++|++.|+|.|...|+..++++|++|+++ ++ |+++++++|+
T Consensus 99 ~------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~------------------r~~~~~~~~~ 148 (475)
T TIGR00924 99 S------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR------------------RDGGFTLFYM 148 (475)
T ss_pred c------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc------------------ccceehhHHH
Confidence 7 567778889999999999999999999999998765 23 8899999999
Q ss_pred HHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccC----ChhHHHH---HHHHHHHH
Q 042477 159 GVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKN----KPFMSIV---QAIKVAAS 231 (478)
Q Consensus 159 ~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~ 231 (478)
..|+|.++||.+++++.+++||++.|.++++.++++.+.+.+.++.+++.++++++.+ +...... ..+.....
T Consensus 149 ~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (475)
T TIGR00924 149 SINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFF 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998999999999887777776666665655543332221000 0000000 00000000
Q ss_pred hcccCCCCCCCCCCccccccccc----cccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 042477 232 KLKNGKAISPIDKSDAMELELQE----KPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPV 307 (478)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (478)
...... +. ...+... ...... . ... ..+...+ ..++++..+.+++++...++|+.|.|..
T Consensus 229 ~~~~~~-----~~---~~~~~~~~~~~~~~~~~-~----~~~-~~~~~~~--~~~~~~~~~~l~l~~~~~~~~~~~~Q~~ 292 (475)
T TIGR00924 229 CAWLMH-----HV---VIANILLMTVTLAVIIF-F----FRL-AFKPRLD--AVARNKMYAYIVLFLEAVVFWVLYAQMP 292 (475)
T ss_pred HHHHHh-----cc---HHHHHHHHHHHHHHHHH-H----HHH-HHhccCC--HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000 00 0000000 000000 0 000 0000111 2334445567788889999999999999
Q ss_pred chhhhhh-ccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHH
Q 042477 308 TFFTKQG-MAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVI 386 (478)
Q Consensus 308 ~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 386 (478)
+.+..+. ..++...++ +++++++++++|++.+++++|+.+.++.++.| |++.++...|+.+|+++.++++..
T Consensus 293 s~l~l~~~~~~~~~~~~-~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~------~~~~~~~~~k~~~G~~l~~~~~~~ 365 (475)
T TIGR00924 293 TSLNFFADNNMHHEMLG-MSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGR------KGKDPTTPLKFTLGMLFCGASFLT 365 (475)
T ss_pred hHHHHHHHHhccccccc-eEECHHHHHhhhHHHHHHHHHHHHHHHHHHHh------CCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9876544 456776665 89999999999999999999998876544333 333577888999999999999988
Q ss_pred HHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042477 387 AAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466 (478)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~ 466 (478)
.++.... .+ ++.+.++||+++++++.++||.+..|..++++++.+|+++||+++|++.+...+|+.+++.+...
T Consensus 366 ~~~~~~~----~~--~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~ 439 (475)
T TIGR00924 366 FAASIWF----AD--AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF 439 (475)
T ss_pred HHHHHhh----cC--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765221 11 12357999999999999999999999999999999999999999999999999999999988876
Q ss_pred hhh
Q 042477 467 IEF 469 (478)
Q Consensus 467 ~~~ 469 (478)
...
T Consensus 440 ~~~ 442 (475)
T TIGR00924 440 GAV 442 (475)
T ss_pred Hhc
Confidence 644
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=309.72 Aligned_cols=402 Identities=15% Similarity=0.241 Sum_probs=299.9
Q ss_pred CchhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhc
Q 042477 1 IAGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTST 80 (478)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~ 80 (478)
.|++||++||++..+++.|+++++|+++.+++++.+.+.......++++|+++||++|||+++..+.++.++++.++.++
T Consensus 29 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~ 108 (500)
T PRK09584 29 IELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999888878888888999999994499999999999999999888876
Q ss_pred ccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 81 AFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
. .....++++|+++|+|.|...|+..++++|++|+++++ |+++++++|+..
T Consensus 109 ~-----------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~------------------~~~~~~~~~~~~ 159 (500)
T PRK09584 109 G-----------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR------------------LDGAFTMYYMSI 159 (500)
T ss_pred c-----------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh------------------hhhcchHHHHHH
Confidence 2 34566778999999999999999999999999876533 667899999999
Q ss_pred hhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccccc--CCCccccCChhHHHH------HHHHH-HHH
Q 042477 161 CSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKK--SDHEALKNKPFMSIV------QAIKV-AAS 231 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~-~~~ 231 (478)
|+|+++||.+++++.+++||++.|.++++..+++.+.+.+.++.+++. +|++ +|.+... ..... ...
T Consensus 160 ~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 235 (500)
T PRK09584 160 NIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDF----EPINYRKLLLTIVGVVALIAIA 235 (500)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCc----cccchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877777666555555444332 1221 1221111 11001 011
Q ss_pred hcccCCCCCCCCCCccccccccccccccCCCCCcccccCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Q 042477 232 KLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELEN-PKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFF 310 (478)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (478)
....+.+ +.. ...-....... ....+. .+..+ ..++++.+..+++++..+++|+.+.|.++.+
T Consensus 236 ~~~~~~~----~~~--~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l 299 (500)
T PRK09584 236 TWLLHNQ----EIA--RMALGVVALGI--------VVIFGKEAFAMK--GAARRKMIVAFILMLEAIIFFVLYSQMPTSL 299 (500)
T ss_pred HHHHhcc----hHH--HHHHHHHHHHH--------HHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 0000000 000 00000000000 000000 01111 2455666666777788899999999999998
Q ss_pred hhhhcc-ccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 042477 311 TKQGMA-MKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAA 389 (478)
Q Consensus 311 ~~~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 389 (478)
..+..+ .+++..+ +.+++++++++|++.++++.|+.+.+ ++|+.+ +.++.+++.+|+++++++++....
T Consensus 300 ~~~~~~~~~~~~~g-~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~-----r~~~~~~~~~G~~l~~l~f~~l~~ 369 (500)
T PRK09584 300 NFFAIRNVEHSILG-IAVEPEQYQALNPFWIMIGSPILAAI----YNKMGD-----RLPMPHKFAIGMVLCSGAFLVLPL 369 (500)
T ss_pred HHHHHHhccccccc-eEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCc-----CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 877654 4555554 78999999999999999999999775 344433 567889999999999999988776
Q ss_pred HHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 042477 390 VETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVI 467 (478)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~ 467 (478)
.... .+ +....+.+|+++.+++.++||.+..|...+++.+.+|+++||+++|+|.+...+|+.++..+.+.+
T Consensus 370 ~~~~----~~--~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 370 GAKF----AN--DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred HHHh----cC--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5321 11 123567889999999999999999999999999999999999999999999999999998887644
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=281.77 Aligned_cols=335 Identities=26% Similarity=0.463 Sum_probs=277.9
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
|+|||+...+.+|+++.+|++++++..+.+.+....++.++++|+++|+++||++++.++.+++.+|+.++++++.++..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887543221
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
. +......++++.+.++|.|+++||..++.+|+++++++ +.|.++|+|+|+++|+|+++
T Consensus 81 ~----~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~-----------------~~~~s~F~~fY~~iNiGSli 139 (654)
T TIGR00926 81 H----PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL-----------------SLRSRFFSFFYFAINAGSLI 139 (654)
T ss_pred c----chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch-----------------hHHHHHHHHHHHHHHHHHHH
Confidence 0 12245577899999999999999999999999986442 12889999999999999999
Q ss_pred Hhhhhhhhccc-------cchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCC
Q 042477 167 GITLMSYIQDT-------FGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI 239 (478)
Q Consensus 167 g~~~~~~i~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (478)
++.+.+++.+. .+|+.+|.+++++++++.+++....+++++++|.+ ++..++.+++..+.+++.....
T Consensus 140 s~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g----s~l~~v~~vi~~a~~~~~~~~~- 214 (654)
T TIGR00926 140 STIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKG----NIVSKVIKCIVTALRKRFSTRS- 214 (654)
T ss_pred HHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc----cHHHHHHHHHHHHHHHhhccCC-
Confidence 99999999744 36999999999999999998888888887777766 7777777777776665432111
Q ss_pred CCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccc
Q 042477 240 SPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKR 319 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (478)
++ ....+.+.+.. ....++ ++++|++++++++++...++|..+.|..+.+..|...++.
T Consensus 215 ---~~---~~~~~ld~a~~--------------~~~~~~-V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~ 273 (654)
T TIGR00926 215 ---EH---WPLHWLDYAKD--------------KHDIRM-IRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG 273 (654)
T ss_pred ---cc---cchhHHHHhcc--------------ccccch-HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC
Confidence 00 11122221110 111233 7889999999999999999999999999999999998888
Q ss_pred cCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 042477 320 NIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKR 394 (478)
Q Consensus 320 ~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 394 (478)
++++ +.+++.+++.+|++.++++.|+++..+.|..+|+.. ..++.+|+++|+++++++++++...|..+
T Consensus 274 ~l~g-~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~-----~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 274 DVGG-FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT-----RFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred ccCC-EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 889999999999999999999999888887776533 68899999999999999999999888775
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=243.70 Aligned_cols=357 Identities=29% Similarity=0.461 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCC-CCCccccccc
Q 042477 60 HSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNN-DDEEILPCTL 138 (478)
Q Consensus 60 ~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (478)
+|++++|.+++.+|++++.+++.++... .+.+...+++++.++++|+|+.+||+.++++||+++++ ++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~---~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~-------- 69 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP---SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR-------- 69 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH--------
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh---hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh--------
Confidence 5899999999999999999887765431 12456899999999999999999999999999999773 33
Q ss_pred ccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccccc-CCCccccCC
Q 042477 139 DNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKK-SDHEALKNK 217 (478)
Q Consensus 139 ~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 217 (478)
|.++|+|+|++.|+|++++..+.+++++++||.+.|.++++.++++.+.++..++++++. +|.+ +
T Consensus 70 ----------~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~----~ 135 (372)
T PF00854_consen 70 ----------RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGG----S 135 (372)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S---------S
T ss_pred ----------hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCC----c
Confidence 999999999999999999999999999999999999999999999999999999988877 5555 5
Q ss_pred hhHHHHH-HHHHHHHhcccCCCCCCCCCCccccc-cccccccccCCCCC--------cccccCCCC-CCchhhHHHHHHH
Q 042477 218 PFMSIVQ-AIKVAASKLKNGKAISPIDKSDAMEL-ELQEKPLCCNDQNK--------ELDDELENP-KNVKHAVQNVKIL 286 (478)
Q Consensus 218 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~v~~~~~~ 286 (478)
+..+..+ +.....+++....+.. ++. ..+. ...++... ..... ......|.. ++.++ +++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~ 210 (372)
T PF00854_consen 136 PLTNFIKLVLVAAFKKRKLAVPKG--SSW-LDWALFQYSERSI-FGIIVFIRAAVIFFPEIFFWALFCQVQR-VEELKAL 210 (372)
T ss_dssp --S--SHHHHHHHHHHHCCCH-HH--HHH-HHHHHHHHCCCCC-CCCCCHHHHHHHHCCCHHHHTTTSSTTT-HHHCCHH
T ss_pred ccchhHHHHHHHHHHHhhcccccc--hHH-HHHhhhhhhhhhh-hhhhhhccchhhhhhhhhhcccCCccce-eeeeeee
Confidence 5555333 3333333333322100 000 0000 00000000 00000 000111222 22333 5667777
Q ss_pred HHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q 042477 287 LRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKG 366 (478)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~ 366 (478)
.+.++.+.+.+.+...+.+...+...+...++...++.+++|+++++++|++.++++.|+++++++|+.| . ++.
T Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~-----~~~ 284 (372)
T PF00854_consen 211 IRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-R-----GIQ 284 (372)
T ss_dssp HCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T--------
T ss_pred eeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-h-----ccc
Confidence 8888888888888888888888888888888776665589999999999999999999999999999887 2 236
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHH
Q 042477 367 ISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGF 446 (478)
Q Consensus 367 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 446 (478)
+++..|+.+|++++.++++..+..|..+....+.+ ...+.+|+++.+++..++|.+..+...+..+|.+|++..+..+
T Consensus 285 ~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~ 362 (372)
T PF00854_consen 285 PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC--GKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMM 362 (372)
T ss_dssp ---HHHHHHH-HHHHHHHHTTTHHHH---HH------TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSST
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc--CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHH
Confidence 88999999999999999999998887655444332 2334478889999999999999999999888888888777777
Q ss_pred HHHHHHHh
Q 042477 447 ALYTSVFG 454 (478)
Q Consensus 447 g~~~~~~~ 454 (478)
|++.....
T Consensus 363 ~~~~~~~~ 370 (372)
T PF00854_consen 363 GIWFALSA 370 (372)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHhc
Confidence 77776543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=210.67 Aligned_cols=354 Identities=14% Similarity=0.082 Sum_probs=231.6
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..++.......++.|.. +++.++.+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..++.++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777888775 6899999999999999999999999999999996 9999999999998888888777621
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.. ..+.+.++++|+++|++.+...|...+++.|++|+++ |++.+++.+...++
T Consensus 87 ~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 139 (365)
T TIGR00900 87 LG-------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ--------------------LTQANSLSQAVRSL 139 (365)
T ss_pred cC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--------------------HHHHHhHHHHHHHH
Confidence 10 0278899999999999999999999999999999877 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhH-HHHHHHHHHHHhcccCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFM-SIVQAIKVAASKLKNGKAISP 241 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (478)
|..+||.+++++.+..||++.|.+.++..+++.++.+..+.+ ++ ++.++ ++.. +..+-
T Consensus 140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~---------------- 198 (365)
T TIGR00900 140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIP--EL-AASEI--QALSNAVLRD---------------- 198 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc--cC-CCccc--cccchhHHHH----------------
Confidence 999999999999888999999988877666555444433221 11 11000 0000 00000
Q ss_pred CCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhccCcchhhhhhcccccc
Q 042477 242 IDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIW-TMLLMFAVIFQQPVTFFTKQGMAMKRN 320 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (478)
.. +.+ +. ..+.+.+....... ................+..+..+.+
T Consensus 199 ----------~~---------------~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (365)
T TIGR00900 199 ----------TR---------------EGI-----KF-VLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRG-- 245 (365)
T ss_pred ----------HH---------------hHH-----HH-HHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc--
Confidence 00 000 00 11111121111111 1111111111011111111100111
Q ss_pred CCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 042477 321 IGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ 400 (478)
Q Consensus 321 lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 400 (478)
....+.+.....+..++..++..++ .+ +.++++.+..+.++.++++.......
T Consensus 246 -----~~~~~~~~~~~~~~~~~~~~~~~~l----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 298 (365)
T TIGR00900 246 -----STHYGWVLAAFGLGALLGALLLGLL----GR---------YFKRMALMTGAIFVIGLAILVVGLTP--------- 298 (365)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHH----HH---------HhchhHHHHHHHHHHHHHHHHHHhhc---------
Confidence 1112233333333333433333322 22 22333445556666666655544331
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Q 042477 401 AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFT 471 (478)
Q Consensus 401 ~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~ 471 (478)
+ +.+...+..++.+++.....+...++..+.+|++.||+++|+.+....++..+++.+.+.+.+..
T Consensus 299 ----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 299 ----P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred ----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 35666777888999999999999999999999999999999999999999999999999887643
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-24 Score=218.02 Aligned_cols=344 Identities=12% Similarity=0.110 Sum_probs=234.3
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcc
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTA 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~ 81 (478)
+++..++++.+.+.++.|+++++|+++.+.|.+.+...+...+..+++|+++||+ |||+++..+.++..++.+++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~- 96 (400)
T PRK11646 19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFATMAIA- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHHHHHHh-
Confidence 3567788999999999999999999999999999999999999999999999996 99999999999999999988877
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
++.+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.+...+
T Consensus 97 -----------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~a~~~~~~~~~ 145 (400)
T PRK11646 97 -----------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ--------------------RGRFFSLLMMQDS 145 (400)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--------------------HHHHHHHHHHHHH
Confidence 678889999999999999889999999999999877 9999999999999
Q ss_pred hhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCC
Q 042477 162 SGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISP 241 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (478)
+|..+||.+++++. .+||++.|++.++..+++.++..+..++.+ ++. .+++..+
T Consensus 146 ~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~---~~~--~~~~~~~-------------------- 199 (400)
T PRK11646 146 AGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK---LST--VRTPVRE-------------------- 199 (400)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc---ccc--cchhhHH--------------------
Confidence 99999999999998 689999999887766555444333322110 000 0000000
Q ss_pred CCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccC
Q 042477 242 IDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNI 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (478)
.++ +..+++ +++...... ..++..+.+.....+. .+.+.
T Consensus 200 ----------------------------~~~-----~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~p~---~~~~~- 238 (400)
T PRK11646 200 ----------------------------GMT-----RVLRDK-RFVTYVLTL---TGYYMLAVQVMLMLPI---MVNDI- 238 (400)
T ss_pred ----------------------------HHH-----HHHcCc-hHHHHHHHH---HHHHHHHHHHHHhhhh---hHHhh-
Confidence 000 001111 111111111 1111111111111111 11111
Q ss_pred CCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 042477 322 GSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQA 401 (478)
Q Consensus 322 g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (478)
+. .....+.+............... .++.+| +.+..+++..+..+.++++......
T Consensus 239 ~~-~~~~~g~l~~~~~~~~~~~~~~~----~~~~~~--------r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 239 AG-SPSAVKWMYAIEACLSLTLLYPI----ARWSEK--------RFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred cC-CchHHHHHHHHHHHHHHHHHHHH----HHHHHH--------hcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 10 11112222222222222222111 111211 2333455677777777776555433
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 402 EAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 402 ~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
.+.++++...++.+++.....|...+++.+.+|++.||+++|+.++...+|+.+|+.+.+.+.+.+++
T Consensus 295 ----~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~ 362 (400)
T PRK11646 295 ----SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA 362 (400)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh
Confidence 13344555566788888889899999999999999999999999999999999999999999887654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=217.44 Aligned_cols=368 Identities=13% Similarity=0.098 Sum_probs=226.7
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
..+.+.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||+++..+.+++.++.++++.+ ++.
T Consensus 28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~a------------~~~ 94 (495)
T PRK14995 28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAFS------------PTA 94 (495)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHc------------CCH
Confidence 34455678999999999999999999999999999999996 99999999999999999999988 789
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCC-CCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 96 SFLFLPLSLISLGLAGYNPSLQAFGADQMD-NNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
+.++++|+++|+|.+...|.....+.+.++ +++ |+++++++....++|..+||.+++++
T Consensus 95 ~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~--------------------r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 95 SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ--------------------RNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888888877764 444 99999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHH---HH--HHHHHHhcccCCCCCCCCCCcc--
Q 042477 175 QDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIV---QA--IKVAASKLKNGKAISPIDKSDA-- 247 (478)
Q Consensus 175 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~-- 247 (478)
.+++|||+.|++..++.+++.++..+..|+.+++++++ .+...... .. +......... . ..+...+
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~---~d~~g~~~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~ 227 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQP---LNLGHALMLIVAILLLVYSAKTALK---G-FLSLWVTSL 227 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC---CChHhHHHHHHHHHHHHHHHHhccc---c-CCchHHHHH
Confidence 99999999999988776666655555444321111111 01111100 00 0011110000 0 0000000
Q ss_pred ---------ccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhcccc
Q 042477 248 ---------MELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMK 318 (478)
Q Consensus 248 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (478)
..+-+.|. . ...+....+ +-..+..................+. ..+.. .+.
T Consensus 228 ~~~~~~~~l~~f~~~e~-------~------~~~p~~~~~-lf~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~lq 287 (495)
T PRK14995 228 TLLTGALLLGLFIRTQL-------A------ASRPMIDMR-LFTHRIILSGVVMAMTAMITLVGFE---LLMAQ---ELQ 287 (495)
T ss_pred HHHHHHHHHHHHHHHHh-------c------CCCCCcCHH-HhCCcccHHHHHHHHHHHHHHHHHH---HHHHH---HHH
Confidence 00000000 0 000000000 1111111111111111111011110 01111 111
Q ss_pred ccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042477 319 RNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRS 398 (478)
Q Consensus 319 ~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 398 (478)
...|. -....+.......+...+..++.+++ .+ +.++++.+..|+++.+++........
T Consensus 288 ~v~g~-s~~~ag~~~~~~~~~~~~~~~~~g~l----~~---------r~g~~~~~~~g~~~~~~~~~~l~~~~------- 346 (495)
T PRK14995 288 FVHGL-SPLEAGMFMLPVMVASGFSGPIAGIL----VS---------RLGLRLVATGGMALSALSFYGLAMTD------- 346 (495)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHH----HH---------HcCchHHHHHHHHHHHHHHHHHHHhc-------
Confidence 11110 01122222223333333444444332 22 23344556777777777766554331
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 399 KQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 399 ~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
...+.+...+..++.|+|.+...+.....+.+.+|++.+|.+++++++.+++|+.+|+.+.+.+.+
T Consensus 347 -----~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 347 -----FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -----CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122444556678889999999999999999999999999999999999999999999999888754
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=207.14 Aligned_cols=345 Identities=20% Similarity=0.285 Sum_probs=221.5
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..++.......++.++.+++|.++.+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..++.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-- 82 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAFA-- 82 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhhh--
Confidence 445566666666777688899999999999999999999999999999999996 99999999999999996666665
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++
T Consensus 83 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~ 132 (352)
T PF07690_consen 83 ----------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE--------------------RGRAFGILSAGFSL 132 (352)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC--------------------HHHHHHHHHHHHHH
T ss_pred ----------hhHHHHhhhccccccccccccccccccccccchhhh--------------------hhhccccccchhhh
Confidence 345589999999999999999999999999999877 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
|..+||.+++++.+.++|++.|++.+++.++..++.....+..++++++.++ .+
T Consensus 133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~--~~------------------------ 186 (352)
T PF07690_consen 133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP--KE------------------------ 186 (352)
T ss_dssp HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS--TT------------------------
T ss_pred hhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccc--cc------------------------
Confidence 9999999999999889999999999988777766433333221111111000 00
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
++ ++ ....+.+ ..+. +.+.+.++..+ .........+.........+ +.+..+
T Consensus 187 -----~~----~~-----------~~~~~~~-~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---l~~~~~ 238 (352)
T PF07690_consen 187 -----SE----SK-----------KPKPLKP-GFKS-LFKNPVLWILL---IAFFLFFFVFSGFSFFLPLY---LQEVLG 238 (352)
T ss_dssp -----TT-----------------HHHCCCH--CTH-HHHHHCCHHHH---HHHHHHHHHHHHHHHHHHHH---CCHHHH
T ss_pred -----cc----cc-----------ccccccc-cccc-ccccchhhhhh---hhhhHHHHHHHHhhcccchh---hhhccC
Confidence 00 00 0001111 0011 22333222111 11111111111111111111 111111
Q ss_pred Cccc--cCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 042477 323 SRFK--IPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ 400 (478)
Q Consensus 323 ~~~~--~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 400 (478)
.+ ...+.+.....+...+..++.+++ .+| .++.+++........++.+.......
T Consensus 239 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 295 (352)
T PF07690_consen 239 --FSGPSQAGLLFSIFGIVGIIGSLLAGRL----SDR---------FGRRRRLLIAILLLILGALGLLLLPF-------- 295 (352)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------TTCHHHHHHHHHHHHHHHHHHCCSHH--------
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------cCcHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 11 111222233333333333444333 222 22233444444444443333322210
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHH
Q 042477 401 AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSA 461 (478)
Q Consensus 401 ~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~ 461 (478)
..+..+.....++.|++.+...+...+++.+.+|++.||+++|+.++..++|+.++|
T Consensus 296 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 ----SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp ----HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 124456666778899999999999999999999999999999999999999999986
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=207.84 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=139.8
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
......++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++..+
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------ 79 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA------------ 79 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH------------
Confidence 34455668889999999999999999999999999999999996 99999999999999999998888
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
.+.+.++++|++.|+|.+...+...+++.|.+|+++ |++.+++.....++|..+++.+++
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE--------------------RATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH--------------------HHHHHHHHHHhchHHHHHHHHHHH
Confidence 678999999999999999999999999999999877 999999999999999999999999
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 173 YIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 173 ~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
++.+..+|++.|.+.++..++..++.++.
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 140 WILIHFSWQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHhhhe
Confidence 98888999999998877666555544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=207.34 Aligned_cols=325 Identities=13% Similarity=0.143 Sum_probs=216.0
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchH
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSS 96 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 96 (478)
...+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++..+ ++.+
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------~~~~ 98 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSALA------------WNFT 98 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHh------------ccHH
Confidence 3456789999999999999999999999999999999996 99999999999999999998888 7899
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc
Q 042477 97 FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD 176 (478)
Q Consensus 97 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~ 176 (478)
.++++|+++|++.+...|...+++.|++|+++ |+++++++....++|..+||.+++.+.+
T Consensus 99 ~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~g~~~~~~~~g~~ig~~l~~~l~~ 158 (390)
T PRK03545 99 VLLISRIGIAFAHAIFWSITASLAIRVAPAGK--------------------KAQALSLLATGTALAMVLGLPLGRVIGQ 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh--------------------hhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999888999999999999877 9999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccc
Q 042477 177 TFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKP 256 (478)
Q Consensus 177 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
++|||+.|.+.+++.++.....+...|+. |+++ +++.++
T Consensus 159 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~~----~~~~--~~~~~~----------------------------------- 197 (390)
T PRK03545 159 YLGWRTTFLAIGGGALITLLLLIKLLPLL----PSEH--SGSLKS----------------------------------- 197 (390)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCC--cchHHH-----------------------------------
Confidence 89999999988876655544433322211 1110 000000
Q ss_pred cccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcch
Q 042477 257 LCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSA 335 (478)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 335 (478)
+ .+ +.+.+.+...... +......+..+. ....+ ..+..|. -....+.....
T Consensus 198 --------------~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---l~~~~g~-s~~~~~~~~~~ 249 (390)
T PRK03545 198 --------------L-----PL-LFRRPALVSLYLLTVVVVTAHFTAYS----YIEPF---VQQVAGL-SENFATLLLLL 249 (390)
T ss_pred --------------H-----HH-HHhCcHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHhcCC-CccHHHHHHHH
Confidence 0 00 1111111111111 111111111111 11111 1111110 01112222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHH
Q 042477 336 ITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEY 415 (478)
Q Consensus 336 ~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 415 (478)
..+..++...+. +|+.+ +.++ +++..+..+.+++....... ..+.+.+++..
T Consensus 250 ~~~~~~~g~~~~--------g~l~d-----r~~~-~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~ 301 (390)
T PRK03545 250 FGGAGIIGSVLF--------SRLGN-----RHPS-GFLLIAIALLLVCLLLLLPA--------------ANSEWHLSVLS 301 (390)
T ss_pred HHHHHHHHHHHH--------HHHhh-----ccch-hHHHHHHHHHHHHHHHHHHH--------------hchHHHHHHHH
Confidence 333333333333 33322 2222 33555555555554433222 12455666677
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 416 VLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 416 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
++.|++.....+.....+.+..|+ .|++++|+++....+|..+|+.+.|.+.+..+
T Consensus 302 ~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g 357 (390)
T PRK03545 302 IFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHLG 357 (390)
T ss_pred HHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 888888877777788888888774 78999999999999999999999998887655
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=211.55 Aligned_cols=341 Identities=14% Similarity=0.118 Sum_probs=229.4
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..++++.+.++++.|+++++|+++.+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..++.++..+.
T Consensus 17 ~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~~~~~~~~~~-- 93 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFASGFIAIPLV-- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHHHHHHHHHH--
Confidence 566778888899999999999999999999999999999999999999999996 99999999999999998888777
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
++.+.++++|.+.+.+.+...|...++..|.+|+++ |++.+++.+...++
T Consensus 94 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~l 143 (395)
T PRK10054 94 ----------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS--------------------KTKIFSLNYTMLNI 143 (395)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH--------------------HHHHHHHHHHHHHH
Confidence 667778888888888888888889999999998776 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
|..+||.+++++.. .+|+..|.+.+++.++..++..+..++.+ +++++ + ++ .
T Consensus 144 g~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~-~-~~--~--------------------- 195 (395)
T PRK10054 144 GWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE--KAIAT-E-TG--S--------------------- 195 (395)
T ss_pred HHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc--ccccc-c-hh--h---------------------
Confidence 99999999998875 79999999888777666554444333211 11110 0 00 0
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhhhccccccC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVIFQQPVTFFTKQGMAMKRNI 321 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (478)
.++. ++ ..+.|+++..... ++......... .....+.....+
T Consensus 196 ---------------------------~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~-- 238 (395)
T PRK10054 196 ---------------------------VWSP---SV-LLQDKALLWFTCSGFLASFVSGAFA----SCISQYVMVVAD-- 238 (395)
T ss_pred ---------------------------hhhh---hh-hccCceehHHHHHHHHHHHHHHHhh----hhHHHHHHHhcc--
Confidence 0000 00 0111111111111 11111111111 111111111111
Q ss_pred CCccccCc---hhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042477 322 GSRFKIPP---ATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRS 398 (478)
Q Consensus 322 g~~~~~~~---~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 398 (478)
.+.+. +.+...+....+...+. .+|+.+ +.++++.+..|+.+.++++......
T Consensus 239 ---~~~~~~~~g~~~~~~~~~~~~~~~~--------~g~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~-------- 294 (395)
T PRK10054 239 ---SDFAEKVVAVVLPVNAAMVVSLQYS--------VGRRLN-----AANIRPLMTAGTLCFVIGLVGFIFS-------- 294 (395)
T ss_pred ---cchHHHHHHHHHHhhhhheeeehhH--------HHHHHc-----cCCchhHHHHHHHHHHHHHHHHHHc--------
Confidence 11111 12222222222222222 223222 3445566777777777776555432
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 399 KQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 399 ~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
..+.+.+.+..++.++|+....|..++++.+.+|+++||++.+..+ ...+|..+|+.+.+.+.+..+
T Consensus 295 ------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 295 ------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 1234445567789999999999999999999999999999999766 566899999999998877654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-22 Score=201.53 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=221.4
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
...++.....+.++.|+++++|.++.+.+++.+.+.+...+++++.|+++||+ ||||++..+.++..++.+.+..+...
T Consensus 26 ~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (399)
T PRK05122 26 ISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLAGLL 104 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 34455666777899999999999999999999999999999999999999996 99999999999988877766554221
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
... . ..+...+++.|+++|+|.+...+...+++.|.+|+++ |+++++++....++|
T Consensus 105 ~~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g 160 (399)
T PRK05122 105 AAW---P-VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH--------------------TGRVISWNGIATYGA 160 (399)
T ss_pred hcc---c-hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh--------------------hccchhhhhhhhhHH
Confidence 000 0 0246688999999999999999999999999998877 999999999999999
Q ss_pred hhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCC
Q 042477 164 SLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPID 243 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (478)
..+|+.+++++.+.+||+..|.+..+...+..+ +.++ .++.++++ ++..
T Consensus 161 ~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~----~~~~----------------------- 209 (399)
T PRK05122 161 LAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL---LARP-RPAVPPVK----GERL----------------------- 209 (399)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---HHhc-CCCCCCCC----ccch-----------------------
Confidence 999999999998889999988776554332222 2211 11111110 0000
Q ss_pred CCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 244 KSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIW-TMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
.+ .+..|+.+.....+ .....+.. .......+.. +.+
T Consensus 210 --------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~-- 247 (399)
T PRK05122 210 --------------------------PF--------RRVLGRVWPYGMGLALASIGFGT----IATFITLYYA--ARG-- 247 (399)
T ss_pred --------------------------hH--------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--Hcc--
Confidence 00 01111111111111 11111111 1111111111 111
Q ss_pred CccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 042477 323 SRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
.+ ..+.......+..++..++.+++ .+ +.++++.+..+.++.++++......
T Consensus 248 --~~-~~~~~~~~~~~~~~~~~~~~g~l----~~---------r~~~~~~~~~~~~~~~~~~~~~~~~------------ 299 (399)
T PRK05122 248 --WD-GAALALTLFGVAFVGARLLFGNL----IN---------RLGGLRVAIVSLLVEILGLLLLWLA------------ 299 (399)
T ss_pred --cc-cchHHHHHHHHHHHHHHHHHHHH----HH---------HhccHHHHHHHHHHHHHHHHHHHHh------------
Confidence 11 11111222222233333333222 22 2334455666666666666555432
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Q 042477 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFT 471 (478)
Q Consensus 403 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~ 471 (478)
.+.+.+++..++.|++.....|.......+..|++.||+++|+++....+|..+++.+.+.+.+..
T Consensus 300 ---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 365 (399)
T PRK05122 300 ---PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF 365 (399)
T ss_pred ---ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 244556667788999998888888888889999999999999999999999999998888876543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-22 Score=207.55 Aligned_cols=377 Identities=12% Similarity=0.079 Sum_probs=230.5
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
.....++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++..+ +
T Consensus 22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------~ 88 (485)
T TIGR00711 22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGVA------------P 88 (485)
T ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhCc------------C
Confidence 3444566678999999999999999999999999999999996 99999999999999999998887 7
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
+...++++|+++|+|.+...|...+++.|.+|+++ |++++++++...++|..+||.++++
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK--------------------RGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHHHhhhhhccHhH
Confidence 78999999999999999999999999999999877 9999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHH----HHHhcccCCCCCCCCCCcccc
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKV----AASKLKNGKAISPIDKSDAME 249 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 249 (478)
+.++.+|++.|++.++..+++.++..+..++.+ ++.. ++.+.....+.. .......+.....+.+. .+
T Consensus 149 l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~ 220 (485)
T TIGR00711 149 IIENYHWRWIFLINVPIGIIVVVVAFFILPRDK---PAAS---ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDS--NE 220 (485)
T ss_pred hccCcCceehhhhhhHHHHHHHHHHHHHcCCcc---cccc---CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCc--hH
Confidence 999999999999888766665555444433211 1110 111111111000 00000000000000000 00
Q ss_pred cccc--ccc-----cccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 250 LELQ--EKP-----LCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 250 ~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
.... ... ....+... .++....+..++++.....+..+.....++... .....+ +....|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~---~~~~~g 287 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTD------DNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSF----YLLPLY---LQQVLG 287 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC------CCCccCHHHHcCCChHHHHHHHHHHHHHHHHHH----HHHHHH---HHHhcC
Confidence 0000 000 00000000 000000000111111111111111111111111 111111 111111
Q ss_pred CccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 042477 323 SRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
. -....+.......+..++..++..++ .+ +.++++.+..|..+.+++..+.....
T Consensus 288 ~-s~~~~g~~~~~~~~~~~~~~~~~g~l--------~~-----r~~~~~~~~~g~~~~~~~~~~~~~~~----------- 342 (485)
T TIGR00711 288 Y-TALQAGLHILPVGLAPMLSSPIAGRM--------GD-----KIDPRKLVTIGLILYAVGFYWRAFTF----------- 342 (485)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh-----hcCcHHHHHHHHHHHHHHHHHHhccC-----------
Confidence 0 01112333333344444444444333 22 34445556777777777766554210
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 403 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
....+.+.++...++.|+|.+...++......+..|++.+|+++|+.++.+.+|+.+|+.+.+.+.+
T Consensus 343 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123455566668889999998888888888899999999999999999999999999998887754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=197.65 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=129.3
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
++.+++.....+ ..+++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++..++.....+.......
T Consensus 3 ~~~~~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~---- 76 (368)
T TIGR00903 3 SQAIWVTFSPVL-SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP---- 76 (368)
T ss_pred hhHHHHHHHhhH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh----
Confidence 445555555555 455679999999999999999999999999999999996 99998776655555543322222
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.+...++++|+++|+|.+.. ++..+..+|++|+++ |++++++.+...++|.
T Consensus 77 --------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~--------------------r~~a~~~~~~~~~lG~ 127 (368)
T TIGR00903 77 --------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER--------------------RDLVISLLSFAMYLGI 127 (368)
T ss_pred --------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHHH
Confidence 46889999999999999864 555566699999776 9999999999999999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.+++.+++++.+++|||..|.+.+++.++..++.++..
T Consensus 128 ~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 128 IFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999899999999987766555544444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=198.18 Aligned_cols=339 Identities=13% Similarity=0.103 Sum_probs=216.8
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
..++.....+.++.|+++++|.|+.+.+++.+.+.+...+++++.|+++||+ ||||++..+.+...++.+........+
T Consensus 27 ~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~ 105 (392)
T PRK12382 27 TYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAGLAYLLAAILP 105 (392)
T ss_pred HHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3344455566788899999999999999999999999999999999999996 999999999888777654433221100
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.. ...+...++++|+++|+|.+...|...+++.|.+|+++ |+++++++....+.|.
T Consensus 106 ~~----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~a~~~~~~~~~~g~ 161 (392)
T PRK12382 106 VS----APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH--------------------SGKVMSWNGMAMYGAL 161 (392)
T ss_pred cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc--------------------cchhhhHHHHHHHHHH
Confidence 00 01467889999999999999988999999999998777 9999999999999999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
.+||.+++++.+.+||+..+.+..+..++.. .+. ++.++.++++ +++.+
T Consensus 162 ~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~~-------------------------- 210 (392)
T PRK12382 162 AAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHA-GERPS-------------------------- 210 (392)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCc-ccCch--------------------------
Confidence 9999999999888999987765544322221 111 1111111110 00000
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHhccCcchhhhhhccccccCCC
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRL-LPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGS 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 323 (478)
. .+..|..++. .........+..... ....+.. +..
T Consensus 211 --------------------------~--------~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~--~~~--- 247 (392)
T PRK12382 211 --------------------------L--------WSVVGLIWKPGLGLALQGVGFAVIGT----FVSLYFA--SKG--- 247 (392)
T ss_pred --------------------------H--------HHHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHH--hcC---
Confidence 0 0000111110 001111111111110 0011100 111
Q ss_pred ccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 042477 324 RFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA 403 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (478)
++ ..+.......+..++..++.+++ .+ +.++++.+..+..+.+++++.....
T Consensus 248 -~~-~~~~~~~~~~~~~~~~~~~~g~l----~~---------r~g~~~~~~~~~~~~~~~~~~~~~~------------- 299 (392)
T PRK12382 248 -WA-MAGFTLTAFGGAFVLMRVLFGWM----PD---------RFGGVKVAIVSLLVETVGLLLLWLA------------- 299 (392)
T ss_pred -Cc-hhHHHHHHHHHHHHHHHHHHHHH----HH---------hcCCCeehHHHHHHHHHHHHHHHHc-------------
Confidence 11 11122222222233333333332 22 2333455666777777766554432
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 404 KPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 404 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.+.+...+..++.+++.+...|.......+..|++.||+++|+++....+|+.+++.+.+.+.+..+
T Consensus 300 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g 366 (392)
T PRK12382 300 --PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG 366 (392)
T ss_pred --ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2345556677888999888888888888999999999999999999999999999999998876544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=198.95 Aligned_cols=334 Identities=14% Similarity=0.069 Sum_probs=215.2
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchH
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSS 96 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 96 (478)
...+.+++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+++..+ .+.+
T Consensus 38 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------~~~~ 104 (406)
T PRK11551 38 APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFSLATAQA------------WDFP 104 (406)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHh------------ccHH
Confidence 3455678999999999999999999999999999999996 99999999999999988887777 6788
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc
Q 042477 97 FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD 176 (478)
Q Consensus 97 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~ 176 (478)
.+++.|++.|++.+...|...+++.|.+|+++ |++++++.+...++|..+++.+++.+.+
T Consensus 105 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (406)
T PRK11551 105 SLLVARLLTGVGLGGALPNLIALTSEAVGPRL--------------------RGTAVSLMYCGVPFGGALASVIGVLAAG 164 (406)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999877 9999999999999999999999988888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccc
Q 042477 177 TFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKP 256 (478)
Q Consensus 177 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
..+|+..|++.+++.++..++.....++.++..+++ +. ++ +..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~------------------------~~---~~~~~~--- 210 (406)
T PRK11551 165 DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA----GA------------------------GK---QRAPVL--- 210 (406)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc----Cc------------------------ch---hhhhhH---
Confidence 899999998877655544443333222211100000 00 00 000000
Q ss_pred cccCCCCCcccccCCCCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcch
Q 042477 257 LCCNDQNKELDDELENPKNVKHAVQNVKILLRLLP-IWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSA 335 (478)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 335 (478)
...+++ .+ .++...... .+......+....+ ...+ +.. .|. -....+.....
T Consensus 211 -----------~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~----~p~~---~~~-~g~-s~~~~~~~~~~ 263 (406)
T PRK11551 211 -----------RALFGE------GR-ATATLLLWISYFFTLIVLYFLLNW----LPSL---LVG-QGL-SRSQAGLVQIA 263 (406)
T ss_pred -----------HHHhhh------hh-hhHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHh-CCC-ChhhhhHHHHH
Confidence 000000 01 111111111 11111111111111 1111 111 110 01122333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHH
Q 042477 336 ITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEY 415 (478)
Q Consensus 336 ~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 415 (478)
..+..++...+..++. +|. ++++.+..+++..+++++..... .+.+.+.+..
T Consensus 264 ~~~~~~~~~~~~g~l~----dr~---------g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 315 (406)
T PRK11551 264 FNIGGALGSLLIGALM----DRL---------RPRRVVLLIYAGILASLAALAAA---------------PSFAGMLLAG 315 (406)
T ss_pred HHHHHHHHHHHHHHHH----HHH---------hHHHHHHHHHHHHHHHHHHHHhc---------------CcHHHHHHHH
Confidence 3344444444444433 332 12233344444444444333221 2344455566
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 416 VLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 416 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
++.+++.....+...++..+..|++.||+++|+.+....+|+.+++.+.+.+.+..+
T Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~ 372 (406)
T PRK11551 316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR 372 (406)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence 777777777778888999999999999999999999999999999999998876543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=202.21 Aligned_cols=166 Identities=14% Similarity=0.058 Sum_probs=144.2
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+..+.++.+...+|.|. +++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++..+
T Consensus 21 ~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~--- 95 (471)
T PRK10504 21 MQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSLFCALS--- 95 (471)
T ss_pred HHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHh---
Confidence 44455666677777777 47999999999999999999999999999999996 99999999999999988887776
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
++...++++|+++|+|.+...|...+++.|.+|+++ |++.+++.....++|
T Consensus 96 ---------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g 146 (471)
T PRK10504 96 ---------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ--------------------YMAAMTFVTLPGQVG 146 (471)
T ss_pred ---------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999998776 899999999999999
Q ss_pred hhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 164 SLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
..+||.+++++.++.||++.|.+..+...++.++.....+
T Consensus 147 ~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 147 PLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999899999999988766666555544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-21 Score=195.10 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=135.0
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
.....++.+++|.++.+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.++.... .
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~------------~ 103 (398)
T TIGR00895 37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALA------------T 103 (398)
T ss_pred HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHc------------c
Confidence 3445566678999999999999999999999999999999996 99999999999999998888777 6
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.....++|..+++.++++
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF--------------------RGTAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh--------------------hchhHhhHhhHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999877 9999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+.+..||+..|.+.++...+..++.+.
T Consensus 164 l~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 164 LIPVFGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred HhhcccceeehhhhhhHHHHHHHHHHH
Confidence 988899999998886554444443333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=197.74 Aligned_cols=147 Identities=15% Similarity=0.223 Sum_probs=131.4
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.....+++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++..+ .+
T Consensus 33 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~------------~~ 99 (405)
T TIGR00891 33 LVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFA------------PG 99 (405)
T ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh------------cc
Confidence 344566789999999999999999999999999999999996 99999999999999999888887 67
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.....++|..+++.+++.+
T Consensus 100 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 100 YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--------------------RNKASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999877 99999999999999999999999988
Q ss_pred ccccc--hhHHHHHHHHHHHHH
Q 042477 175 QDTFG--WVIGFAIPTIAMLTS 194 (478)
Q Consensus 175 ~~~~g--~~~~f~~~~~~~~~~ 194 (478)
.+..+ |++.|.+.++..++.
T Consensus 160 ~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 160 VPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHhcCccHHHHHHHHHHHHHHH
Confidence 77665 999998766544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-21 Score=191.80 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=136.1
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHH-HHHHHHHhhHHhhhcc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILA-FSFIYVLGLMALTSTA 81 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~-~~~~~~ig~~l~~~~~ 81 (478)
++-.+++....+.++.|+++++|.++.+.+++.+.+.+...+..++.|+++||+ ||||.++. +..+..++.++...+
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~- 84 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAWN- 84 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHhc-
Confidence 455677788888999999999999999999999999999999999999999996 99887654 555556666676666
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchh--hhhhHHHH
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSL--FFKWWYFG 159 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~ 159 (478)
++.+.+++.|++++.+.+...|...++..|..|+++ |.+ ..+.....
T Consensus 85 -----------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 133 (375)
T TIGR00899 85 -----------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG--------------------REAVMFSSVMRAQ 133 (375)
T ss_pred -----------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc--------------------hhhHHHHHHHHHH
Confidence 667888888999888877788888888888776544 443 36777788
Q ss_pred HhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 160 VCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 160 ~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
.++|..+||.+++++.+.+|||+.|++.++..++..++.++..|
T Consensus 134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999988899999999988876666555444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=196.31 Aligned_cols=154 Identities=10% Similarity=0.119 Sum_probs=136.2
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
....++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++...+ .+
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------~~ 82 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS------------TS 82 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh------------hh
Confidence 345678889999999999999999999999999999999996 99999999999999999998888 67
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh-hhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI-TLMSY 173 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~-~~~~~ 173 (478)
.+.+++.|++.|++.+...|...+++.|.+|+++ |++++++.....++|..+++ .+++.
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~~~~~~ 142 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE--------------------RGTWVSFWNCSHNVGGGLLPPLVLFG 142 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh--------------------heeeEeehhccchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999877 99999999999999999999 56667
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
+.+..+|++.|.+.+++.++..++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 143 IAELYSWHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence 7777899999988877665554444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-21 Score=194.78 Aligned_cols=150 Identities=14% Similarity=0.224 Sum_probs=134.8
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
...++. +.+++|.++++.++..+.+.+...++.++.|+++||+ |||+++..+.++..++.+++..+
T Consensus 40 ~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 40 VSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 334444 4578999999999999999999999999999999996 99999999999999999888887
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
++.+.+++.|+++|++.|...|...+++.|++|+++ |+++.++.....++|..+||.+++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--------------------~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT--------------------VPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999877 999999999999999999999999
Q ss_pred hhccccchhHHHHHHHHHHHHHHH
Q 042477 173 YIQDTFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 173 ~i~~~~g~~~~f~~~~~~~~~~~~ 196 (478)
++.+.+||++.|.+.+++.+++.+
T Consensus 166 ~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 166 FLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHH
Confidence 999989999999987765554433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=188.57 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=146.0
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
+-+-+.+++|.+..++|+.++.|.++..++.|+...++||+ .||++++..+.++.+|.++.+++ +++
T Consensus 35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lFi~~n~l~alA------------p~f 101 (394)
T COG2814 35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALFIVSNLLSALA------------PSF 101 (394)
T ss_pred chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHh------------ccH
Confidence 44566789999999999999999999999999999999996 99999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc
Q 042477 96 SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ 175 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~ 175 (478)
..++++|++.|+..|.+.+...++.++..|+++ |+++.+....+..++..+|..++.++.
T Consensus 102 ~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~--------------------~~~Aiaiv~~G~tlA~v~GvPLGt~ig 161 (394)
T COG2814 102 AVLLLARALAGLAHGVFWSIAAALAARLVPPGK--------------------RGRALALVFTGLTLATVLGVPLGTFLG 161 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc--------------------hhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999999999988 999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 176 DTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 176 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
+.+|||..|.+.+.+.+++.+..+...|
T Consensus 162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 162 QLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999988888887777766665
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=193.36 Aligned_cols=338 Identities=12% Similarity=0.047 Sum_probs=213.5
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
...+.+++++++|+++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.++...+
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~------------ 88 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA------------ 88 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH------------
Confidence 34567788899999999999999999999999999999999996 99999999999999999998888
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
++.+.++++|++.|+|.+...+.....+.+++| ++ |+++.++.....++|..+++.+.+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~ 147 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK--------------------RGLASGIIIGGYGLGSFILSPLIT 147 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc--------------------cHHHHHHHHHhcchhHhHHHHHHH
Confidence 788999999999999999888888888888876 34 899999999999999988777767
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCccccccc
Q 042477 173 YIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELEL 252 (478)
Q Consensus 173 ~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (478)
.+.+..|||+.|++.++..++..+..++..+..+++++++ + ++.+
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------------------------------~~~~- 192 (377)
T TIGR00890 148 SVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT----N------------------------------IEVS- 192 (377)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcccc----C------------------------------cccc-
Confidence 6767789999999888766665544443332111000000 0 0000
Q ss_pred cccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhh
Q 042477 253 QEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATL 332 (478)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 332 (478)
+ ++.+..+ ..+++..+.....+.......... ...+..+.. + .+. -+...+..
T Consensus 193 -~-----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~--~~~-~~~~~~~~ 245 (377)
T TIGR00890 193 -V-----------------KDYTVWE-MLRTPQFWVLYLSFFLNAVSGLLL---IGLYKPYGQ--S--LGL-SDGFLVLA 245 (377)
T ss_pred -h-----------------hhhhHHH-HHcCccHHHHHHHHHHHhHHHHHH---HHHHHHHHH--H--cCC-CHHHHHHH
Confidence 0 0000000 111111111111111111110000 011111111 1 110 01112233
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHH
Q 042477 333 QSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLL 412 (478)
Q Consensus 333 ~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 412 (478)
.....+..++..++..++. +|. ++++.+..+..+.+++.+...... ....+...
T Consensus 246 ~~~~~~~~~~~~~~~g~l~----dr~---------g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 299 (377)
T TIGR00890 246 VSISSIFNGGGRPFLGALS----DKI---------GRQKTMSIVFGISAVGMAAMLFIP-------------MLNDVLFL 299 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHH---------hhhhhhhHHHHHHHHHHHHHHHcc-------------cchhHHHH
Confidence 3334444444444444433 232 223345566666666665544321 11222233
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 413 PEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 413 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
...++.+++.+...+....+..|..|++.|++++|+.+....+|+.+++.+.+.+.+..+
T Consensus 300 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 359 (377)
T TIGR00890 300 ATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG 359 (377)
T ss_pred HHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334555666665666667888999999999999999999999999999999998866544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=198.54 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=138.1
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
.....++++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++..++++..++.++.+++ +
T Consensus 28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~------------~ 94 (412)
T TIGR02332 28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFA------------T 94 (412)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh------------c
Confidence 3455688999999999999999999999999999999999996 99999999999999999999888 7
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
+...+++.|+++|++.|...|....++.|++|+++ |++.+++++...++|..+++.++++
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------rg~~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF--------------------RARANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999877 9999999999999999999999988
Q ss_pred hcc------ccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 174 IQD------TFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 174 i~~------~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
+.+ ..|||+.|.+.++..++..++.++..
T Consensus 155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 753 46999999998776655544444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-21 Score=195.98 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=131.0
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.+..++++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.++..++ .+
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~------------~~ 105 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSGLA------------SG 105 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH------------hH
Confidence 444567789999999999999999999999999999999996 99999999999999999998888 77
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
.+.++++|++.|+|.|...+....++.|.+|+++ |+++.+++..+..+|.++++.+.+.+
T Consensus 106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL--------------------KSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH--------------------hhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999887 99999999999999999999999988
Q ss_pred ccccchhHHHHHHHH
Q 042477 175 QDTFGWVIGFAIPTI 189 (478)
Q Consensus 175 ~~~~g~~~~f~~~~~ 189 (478)
.+..+|++.|++..+
T Consensus 166 ~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 166 AEAYGWRAAFFVGLL 180 (426)
T ss_pred cccCCHHHHHHHHHH
Confidence 888999999987554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=195.82 Aligned_cols=349 Identities=13% Similarity=0.038 Sum_probs=221.1
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
..++.......++.+. ++++.++.+.+++.+.+.+...+++++.|+++||+ |||+++..+.++..++.+.+.......
T Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T PRK10489 29 SIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALNAFLP 106 (417)
T ss_pred HHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHHHHcC
Confidence 3444444445566665 56788999999999999999999999999999996 999999998888887776654321100
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.++.+.+++.|++.|++.+...++..+++.|.+|+++ |+++.++.+...++|.
T Consensus 107 -------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~ 159 (417)
T PRK10489 107 -------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN--------------------LMQAGAITMLTVRLGS 159 (417)
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH--------------------HHHHHHHHHHHHhHHH
Confidence 0457788899999999988888899999999998876 8999999999999999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
.+||.+++++.+..+|++.|.+.++..+++.++.+.. ++ .+++.++++++..+..+
T Consensus 160 ~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~---~~~~~~~~~~~~~~~~~-------------------- 215 (417)
T PRK10489 160 VISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PA---LPPPPQPREHPLRSLLA-------------------- 215 (417)
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CC---CCCCCcccccchHHHHH--------------------
Confidence 9999999999888899999988877666655444332 21 11111000011000000
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCc
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSR 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 324 (478)
.+ +. +.+.+.+.... +..... .........+..+ ..+..+.
T Consensus 216 -------------------------~~-----~~-~~~~~~~~~~~-~~~~~~---~~~~~~~~~~p~~---~~~~~g~- 256 (417)
T PRK10489 216 -------------------------GF-----RF-LLASPVVGGIA-LLGGLL---TMASAVRVLYPAL---ADEVWQM- 256 (417)
T ss_pred -------------------------HH-----HH-HHcChHHHHHH-HHHHHH---HHHHhHHHhhHHH---HHhccCC-
Confidence 00 00 11111111111 111111 1111111111111 1111111
Q ss_pred cccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 042477 325 FKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAK 404 (478)
Q Consensus 325 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (478)
-....+.+.....+..++...+.++ ..+ +.++.+.+..+.++.+++++.....
T Consensus 257 ~~~~~g~~~~~~~~g~~ig~~~~~~--------l~~-----~~~~~~~l~~~~~~~~~~~~~~~~~-------------- 309 (417)
T PRK10489 257 GAAQIGLLYAAVPLGAALGALTSGW--------LAH-----SARPGLLMLLSTLGSFLAVGLFGLM-------------- 309 (417)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHHHH--------hhh-----ccCcchHHHHHHHHHHHHHHHHHcc--------------
Confidence 0111233333333333333333322 211 2223345666666666666554432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 405 PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 405 ~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
.+.+.+.+..++.+++.+...+...++..+..|++.||+++|+++...++|..+|+.+.|.+.+..+.
T Consensus 310 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~ 377 (417)
T PRK10489 310 -PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP 377 (417)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Confidence 24455566777888888888888889999999999999999999999999999999999998876553
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=190.83 Aligned_cols=331 Identities=12% Similarity=0.051 Sum_probs=212.7
Q ss_pred hhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCC
Q 042477 9 FKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESP 88 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~ 88 (478)
++.+.+.+ +.+++++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+++..++.+..++.+++.++
T Consensus 25 ~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a-------- 94 (393)
T PRK09705 25 LTSVGPLL-PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY-------- 94 (393)
T ss_pred hhccchhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC--------
Confidence 34444444 456689999999999999999999999999999999996 99999999999999999999998
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh
Q 042477 89 ANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 168 (478)
++...++++|+++|+|.+...+..+.++.|++| ++ |+++++.+....+.|..+|+
T Consensus 95 ----~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~--------------------~~~~~g~~~~~~~~g~~~g~ 149 (393)
T PRK09705 95 ----PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR--------------------TPLVMGLWSAALMGGGGLGA 149 (393)
T ss_pred ----cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc--------------------chhHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999886 55 89999999999999999999
Q ss_pred hhhhhhcccc-chhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCcc
Q 042477 169 TLMSYIQDTF-GWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDA 247 (478)
Q Consensus 169 ~~~~~i~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (478)
.+++++.++. +||..+.+.++..++..+..+...+ ++|+++ ++
T Consensus 150 ~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~----------------------------- 193 (393)
T PRK09705 150 AITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSA----REVASS---HK----------------------------- 193 (393)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc----CCCccc---cC-----------------------------
Confidence 9999887765 8999876655443333322222111 111110 00
Q ss_pred ccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHH-HHHHHHHHHHHHhccCcchhhhhhccccccCCCccc
Q 042477 248 MELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLL-PIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFK 326 (478)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 326 (478)
++ .. ..+. ..+. +.+... ........++......+..+. +. |. -.
T Consensus 194 ~~------~~------------~~~~------l~~~-~~~~l~~~~~~~~~~~~~~~~~lp~~l~------~~--g~-s~ 239 (393)
T PRK09705 194 TT------TT------------PVRV------VFTP-RAWTLGVYFGLINGGYASLIAWLPAFYI------EI--GA-SA 239 (393)
T ss_pred CC------cC------------Cccc------ccCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hc--CC-Ch
Confidence 00 00 0000 1111 111111 111111222222222211111 11 10 01
Q ss_pred cCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccc
Q 042477 327 IPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPI 406 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (478)
...+.......+..++..++.+++ .+ +.++++.+..++.+..++.+..... +.
T Consensus 240 ~~ag~~~~~~~i~~i~g~~~~g~l----~~---------r~~~~~~~~~~~~l~~~~~~~~~~~--------------~~ 292 (393)
T PRK09705 240 QYSGSLLALMTLGQAAGALLMPAM----AR---------HQDRRKLLMLALVLQLVGFCGFIWL--------------PL 292 (393)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----Hh---------hccchHHHHHHHHHHHHHHHHHHHc--------------cc
Confidence 112333333344444444443322 22 2333455666666666665544322 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC-chhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVP-VRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 407 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
+...+ ..++.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+.+.+..|+
T Consensus 293 ~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~ 358 (393)
T PRK09705 293 QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN 358 (393)
T ss_pred hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11122 2345577777777777666677774 68899999999999999999999999999887764
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=190.98 Aligned_cols=340 Identities=11% Similarity=0.026 Sum_probs=217.2
Q ss_pred hhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCC
Q 042477 12 VASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANT 91 (478)
Q Consensus 12 ~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~ 91 (478)
..+.++. +.+++|.++.+.++..+.+.++..++.++.|+++||+ |||+++..+.++..++.++...+
T Consensus 32 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~----------- 98 (406)
T PRK15402 32 IQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA----------- 98 (406)
T ss_pred HhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344443 5578999999999999999999999999999999996 99999999999999998888877
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 92 TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 92 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
++.+.+++.|+++|++.+...+...+++.|.+|+++ |.+.+++.+....+|..+||.++
T Consensus 99 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~g~~i~ 157 (406)
T PRK15402 99 -QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD--------------------AIKITALMANVALLAPLLGPLVG 157 (406)
T ss_pred -ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999888889999999998776 88888988888889999999999
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCcccccc
Q 042477 172 SYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELE 251 (478)
Q Consensus 172 ~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (478)
+++.++.+|++.|++.++..+++.+..+...|+.++ +++ ++.+..+..+
T Consensus 158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~--------------------------- 206 (406)
T PRK15402 158 AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG--RVG--EKLSLKELGR--------------------------- 206 (406)
T ss_pred HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc--ccc--ccccHHHHHH---------------------------
Confidence 999888999999988777766655544333322110 000 0000000000
Q ss_pred ccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccc-cCch
Q 042477 252 LQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFK-IPPA 330 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~ 330 (478)
.+ +. +...++++...............+......+. .+..+ .+ ...+
T Consensus 207 ------------------~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~g--~~~~~~g 254 (406)
T PRK15402 207 ------------------DY-----KL-VLKNRRFVAGALALGLVSLPLLAWIALSPVIL------ISGEQ--LSSYEYG 254 (406)
T ss_pred ------------------HH-----HH-HHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHhC--CCHHHHH
Confidence 00 00 11111111111111111000011100001111 11111 11 0111
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHH
Q 042477 331 TLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFW 410 (478)
Q Consensus 331 ~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (478)
.......+..++..++. +++.+ +.++++.+..+.++.+++..+....... ...+.++
T Consensus 255 ~~~~~~~~~~~~g~~~~--------g~l~~-----r~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~ 311 (406)
T PRK15402 255 LLQVPVFGALIAGNLTL--------ARLTS-----RRPLRSLIRMGLWPMVAGLLLAALATVI----------SSHAYLW 311 (406)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHHHHc----------ccccHHH
Confidence 11111112222222222 23322 3444556777777777776665543110 1234566
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 411 LLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 411 li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
+++..++.+++.+...+..+..... .+++.||+.++++++.+.+|..+|+.+.+.+.+..+
T Consensus 312 ~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 312 LTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 7778888999999888777666644 455889999999999999999999999998876554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=185.84 Aligned_cols=318 Identities=20% Similarity=0.212 Sum_probs=236.5
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..+.++.....++.|. +++|.++.+.+++.+...+...++.++.|+++||+ |||+.+..+..+..++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~~-- 84 (352)
T cd06174 9 FLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAFA-- 84 (352)
T ss_pred HHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHh--
Confidence 456677777777787777 46799999999999999999999999999999996 99999999999999999998888
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++
T Consensus 85 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 134 (352)
T cd06174 85 ----------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE--------------------RGRALGLFSAGFGL 134 (352)
T ss_pred ----------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc--------------------hhhhhhHHHHHHHH
Confidence 678999999999999999999999999999999877 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
|..++|.+++.+.+..+|+..|.+.++..+++.+...+.. +.
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~------------------------------ 176 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--------RL------------------------------ 176 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------HH------------------------------
Confidence 9999999999999888999999988877666655544332 00
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
.+...............+......+.. +..+
T Consensus 177 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 207 (352)
T cd06174 177 -------------------------------------------LLLLALAFFLLSFGYYGLLTYLPLYLQ------EVLG 207 (352)
T ss_pred -------------------------------------------HHHHHHHHHHHHhHHHHHHHHHHHHHH------HhcC
Confidence 000000000000000111111111111 0000
Q ss_pred CccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 042477 323 SRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQ-RMRIGMFLTSIAMVIAAAVETKRLQRSKQA 401 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (478)
. -....+.......+...+..++..++ .+|.+ +++ .+..+..+..++.+.....
T Consensus 208 ~-~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~----------- 262 (352)
T cd06174 208 L-SAAEAGLLLSLFGLGGILGALLGGLL----SDRLG---------RRRLLLLIGLLLAALGLLLLALA----------- 262 (352)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---------hhhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 0 01223344445555555555555443 33332 223 5677777777777666543
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 042477 402 EAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 402 ~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
.+.+...+..++.+++.....+...++..|..|++.|++.+|+.+...++|+.+++.+.+.+.+.
T Consensus 263 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~ 327 (352)
T cd06174 263 ----PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327 (352)
T ss_pred ----ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23667778889999999999999999999999999999999999999999999999999988753
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=189.89 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=135.8
Q ss_pred HHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHH
Q 042477 18 TYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSF 97 (478)
Q Consensus 18 ~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 97 (478)
+++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++..+ ++.+.
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~ 95 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLGLALS------------NNIET 95 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHH------------ccHHH
Confidence 345678999999999999999999999999999999996 99999999999999999988887 67889
Q ss_pred HHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccc
Q 042477 98 LFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT 177 (478)
Q Consensus 98 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~ 177 (478)
+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..+|+.+++++.+.
T Consensus 96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 96 LLVLRFVQAFGASAGSVISQALVRDIYPGEE--------------------LSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHhcCcHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999777 99999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhh
Q 042477 178 FGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 178 ~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
.+|+..|.+.++..++..+..++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 156 LSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988877666555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=194.45 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=133.1
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
..++.+ .+++|.++.+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++...+ .
T Consensus 44 ~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------~ 109 (434)
T PRK11663 44 AAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFS------------S 109 (434)
T ss_pred HhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHH------------h
Confidence 344444 467999999999999999999999999999999996 99999999999999999988887 7
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
+.+.+++.|++.|++.|...+...+++.|++|+++ |++++++++...++|..+++.++++
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--------------------rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE--------------------RGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999989999999999999877 9999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHH
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~ 196 (478)
+.+.+|||+.|.+.++..++..+
T Consensus 170 l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 170 IALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHcccHHHHHHHHHHHHHHHHH
Confidence 98889999999987765554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=193.88 Aligned_cols=347 Identities=17% Similarity=0.135 Sum_probs=222.0
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhh-----HhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSS-----AAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMAL 77 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~-----~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~ 77 (478)
++..+++......++.|.+ ++|.+..+ .+++.+.+.+...++.++.|+++||+ |||+++..+.++..++.+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 24 FLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHHHHHHHHHH
Confidence 4556677777788888885 58888654 48888999999999999999999996 99999999999999998887
Q ss_pred hhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH
Q 042477 78 TSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY 157 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 157 (478)
... ++.+.+++.|++.|++.+ ..+...+++.|.+|+++ |+++.++.+
T Consensus 102 ~~~------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 148 (408)
T PRK09874 102 GLA------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK--------------------SGWALGTLS 148 (408)
T ss_pred HHH------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh--------------------hhHHHHHHH
Confidence 776 678899999999999865 45778888999998777 999999999
Q ss_pred HHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCC
Q 042477 158 FGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGK 237 (478)
Q Consensus 158 ~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (478)
...++|..++|.+++++.+..+|+..|.+.++..+++.+..++..++.+ ++.++ +...+....
T Consensus 149 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~------------ 211 (408)
T PRK09874 149 TGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSK---KEMLHMREV------------ 211 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccc---hhhhHHHHH------------
Confidence 9999999999999999988899999999888776666555444333211 11110 000000000
Q ss_pred CCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccc
Q 042477 238 AISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAM 317 (478)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (478)
++. .++.+....... ...............+..+....
T Consensus 212 ---------------------------------~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 249 (408)
T PRK09874 212 ---------------------------------VTS------LKNPKLVLSLFV---TTLIIQVATGSIAPILTLYVREL 249 (408)
T ss_pred ---------------------------------HHh------CcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001111110110 00111111111111111111111
Q ss_pred cccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042477 318 KRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQR 397 (478)
Q Consensus 318 ~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 397 (478)
...... .....+.+.....+..++..+.. +++.+ +.++++.+..+..+..++++.....
T Consensus 250 ~~~~~~-~~~~~g~~~~~~~l~~~~~~~~~--------g~l~d-----r~g~~~~~~~~~~~~~~~~~~~~~~------- 308 (408)
T PRK09874 250 AGNVSN-IAFISGMIASVPGVAALLSAPRL--------GKLGD-----RIGPEKILITALIFSVLLLIPMSFV------- 308 (408)
T ss_pred hccchH-HHHHHHHHHHHHHHHHHHHHHHH--------HHHHh-----ccccchhHHHHHHHHHHHHHHHHHh-------
Confidence 000000 00001111112222222333333 33333 3444455666666665555444332
Q ss_pred hccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 398 SKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 398 ~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.+.+.+.+..++.+++.+...|...+...+..|++.+|+.+++++....+|..+|+.+.+.+.+..+
T Consensus 309 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g 375 (408)
T PRK09874 309 --------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG 375 (408)
T ss_pred --------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 2345556667788999999999999999999999999999999999999999999999998865443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=189.99 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=137.4
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
+.+...+.++ .+++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+++..+
T Consensus 18 ~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~~~------- 88 (382)
T PRK10091 18 AEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFTLS------- 88 (382)
T ss_pred hHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3344444454 45678999999999999999999999999999999996 99999999999999999998888
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
++.+.+++.|++.|++.|...+...+++.|.+|+++ |++.++.+....++|..+|
T Consensus 89 -----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~g 143 (382)
T PRK10091 89 -----SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK--------------------VTAAVAGMVSGMTVANLLG 143 (382)
T ss_pred -----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH--------------------hhHHHHHHHHHHHHHHHHh
Confidence 789999999999999999888888889999988766 8899999999999999999
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042477 168 ITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 168 ~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~ 199 (478)
|.+++++.+..+||+.|.+.++..++..+..+
T Consensus 144 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 144 IPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred ccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998889999999998876555544333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=188.34 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=128.7
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..++...+...++.. .+++|.++.+.+++.+.+.+...++.+++|+++||+ ||||++..+.++.+++.+++...
T Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~~~~-- 88 (393)
T PRK11195 13 FFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLMLFG-- 88 (393)
T ss_pred HHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHHHHH--
Confidence 34444444444445444 578999999999999999999999999999999996 99999999999999988876655
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+. ++.|+++|++.+...|...+++.|.+|+++ |++++++.....++
T Consensus 89 ----------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~--------------------~~~a~~~~~~~~~~ 135 (393)
T PRK11195 89 ----------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK--------------------LVKANGWMEGSTIA 135 (393)
T ss_pred ----------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHH
Confidence 332 788999999999999999999999999877 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~ 196 (478)
|..+||.++|++.+. .|+..+.+.+.+.+++.+
T Consensus 136 ~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 136 AILLGTVLGGALADP-HAEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999874 477777766655444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=184.44 Aligned_cols=149 Identities=13% Similarity=0.030 Sum_probs=130.0
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..++...+.+.++.|.. ++|.|+.+.|++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+++..+
T Consensus 16 ~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~~~~~~~~~-- 91 (381)
T PRK03633 16 LLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAAGCAGLGLM-- 91 (381)
T ss_pred HHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4556667777788888885 7899999999999999999999999999999996 99999999999999999988887
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
++.+.++++|+++|++.+...|...+.+.|..++++ |++.+++++...++
T Consensus 92 ----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 141 (381)
T PRK03633 92 ----------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN--------------------RGRLLAAYMMVYYL 141 (381)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHHH
Confidence 778999999999999999988888888888887766 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHH
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFA 185 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~ 185 (478)
|..+||.+++.+.+...+...+.
T Consensus 142 g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 142 GTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred HHHHHHHHHhcccccccchHHHH
Confidence 99999999998876544444443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=195.69 Aligned_cols=155 Identities=11% Similarity=0.110 Sum_probs=133.0
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
...+.+++.+++|.+..+.+++.+++.++..++++++|+++||+ |||+++++++++..++.++..++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa------------ 252 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV------------ 252 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44456677788999999999999999999999999999999996 99999999999999999988887
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
++.+.++++|++.|+|.|+..|...++++|.+|++. |++.+++......+|.++++.++.
T Consensus 253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~--------------------Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK--------------------RGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999877 999999999999999999988765
Q ss_pred hhccc-------------cchhHHHHHHHHHHHHHHHHHHh
Q 042477 173 YIQDT-------------FGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 173 ~i~~~-------------~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.+... .+||+.|++.++..++++++.++
T Consensus 313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 36899888877766555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=193.48 Aligned_cols=156 Identities=9% Similarity=0.030 Sum_probs=129.2
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchH
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSS 96 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 96 (478)
...+.+++|.++.+.+++.+.+.++..++.+++|+++||+ |||+++..++++..++.++.+...... .++..
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 123 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGSG-------SVSLG 123 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhcc-------cchHH
Confidence 4567789999999999999999999999999999999996 999999988888777776665421100 06788
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc
Q 042477 97 FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD 176 (478)
Q Consensus 97 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~ 176 (478)
.+++.|+++|++.+...|...++++|++|+++ |+++++++....++|..+++.+..++..
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--------------------rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRK--------------------RGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccc--------------------eeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999888 9999999999999999999988876655
Q ss_pred cc---chhHHHHHHHHHHHHHHHHHHh
Q 042477 177 TF---GWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 177 ~~---g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.. +|+..|.+.++..++..++.++
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 43 5888888877665554444333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=188.70 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=123.8
Q ss_pred cCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHH
Q 042477 24 MKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLS 103 (478)
Q Consensus 24 l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (478)
++.++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.+++.++.++.+.....-.....+.......++++|+
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHH
Confidence 388999999999999999999999999999996 9999999999999998887765321000000000133567889999
Q ss_pred HHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc--------
Q 042477 104 LISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ-------- 175 (478)
Q Consensus 104 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~-------- 175 (478)
++|++.|+..|...++++|++|+++ |+++++.......+|.++++.++..+.
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~~--------------------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 188 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAHI--------------------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWL 188 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChhh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 9999999999999999999999887 999999999999999999877765432
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q 042477 176 DTFGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 176 ~~~g~~~~f~~~~~~~~~~~~~~ 198 (478)
+..|||+.|.+.++..++..+..
T Consensus 189 ~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 189 NTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred ccCChHHHHHHHHHHHHHHHHHH
Confidence 45799999998877666654443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=186.94 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=118.9
Q ss_pred hhhHHHHHHhhhhcCCChhh-Hhh-----HHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 11 GVASNLVTYLTDVMKMSNSS-AAK-----TVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 11 ~~~~~l~~yl~~~l~~~~~~-~~~-----~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
++..+...++.++++.+..+ .++ +.++..++..+++++.|+++||+ |||+++.++++++.++.++++++
T Consensus 33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~---- 107 (490)
T PRK10642 33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLI---- 107 (490)
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhc----
Confidence 34556667888887644322 122 24666688889999999999996 99999999999999999999988
Q ss_pred ccCCCCCccchH--------HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhH
Q 042477 85 AESPANTTSCSS--------FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWW 156 (478)
Q Consensus 85 ~~~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (478)
+++. .++++|+++|+|.|+..|...++++|++|+++ |+++.++.
T Consensus 108 --------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~--------------------Rg~~~~~~ 159 (490)
T PRK10642 108 --------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK--------------------RGFMGSWL 159 (490)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC--------------------CcHHHHHH
Confidence 4443 48899999999999999999999999999887 99999998
Q ss_pred HHHHhhhhhHHhhhhhhhc--------cccchhHHHHHHHHHHH
Q 042477 157 YFGVCSGSLLGITLMSYIQ--------DTFGWVIGFAIPTIAML 192 (478)
Q Consensus 157 ~~~~~~G~~ig~~~~~~i~--------~~~g~~~~f~~~~~~~~ 192 (478)
..+..+|..+|+.+...+. .++|||+.|++.++..+
T Consensus 160 ~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 160 DFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 8888888888876654332 25899999998765433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-20 Score=192.37 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=130.7
Q ss_pred hcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHH
Q 042477 23 VMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPL 102 (478)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (478)
+++++..+.|++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++...+.. .+...+++.|
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG----------GGIALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH----------cCchHHHHHH
Confidence 6889999999999999999999999999999996 9999999999999888877655421 4567899999
Q ss_pred HHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccc-cchh
Q 042477 103 SLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT-FGWV 181 (478)
Q Consensus 103 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~-~g~~ 181 (478)
+++|++.+...|....++.|++|+++ |++++++.+.+.++|..+++.+++++.+. .||+
T Consensus 139 ~~~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~ 198 (465)
T TIGR00894 139 VIQGLAQGSVSPATHKIIVKWAPPKE--------------------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWP 198 (465)
T ss_pred HHHHHhcccchhhHHHHHHhcCCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999887 99999999999999999999999999887 4999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042477 182 IGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 182 ~~f~~~~~~~~~~~~~~~~~ 201 (478)
..|++.++..++..++++..
T Consensus 199 ~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 199 MIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred eehhhhhHHHHHHHHHHHHH
Confidence 99999887666555544443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=182.11 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=138.2
Q ss_pred hhhhhhhHHHHHH--hhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 7 FAFKGVASNLVTY--LTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 7 ~~~~~~~~~l~~y--l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
+++++....+|.+ +++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++...+
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---- 91 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV---- 91 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh----
Confidence 4455555555554 6789999999999999999999999999999999996 99999999999999998888877
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.+.+.+++.|+++|+|.+...+...+++.|.+|+++ +++.++......++|.
T Consensus 92 --------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 143 (401)
T PRK11043 92 --------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK--------------------ANRVFATIMPLVALSP 143 (401)
T ss_pred --------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH--------------------HHHHHHHHHHHHHHHH
Confidence 678899999999999988888888899999998776 7888888888889999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.++|.+++++.+.+||+..|.+..+..++..++.++
T Consensus 144 ~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 144 ALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998899999998887766665544433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-19 Score=182.30 Aligned_cols=156 Identities=15% Similarity=0.250 Sum_probs=118.8
Q ss_pred hHHHHHHhhhhcC---CChhhHhh---HHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 13 ASNLVTYLTDVMK---MSNSSAAK---TVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 13 ~~~l~~yl~~~l~---~~~~~~~~---~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
.+++..++.++++ .+..+.+. +.+...++..++++++|+++||+ |||+++..+++++.++.++.+++......
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIACLPGYETI 119 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhhcCCchhH
Confidence 5566678888874 45554433 34444455558999999999996 99999999999999999998877210000
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
. ..+...+++.|+++|+|.|+..|...++++|++|+++ |+++.++.+...+.|.++
T Consensus 120 ---~-~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~--------------------rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 120 ---G-TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR--------------------KGFYASFQYVTLIGGQLL 175 (432)
T ss_pred ---H-HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc--------------------ccHHHHHHHHHHHHHHHH
Confidence 0 0123468899999999999999999999999999877 999999998888999888
Q ss_pred Hhhhhhhhc--------cccchhHHHHHHHHHHHH
Q 042477 167 GITLMSYIQ--------DTFGWVIGFAIPTIAMLT 193 (478)
Q Consensus 167 g~~~~~~i~--------~~~g~~~~f~~~~~~~~~ 193 (478)
++.+...+. ..+|||.+|++.++..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 877655443 257999999987765444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=181.48 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=112.8
Q ss_pred HHHHhhhhc--CCChhhHhhHH-----HhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCC
Q 042477 16 LVTYLTDVM--KMSNSSAAKTV-----SSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESP 88 (478)
Q Consensus 16 l~~yl~~~l--~~~~~~~~~~~-----~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~ 88 (478)
.+.++.+++ +.++. .+++. +...++..+++++.|+++||+ |||+++..+.+++.++.++++++
T Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~-------- 114 (438)
T PRK09952 45 AALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLL-------- 114 (438)
T ss_pred HHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcC--------
Confidence 344555554 56665 34443 233345667778889999996 99999999999999999999888
Q ss_pred CCCccchH--------HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 89 ANTTSCSS--------FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 89 ~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
++.. .+++.|+++|++.|+..|...+++.|++|+++ |++..+....+.
T Consensus 115 ----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~--------------------rg~~~~~~~~g~ 170 (438)
T PRK09952 115 ----PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK--------------------KAFYSSGVQVGY 170 (438)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC--------------------CcHHHHHHHHHH
Confidence 4433 58899999999999999999999999999877 999999988888
Q ss_pred hhhhhHHhhhhhhhc--------cccchhHHHHHHHHHHH
Q 042477 161 CSGSLLGITLMSYIQ--------DTFGWVIGFAIPTIAML 192 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~--------~~~g~~~~f~~~~~~~~ 192 (478)
.+|..++..+...+. ..+|||.+|++.++..+
T Consensus 171 ~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 171 GVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 899888877665543 25799999998776543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-19 Score=178.91 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=129.3
Q ss_pred HHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHH
Q 042477 18 TYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSF 97 (478)
Q Consensus 18 ~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 97 (478)
.++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++...+ .+...
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~------------~~~~~ 98 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFILGTLVALFA------------HSLTV 98 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHH------------ccHHH
Confidence 445578999999999999999999999999999999996 99999999999999999888777 67889
Q ss_pred HHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccc
Q 042477 98 LFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT 177 (478)
Q Consensus 98 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~ 177 (478)
+++.|++.|++.+...+....+..|.+++++ ++++.++...+..+|..++|.+++++.+.
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQ--------------------LRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999888888888888888766 88999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 042477 178 FGWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 178 ~g~~~~f~~~~~~~~~~~~~ 197 (478)
.||+..|.+.++...+..++
T Consensus 159 ~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 159 FGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred cChHHHHHHHHHHHHHHHHH
Confidence 89999999877655544333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=179.28 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=139.5
Q ss_pred hhhhhhhhhhHHHHH--------HhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhH
Q 042477 4 KERFAFKGVASNLVT--------YLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLM 75 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~--------yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~ 75 (478)
+..+.+|+....++. .+.+++|.+..+.++.++.+.++..++.++.|+++||+ |||+++..+.++..++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~ 96 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACA 96 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHH
Confidence 334455555554443 25567999999999999999999999999999999996 999999999999999999
Q ss_pred HhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh
Q 042477 76 ALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW 155 (478)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 155 (478)
++..+ ++.+.++++|+++|++.+...+...+++.|.+|+++ |++.+++
T Consensus 97 ~~~~a------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 144 (413)
T PRK15403 97 ATLFT------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK--------------------GIKLMAI 144 (413)
T ss_pred HHHHc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--------------------HHHHHHH
Confidence 98888 788999999999999998766777788899998877 8899999
Q ss_pred HHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 156 WYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 156 ~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.....++|..+||.+++++.++.||++.|++.++..+++.+..++
T Consensus 145 ~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 145 ITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988889999999888766666554333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=187.48 Aligned_cols=147 Identities=10% Similarity=0.102 Sum_probs=129.9
Q ss_pred HHhhhhcCCC---hhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 18 TYLTDVMKMS---NSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 18 ~yl~~~l~~~---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
..+.+++|++ +.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++..++ .+
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~------------~~ 179 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS------------PN 179 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc------------cc
Confidence 3466789998 89999999999999999999999999996 99999999999999999988887 78
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
++.+++.|++.|++.+...+...+++.|.+|+++ |++..++......+|.++++.++..+
T Consensus 180 ~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ--------------------RAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhheecChhh--------------------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887 99999999899999999998887666
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 175 QDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 175 ~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.+ ||+.|++.++..++..+..++
T Consensus 240 ~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 240 PD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHh
Confidence 43 999999888766665554433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=188.96 Aligned_cols=353 Identities=14% Similarity=0.069 Sum_probs=214.4
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchH
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSS 96 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 96 (478)
...+++++|.++++.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+++..+ ++.+
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~------------~~~~ 108 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS------------SNVI 108 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh------------hhHH
Confidence 3455689999999999999999999999999999999996 99999999999999999888877 5666
Q ss_pred HHHH-HHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc
Q 042477 97 FLFL-PLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ 175 (478)
Q Consensus 97 ~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~ 175 (478)
.+++ .|++.|++.+...+...+++.+.++ ++ |+++.++.+.+.++|..++|.+++++.
T Consensus 109 ~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~--------------------r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 109 ELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR--------------------RPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh--------------------HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6654 5688899998766667788889885 45 999999999999999999999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCcccccccccc
Q 042477 176 DTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEK 255 (478)
Q Consensus 176 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (478)
+.+|||++|++.+++.+++.++.++.++..+.++...++ .. ...+ ++. . .++
T Consensus 168 ~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~----------------~~~~----~~~--~----~~~ 219 (455)
T TIGR00892 168 ESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSK--SK----------------EGLP----PDG--S----TKK 219 (455)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc--cc----------------ccCC----CCC--c----ccc
Confidence 889999999998887666555444443321110000000 00 0000 000 0 000
Q ss_pred ccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcch
Q 042477 256 PLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSA 335 (478)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 335 (478)
..... ... +...+.+. + +...+.++..+ .........+......+..+.. +. +. -....+.+...
T Consensus 220 ~~~~~-~~~--~~~~~~~~---~-~~~~~~~~~~~---~~~~l~~~~~~~~~~~l~~~~~--~~--g~-s~~~~g~~~~~ 284 (455)
T TIGR00892 220 LSKKS-TAE--KINRFLDF---S-LFTHRGFLVYL---SGNVIMFLGFFAPIIFLVPYAK--DK--GV-DEYEAAFLLSI 284 (455)
T ss_pred ccccc-hhh--hhhhhcch---H-HhcCchHHHHH---HHHHHHHHHccchHHHHHHHHH--Hc--CC-CHHHHHHHHHH
Confidence 00000 000 00000000 0 11111121111 1111111222111112221111 11 11 01122333344
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHH
Q 042477 336 ITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRM--RIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLP 413 (478)
Q Consensus 336 ~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 413 (478)
..+..++..++...+. +|. +.++.++. ..+.++.++++++... ..+.+++++
T Consensus 285 ~~~~~~~~~~~~g~l~----d~~-------~~~~~~~~~~~~~~~~~~l~~ll~~~---------------~~~~~~~~i 338 (455)
T TIGR00892 285 IGFVDIFARPSCGLIA----GLK-------WIRPHVQYLFSFALLFNGLTHLLCAL---------------AGDYTGLVI 338 (455)
T ss_pred HHHHHHHHHHHHHHHh----ccc-------ccCHHHHHHHHHHHHHHHHHHHHHHH---------------hchHHHHHH
Confidence 4444444444444332 111 12222222 3333333343333322 124566666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 414 EYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 414 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
..++.|++.+...+...+.+.+.+|++.+|+++|+++...++|+++|+.+.+.+.+..+
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence 77888999888888999999999999999999999999999999999999998776544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-19 Score=181.54 Aligned_cols=358 Identities=16% Similarity=0.176 Sum_probs=219.5
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc---cchhH-HHHHHHHHHHHhhHHh
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY---WDRHS-TILAFSFIYVLGLMAL 77 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Gr~~-~i~~~~~~~~ig~~l~ 77 (478)
++..++.+..+..+++.|+++++|.++.++|.+.++..+...+..|+.|+++||. +|||| .++.+....+++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 3455677777888999999999999999999999999999999999999999983 48855 5667878888887777
Q ss_pred hhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH
Q 042477 78 TSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY 157 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 157 (478)
..... . +.......+++.+++.+++.+...+...++..|..++++ +|+++.++..
T Consensus 88 ~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-------------------~R~~~~~~~~ 142 (437)
T TIGR00792 88 FTTPD---F---SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-------------------ERESLSTFRR 142 (437)
T ss_pred HhCCC---C---CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-------------------HHHHHHHHHH
Confidence 65421 0 000234566777888899989888888899999875432 1899999988
Q ss_pred HHHhhhhhHHhhhhhhhc-------cccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHH
Q 042477 158 FGVCSGSLLGITLMSYIQ-------DTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAA 230 (478)
Q Consensus 158 ~~~~~G~~ig~~~~~~i~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (478)
...++|..+++.+.+.+. +..+|+..+.+.+++.++..++.++..++.+++.+++++++.+..+
T Consensus 143 ~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--------- 213 (437)
T TIGR00792 143 FGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQ--------- 213 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHH---------
Confidence 888898887766654433 2468999988887766665554443332211000000000000000
Q ss_pred HhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Q 042477 231 SKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFF 310 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (478)
.+ ++ +.+.|.+...+... ...+..+.......
T Consensus 214 ---------------------------------------~~-----~~-l~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 245 (437)
T TIGR00792 214 ---------------------------------------IF-----KA-LFKNDQLLILCLAY---LFYNLAFNIKNGVQ 245 (437)
T ss_pred ---------------------------------------HH-----HH-HhCCHHHHHHHHHH---HHHHHHHHHHcchh
Confidence 00 00 11112222211111 11111111111111
Q ss_pred hhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 042477 311 TKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAV 390 (478)
Q Consensus 311 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 390 (478)
..+ .....+. ....+.+.....+..++..++..++ .+ +.++++.+..|.++++++++...+.
T Consensus 246 ~~~---~~~~~~~--~~~~~~~~~~~~i~~ii~~~~~~~l----~~---------r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 246 VYY---FTYVLGD--PELFSYMGSIAIVAGLIGVLLFPRL----VK---------KFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred hee---EeeecCC--hHHHHHHHHHHHHHHHHHHHHHHHH----HH---------HhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 111 1111110 1111222223333334444443332 23 3344556777777777776655442
Q ss_pred HHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC-------chhHHHHHHHHHHHHhHHHHHHHHH
Q 042477 391 ETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVP-------VRMRTMGFALYTSVFGVGSFLSALL 463 (478)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~lg~~i 463 (478)
+.+.+.+++..++.+++.+...+..+++..|.+| ++.+|.++|++++...+|..+++.+
T Consensus 308 --------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 308 --------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1234455566778888988888888888888765 5678999999999999999999999
Q ss_pred HHHhhhcccc
Q 042477 464 ISVIEFFTSS 473 (478)
Q Consensus 464 ~~~~~~~~~~ 473 (478)
.+.+.+..|-
T Consensus 374 ~g~ll~~~G~ 383 (437)
T TIGR00792 374 VGLILGIIGY 383 (437)
T ss_pred HHHHHHHcCC
Confidence 9988776663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-19 Score=179.87 Aligned_cols=169 Identities=13% Similarity=0.108 Sum_probs=121.9
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhh-hhhhhhHHhhhccchhHHHH-HHHHHHHHhhHHhhh
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSM-LPLLLAPLADSYWDRHSTIL-AFSFIYVLGLMALTS 79 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i-~~~~~G~laD~~~Gr~~~i~-~~~~~~~ig~~l~~~ 79 (478)
.++.+++.....+.++.|+++++|.++++.|++.+...+...+ .++++|+ +||+ ||||.++ .+.++..++..+...
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~~~~~~~ 101 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLACTLFAW 101 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHHHHHHHH
Confidence 3566777788889999999999999999999998777665554 4555555 9996 9998754 555555566666666
Q ss_pred cccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHH
Q 042477 80 TAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFG 159 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (478)
+ .+.+.+++.+.+.+...+...|...++..|..++++. ..+...++....
T Consensus 102 ~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 151 (393)
T PRK15011 102 N------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR------------------EAVMFSSFLRAQ 151 (393)
T ss_pred h------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc------------------hHHHHHHHHHHH
Confidence 6 5566655444444433346678888888887654430 023455788889
Q ss_pred HhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 160 VCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 160 ~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.++|..+||.+++++.+++|||..|++.++..++..+..++..
T Consensus 152 ~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 194 (393)
T PRK15011 152 VSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFL 194 (393)
T ss_pred HHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999889999999988876665554444433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-19 Score=176.98 Aligned_cols=333 Identities=11% Similarity=0.079 Sum_probs=208.5
Q ss_pred hhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCC
Q 042477 9 FKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESP 88 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~ 88 (478)
++.....+...+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+.. .+
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-------- 84 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-------- 84 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh--------
Confidence 334334455567789999999999999999999999999999999996 99999999999888887766 44
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh
Q 042477 89 ANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 168 (478)
.+.+.+++.|++.|+|.+...+..+.++.|.+| ++ |++++++++...++|..+++
T Consensus 85 ----~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~~~~~~g~~i~~ 139 (355)
T TIGR00896 85 ----PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR--------------------VGLMTGLYSMALMGGAALAA 139 (355)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch--------------------hhHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999888888888888876 34 89999999999999999999
Q ss_pred hhhhhhcccc--chhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCc
Q 042477 169 TLMSYIQDTF--GWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSD 246 (478)
Q Consensus 169 ~~~~~i~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (478)
.+++.+.+.. +||..|.+.++..++..... .++.+++++++ ++
T Consensus 140 ~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~----~~---------------------------- 184 (355)
T TIGR00896 140 AATVPLAQHSGGHWQQALAWWALPALLALLAW---IPQVRRRVAAN----QT---------------------------- 184 (355)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---hhhhccccCCC----CC----------------------------
Confidence 9988887654 39988876655433332211 11111110000 00
Q ss_pred cccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhhhccccccCCCcc
Q 042477 247 AMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRF 325 (478)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 325 (478)
.. ...+++. .++ +..+..... ......++... .....+.. +. + +
T Consensus 185 -~~------------------~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~----~~lp~~~~--~~--g--~ 229 (355)
T TIGR00896 185 -TT------------------RLTPVRI-----WRS-PLAWQVTVFFGLQSGLYYSLI----GWLPAILI--SH--G--A 229 (355)
T ss_pred -CC------------------CCCCchh-----hcC-HhHHHHHHHHHHHHHHHHHHH----HHHHHHHH--Hc--C--C
Confidence 00 0000000 111 112211111 11111122211 11111111 11 1 1
Q ss_pred c-cCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 042477 326 K-IPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAK 404 (478)
Q Consensus 326 ~-~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (478)
+ ...+.......+..++..++.+++ .+|.. .+++.+.++..+.+++.....+..
T Consensus 230 ~~~~~g~~~~~~~~~~i~~~~~~g~l----~dr~~--------~~~~~~~~~~~~~~~~~~~~~~~~------------- 284 (355)
T TIGR00896 230 SAATAGSLLALMQLAQAASALLIPAL----ARRVK--------DQRGIVAVLAVLQLVGLCGLLFAP------------- 284 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHH----Hhhhc--------cchHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 1 122333334444444444444333 33321 123345566666666665554431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC-chhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccC
Q 042477 405 PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVP-VRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSR 474 (478)
Q Consensus 405 ~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~~ 474 (478)
....++ ..++.|++.+...|...+.+.+..+ ++.++..+++.+....+++.+++.+.+.+.+..++.
T Consensus 285 -~~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 285 -MHGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred -hhHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111111 3467799998888887777665554 677899999999999999999999999998888764
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=193.06 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=142.8
Q ss_pred HHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHH
Q 042477 18 TYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSF 97 (478)
Q Consensus 18 ~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 97 (478)
.-+++.+|.+++..|++.+.+.+...+++|+.|+++||| .||+++.+|.+++.++.+..+++ ..++.
T Consensus 57 ~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~~~~fs------------~~Fwq 123 (493)
T KOG1330|consen 57 KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVFASGFS------------NHFWQ 123 (493)
T ss_pred HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHHHHHHH------------HHHHH
Confidence 456678999999999999999999999999999999998 99999999999999999999999 78999
Q ss_pred HHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccc
Q 042477 98 LFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT 177 (478)
Q Consensus 98 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~ 177 (478)
+.+.|.+.|+|.+.+.|..+++++|.+|.++ |++.++++|+.+++|+.+|..++.++.+.
T Consensus 124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~--------------------Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDK--------------------RSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHhccchhhhcccchhHhhhcCcchh--------------------hhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 9999999999999999999999999999888 99999999999999999999999999887
Q ss_pred cc-hhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 178 FG-WVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 178 ~g-~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
.+ ||++|...+++.+++.++.++..+
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 66 999999999988888777766654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=176.89 Aligned_cols=335 Identities=12% Similarity=0.021 Sum_probs=211.5
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHH----HHHHHHHHHhhHHhhhccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTI----LAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i----~~~~~~~~ig~~l~~~~~~ 82 (478)
+++....++++.|+ +++|.+..+.+++.+.+.+...+++++.|.++||+ ||++.. ..+..+..+ .....+
T Consensus 18 ~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~--~~~~~~-- 91 (382)
T TIGR00902 18 CAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA--AFSAGA-- 91 (382)
T ss_pred HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH--HHHHhh--
Confidence 34444556788888 47899999999999999999999999999999996 985433 222222222 122233
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
++.+.+++.|++++.+.+...|...++..|. .++ |++.++......++
T Consensus 92 ----------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~--------------------~~~~~g~~~~~~sl 139 (382)
T TIGR00902 92 ----------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ--------------------FGLDYGKVRLIGSA 139 (382)
T ss_pred ----------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH--------------------cCCCccHHHHHHHH
Confidence 6788999999999999888888888876553 233 78889999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
|..+||.+++++.+++||+..|.+..++..+.. +.+...++. +|++++ +.
T Consensus 140 G~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~--~~------------------------ 189 (382)
T TIGR00902 140 AFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAI--PE------------------------ 189 (382)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCccc--cc------------------------
Confidence 999999999999999999999987665433222 222222111 111100 00
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
+ + ...+++ ..+ +...|+++..... ..+......++.+....+.. + .|
T Consensus 190 --~--~-------------------~~~~~~--~~~-~l~~~~~~~~l~~---~~l~~~~~~~~~~~~~~~l~--~--~g 236 (382)
T TIGR00902 190 --D--E-------------------SQGDSA--FIA-LLKNPMNLRFLAA---VCLIQGAHAAYYGFSAIYWQ--A--AG 236 (382)
T ss_pred --c--c-------------------cccchh--HHH-HHcChHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H--CC
Confidence 0 0 000000 001 1122333222211 11112222222222222111 1 12
Q ss_pred CccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 042477 323 SRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
. -....+.......+..++.. .+.+|+.+ +.++++.+.+|.++.++.++...+.
T Consensus 237 ~-s~~~~g~l~~~~~~~~i~~~--------~~~~~l~~-----r~g~~~~l~~~~~~~~~~~~~~~~~------------ 290 (382)
T TIGR00902 237 I-SASATGLLWGIGVLAEIIIF--------AFSNKLFQ-----NCSARDLLLISAIACVGRWAIIGAI------------ 290 (382)
T ss_pred C-CHhHHHHHHHHHHHHHHHHH--------HHhHHHHh-----hCCHHHHHHHHHHHHHHHHHHHHhH------------
Confidence 1 01112222222333333332 23334433 5667777888999988888776654
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHH-HHHhHHHHHHHHHHHHhhhccc
Q 042477 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYT-SVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 403 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.+++.+++.-++.++..++..+....++.+. |++.|++++++++ ...++|..+++.+.|.+.+..+
T Consensus 291 ---~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 291 ---EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556667677999999999999999999988 9999999999986 5678999999999999887654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=178.49 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=128.2
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..++.+....+++.|+ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.+++.....
T Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~~ 100 (402)
T TIGR00897 23 VVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWCVGHAAFIVFGL 100 (402)
T ss_pred HHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666677888888 57899999999999999999999999999999996 9999999999999988766532211
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
. ..+...+++.|++.|+|.+...+...+.+.+.+|+++ |++++++.+...++
T Consensus 101 ~--------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~ 152 (402)
T TIGR00897 101 G--------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN--------------------LSSAVGWFWAVYSI 152 (402)
T ss_pred c--------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHHH
Confidence 0 0457778889999999998887888888899988877 99999999999999
Q ss_pred hh-hHHhhhhhhhccccchhHHHHHHHH
Q 042477 163 GS-LLGITLMSYIQDTFGWVIGFAIPTI 189 (478)
Q Consensus 163 G~-~ig~~~~~~i~~~~g~~~~f~~~~~ 189 (478)
|. .+||.+++++.+.+||+..++....
T Consensus 153 g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 153 GIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 96 5799998888888897665554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-19 Score=178.43 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=140.8
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
++.....+.++.+. +++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++..+
T Consensus 5 ~~~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~------ 76 (377)
T PRK11102 5 LAIDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA------ 76 (377)
T ss_pred hHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH------
Confidence 44455556677766 57999999999999999999999999999999996 99999999999999999998887
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
.+.+.+++.|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..+
T Consensus 77 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~ 130 (377)
T PRK11102 77 ------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE--------------------FSRMMSFVTLVMTIAPLL 130 (377)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--------------------HHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999877 999999999999999999
Q ss_pred HhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 167 GITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 167 g~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+|.+++++.+..+|++.|.+.++..++..++..+
T Consensus 131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 131 APIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988889999998877766665444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=181.73 Aligned_cols=143 Identities=17% Similarity=0.242 Sum_probs=124.2
Q ss_pred hhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHH
Q 042477 28 NSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISL 107 (478)
Q Consensus 28 ~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 107 (478)
..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++...... .+.+.++++|+++|+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~ 139 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA---------LSVEMLIVGRVLLGI 139 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc---------cchHHHHHHHHHHHh
Confidence 88999999999999999999999999996 99999999999999999888665321 345689999999999
Q ss_pred hccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh---hhhccccchhHHH
Q 042477 108 GLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM---SYIQDTFGWVIGF 184 (478)
Q Consensus 108 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~---~~i~~~~g~~~~f 184 (478)
|.+...+...++++|.+|+++ |++++++++...++|.++++.++ +...+..+||+.|
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 140 GVGIASALVPMYLSEIAPKAL--------------------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred hhhHHHhHHHHHHHccCChhh--------------------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 999999999999999999887 99999999999999999999998 6666778999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 042477 185 AIPTIAMLTSTAFFSF 200 (478)
Q Consensus 185 ~~~~~~~~~~~~~~~~ 200 (478)
.+.++..++..+..++
T Consensus 200 ~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9966655554444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=182.75 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=129.1
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
-..++...+.++.|+++++|+++.+.+++.+.+.++..+++++.|+++||+ |||+.+.++.++..++.+++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~~~----- 87 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAGLA----- 87 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----
Confidence 345565666677689999999999999999999999999999999999996 99999999999999999998887
Q ss_pred cCCCCCcc-chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 86 ESPANTTS-CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
. +.+.++++|+++|++.+.. +...++++|.+|+++ |++..+++....++|.
T Consensus 88 -------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~ 139 (366)
T TIGR00886 88 -------VQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI--------------------QGTALGLAAGWGNMGG 139 (366)
T ss_pred -------hhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh--------------------hhHHHHHHHHHhHHHH
Confidence 5 7889999999999996654 567889999999877 9999999988888888
Q ss_pred hHHhhhhhhhcc----------ccchhHHH-HHHHHHHHHH
Q 042477 165 LLGITLMSYIQD----------TFGWVIGF-AIPTIAMLTS 194 (478)
Q Consensus 165 ~ig~~~~~~i~~----------~~g~~~~f-~~~~~~~~~~ 194 (478)
.+++.+++.+.. +.+|++.| +..++...+.
T Consensus 140 ~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 180 (366)
T TIGR00886 140 GVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLP 180 (366)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence 888887766543 34899998 4434443333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=187.10 Aligned_cols=349 Identities=13% Similarity=0.058 Sum_probs=223.4
Q ss_pred hhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHH
Q 042477 21 TDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFL 100 (478)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (478)
..++++++.+.+++.+.+..+..++.+++|+++||+ |-|+++..+.++.++++++.++++. .+.+.+++
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~ 133 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS----------IGFYLLLV 133 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHH
Confidence 346889999999999999999999999999999997 9999999999999999999999965 55568899
Q ss_pred HHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccc-cc
Q 042477 101 PLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDT-FG 179 (478)
Q Consensus 101 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~-~g 179 (478)
.|+++|++.|...|++..+.+++.|++| |+++.+..+.+..+|.+++..++|++-+. +|
T Consensus 134 ~R~lqGl~~g~~~pa~~~i~~~W~P~~E--------------------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 134 LRFLQGLGQGVLFPAIGSILAKWAPPNE--------------------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred HHHHhHHHHhHHHhhhhceeeeECCHHH--------------------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 9999999999999999999999999988 99999999999999999999999999887 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCcccccccccccccc
Q 042477 180 WVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKPLCC 259 (478)
Q Consensus 180 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
|+++|++.++..++..+++++....-+.++|.- +. +|.+++++.+..
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i----s~-----------------------------~El~~I~~~k~~ 240 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI----SE-----------------------------KELKYIEKGKSE 240 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC----CH-----------------------------HHHHHHHhcccc
Confidence 999999999887777666655543222222211 00 222233322211
Q ss_pred CCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHH
Q 042477 260 NDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITV 338 (478)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 338 (478)
+..... ....|++. -..+.++....- +...-.++....+.++ +..+..+++. ...+.+.++..+
T Consensus 241 ~~~~~~-~~vP~~~i------~ts~~vwai~~~~f~~~~~~~~l~~y~Pt-Y~~~VL~f~v-------~~~G~~salP~l 305 (466)
T KOG2532|consen 241 AHVKKK-PPVPYKAI------LTSPPVWAIWISAFGGNWGFYLLLTYLPT-YLKEVLGFDV-------RETGFLSALPFL 305 (466)
T ss_pred cccCCC-CCCCHHHH------HcCHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhCCCh-------hhhhHHHHHHHH
Confidence 111100 11123221 111111111111 1111112222222222 2222222221 245677777777
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHH
Q 042477 339 SIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRM--RIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYV 416 (478)
Q Consensus 339 ~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 416 (478)
...+...+.+.+.|.+.+| .. .....+|+ .+++...++.++..++.. ..+. ++.+..+
T Consensus 306 ~~~~~k~~~g~lsD~l~~~-~l-----s~t~~rkifn~i~~~~~ai~l~~l~~~~-------------~~~~-~~a~~~l 365 (466)
T KOG2532|consen 306 AMAIVKFVAGQLSDRLTFR-IL-----SETTVRKIFNTIAFGGPAVFLLVLAFTS-------------DEHR-LLAVILL 365 (466)
T ss_pred HHHHHHHHHHHHHHHHhhc-cC-----chHhHHHHHHhHHHHHHHHHHHeeeecC-------------CCcc-hHHHHHH
Confidence 7777777777666655443 22 33344554 334444444444444331 1111 2222223
Q ss_pred HHHHHHHHHHhHHHHHHHhh-cCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 417 LLGISDIFTVVAMQEFFYNE-VPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 417 l~g~g~~~~~~~~~~~~~~~-~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
.++.+..........-.... +|+ .-+..+|+.+....++++++|.+.+.+..
T Consensus 366 ~~~~~~~g~~~~Gf~~~~~~~apq-~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 366 TIAIGLSGFNISGFYKNHQDIAPQ-HAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHcccchhhhHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 33333333333333333334 554 59999999999999999999999998875
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=175.90 Aligned_cols=148 Identities=8% Similarity=0.038 Sum_probs=129.2
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchH
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSS 96 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 96 (478)
...+.+++|+++++.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.+++..+ ++.+
T Consensus 30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~l~~~~------------~~~~ 96 (394)
T PRK03699 30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMILAVAGLMFS------------HSLA 96 (394)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc------------chHH
Confidence 3446678999999999999999999999999999999996 99999999999999999988887 6788
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc-
Q 042477 97 FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ- 175 (478)
Q Consensus 97 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~- 175 (478)
.+++.|+++|++.|...+...+++.|.+|+++ |++.++..+...++|+.++|.+.+++.
T Consensus 97 ~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 97 LFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ--------------------RGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred HHHHHHHHHHHhhHhhccchhHHhhhhcccch--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988999999999998766 899999888888999999999888764
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 042477 176 DTFGWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 176 ~~~g~~~~f~~~~~~~~~~~~~ 197 (478)
+..|||+.|.+.++..++..++
T Consensus 157 ~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 157 RSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 4579999998877655554433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-19 Score=187.14 Aligned_cols=143 Identities=18% Similarity=0.248 Sum_probs=130.8
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.+..++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++ .+
T Consensus 41 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------~~ 107 (496)
T PRK03893 41 LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACGFA------------PG 107 (496)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------hH
Confidence 344567789999999999999999999999999999999996 99999999999999999998887 77
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
.+.+++.|++.|++.+...+...+++.|.+|+++ |++.++..+...++|..+++.+.+++
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~~~~~l 167 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL--------------------RNKASGFLISGFSIGAVVAAQVYSLV 167 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999877 99999999999999999999999999
Q ss_pred ccccchhHHHHHHHHH
Q 042477 175 QDTFGWVIGFAIPTIA 190 (478)
Q Consensus 175 ~~~~g~~~~f~~~~~~ 190 (478)
.++++|++.|.+.++.
T Consensus 168 ~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 168 VPVWGWRALFFIGILP 183 (496)
T ss_pred hccCCHHHHHHHHHHH
Confidence 8999999999875443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=180.35 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=125.7
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
....|++++ |.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+++.+.... ..+
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~--------~~~ 119 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA--------TSS 119 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc--------ccc
Confidence 344577777 99999999999999999999999999999996 99999999999999998888765210 035
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh-HHhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL-LGITLMSY 173 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-ig~~~~~~ 173 (478)
...+++.|++.|++.|...|.....+.|++|+++ |++++++++...++|.. .+|+.+..
T Consensus 120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~~~~l~~~~ 179 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE--------------------RGGIVSVWNCAHNVGGGLPPLLFLLG 179 (452)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH--------------------HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6788899999999999988888889999999877 99999999999999874 45554433
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+....+|++.|++.++..++..++..+
T Consensus 180 ~~~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 180 MAWFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 333459999999887665554444333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=174.48 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=115.3
Q ss_pred HHHHHhhhhcC--CChhhHhhHHHhh-----HHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 15 NLVTYLTDVMK--MSNSSAAKTVSSW-----NGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 15 ~l~~yl~~~l~--~~~~~~~~~~~~~-----~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
....++.++.. .++.+.+...+.. .+...+++++.|+++||+ |||+++..+.++..++.+++..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 45566655543 3455555444332 233346789999999996 9999999999999999998887721000
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
.. ......++++|+++|+|.+...+...+++.|.+|+++ |++..++.+....+|..++
T Consensus 91 -~~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~G~~i~ 148 (394)
T TIGR00883 91 -IG-IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK--------------------RGFYGSFQQVGAPVGLLLA 148 (394)
T ss_pred -hH-HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc--------------------chHHHHHHHHHHHHHHHHH
Confidence 00 0002358899999999999999999999999999877 9999999999999999999
Q ss_pred hhhhhhhc--------cccchhHHHHHHHHHHHHHH
Q 042477 168 ITLMSYIQ--------DTFGWVIGFAIPTIAMLTST 195 (478)
Q Consensus 168 ~~~~~~i~--------~~~g~~~~f~~~~~~~~~~~ 195 (478)
+.+++.+. +..+|++.|.+.++..+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 149 ALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 88776543 35789999988776555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=178.94 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=115.3
Q ss_pred hHHHHHHhhhhcCCChhhHhhH-HHhhHHH-----HhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKT-VSSWNGL-----TSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~-~~~~~~~-----~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
.....+++.++++.++.+.+.. .+...+. ..+++++.|+++||+ ||||.++.+.++..++.+++.++
T Consensus 34 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~------ 106 (434)
T PRK15075 34 FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFV------ 106 (434)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhC------
Confidence 3456667888999888776543 3332222 235788999999996 99999999999999999999888
Q ss_pred CCCCCccchH--------HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 87 SPANTTSCSS--------FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 87 ~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
++.. .++++|+++|++.|...|+..++++|++|+++ |++.+++...
T Consensus 107 ------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~--------------------rg~~~~~~~~ 160 (434)
T PRK15075 107 ------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR--------------------KGFYTSWQSA 160 (434)
T ss_pred ------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc--------------------chHHHHHHHH
Confidence 3433 57899999999999999999999999999887 9999999888
Q ss_pred HHhhhhhHHhhhhhhh--------ccccchhHHHHHHHH
Q 042477 159 GVCSGSLLGITLMSYI--------QDTFGWVIGFAIPTI 189 (478)
Q Consensus 159 ~~~~G~~ig~~~~~~i--------~~~~g~~~~f~~~~~ 189 (478)
..++|..+|+.+++.+ .+.+|||+.|++..+
T Consensus 161 ~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 161 SQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 8888888877777655 246899999987543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-18 Score=173.35 Aligned_cols=335 Identities=12% Similarity=0.041 Sum_probs=203.8
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchh----HHHHHHHHHHHHhhHHhhhccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH----STILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~----~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
+++..+.++++.|++ ++|.|..+.|++++.+.+...+++++.|+++||+ ||+ +.+.++..+.. ......+
T Consensus 18 ~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--~~~~~~~-- 91 (382)
T PRK11128 18 FAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--VAFWFGA-- 91 (382)
T ss_pred HHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--HHHHHhc--
Confidence 344555667888994 6899999999999999999999999999999996 984 33332222221 1111222
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
++.+.+++.|++.|++.+...|...++..|.. ++ |++.++......++
T Consensus 92 ----------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~--------------------~~~a~~~~~~~~~l 139 (382)
T PRK11128 92 ----------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ--------------------IGLDYGKVRLWGSI 139 (382)
T ss_pred ----------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh--------------------ccCCcchHHHHHHH
Confidence 56888889999999999999998888877762 23 67778888888899
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
|..+||.+++++.+++||+..|++.++..++..+... ..+ +.+|+++++ ++
T Consensus 140 g~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~---~~~~~~~~~-~~------------------------ 190 (382)
T PRK11128 140 AFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRP---TIMPQGESR-QQ------------------------ 190 (382)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccC---CCCCccccc-cc------------------------
Confidence 9999999999999999999999877765444433322 221 111211000 00
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
. + +..+ ...+ +.+.|.++..... ..+....+....+....+. ++ .|
T Consensus 191 --~--~--------------------~~~~--~~~~-i~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~---~~-~g 236 (382)
T PRK11128 191 --E--S--------------------AGWP--AWKA-LLKEPTVWRFLLC---VSLLQGSHAAYYGFSAIYW---QA-AG 236 (382)
T ss_pred --c--c--------------------cccc--hHHH-HHcChhHHHHHHH---HHHHHHHhHhHHHHHHHHH---HH-CC
Confidence 0 0 0000 0011 2222223222211 1111111111111111111 11 11
Q ss_pred CccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 042477 323 SRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
. -....+.+.....+..++...+.+ |..+ +.+.++.+..+.++.+++++.....
T Consensus 237 ~-s~~~~g~~~~~~~~~~~~~~~~~g--------~l~~-----r~~~~~~l~~~~~~~~~~~~~~~~~------------ 290 (382)
T PRK11128 237 Y-SASTIGYLWSLGVVAEVLIFAFSN--------RLFR-----RWSARDLLLLSAICGVVRWGLMGST------------ 290 (382)
T ss_pred C-CHhHHHHHHHHHHHHHHHHHHHHH--------HHHH-----HCCHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 1 011123333333333333333332 3222 4555666777888777776655443
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHH-HHHhHHHHHHHHHHHHhhhccc
Q 042477 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYT-SVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 403 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.+++.+++..++.++++++..+....+..+. |++.+++++++.+ ....+|..+|+.+.|.+.+..+
T Consensus 291 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 291 ---TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2556667788889999999999999998887 5555789999886 5567788999999998876654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=177.82 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=110.7
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
+.+.+++++|.++.+.++..+.+.++..+++++.|+++||+ |||+++..+..++.++.+++..+... +++
T Consensus 48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~a---------~~~ 117 (438)
T PRK10133 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEI---------MNY 117 (438)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhc---------CCH
Confidence 44456899999999999999999999999999999999996 99999999999999999876422110 678
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 96 SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
..++++|+++|+|.|...+..++++.|..|+++ |...++.......+|..+|+.+++.+
T Consensus 118 ~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~--------------------~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESS--------------------GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998755544 66678888888899999999887654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=198.66 Aligned_cols=349 Identities=15% Similarity=0.076 Sum_probs=208.7
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhh--HhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSS--AAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTA 81 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~--~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~ 81 (478)
+..++..+....+..++.+.++.+.+. .+++.+++.+...++++++|+++||+ |||++++.+.++..++.++..++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~~~~ 98 (1146)
T PRK08633 20 LNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIVLAY 98 (1146)
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556667776667765443 68889999999999999999999996 999999999887776666554442
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
.. .+.+.+++.|+++|++.+...|...++++|.+|+++ |++++++.....+
T Consensus 99 ~~---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~ 149 (1146)
T PRK08633 99 YL---------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN--------------------LSRANGLLEAFTI 149 (1146)
T ss_pred HH---------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc--------------------chhhhhHHHHHHH
Confidence 11 568899999999999999999999999999999877 9999999999999
Q ss_pred hhhhHHhhhhhhhccc--------c-chhHHHHHHHHHHHHHHHHHHhhcccccccCCCcc--ccCChhHHHHHHHHHHH
Q 042477 162 SGSLLGITLMSYIQDT--------F-GWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEA--LKNKPFMSIVQAIKVAA 230 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~--------~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 230 (478)
+|.++|+.+++++... + +|++.+.+..+...+..++..+..+..+...++.+ +.........
T Consensus 150 ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 222 (1146)
T PRK08633 150 VAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLW------- 222 (1146)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHH-------
Confidence 9999999999988765 2 33333333332222222222222222111100000 0000000000
Q ss_pred HhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Q 042477 231 SKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFF 310 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (478)
..+ .. +.+.+.++..+. ...+++.........+
T Consensus 223 --------------------------------------~~~-----~~-l~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 255 (1146)
T PRK08633 223 --------------------------------------RNL-----KL-LRSDRVLWLAII---GLSYFWFISQLAQANF 255 (1146)
T ss_pred --------------------------------------HHH-----HH-HhcCcHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 000 00 111111111111 1111111111111111
Q ss_pred hhhhccccccCCCcccc--CchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHH
Q 042477 311 TKQGMAMKRNIGSRFKI--PPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAA 388 (478)
Q Consensus 311 ~~~~~~~~~~lg~~~~~--~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 388 (478)
..+ +...+| .+. ..+.+.....+..++...+.+ ++.+ +.+..+.+.++.+++++++++..
T Consensus 256 ~~~---~~~~~g--~s~~~~~g~~~~~~~ig~~~g~~~~g--------~l~~-----r~~~~~~~~~~~~~~~~~~~~~~ 317 (1146)
T PRK08633 256 PAY---AKEVLG--LDNTFQVQYLLAASAIGIGIGSLLAG--------RLSG-----RHIELGLVPLGALGLALSLFLLP 317 (1146)
T ss_pred HHH---HHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHH--------HHhC-----CceEccchhHHHHHHHHHHHHHH
Confidence 111 111111 111 122232333333333333332 2222 23334455666666666665554
Q ss_pred HHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 042477 389 AVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIE 468 (478)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~ 468 (478)
.. .+.+++++..++.+++.++..+...+++.+.+|++.||+++|+.++...+|.++++.+.+.+.
T Consensus 318 ~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 318 TA---------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred Hh---------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 255666677888899999988899999999999999999999999999999988877766554
Q ss_pred h
Q 042477 469 F 469 (478)
Q Consensus 469 ~ 469 (478)
.
T Consensus 383 ~ 383 (1146)
T PRK08633 383 G 383 (1146)
T ss_pred H
Confidence 3
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-19 Score=181.06 Aligned_cols=358 Identities=11% Similarity=0.016 Sum_probs=201.5
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..+++....++++.|+++++|+++.+.+.+.+.+.+...+++++.|+++||+ |||+++.++..+..++.........
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~ 98 (420)
T PRK09528 20 FFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVLFGPFFIYVF 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777899999999999999999999999999999999999999999996 9999998877666554432221100
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+... .......+++.+..+.+.....+.. .++.++... +++..++......++
T Consensus 99 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------------~~g~~~g~~~~~~~~ 152 (420)
T PRK09528 99 APLLQ----YNILLGAIVGGIYLGFGFLAGAGAI----EAYIERVSR------------------RSGFEYGRARMWGSL 152 (420)
T ss_pred HHHHH----HHHHHHHHHHHHHhhhhhccchhhh----hhHHHHHHh------------------hccccchhhHHhhhH
Confidence 00000 0011112223333333333333333 333221110 166777888888899
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
|..++|.+++++.+ .+|+..|++.++..+++.++.+..+++.+++ ++.++ ++
T Consensus 153 g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~------------------------ 204 (420)
T PRK09528 153 GWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVAN--AL------------------------ 204 (420)
T ss_pred HHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhcc--ch------------------------
Confidence 99999999998876 5899999888776666655554433221110 00000 00
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhhhhccccccC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQ-QPVTFFTKQGMAMKRNI 321 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 321 (478)
.+ ++ . ...+++. .+ ....+.++............+..+. +.+..+..+ . .+..
T Consensus 205 -----~~----~~-------~----~~~~~~~--~~-~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~- 258 (420)
T PRK09528 205 -----GA----NA-------S----AVSLKDA--LA-LLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASF-F-ATPE- 258 (420)
T ss_pred -----hc----cc-------c----cccHHHH--HH-HccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHH-H-hccC-
Confidence 00 00 0 0000000 00 0000111111111111111111222 222211111 0 0111
Q ss_pred CCccc-cCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 042477 322 GSRFK-IPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ 400 (478)
Q Consensus 322 g~~~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 400 (478)
.+ ...+.......+...+..++..++ .+| .++++.+..+.++.+++..+..+.
T Consensus 259 ---~~~~~~g~~~~~~~~~~~~~~~~~g~l----~dr---------~g~~~~~~~~~~l~~~~~~l~~~~---------- 312 (420)
T PRK09528 259 ---QGTRVFGYLNSFQVFLEALIMFFAPFI----INR---------IGAKNALLLAGTIMAVRIIGSGFA---------- 312 (420)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------hCcchhhHHHHHHHHHHHHHHHhc----------
Confidence 11 112333333444444444444333 333 334455677777777766665543
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHH-HHHHHhHHHHHHHHHHHHhhhccc
Q 042477 401 AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFAL-YTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 401 ~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.++++++...++.+++.....+...+++.+..|++.+++..++ +++...+|+++++.+.+.+.+..|
T Consensus 313 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G 380 (420)
T PRK09528 313 -----TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG 380 (420)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2456667778888888888778888999999999999988766 678889999999999998877544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-18 Score=178.94 Aligned_cols=349 Identities=18% Similarity=0.158 Sum_probs=232.3
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
.+++...-..-++-++. ++.-|+...+++.....+...++.+++|.++||+ .|||+++.+-++.++..+++.+.....
T Consensus 22 S~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~ 99 (524)
T PF05977_consen 22 SNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFG 99 (524)
T ss_pred HHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444555554 5677889999999999999999999999999996 999999999988877666555442211
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
..+.+.+++.-++.|++.+...|+..+++.|++|+++ ..++.++.....|+..
T Consensus 100 -------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~--------------------L~~A~al~s~~~niar 152 (524)
T PF05977_consen 100 -------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED--------------------LPAANALNSISFNIAR 152 (524)
T ss_pred -------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh--------------------HHHHHHHHHHHHHHHH
Confidence 1567888899999999999999999999999999887 8999999999999999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
.+||.++|.+...+|-...|.+.++..++..+++...++..+ ++. .+.....+-++...+
T Consensus 153 ~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~----~~~e~~~~~l~~G~r------------- 212 (524)
T PF05977_consen 153 IIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSS----LPRERFFSALREGLR------------- 212 (524)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccc----cchhhhhhhHHHHHH-------------
Confidence 999999999988889999999999887776655544433211 111 110111110000000
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhhhccccccCCC
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVIFQQPVTFFTKQGMAMKRNIGS 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 323 (478)
+ +.+.+.+...+.. +++........ ..++.. ..+.+++
T Consensus 213 --------------------------y--------v~~~~~l~~~l~~~~~~~l~~~a~~----aLlPl~---a~~~l~~ 251 (524)
T PF05977_consen 213 --------------------------Y--------VRSSPPLRSVLLRSFLFNLFASAVW----ALLPLF---ARDVLGG 251 (524)
T ss_pred --------------------------H--------HhcchHHHHHHHHHHHHHHhhhHHH----HhhhHH---HHHHhCC
Confidence 0 1111111111110 11111111111 111111 1111111
Q ss_pred ccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 042477 324 RFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA 403 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (478)
-...-+.+.+...++.++...+..+ .++ +.+..+.+..+.+..+++++..++.
T Consensus 252 -~a~~yGll~a~~gvGai~Gal~~~~-----l~~--------~~~~~~lv~~~~~~~a~~~~~lal~------------- 304 (524)
T PF05977_consen 252 -GASGYGLLLAAFGVGAILGALLLPR-----LRR--------RLSSRRLVLLASLLFALALLLLALS------------- 304 (524)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHH-----hhc--------ccCcchhhHHHHHHHHHHHHHHhcc-------------
Confidence 0112244444444444444433322 222 3444556677777777776666553
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 404 KPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 404 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.+.+...+..++.|++.....+...+...+.+|+++||+.++++.+....+..+|+.+.|.+.+..+
T Consensus 305 --~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 305 --PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3667777788899999999999999999999999999999999999999999999999998877655
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=176.18 Aligned_cols=359 Identities=11% Similarity=0.022 Sum_probs=209.6
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++.-.++..+.++++.|+++++|.++.+.+++.+.+.+...+++++.|+++||+ |||+.+..+.....++.........
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 90 (396)
T TIGR00882 12 FLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLFAPFFIYVF 90 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777788999999999999999999999999999999999999999996 9999998887766655443221100
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+.. .......+++++++.+++.+...|....+..|..+ + ++..++......++
T Consensus 91 ~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~g~~~~~~~~ 144 (396)
T TIGR00882 91 GPLL----QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N--------------------SNFEYGKARMFGCV 144 (396)
T ss_pred hhHH----HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h--------------------cccccchhhhhccc
Confidence 0000 00123345677888899988888888877766422 1 34566777777899
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
|..+||.+++.+.+ .+|+.+|.+.+++.++..++.+...++ +|+++ +. .+ . .
T Consensus 145 g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~---~~-~~-----------~-~------- 196 (396)
T TIGR00882 145 GWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPK----APSSA---TV-AN-----------A-L------- 196 (396)
T ss_pred HHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCC----Cchhh---hh-hc-----------c-c-------
Confidence 99999999998865 699999998877666655444332221 11110 00 00 0 0
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
+++ + . ..+..+..+ +...|.++..+.........+..+.+....+.. ...... +
T Consensus 197 ~~~--~--------------~------~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~--~~~~~~-~ 250 (396)
T TIGR00882 197 GAN--A--------------S------AFSLKLALE-LFRQRKFWMFVLYVVGVACVYDVFDQQFANFFT--SFFATP-Q 250 (396)
T ss_pred ccc--c--------------C------CCCHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhcccc-c
Confidence 000 0 0 000000000 111122222221111111111111111111111 111110 0
Q ss_pred Ccccc-CchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 042477 323 SRFKI-PPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQA 401 (478)
Q Consensus 323 ~~~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (478)
.+. ..+...+...+...+......+ +.+ +.++++.+.++.++.++++......
T Consensus 251 --~~~~~~g~~~~~~~i~~~~~~~~~g~----l~~---------r~g~~~~l~~~~~l~~l~~~~~~~~----------- 304 (396)
T TIGR00882 251 --QGTRVFGYVTTMGELLNALIMFCAPL----IIN---------RIGAKNALLIAGTIMSVRIIGSSFA----------- 304 (396)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HhccchhHHHHHHHHHHHHHHHHhc-----------
Confidence 010 1122223333333333333222 222 3444455677777777766554332
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHH-HHHHHhHHHHHHHHHHHHhhhccc
Q 042477 402 EAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFAL-YTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 402 ~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.+++++++..++.+++.........++..+..|++.+++..+. ++....+|+++++.+.+.+.+..|
T Consensus 305 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G 372 (396)
T TIGR00882 305 ----TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG 372 (396)
T ss_pred ----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 3556666777888888777766777788888999999887776 678899999999999998877654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-18 Score=171.92 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=136.9
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
++......+| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+++..+
T Consensus 18 ~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~------- 88 (392)
T PRK10473 18 GIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLA------- 88 (392)
T ss_pred HHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHh-------
Confidence 3333334444 44578999999999999999999999999999999996 99999999999999999888877
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
++...++++|+++|++.+...+...+++.|.+|+++ |++++++.+...++|..++
T Consensus 89 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~i~~~~~ 143 (392)
T PRK10473 89 -----ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR--------------------RAKVLSLLNGITCIIPVLA 143 (392)
T ss_pred -----CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999988999999999999877 9999999999999999999
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 168 ITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 168 ~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
|.+++.+.+..+|+..|.+.++..++..++.++.
T Consensus 144 ~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 144 PVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888899999988877666555444333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=197.07 Aligned_cols=335 Identities=13% Similarity=0.024 Sum_probs=195.5
Q ss_pred hhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHH---HHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHH
Q 042477 29 SSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSF---IYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLI 105 (478)
Q Consensus 29 ~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~---~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (478)
...++..+++.+...++++++|+++||+ |||+++..... +..+..++.... .+.+.++++|+++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~------------~s~~~l~~~~~l~ 118 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL------------NSVPLLFAALFLM 118 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHH
Confidence 3467788889999999999999999997 99997643222 222222222222 5688999999999
Q ss_pred HHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccchhHHHH
Q 042477 106 SLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFA 185 (478)
Q Consensus 106 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~ 185 (478)
|++.+...|...+++.|++|+++ |++++++...+.++|.++||.++|++....+|++.|.
T Consensus 119 gi~~a~~~p~~~a~l~~~~~~~~--------------------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 119 GIHSALFGPIKYSILPDHLNKDE--------------------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred HHHHHhhchHHHHhhHhhcCccc--------------------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999887 9999999999999999999999999998899999985
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccccCCCCCc
Q 042477 186 IPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKE 265 (478)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (478)
..++..+++.++.+.. ++.+..+++.+...++..+....
T Consensus 179 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 217 (1140)
T PRK06814 179 LLMGIAVLGWLASLFI-PKTGNAAPDLKIDRNIIRSTITL---------------------------------------- 217 (1140)
T ss_pred HHHHHHHHHHHHHhhC-CCCCCCCCCCeeccchHHHHHHH----------------------------------------
Confidence 4444444443333332 21111101000000000000000
Q ss_pred ccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHH
Q 042477 266 LDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLM 344 (478)
Q Consensus 266 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~ 344 (478)
+ .. +...+.++..... +...........+. ..+ +...++. -....+.+.....+..++..
T Consensus 218 -----~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~---~~~~~g~-~~~~~g~~~~~~~~g~~ig~ 278 (1140)
T PRK06814 218 -----L-----KY-AKADKRIWLAILGISWFWLVGAVVLSQL----PLL---AKETLGG-DENVATLFLAVFSVGVAVGS 278 (1140)
T ss_pred -----H-----HH-HhcCchHHHHHHHHHHHHHHHHHHHHHh----HHH---HHHHcCC-chHHHHHHHHHHHHHHHHHH
Confidence 0 00 1111112211111 11111111111111 111 1111111 01123344444455555555
Q ss_pred HHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---C--CccchHHHHHHHHHHHH
Q 042477 345 PLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQA---E--AKPITIFWLLPEYVLLG 419 (478)
Q Consensus 345 ~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~li~~~~l~g 419 (478)
.+..++ .++ ....+.+..+.++.+++.+...+...........- . ....+.|.+++..+++|
T Consensus 279 ~~~g~l----~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (1140)
T PRK06814 279 FLASKL----SEG---------RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA 345 (1140)
T ss_pred HHHHHH----hCC---------ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence 444433 211 11122334444444443332222100000000000 0 00135566777888899
Q ss_pred HHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 420 ISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 420 ~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
++.++..+...+++.+.+|++.||+++|+.++...+|..+++.+.+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 346 AAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888764
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-18 Score=169.02 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=120.8
Q ss_pred hhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc----cchhHHH-HHHHHHHHHhhHHhhhccccccc
Q 042477 12 VASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY----WDRHSTI-LAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 12 ~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Gr~~~i-~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
+.......+.+++|+|.++.++.... .+...+ .++.|.++||+ +||||.+ +.+.++..+....+.+...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 33434444446889999999998655 333333 88999999995 3899974 5667777776666655421
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
..+.+.+....++.+++.+...+...+++.|++|+++ |+++.++...+.++|.++
T Consensus 80 -----~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------------------r~~~~~~~~~~~~~G~~~ 134 (356)
T TIGR00901 80 -----STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE--------------------LGYGSTIYIVGYRAGMLL 134 (356)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh--------------------hchHHHHHHHHHHHHHHH
Confidence 1445566666777788888888999999999998877 999999999999999999
Q ss_pred Hhhhhhhhccccc--------hhHHHHHHHHHHHHHHHHHHhh
Q 042477 167 GITLMSYIQDTFG--------WVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 167 g~~~~~~i~~~~g--------~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
++.+++++....| ||..|.+.++..++..+..++.
T Consensus 135 ~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 135 SGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred HHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887778 9999998888766655544433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=175.81 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=120.2
Q ss_pred CCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHH
Q 042477 25 KMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSL 104 (478)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (478)
+.++.+.+++.+.+.++..++.++.|+++||+ |||+++..++++..++.++...+... .+ ..+...++++|++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~-----~~-~~~~~~~~~~r~l 124 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGS-----SP-KSVMATLCFWRFW 124 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCc-----cc-chHHHHHHHHHHH
Confidence 45566778999999999999999999999996 99999999999999998887776210 00 0126789999999
Q ss_pred HHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc--------
Q 042477 105 ISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD-------- 176 (478)
Q Consensus 105 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~-------- 176 (478)
+|++.|...+..+.+++|.+|+++ |+++.++.+....+|..+++.++..+..
T Consensus 125 ~G~~~g~~~~~~~~~~~e~~p~~~--------------------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 184 (502)
T TIGR00887 125 LGVGIGGDYPLSAIITSEFATKKW--------------------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA 184 (502)
T ss_pred HHHHHhhhhHHHHHHHHHhcChhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999988 9999999999999999999887764421
Q ss_pred ---------------ccchhHHHHHHHHHHHHHHHHH
Q 042477 177 ---------------TFGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 177 ---------------~~g~~~~f~~~~~~~~~~~~~~ 198 (478)
..+||+.|.+.++..++..++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 185 AADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred ccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 2479999987776555444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-18 Score=172.64 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=132.5
Q ss_pred hhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCC
Q 042477 11 GVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPAN 90 (478)
Q Consensus 11 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~ 90 (478)
++...+...+++++|.++.+.+++.+.+.++..+++++.|++.||+ |||+++..+.++..++.++...+...
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~~------- 91 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAEI------- 91 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 3445566777899999999999999999999999999999999996 99999999999999998886544211
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhh
Q 042477 91 TTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 170 (478)
.+++.++++|++.|+|.|...+..++++.+..|+++ |++..+..+...++|..+||.+
T Consensus 92 --~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~lG~~~g~~i 149 (410)
T TIGR00885 92 --MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST--------------------ATRRLNLAQSFNPFGSIIGMVV 149 (410)
T ss_pred --ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH--------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999988776 8888999999999999999999
Q ss_pred hhhhcc--------------------------ccchhHHHHHHHHHHHHHHHH
Q 042477 171 MSYIQD--------------------------TFGWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 171 ~~~i~~--------------------------~~g~~~~f~~~~~~~~~~~~~ 197 (478)
++.+.. ..+||.+|++.+++.++..++
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 150 AQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886632 246999998777655544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=176.98 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=130.6
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
....++++ +|.++.+.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++.++....... ..+
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 117 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA--------TSS 117 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc--------cch
Confidence 34567765 599999999999999999999999999999996 99999999999999988876654110 034
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh-
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY- 173 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~- 173 (478)
...+++.|++.|++.|...+.....+.|.+|+++ |++++++++...++|+.+++.+.+.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~--------------------rg~~~~~~~~~~~~g~~~~~~l~~~~ 177 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE--------------------RGTIVSIWNCAHNIGGGIPPLLVLLG 177 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc--------------------chhHHHHHHHHHHhHhHHHHHHHHHH
Confidence 6677889999999999998989999999999887 9999999999999999999887765
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
+..+.+||..|++.++..++..++.++..+
T Consensus 178 ~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 178 MAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444579999999988776665544444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-18 Score=177.73 Aligned_cols=151 Identities=13% Similarity=0.103 Sum_probs=124.2
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchH
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSS 96 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 96 (478)
..++++++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++.+.+ .+..
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~------------~s~~ 125 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCMSLV------------SSAT 125 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHh------------cCHH
Confidence 3467789999999999999888899999999999999996 99999999999999998888877 6778
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc-
Q 042477 97 FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ- 175 (478)
Q Consensus 97 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~- 175 (478)
.+++.|+++|++.+...+ ...+++|++|+++ |++++++.+...++|+.+++.+.+.+.
T Consensus 126 ~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~--------------------rg~a~g~~~~~~~~g~~~~~~~~~~i~~ 184 (476)
T PLN00028 126 GFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI--------------------VGTANGIAAGWGNLGGGVTQLLMPLVFP 184 (476)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh--------------------eeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999887543 5567899999877 999999988888888888876665442
Q ss_pred ---c-----ccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 176 ---D-----TFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 176 ---~-----~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
+ ..|||+.|++.+++.++..++.++.
T Consensus 185 ~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 185 LIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2589999999887766655444443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-18 Score=167.66 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=140.3
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
..+++.++.++|.+|.|.+.+.+++.+.++-.+.|.++||. +.|+.+..++++.++..++..++ ++.
T Consensus 51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~Gfs------------~s~ 117 (448)
T COG2271 51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFGFS------------PSL 117 (448)
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHhhh------------hHH
Confidence 56778888999999999999999999999999999999996 99999999999999999999999 788
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh--hh
Q 042477 96 SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM--SY 173 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~--~~ 173 (478)
..+.+..++.|.-.|.-.|.+...++.++++++ ||+..+.++.+.|+|+.+.|.+. ++
T Consensus 118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e--------------------RG~~~siWn~shNiGGal~~~~~~la~ 177 (448)
T COG2271 118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE--------------------RGTWWSIWNTSHNIGGALAPLVALLAF 177 (448)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc--------------------cCceEEEehhhhhcccchHHHHHHHHH
Confidence 999999999999999999999999999999988 99999999999999999999999 89
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+..+.+||..|++++++.++..++.++
T Consensus 178 ~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 178 FAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 988899999999999876665444444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=164.85 Aligned_cols=166 Identities=7% Similarity=-0.130 Sum_probs=128.1
Q ss_pred hhhhhhhHHHHHHhhh-hcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 7 FAFKGVASNLVTYLTD-VMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
|.-..+.+.+..++.+ ++|++++|.+++.+++.+...++.++.|++.||+ |.|+++.++.++..++.++..++....
T Consensus 47 F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~~~- 124 (462)
T PRK15034 47 FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQNP- 124 (462)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 3444455556677655 7999999999999999999999999999999997 999999999999999988887641100
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+++..+++.|++.|++ |...+.....+++++|+++ |+++++++....|+|..
T Consensus 125 ------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~--------------------rG~A~Gi~~g~G~~G~~ 177 (462)
T PRK15034 125 ------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK--------------------QGSALGINGGLGNLGVS 177 (462)
T ss_pred ------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH--------------------hHHHHHHHHHHHhhHHH
Confidence 15689999999999998 7778899999999999888 99999999777778877
Q ss_pred HHhhhhhhhc-----c-------------ccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 166 LGITLMSYIQ-----D-------------TFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 166 ig~~~~~~i~-----~-------------~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
+++++++.+. . ..+|+.++.+-.+..++..++.++.
T Consensus 178 l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 178 VMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666554322 1 3347776666666555555454443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-17 Score=157.54 Aligned_cols=347 Identities=14% Similarity=0.136 Sum_probs=202.6
Q ss_pred ChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHH
Q 042477 27 SNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLIS 106 (478)
Q Consensus 27 ~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 106 (478)
+..-+|.+-+.|++.+.+.++..|.++||+ |||.++.++++..++..++.+.+ .++..+.++|++.|
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S------------~~F~afv~aR~l~G 132 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS------------RNFAAFVLARFLGG 132 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhh
Confidence 444578999999999999999999999998 99999999999999988888888 77877778899999
Q ss_pred HhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc-c-cchhHHH
Q 042477 107 LGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD-T-FGWVIGF 184 (478)
Q Consensus 107 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~-~-~g~~~~f 184 (478)
+..|-. ..+.++++|.+++++ |+.+++....+..+|..+||.++|++.. . ..-.++|
T Consensus 133 i~kgnl-~v~rAiisdV~sek~--------------------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~ 191 (451)
T KOG2615|consen 133 IFKGNL-SVIRAIISDVVSEKY--------------------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPF 191 (451)
T ss_pred hccCch-HHHHHHHHhhcChhh--------------------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCch
Confidence 998875 678899999999877 9999999999999999999999999876 1 2223345
Q ss_pred HHHHHHHHH-HHH-HHHhhcccccccCCCcc--ccCChhHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccccC
Q 042477 185 AIPTIAMLT-STA-FFSFASRFCKKKSDHEA--LKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKPLCCN 260 (478)
Q Consensus 185 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (478)
.++..+..+ ... ++.+. -+.++.-|+++ ++.++..+...-. .+....+..++..
T Consensus 192 alP~~~v~i~a~~~v~~~~-~~lpETL~~rk~~~~~~~~~~~~~~~------------------~~~~~~~~~~~v~--- 249 (451)
T KOG2615|consen 192 ALPCLLVFILAAGDVTFFP-WFLPETLPLRKRNDEHSTLQEAADDR------------------LALLKFARIFKVA--- 249 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCccccchhhcccccchhhhhhhh------------------hhhcchhhhhhhh---
Confidence 444433222 211 11111 11122112110 0001111100000 0000000000000
Q ss_pred CCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHHHH
Q 042477 261 DQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSI 340 (478)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 340 (478)
....++..+ . ++..+.+ . ..+..|.-..+.+-.....+++ + +++..+...........
T Consensus 250 ------~lrn~p~~~--~-i~~~~i~-~---------l~~~ly~~l~s~~~~t~~~l~~--~-rfg~ss~~~G~vl~~tG 307 (451)
T KOG2615|consen 250 ------ALRNPPLLD--F-ISVLRIF-G---------LHYFLYLELFSGLENTVLFLTH--G-RFGYSSMQQGKVLSTTG 307 (451)
T ss_pred ------hhcCccccc--h-HHHHHHH-H---------HHHHHHHHHHHHHHhhHHHhhc--C-ccCCChhhheeeeehhh
Confidence 000111110 0 1111111 0 0011111111211111112211 1 14444433222222223
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHH
Q 042477 341 ILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGI 420 (478)
Q Consensus 341 ~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~ 420 (478)
+.+.++. ..+.|..++... ...-.+..++.++.-.+++.... .....+.....+.++
T Consensus 308 l~m~~~q-l~~~~~l~~~~~-------~~~a~l~~~l~~~vP~~llls~~---------------~~~~~l~~~s~l~sf 364 (451)
T KOG2615|consen 308 LLMLVIQ-LALVPILPRYKG-------NIKAVLLFSLLLIVPAFLLLSLA---------------RTPVVLYLGSTLKSF 364 (451)
T ss_pred HHHHHHH-Hhcccccccccc-------chhhHHHHHHHHHHHHHHHHhcc---------------ccchhhhHHHHHHHH
Confidence 3332222 222333333211 12223334444444444444332 233566777888899
Q ss_pred HHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccC
Q 042477 421 SDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSR 474 (478)
Q Consensus 421 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~~ 474 (478)
......+....+..+..|++.||+.+|+.....+++-++||.+.|.+..+...+
T Consensus 365 ~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~ 418 (451)
T KOG2615|consen 365 STASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGA 418 (451)
T ss_pred HHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCC
Confidence 999999999999999999999999999999999999999999998887776543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-16 Score=159.00 Aligned_cols=355 Identities=13% Similarity=0.091 Sum_probs=200.3
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccch-hHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDR-HSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
+++....+.++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++..++..+....
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~~~~~----- 89 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFFAAQV----- 89 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHh-----
Confidence 34444557899999999999999999999999999999999999999996 65 778888888887777777766
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
++.+.+++.|++.+++.+...|...++..+...+... | .+ +.-.|.+.++ .+|.+
T Consensus 90 -------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~---------~--~~-~~~~~~r~~G------~lG~~ 144 (418)
T TIGR00889 90 -------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGL---------D--VV-TDFPPIRVMG------TIGFI 144 (418)
T ss_pred -------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCC---------C--ch-hcCCCeeeeh------hHHHH
Confidence 6678888889988888777666666554333221100 0 00 0001445554 47888
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCC
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKS 245 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+||.+++.+.....|. +|++.++..++..++. +..++ .++++++++....+
T Consensus 145 ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~-~~~~e---~~~~~~~~~~~~~~------------------------ 195 (418)
T TIGR00889 145 AAMWAVSLLDIELSNI-QLYITAGSSALLGVFA-LTLPD---IPVAKSTAKMSIKV------------------------ 195 (418)
T ss_pred HHHHHHHHhcccchhH-HHHHHHHHHHHHHHHH-hcCCC---CCCCccccccCHHH------------------------
Confidence 8888888774333343 4555555444444332 22222 11111000000000
Q ss_pred ccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhccCcchhhhhhccccccCCCc
Q 042477 246 DAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSR 324 (478)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 324 (478)
.++. ...+ ..+.++++..... +.........+ +....+... ...+...+.+
T Consensus 196 ------------------------~~~~-~~~~-~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~ 247 (418)
T TIGR00889 196 ------------------------MLGL-DAFI-LFKNKRMAIFFFFSMLLGAPLQITN-IFGNGFLHE-FGRNPEFADS 247 (418)
T ss_pred ------------------------Hhhh-hHHH-HhcCCCeeeHHHHHHHHHhHHHHHH-HhHHHHHHH-hcccccccch
Confidence 0000 0000 0000111111111 11111111111 111111100 0001000000
Q ss_pred cc-cCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 042477 325 FK-IPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA 403 (478)
Q Consensus 325 ~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (478)
+. ...+.......+..++...+.+++ .+ +.++++.+.++.++.++++.+......
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l----~d---------r~g~r~~l~~~~~~~~v~~~l~~~~~~----------- 303 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFF----LK---------RFGIKKVMLLSLVAWALRFGFFAYGDP----------- 303 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH----HH---------HhCcHHHHHHHHHHHHHHHHHHHHcCc-----------
Confidence 00 111333334444444444444333 22 344556677788777777655543210
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHH-HHHhHHHHHHHHHHHHhhhcccc
Q 042477 404 KPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYT-SVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 404 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
.....+.+++..++.+++++...+....++.+.+|++.||+++|+.+ ...++|+.+|+.+.|.+.+..++
T Consensus 304 ~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~ 374 (418)
T TIGR00889 304 EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA 374 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 01123445667788999999999999999999999999999999997 67889999999999988876654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=160.51 Aligned_cols=360 Identities=15% Similarity=0.089 Sum_probs=211.0
Q ss_pred hhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccc
Q 042477 32 AKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAG 111 (478)
Q Consensus 32 ~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 111 (478)
+.+++++.++..+++.++|+++||+ |||+.++++.++..++.++...+... +...+++++|++.|+..|.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~---------~~~e~li~GR~i~Gl~~gl 132 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA---------PSFEMLILGRLIVGLACGL 132 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHhHH
Confidence 4678899999999999999999997 99999999999999988888777442 6788999999999999999
Q ss_pred cccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh-hh-ccccchhHHHHHHHH
Q 042477 112 YNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS-YI-QDTFGWVIGFAIPTI 189 (478)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~-~i-~~~~g~~~~f~~~~~ 189 (478)
.....+.++.|..|.+. ||..-.......++|.++|..++. .+ .+.-.|++.+.++.+
T Consensus 133 ~~~~~pmyl~E~sP~~~--------------------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 133 STGLVPMYLTEISPKNL--------------------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HHHHHHHHHhhcChhhh--------------------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence 99999999999999988 999999999999999999966653 33 455679999999988
Q ss_pred HHHHHHHHHHhhccc--cccc-CCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccccCCCCCcc
Q 042477 190 AMLTSTAFFSFASRF--CKKK-SDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKEL 266 (478)
Q Consensus 190 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (478)
..++..+.+.++... +--. +.+. .+..+.++....+... + ++.+..++....++.+.
T Consensus 193 ~~~~~l~~l~~~PESPk~Ll~~k~~~-------~~A~~sl~~y~G~~~~--------~---~~~e~~~~e~~~~~~~~-- 252 (485)
T KOG0569|consen 193 PALLQLALLPFLPESPKYLLIKKGDE-------EEARKALKFYRGKEDV--------E---AEIEEMLREIEEEELEK-- 252 (485)
T ss_pred HHHHHHHHHhcCCCCcchHHHHcCCH-------HHHHHHHHHHhCCCcc--------h---hHHHHHHHHHHHhcccc--
Confidence 877777776665321 1111 1111 1222222221111100 0 11111000000000000
Q ss_pred cccCCCCCCchhhH---HHHHHHHHHHHHHHHHHHHHHHhccCcchhh--hhhccccccCCCccccCchhhcchhHHH-H
Q 042477 267 DDELENPKNVKHAV---QNVKILLRLLPIWTMLLMFAVIFQQPVTFFT--KQGMAMKRNIGSRFKIPPATLQSAITVS-I 340 (478)
Q Consensus 267 ~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~~~~~~~~~~~~-~ 340 (478)
-++.+..+-. ..|+.....+.+ ...+|..+... .+...+-.+.| +......+.+..... .
T Consensus 253 ----~~~~sl~~~~~~~~lR~~~~i~~~v--------~~~qq~sGi~ai~~Yst~i~~~aG--~~~~~a~~an~~~g~v~ 318 (485)
T KOG0569|consen 253 ----KKQISLRQLLKNPTLRRPLLIGIVV--------SFAQQFSGINAIFFYSTSIFKTAG--FTPEEAQYANLGIGIVN 318 (485)
T ss_pred ----ccCCcHHHHhcCcchhHHHHHHHHH--------HHHHHhcCcceeHHHHHHHHHHcC--CCHHHHHHHHHHHHHHH
Confidence 0111111101 112221111111 12222222111 11111222212 222222222222222 2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHH
Q 042477 341 ILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGI 420 (478)
Q Consensus 341 ~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~ 420 (478)
++...+... +.+| .+++..+..++.++.+..++....+....... ...++..++..+++...
T Consensus 319 ~~~t~~~~~----lid~---------~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 319 LLSTLVSPF----LIDR---------LGRRPLLLISLSLMAVALLLMSIALFLSNSFG-----SWLSYLCIAAIFLFIIS 380 (485)
T ss_pred HHHHHHHHH----HHHh---------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHh
Confidence 222222222 2233 33345577777777777666655544322110 01111112222223333
Q ss_pred HHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 421 SDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 421 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
......|..+-+..|.+|++.|+.++++....+++.+++-....+.+++..|.
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~ 433 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP 433 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445688889999999999999999999999999999999999988887663
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=158.49 Aligned_cols=398 Identities=11% Similarity=0.025 Sum_probs=227.6
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhh---ccchhHHHHHH-HHHHHHhhHHhhhc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADS---YWDRHSTILAF-SFIYVLGLMALTST 80 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~---~~Gr~~~i~~~-~~~~~ig~~l~~~~ 80 (478)
-+++|-...++++.|+ +++|.+....+.+..+..+...+.+|+.|+++|| .+||||.++.+ .....++.+++..+
T Consensus 16 iq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~ 94 (477)
T TIGR01301 16 VQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA 94 (477)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 3567777777788877 5899999999999999999999999999999994 24999998775 66666676776665
Q ss_pred ccccccCCC--CC---ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh
Q 042477 81 AFAWAESPA--NT---TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW 155 (478)
Q Consensus 81 ~~~~~~~~~--~~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 155 (478)
...+....+ +. ......++++..+..++....++...++++|.+|+++.+ ++.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~------------------~~~a~~~ 156 (477)
T TIGR01301 95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR------------------TRIANAY 156 (477)
T ss_pred chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH------------------HHHHHHH
Confidence 322111000 00 011134455555667788888889999999999987621 4689999
Q ss_pred HHHHHhhhhhHHhhhhhhh--cccc-------------chhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhH
Q 042477 156 WYFGVCSGSLLGITLMSYI--QDTF-------------GWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFM 220 (478)
Q Consensus 156 ~~~~~~~G~~ig~~~~~~i--~~~~-------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (478)
.....++|+.+|+.++++. .+.+ +.+..|++.+++.+++.++..+..++.+..++++ .+.
T Consensus 157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~----~~~- 231 (477)
T TIGR01301 157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD----FIN- 231 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc----chh-
Confidence 9999999999999998864 2211 6788999999888888777766655432111110 000
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHH-HHHHHHHHHHHHHHHH
Q 042477 221 SIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNV-KILLRLLPIWTMLLMF 299 (478)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~ 299 (478)
++.+..++. .. ....++. .+. +.+. |...+++..-.+.=+-
T Consensus 232 ---------------------------~~~~~~~~~------~~---~~~~~~i-~~~-~~~mP~~m~~l~~vqffsW~a 273 (477)
T TIGR01301 232 ---------------------------SEAAPPSKH------GE---EAFFGEL-FGA-FKYLPRPVWILLLVTCLNWIA 273 (477)
T ss_pred ---------------------------hhccccccc------ch---hhhHHHH-HHH-HHHCCHHHHHHHHHHHHHHHH
Confidence 000000000 00 0000000 000 1111 1222222222222222
Q ss_pred HHHhccCcchhhhhh-ccccccCCCccccCchh-hcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHH
Q 042477 300 AVIFQQPVTFFTKQG-MAMKRNIGSRFKIPPAT-LQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGM 377 (478)
Q Consensus 300 ~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~ 377 (478)
|..+..+.+.+.-+. .+-+.... -....+. +.........+...+...++.++.+|.+. +++.-.++.
T Consensus 274 ~f~~~~y~T~~vg~~v~~~~~~~~--~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~--------~k~~~~~s~ 343 (477)
T TIGR01301 274 WFPFILFDTDWMGREVYGGSVNQG--AKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA--------GKRLWGIVN 343 (477)
T ss_pred HHHHHHhccHHHHHHHcCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chhHHHHHH
Confidence 333333334333211 01010000 0000000 01111111112222333343444443321 122336777
Q ss_pred HHHHHHHHHHHHHHHHHh---hh-hccCC-Cccch-HHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCc--hhHHHHHHHH
Q 042477 378 FLTSIAMVIAAAVETKRL---QR-SKQAE-AKPIT-IFWLLPEYVLLGISDIFTVVAMQEFFYNEVPV--RMRTMGFALY 449 (478)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~---~~-~~~~~-~~~~~-~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~~g~~ 449 (478)
++.+++++...+...... .. +.++. ..+.. .+..+..+.+.|+........-++++.+..|+ +..|.+||+.
T Consensus 344 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgil 423 (477)
T TIGR01301 344 IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVL 423 (477)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHH
Confidence 788888877765532100 00 00000 00111 36677788999999999999999999999995 4559999999
Q ss_pred HHHHhHHHHHHHHHHHHhhhccccC
Q 042477 450 TSVFGVGSFLSALLISVIEFFTSSR 474 (478)
Q Consensus 450 ~~~~~~g~~lg~~i~~~~~~~~~~~ 474 (478)
|++..+...+.+...+.+.+..+++
T Consensus 424 N~~I~lpQii~sl~~g~~~~~~g~~ 448 (477)
T TIGR01301 424 NLAIVIPQIIVSLGSGPWDQLFGGG 448 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999998888876666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-15 Score=154.97 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=125.5
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhcc-----chhHH-HHHHHHHHHHhhHHhhhc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYW-----DRHST-ILAFSFIYVLGLMALTST 80 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-----Gr~~~-i~~~~~~~~ig~~l~~~~ 80 (478)
+.++.....++.|++ +.|.+.++.+..... ... .++.++.|+++|| + ||||. +..+.+...++...++..
T Consensus 26 l~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~ 101 (491)
T PRK11010 26 LPLALTSGTLQAWMT-VENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFL 101 (491)
T ss_pred HHHHHHHHHHHHHHH-hCCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 445555666788875 568998898886322 222 3688999999999 5 99886 557777676777666655
Q ss_pred ccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 81 AFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
.. ..+.+.+.+.+++.+++.+...+...++..|++|+++ |+++.++...+.
T Consensus 102 ~~---------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~--------------------rg~~~~i~~~g~ 152 (491)
T PRK11010 102 EP---------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE--------------------RGAGAAISVLGY 152 (491)
T ss_pred CC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--------------------hHHHHHHHHHHH
Confidence 21 1567788889999999999999999999999999877 999999999999
Q ss_pred hhhhhHHhhhhhhhcc-ccchhHHHHHHHHHHHHHHHHHH
Q 042477 161 CSGSLLGITLMSYIQD-TFGWVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~-~~g~~~~f~~~~~~~~~~~~~~~ 199 (478)
++|.++++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 153 ~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 153 RLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 57999999998876666544443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.8e-16 Score=162.81 Aligned_cols=386 Identities=17% Similarity=0.116 Sum_probs=220.4
Q ss_pred hhhhHHHHHHhhhhc-----CCCh--hhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 10 KGVASNLVTYLTDVM-----KMSN--SSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l-----~~~~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
.+..+.+..++++.. ..+. .+.+++.+.+.++..+++++.|+++|++ |||++++.+.+++.+|.++...+
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-- 139 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-- 139 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh--
Confidence 355555656665432 1122 3448999999999999999999999996 99999999999999999999999
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+..+++++|++.|+|.|+.....+.+++|..|++. |+...+.++...++
T Consensus 140 ----------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~--------------------RG~l~~~~~l~~~~ 189 (513)
T KOG0254|consen 140 ----------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI--------------------RGTLVSLYQLFITI 189 (513)
T ss_pred ----------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh--------------------hHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999887 99999999999999
Q ss_pred hhhHHhhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCC
Q 042477 163 GSLLGITLMSYIQDT-FGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISP 241 (478)
Q Consensus 163 G~~ig~~~~~~i~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (478)
|.+++..++....+. .+||..+.+..+..++..+..++ .| +.|+...+.....+..+.+....... .
T Consensus 190 Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~-~p----esp~~L~~~g~~~~a~~~l~~l~g~~-------~ 257 (513)
T KOG0254|consen 190 GILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLF-LP----ESPRWLIEKGRLEEAKRSLKRLRGLS-------P 257 (513)
T ss_pred HHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHh-CC----CChHHHHHcCChHHHHHHHHHHhCCC-------C
Confidence 999995554444332 58998888777666655555333 22 11211000112222222222222211 0
Q ss_pred CCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccC
Q 042477 242 IDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNI 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (478)
.+.+ .+.+....... .+.........|.+... ...+|+....+.+..++........ ..+...+-+..
T Consensus 258 ~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~---~~~~~~~~i~~~l~~fqq~tG~~~~------~~Y~~~if~~~ 325 (513)
T KOG0254|consen 258 EDVE--VELELLKIKLL-VEAEVAEGKASWGELFS---PKVRKRLIIGLLLQLFQQLTGINYV------FYYSTTIFKSA 325 (513)
T ss_pred cchH--HHHHHHHHHHH-HhhhcccccccHHHhcC---cchHHHHHHHHHHHHHHHHhCCceE------EeehHHHHHhc
Confidence 0010 11111110000 00000000000111100 0122333222222222222111111 11111222222
Q ss_pred CCccccCchhhcchhHHHHH-HHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 042477 322 GSRFKIPPATLQSAITVSII-LLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQ 400 (478)
Q Consensus 322 g~~~~~~~~~~~~~~~~~~~-i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 400 (478)
| ++.+. ...++....+. +...+...+++++ +++..+..|...+.+++++.+..........+
T Consensus 326 g--~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-------------gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~- 388 (513)
T KOG0254|consen 326 G--LKSDT-FLASIILGVVNFLGTLVATYLVDRF-------------GRRKLLLFGAAGMSICLVILAVVGVFALYYPN- 388 (513)
T ss_pred C--CCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-
Confidence 2 12222 22222222222 2222222333322 33455788888888888877765332111000
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 042477 401 AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 401 ~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
......+..++...++.........|..+.+..|..|.+.|+++.++....+++.+++-..........
T Consensus 389 -~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 389 -SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred -cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011223444444555555555666677778899999999999999999999999998887766655444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-15 Score=152.46 Aligned_cols=357 Identities=12% Similarity=0.088 Sum_probs=193.6
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc---cchhHHH-HHHHHHHHHhhHHhh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY---WDRHSTI-LAFSFIYVLGLMALT 78 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Gr~~~i-~~~~~~~~ig~~l~~ 78 (478)
+..++.+..+..+++.|+++.+|+++.++|.+.....+...+..++.|+++||. +||||.. ..+.+...+...++.
T Consensus 18 ~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~ 97 (448)
T PRK09848 18 VANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF 97 (448)
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 345566666778899999999999999999999999999999999999999994 3777755 555554554444432
Q ss_pred hcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 79 STAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
.... .. .........++...+.+++.+...+...++..+..++++ +|.+..++..+
T Consensus 98 ~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-------------------~r~~~~~~r~~ 153 (448)
T PRK09848 98 WVPT--DW---SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-------------------SRARLGAARGI 153 (448)
T ss_pred hCcC--CC---CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-------------------HHHHHHHHHHH
Confidence 2110 00 000223444555667788888888888888777766543 16777666544
Q ss_pred H-----HhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhc
Q 042477 159 G-----VCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKL 233 (478)
Q Consensus 159 ~-----~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
. .++|..++|.+.+.........+..+. .++..++.++.+.+....+++.+++++ +.+..+
T Consensus 154 ~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~-~~~~~~------------ 219 (448)
T PRK09848 154 AASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVA-QPSLKI------------ 219 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCcc-CCCHHH------------
Confidence 3 345566666665543221111111111 111122222222222211211111100 000000
Q ss_pred ccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhh
Q 042477 234 KNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQ 313 (478)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (478)
.+ ++ +.+.|.+.... +...+.+..+.........+
T Consensus 220 ------------------------------------~~-----~~-l~~n~~f~~~~---~~~~~~~~~~~~~~~~~~~~ 254 (448)
T PRK09848 220 ------------------------------------SL-----QT-LKRNRPLFMLC---IGALCVLISTFAVSASSLFY 254 (448)
T ss_pred ------------------------------------HH-----HH-HhCCchHHHHH---HHHHHHHHHHHHHhhhheee
Confidence 00 00 11111121111 11111111111111111111
Q ss_pred hccccccCCCccccCchhhcchh-HHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 042477 314 GMAMKRNIGSRFKIPPATLQSAI-TVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVET 392 (478)
Q Consensus 314 ~~~~~~~lg~~~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 392 (478)
....++. ......+...+ .+..++.. ++.+|+.+ +.++++.+.+|.++..++.+...+.
T Consensus 255 ---~~~~~g~--~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~-----r~g~~~~~~~g~~~~~i~~~~~~~~-- 314 (448)
T PRK09848 255 ---VRYVLND--TGLFTVLVLVQNLVGTVASA--------PLVPGMVA-----RIGKKNTFLIGALLGTCGYLLFFWV-- 314 (448)
T ss_pred ---EeeecCC--hHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-----HhCcHHHHHHHHHHHHHHHHHHHHc--
Confidence 1111111 10001111111 11122222 33333333 4555677788888877776655432
Q ss_pred HHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCch-------hHHHHHHHHHHHHhHHHHHHHHHHH
Q 042477 393 KRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVR-------MRTMGFALYTSVFGVGSFLSALLIS 465 (478)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~g~~~~~~~~g~~lg~~i~~ 465 (478)
...+.+...+..++.++|++...+...+...+..|++ .+|.++|++++.+.+|..+++.+.+
T Consensus 315 -----------~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 315 -----------SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556666778899999999999999999988865 4699999999999999999999998
Q ss_pred Hhhhcccc
Q 042477 466 VIEFFTSS 473 (478)
Q Consensus 466 ~~~~~~~~ 473 (478)
.+-+..|-
T Consensus 384 ~~l~~~G~ 391 (448)
T PRK09848 384 FILGLSGY 391 (448)
T ss_pred HHHHHcCC
Confidence 87766664
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=152.60 Aligned_cols=352 Identities=13% Similarity=0.063 Sum_probs=230.9
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
..|.-+.+.+.+.+++++++|+|+.|.+++.++..+...+..++-|.+.||+ |.|++...+.++..+-.+...++...
T Consensus 25 v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~a~~~- 102 (417)
T COG2223 25 VGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAFAVTY- 102 (417)
T ss_pred HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHHccC-
Confidence 3455566777899999999999999999999999999999999999999996 99999999999999999999888542
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.+.+.+++.+.+.|++ |+......+.++.++|+++ +|.+++++. ..|+|.
T Consensus 103 --------~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~--------------------qG~AlGI~g-~GN~G~ 152 (417)
T COG2223 103 --------PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK--------------------QGLALGIAG-AGNLGV 152 (417)
T ss_pred --------CchHHHHHHHHHHhcc-cceehcccccccccCChhh--------------------hhHHHHHhc-cccccH
Confidence 3447899999999988 4556788889999999988 899999999 999999
Q ss_pred hHHhhhhhhhccccc---hhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCC
Q 042477 165 LLGITLMSYIQDTFG---WVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISP 241 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (478)
.+...+++.+....+ |+....+..+.+++..+..++..+..++..+.. ++.
T Consensus 153 av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~----~~~---------------------- 206 (417)
T COG2223 153 AVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV----KPQ---------------------- 206 (417)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc----ccc----------------------
Confidence 999999999988888 999888888877776666666554332211111 000
Q ss_pred CCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccC
Q 042477 242 IDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNI 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (478)
.. ...++ +..+++++++..+....--.++.+ ...+ +.....+.
T Consensus 207 -----------------------------~~-~~~~~-v~~~~~~W~lsllY~~tFG~Fvgf---s~~l---~~~~~~~f 249 (417)
T COG2223 207 -----------------------------LP-AQLKA-VFSNKDTWLLSLLYFATFGGFVGF---SAYL---PMYLVTQF 249 (417)
T ss_pred -----------------------------ch-hHHHH-HhcCcchHHHHHHHHHHHHHHHHH---HHHH---HHHHHHhc
Confidence 00 00011 222333333322222111111111 1111 11222222
Q ss_pred CCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 042477 322 GSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQA 401 (478)
Q Consensus 322 g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (478)
+- .....+.+.. ..|+.+.+.-|+.+++.+ |.+..|.+.+.+..++++.......... .
T Consensus 250 g~-~~~~Ag~~a~--------~f~~~g~l~Rp~GG~LsD-----R~Gg~rv~~~~f~~~~~~~~~l~~~~~~------~- 308 (417)
T COG2223 250 GL-SPVTAGLIAF--------LFPLIGALARPLGGWLSD-----RIGGRRVTLAVFVGMALAAALLSLFLTG------F- 308 (417)
T ss_pred CC-ChhhHHHHHH--------HHHHHHHHHHhccchhhh-----hccchhHHHHHHHHHHHHHHHHHccccc------c-
Confidence 21 1122233333 334444444555555555 6777777778788888877776654210 0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccC
Q 042477 402 EAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSR 474 (478)
Q Consensus 402 ~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~~ 474 (478)
....+.+..+..++.+++..++-+...+..+..+.|+ +.|...|+......+|++.-|...+...+.+++.
T Consensus 309 -~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~ 379 (417)
T COG2223 309 -GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY 379 (417)
T ss_pred -ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccH
Confidence 0012223333333333333334344444455555555 5889999999999999999999999998888853
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-15 Score=152.04 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=119.4
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc---cchhHH-HHHHHHHHHHhhHHhhhc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY---WDRHST-ILAFSFIYVLGLMALTST 80 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Gr~~~-i~~~~~~~~ig~~l~~~~ 80 (478)
..+.+..+..+++.|+++.+|+++.++|.+..+..+...+..|+.|+++||. +||||. ++.+.....++..++...
T Consensus 21 ~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~ 100 (444)
T PRK09669 21 CNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT 100 (444)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC
Confidence 3444566677899999999999999999999999999999999999999992 388555 556666666666554433
Q ss_pred ccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 81 AFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
|... .......+++..++.+.+.........++.+|..++++ +|.+..++.....
T Consensus 101 ---p~~~---~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-------------------eR~~l~~~r~~~~ 155 (444)
T PRK09669 101 ---PDFG---ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-------------------ERHSLQSWRFALS 155 (444)
T ss_pred ---CCCC---cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-------------------HHHHHHHHHHHHH
Confidence 1110 01334566666667777777788888999999875433 1889999988888
Q ss_pred hhhhhHHhhhhhhhcc-------ccchhHHHHHHHHHHHHHHHH
Q 042477 161 CSGSLLGITLMSYIQD-------TFGWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~-------~~g~~~~f~~~~~~~~~~~~~ 197 (478)
++|..+++.+...+.. ..+|+..+.+.+++.+++.++
T Consensus 156 ~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 156 FIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 9988888765433221 346777776666555444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=152.74 Aligned_cols=360 Identities=13% Similarity=0.086 Sum_probs=205.2
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhh----hccchhH-HHHHHHHHHHHhhHHh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLAD----SYWDRHS-TILAFSFIYVLGLMAL 77 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Gr~~-~i~~~~~~~~ig~~l~ 77 (478)
+...+.+..+..+++.|+++.+|+++..+|.+..+.-+...+..|+.|+++| |+ |||| -++.+....+++..++
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~ll 94 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLFLL 94 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHHHH
Confidence 4455667777888999999999999999999999999999999999999999 64 9855 5666777777776666
Q ss_pred hhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH
Q 042477 78 TSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY 157 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 157 (478)
... |.. +.+.....+++..++.+++.........++..|..++++ +|.+..++..
T Consensus 95 f~~---p~~---~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-------------------eR~~l~~~~~ 149 (473)
T PRK10429 95 FSA---HLF---EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-------------------EREQLVPYPR 149 (473)
T ss_pred HcC---CCC---CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-------------------HHHHHHHHHH
Confidence 432 110 000124455555666788888889999999999885443 1899999877
Q ss_pred HHHhhhhhHHhhhhhhhcc-------ccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCcc---ccCChhHHHHHHHH
Q 042477 158 FGVCSGSLLGITLMSYIQD-------TFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEA---LKNKPFMSIVQAIK 227 (478)
Q Consensus 158 ~~~~~G~~ig~~~~~~i~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 227 (478)
...++|+.+++.+...+.. ..+|+....+.++..+++.++.++..++.. .+++.+ +++.++.+.
T Consensus 150 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~----- 223 (473)
T PRK10429 150 FFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSAEGSHLTLKDI----- 223 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-CccccccccccCCCHHHH-----
Confidence 7778887666555433211 135665555555544444333333222110 001000 000000000
Q ss_pred HHHHhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 042477 228 VAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPV 307 (478)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (478)
+ +. +.+.|.+...+.................
T Consensus 224 -------------------------------------------~-----~~-~~~n~~~~~ll~~~~~~~~~~~~~~~~~ 254 (473)
T PRK10429 224 -------------------------------------------V-----AL-IYKNDQLSCLLGMALAYNIASNIINGFA 254 (473)
T ss_pred -------------------------------------------H-----HH-HhcCHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 0 00 1111222222211111111111111111
Q ss_pred chhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 042477 308 TFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIA 387 (478)
Q Consensus 308 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 387 (478)
.++. ... .+. ....+.+.....+..++..++..++ .+ +.++++.+.++..+..++.+..
T Consensus 255 ~y~~---~y~---~~~--~~~~~~~~~~~~i~~ii~~~~~~~l----~~---------r~gkk~~~~~~~~~~~~~~~~~ 313 (473)
T PRK10429 255 IYYF---TYV---IGD--ADLFPYYLSYAGAANLVTLILFPRL----VK---------SLSRRILWAGASIFPVLSCGVL 313 (473)
T ss_pred eeEE---EEE---CCC--HHHHHHHHHHHHHHHHHHHHHHHHH----HH---------HcCcHHHHHHHHHHHHHHHHHH
Confidence 1111 111 110 1111222233333444444444332 22 3444556666666555554443
Q ss_pred HHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC-------chhHHHHHHHHHHHHhHHHHHH
Q 042477 388 AAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVP-------VRMRTMGFALYTSVFGVGSFLS 460 (478)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~lg 460 (478)
..... . .+.+.+.+++..++.+++.+...+...++..|.++ ++..|...|++.+...+|..++
T Consensus 314 ~~~~~--~--------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~ 383 (473)
T PRK10429 314 LLMGL--A--------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFA 383 (473)
T ss_pred HHHhc--c--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHH
Confidence 22100 0 02234555666677889999888888889988877 4446779999999999999999
Q ss_pred HHHHHHhhhccccC
Q 042477 461 ALLISVIEFFTSSR 474 (478)
Q Consensus 461 ~~i~~~~~~~~~~~ 474 (478)
+.+.+.+-+..|-+
T Consensus 384 ~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 384 AFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999887777753
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=151.78 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=138.1
Q ss_pred hcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHH
Q 042477 23 VMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPL 102 (478)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (478)
.++-.+++.|++.+...+.+.+..++.|.+.|| +|+|-.+++|+++....++++++. .++++++++|
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg------------~sy~~l~vAR 166 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFG------------NSYPMLFVAR 166 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHc------------chhHHHHHHH
Confidence 456677889999999999999999999999999 599999999999999999999999 7899999999
Q ss_pred HHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccchhH
Q 042477 103 SLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVI 182 (478)
Q Consensus 103 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~ 182 (478)
.++|+|.+....+..++++|.+|+++ +|+++++..--...+|-++||.++|.+-+..|++.
T Consensus 167 ~LQgvgsA~~~tsglamlAd~f~~d~-------------------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~a 227 (464)
T KOG3764|consen 167 SLQGVGSAFADTSGLAMLADVFPEDN-------------------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSA 227 (464)
T ss_pred HHhhhhHHHHHhhhHHHHHHHcccch-------------------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcC
Confidence 99999999999999999999999876 28999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 042477 183 GFAIPTIAMLTSTAFFSFASRF 204 (478)
Q Consensus 183 ~f~~~~~~~~~~~~~~~~~~~~ 204 (478)
+|++.+++.++-..+.++..+.
T Consensus 228 PFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 228 PFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred cHHHHHHHHHHHHHHHHheeCc
Confidence 9999999888877776665543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-14 Score=143.60 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=125.1
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc----cchhH-HHHHHHHHHHHhhHHhhhccc
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY----WDRHS-TILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Gr~~-~i~~~~~~~~ig~~l~~~~~~ 82 (478)
.+.-....+|.|++ +.|++.++.|++...... .+..++.|+++||+ +|||| .+..+.++.+++..++.+...
T Consensus 14 ~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~ 90 (402)
T PRK11902 14 PLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP 90 (402)
T ss_pred hHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 34445567899996 569999999999666554 69999999999994 17766 688888888777777766521
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
..+.+.+++..++.++..+...|...+++.|.+|+++ |+++.++...+.++
T Consensus 91 ---------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--------------------r~~~~~~~~~g~~~ 141 (402)
T PRK11902 91 ---------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE--------------------RGAGAAVKVLGYRL 141 (402)
T ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--------------------hhHHHHHHHHHHHH
Confidence 0346666777677788888889999999999999877 99999999999999
Q ss_pred hhhHHhhhhhhhccc-cchhHHHHHHHHHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDT-FGWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 163 G~~ig~~~~~~i~~~-~g~~~~f~~~~~~~~~~~~~ 197 (478)
|..+++.+++++.+. .|||..|++.++..+++.+.
T Consensus 142 g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 142 AMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 999999998888775 59999999888766555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=148.10 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=136.0
Q ss_pred hHHHHHHhhhhcCCChhh-HhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCC
Q 042477 13 ASNLVTYLTDVMKMSNSS-AAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANT 91 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~-~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~ 91 (478)
.+++..|+.+++|+++.+ .|.+.+.+..++.++.+++|+++||+ |-|+++..+.+...+..+++.++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345788999999999999 99999999999999999999999996 99999999999999999999998
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 92 TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 92 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
.+...+.+.|++.|++.|... +...++..++|+++ |+++.+++..+.++|.+++++++
T Consensus 113 -~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE--------------------R~ratsi~~sg~~vG~~Ia~~L~ 170 (511)
T TIGR00806 113 -TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR--------------------YQRAAAYSRAAVLLGVFLSSVLG 170 (511)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998 99999999999888 99999999999999999999999
Q ss_pred hhhccccchhHHHH---HHHHHHHHHHHHHHhh
Q 042477 172 SYIQDTFGWVIGFA---IPTIAMLTSTAFFSFA 201 (478)
Q Consensus 172 ~~i~~~~g~~~~f~---~~~~~~~~~~~~~~~~ 201 (478)
+++ ..+||+.-+. ++.....+++++.++.
T Consensus 171 qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 171 QLL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 985 4679987554 4444455555554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=153.83 Aligned_cols=358 Identities=16% Similarity=0.154 Sum_probs=227.1
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhh----hccchhHHHH-HHHHHHHHhhHHhhh
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLAD----SYWDRHSTIL-AFSFIYVLGLMALTS 79 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Gr~~~i~-~~~~~~~ig~~l~~~ 79 (478)
..+.+.....++..|+++.+|+++...+.+.....+...+..|+.|+++| |+ ||||-.+ .|....+++..++..
T Consensus 13 ~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~llf~ 91 (428)
T PF13347_consen 13 YNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLLFS 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHhhc
Confidence 34555556678899999999999999999999999999999999999999 75 9877644 677777777777664
Q ss_pred cccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHH
Q 042477 80 TAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFG 159 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (478)
... .... ......++.+..++..++......+..++..|..++++ +|.+..++....
T Consensus 92 ~~p-~~~~---~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-------------------~R~~l~~~~~~~ 148 (428)
T PF13347_consen 92 PPP-AGLS---FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-------------------ERTRLSSWRMIF 148 (428)
T ss_pred ccc-chhh---hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-------------------hhhhHHHHHHHH
Confidence 411 0000 00234455777777899999999999999999988654 189999998888
Q ss_pred HhhhhhHHhhhhhhhccc-------cchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHh
Q 042477 160 VCSGSLLGITLMSYIQDT-------FGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASK 232 (478)
Q Consensus 160 ~~~G~~ig~~~~~~i~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (478)
.++|.++...+.+.+.+. .+|++...+.+++.+++.++..+..++ ++++++++ +
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~---~--------------- 209 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ---E--------------- 209 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee-cccccccc---c---------------
Confidence 888887666665554322 168888777777666666655554443 11111110 0
Q ss_pred cccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhh
Q 042477 233 LKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTK 312 (478)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (478)
+..++.+ .++.. .+|+ ...+.+ ....+.+..+....+...+
T Consensus 210 ---------------~~~~~~~---------------~~~~~-----~~nr-~~~~l~---~~~~~~~~~~~~~~~~~~y 250 (428)
T PF13347_consen 210 ---------------KKISLRD---------------SLRSL-----FRNR-PFRILL---LAFFLQWLAFALMNTFLPY 250 (428)
T ss_pred ---------------ccccccc---------------chhhh-----cccc-hHHHHH---HHHHHHHhhhhhhhhHHHH
Confidence 0000000 01000 1121 122111 1112222222222222222
Q ss_pred hhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 042477 313 QGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVET 392 (478)
Q Consensus 313 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 392 (478)
+....- +. +...+.+.....+..++..|+..++ .+ +.++++.+..+.++.+++.++..+..
T Consensus 251 ~~~~vl---~~--~~~~~~~~~~~~~~~~v~~~~~~~l----~~---------r~gk~~~~~~~~~~~~~~~~~~~~~~- 311 (428)
T PF13347_consen 251 YFTYVL---GN--EGLISIFMLIFFVASIVGSPLWGRL----SK---------RFGKKKVYIIGLLLAALGFLLLFFLG- 311 (428)
T ss_pred HHHHHh---cC--chhhHHHHHHHHHHHHHHHHHHHHH----HH---------HccceeehhhhHHHHHHHHHHHHHHH-
Confidence 221111 11 1111222223333344444444332 23 34555678888888888888776652
Q ss_pred HHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCc-------hhHHHHHHHHHHHHhHHHHHHHHHHH
Q 042477 393 KRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPV-------RMRTMGFALYTSVFGVGSFLSALLIS 465 (478)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~~~~g~~lg~~i~~ 465 (478)
..+.+++.+..++.+++.+...+...++..|..+. +..|..+|++++...++..++..+.+
T Consensus 312 ------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 312 ------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred ------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 14678888899999999999988888888888873 45699999999999999999999999
Q ss_pred HhhhccccCc
Q 042477 466 VIEFFTSSRA 475 (478)
Q Consensus 466 ~~~~~~~~~~ 475 (478)
.+-+..|-++
T Consensus 380 ~~l~~~Gy~~ 389 (428)
T PF13347_consen 380 LLLALVGYDA 389 (428)
T ss_pred HHHHHhCcCC
Confidence 8888877543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-14 Score=141.85 Aligned_cols=167 Identities=14% Similarity=-0.012 Sum_probs=110.2
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhH--HHhhHHHHhhhhhhh-hHHhhhccchhHHHHHHHHHH-HHhhHHhhhc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKT--VSSWNGLTSMLPLLL-APLADSYWDRHSTILAFSFIY-VLGLMALTST 80 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~-G~laD~~~Gr~~~i~~~~~~~-~ig~~l~~~~ 80 (478)
+.+.+.-+.+.+|.|++ +.|.++++.|.. .+.......+.+++. ++.+||+ ||||..++.+.+. ......+...
T Consensus 13 ~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~~~~~~~~~~ 90 (390)
T TIGR02718 13 QGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVSACLASLALV 90 (390)
T ss_pred HHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHHHHHHHHHcC
Confidence 34455556678888885 679999999997 455667776677666 6689996 9999976665332 2122222211
Q ss_pred ccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 81 AFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
.. . ......++....+.++..+..-+...++..|..++++ ++...+....+.
T Consensus 91 ~~--~------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~--------------------~~~~~~~~~~g~ 142 (390)
T TIGR02718 91 GP--D------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT--------------------LAKGNAVQIAGV 142 (390)
T ss_pred Cc--c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh--------------------hhHHHHHHHHHH
Confidence 10 0 0222333444444555556666666666666655544 677777777788
Q ss_pred hhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 161 CSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
.+|..+|+...+++.+.+||+..|++.+++.++..+..++.
T Consensus 143 ~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 143 MIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999998888888888999999999887766655554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-14 Score=147.36 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=121.2
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
....++.+++|-+ ....|+.+.+.+...+..++.|.++|.+ |||..++.+.++..+|.++.+-+ ++
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------~~ 130 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------QN 130 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC------------Cc
Confidence 3446888888864 5678899999999999999999999996 99999999999999999999988 88
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
...++.+-.+.|+|.|... .....++|..|.+. |.....+.....-+....++.++..+
T Consensus 131 ~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~--------------------R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW--------------------RGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch--------------------hhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 9999999999999977654 45666899998776 77666665554444445566666666
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 175 QDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 175 ~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
..+.+|||.|++.++...+++++.++
T Consensus 190 ~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 190 AAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 66679999999998877776555433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-14 Score=149.20 Aligned_cols=140 Identities=15% Similarity=0.069 Sum_probs=126.9
Q ss_pred hhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHH
Q 042477 22 DVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLP 101 (478)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (478)
+..+.+........+.+.++..+++++.|+++|| +|||++++.++++..++.++.+++ .++..+++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~ 177 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIF 177 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHH
Confidence 4566677788899999999999999999999999 599999999999999999999999 899999999
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccchh
Q 042477 102 LSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWV 181 (478)
Q Consensus 102 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~ 181 (478)
|++.|++.++...+...+++|.+++++ |+.+.++ ......++.+++.+++++.. +||
T Consensus 178 Rfl~G~~~~~~~~~~~~~~~E~~~~~~--------------------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr 234 (521)
T KOG0255|consen 178 RFLSGFFGSGPLTVGFGLVAEIVSPKQ--------------------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWR 234 (521)
T ss_pred HHHHHhhccchhHHhHhhheeecCcch--------------------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHH
Confidence 999999999999999999999999988 9999999 88888899999999998877 999
Q ss_pred HHHHHHHHHHHHHHHH
Q 042477 182 IGFAIPTIAMLTSTAF 197 (478)
Q Consensus 182 ~~f~~~~~~~~~~~~~ 197 (478)
+.+++..+...+..++
T Consensus 235 ~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 235 WLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766665555
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-14 Score=146.96 Aligned_cols=373 Identities=11% Similarity=0.060 Sum_probs=213.8
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccc-----hhHHHHHHHHHHH-HhhHHhh
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWD-----RHSTILAFSFIYV-LGLMALT 78 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----r~~~i~~~~~~~~-ig~~l~~ 78 (478)
+.+. +.+...+..++++++|.++++.+...+...+...+-++ .|.++||+ + ||+.+.++.++.. ++...++
T Consensus 38 qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~~~~~l~ 114 (468)
T TIGR00788 38 KGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAILYGLLP 114 (468)
T ss_pred hhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHHHHHhcc
Confidence 3444 55666788888889999999999998888888888666 99999996 8 7777777776653 3322222
Q ss_pred hcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 79 STAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
.. ++......+.+++.+++.+..-+...++..|..+ +++. .++...++.|.
T Consensus 115 ~~-----------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~-----------------~~~~~~s~~~~ 165 (468)
T TIGR00788 115 GK-----------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS-----------------AGPSLVSWMWG 165 (468)
T ss_pred cc-----------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC-----------------cCCCeeeHHHH
Confidence 21 0223344457888999999999999999999998 4321 15667778888
Q ss_pred HHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCC
Q 042477 159 GVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKA 238 (478)
Q Consensus 159 ~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (478)
..++|.++|+.++|++.+.++|+..|++.+++.++..+...+.+++.+...|+. +...... +....
T Consensus 166 ~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~----~~~~~~~------~~~~~---- 231 (468)
T TIGR00788 166 ASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRI----GTYLEMN------MALLT---- 231 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccc----cccchhh------hhhhh----
Confidence 889999999999999999899999999888777666443333322100011111 0000000 00000
Q ss_pred CCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhcccc
Q 042477 239 ISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMK 318 (478)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (478)
. . ..+.. .+.++. ... .-.++.+.+.+ ++..+.+.........+... ..
T Consensus 232 -----~---~---~~~~~-----------~~~~~~--l~~-~l~~~~i~~~l---~fifl~~~~~~~~~~~~f~~---~~ 280 (468)
T TIGR00788 232 -----L---G---VLANV-----------KVQILG--LRG-AIQLLEIAKPL---IFIFLSYANLPGASGSVFCA---TT 280 (468)
T ss_pred -----h---h---HHHHH-----------HHHHHH--HHH-HHhcHHHHHHH---HHHHHHHhhcCCCCceeEEE---Ec
Confidence 0 0 00000 000000 000 00011111111 11111011111111111100 01
Q ss_pred ccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042477 319 RNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRS 398 (478)
Q Consensus 319 ~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 398 (478)
..+|. -....+.......+..++...+.+ |..+ +.+.++.+.++.++.+++.+....... +..
T Consensus 281 ~~lG~-s~~~~G~~~~~~~v~~i~g~~~~~--------~~~~-----~~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~-- 343 (468)
T TIGR00788 281 QCLPG-GPSFSGMSKVVGNLGSLCGVGGYD--------RFLK-----TFPYRLLFGVTTLLYTLSSLFDLILVK-RWN-- 343 (468)
T ss_pred ccCCC-CcchhhhHHHHHHHHHHHHHHHHH--------HHHh-----hCCHHHHHHHHHHHHHHHHhCceeeee-ccc--
Confidence 11221 111223333333344444444433 3322 466666677777777776544321100 000
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 399 KQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 399 ~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
... .....+++....++.+++.++...+...++.+.+|++.+|+..++.+...++|+.+++.+.+.+.+.-|.
T Consensus 344 -~~~-gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~ 416 (468)
T TIGR00788 344 -LAF-GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGI 416 (468)
T ss_pred -ccc-CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 000 0012334455567778888888888899999999999999999999999999999999999999887773
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=162.98 Aligned_cols=173 Identities=19% Similarity=0.190 Sum_probs=139.4
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc----
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA---- 83 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~---- 83 (478)
.+.++.......+.+.++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.+++++..+|.++.++....
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~alphf~~~~y 125 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLLSLPHFLSGRY 125 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHHhChHHhcCCc
Confidence 3445666667778888999999999999999999999999999999996 99999999999999999998765200
Q ss_pred ----------------cccCC-----------------CCC--ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 042477 84 ----------------WAESP-----------------ANT--TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNN 128 (478)
Q Consensus 84 ----------------~~~~~-----------------~~~--~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 128 (478)
...|. ..+ ...+.+++++|+++|+|.+...+...+++.|.+|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~ 205 (633)
T TIGR00805 126 SYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN 205 (633)
T ss_pred cccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc
Confidence 00110 000 0135678899999999999999999999999999887
Q ss_pred CCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcccc----------------------chhHHHHH
Q 042477 129 DDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTF----------------------GWVIGFAI 186 (478)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~----------------------g~~~~f~~ 186 (478)
|+..+++++....+|.++|+++++++.+.+ +||..|++
T Consensus 206 --------------------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli 265 (633)
T TIGR00805 206 --------------------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLI 265 (633)
T ss_pred --------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999876432 38888988
Q ss_pred HHHHHHHHHHHHHhh
Q 042477 187 PTIAMLTSTAFFSFA 201 (478)
Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (478)
.+++.++..+.+++.
T Consensus 266 ~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 266 CGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHhC
Confidence 887666655444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-12 Score=133.98 Aligned_cols=344 Identities=15% Similarity=0.163 Sum_probs=188.9
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
+.+....++++.|++ +.|++..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++..+...+....
T Consensus 16 ~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~------ 88 (400)
T PF03825_consen 16 FAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS------ 88 (400)
T ss_pred HHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh------
Confidence 344556677888885 6889999999999999999999999999999997457777777777766665555555
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
++++.+++..++..+......|...++.-+...+++ .++. |-|..+ .+|..+
T Consensus 89 ------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~-------------~~YG---~iRlwG------SiGf~~ 140 (400)
T PF03825_consen 89 ------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG-------------KDYG---RIRLWG------SIGFIV 140 (400)
T ss_pred ------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc-------------CCCC---cchhhh------hHHHHH
Confidence 566767777777777777777877777777665322 0111 334443 344443
Q ss_pred Hhhh-hhhhcccc---chhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 167 GITL-MSYIQDTF---GWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 167 g~~~-~~~i~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
+... ++.+.... +....+++.+...++..... +..|+. +++++++++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~---~~~~~~~~~~------------------------ 192 (400)
T PF03825_consen 141 AALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKT---PPKRSAKESV------------------------ 192 (400)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCC---ccccccCCCc------------------------
Confidence 3221 12222211 22234555444332222211 222221 1111000000
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
+ +..+++ ..+-.++++...-.+..+....... .++.+.+.+ +++ +|
T Consensus 193 -----~-------------------~~~~~~--~~~llk~~~~~~Fll~~~l~~~~~~-~~~~f~~~y------l~~-~g 238 (400)
T PF03825_consen 193 -----K-------------------KLLGLD--ALKLLKNPRFLVFLLAAFLIGISHA-AYYTFFSIY------LQE-LG 238 (400)
T ss_pred -----c-------------------cccchH--HHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHH------HHH-cc
Confidence 0 000000 0000111111111111111111111 121111111 111 11
Q ss_pred CccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 042477 323 SRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
+......+...++..+.-+.+..+ .+|..+ |.+.++.+.++.+..++=+.+.+...
T Consensus 239 g~~~~~~g~~~~l~~~aEi~~f~~--------~~~~~~-----r~g~~~ll~~a~~~~~vR~~l~a~~~----------- 294 (400)
T PF03825_consen 239 GYSGSTIGILWALGVVAEIPFFFF--------SGRFLK-----RFGIKWLLLLALVAYAVRWLLYAYFS----------- 294 (400)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH--------HHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 000111222223333333333333 334433 56677778777777777666665541
Q ss_pred CccchHHH----HHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHH-HhHHHHHHHHHHHHhhhccccC
Q 042477 403 AKPITIFW----LLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSV-FGVGSFLSALLISVIEFFTSSR 474 (478)
Q Consensus 403 ~~~~~~~~----li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~~g~~lg~~i~~~~~~~~~~~ 474 (478)
.+.++ +.+.-++.|+..++...+...|+.+.+|++.|++++++++.. .++|+.+|+.+.|.+.+.-+.+
T Consensus 295 ---~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 295 ---DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred ---CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 12222 223345799999999999999999999999999999998764 6899999999999998876543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-12 Score=133.73 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=123.8
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc---cchhHHHH-HHHHHHHHhhHHhh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY---WDRHSTIL-AFSFIYVLGLMALT 78 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Gr~~~i~-~~~~~~~ig~~l~~ 78 (478)
+...+.+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++||. +||||..+ ++....+++..++.
T Consensus 19 ~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf 98 (460)
T PRK11462 19 AASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY 98 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH
Confidence 344566666677899999999999999999999999999999999999999972 59887655 56567777766655
Q ss_pred hcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 79 STAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
.. |... .......+.+.-++..++.........++.+|..++.+ +|.+..++...
T Consensus 99 ~~---p~~s---~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-------------------eRt~l~s~r~~ 153 (460)
T PRK11462 99 ST---PDLS---MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-------------------QRISLQSWRFV 153 (460)
T ss_pred hC---CCCC---cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-------------------HHHHHHHHHHH
Confidence 33 1110 01224456666667788999999999999999987554 29999999999
Q ss_pred HHhhhhhHHhhhhhhhccc-------cchhHHHHHHHHHHHHHHHHH
Q 042477 159 GVCSGSLLGITLMSYIQDT-------FGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 159 ~~~~G~~ig~~~~~~i~~~-------~g~~~~f~~~~~~~~~~~~~~ 198 (478)
..++|..+++.+...+... .+|+....+.+++.+++..+.
T Consensus 154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999988887765443222 356665555555444444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-13 Score=131.71 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=117.3
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
..+.+.+++.++.+..+++.+-..+..+..+++++.|++.+|+ |+|+.++.|+.++++|+.+..=++. ..
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~---------~~ 102 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS---------SK 102 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh---------hh
Confidence 4577888899999999999999999999999999999999996 9999999999999999999864432 16
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
++.++.++.++.+.|.|...+..++++++..|+++ -.+-++..+....+|..+||.++++
T Consensus 103 ~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~--------------------a~~rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPES--------------------AAFRLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh--------------------HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 78899999999999999999999999999999865 4566667777788999999999987
Q ss_pred hcc
Q 042477 174 IQD 176 (478)
Q Consensus 174 i~~ 176 (478)
+..
T Consensus 163 lil 165 (422)
T COG0738 163 LIL 165 (422)
T ss_pred HHH
Confidence 655
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-13 Score=141.54 Aligned_cols=378 Identities=16% Similarity=0.121 Sum_probs=231.8
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.+...++++++.+.++++|+.++......+..|+.+.+.||+ |.|.+.++|.++..+|.++..++ ++
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~lssF~------------~~ 133 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLSSFA------------TS 133 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHH------------hh
Confidence 355667789999999999999999999999999999999997 99999999999999999999999 77
Q ss_pred hHHHHHHHHH-HHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 95 SSFLFLPLSL-ISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 95 ~~~~~~~~~l-~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
.+.+++.--+ .|+|.|........+++..|+++ |+.+.++-..+..+|.++-|.+..+
T Consensus 134 i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk---------------------R~lA~Gia~~GsG~G~~~~~~l~~~ 192 (509)
T KOG2504|consen 134 LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK---------------------RALATGIAVSGTGVGTVVFPPLLKY 192 (509)
T ss_pred HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH---------------------HHHHHhhhhccCCcceeeHHHHHHH
Confidence 8877766555 68999999988888899887743 8899999888888988888888889
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCC-CCCCCCccccccc
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAI-SPIDKSDAMELEL 252 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 252 (478)
+.+.+|||..+++-..+.+-+.+.....+|.....+|+++ + .... ....... ....+. ....
T Consensus 193 l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~-~--~~~~-----------~~~~~~~~~~~~~~---~~~~ 255 (509)
T KOG2504|consen 193 LLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE-K--DLRN-----------SAASVESTPKPVEL---RISE 255 (509)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh-h--hhcc-----------cccccccccccccc---cccc
Confidence 9999999999998888777666666666553322222210 0 0000 0000000 000000 0000
Q ss_pred cccccc----cCCCCCcccccCCCCCCchhhHH-HHHHHHHH---HHHHHHHHHHHHHhccCcchhhhhhccccccCCCc
Q 042477 253 QEKPLC----CNDQNKELDDELENPKNVKHAVQ-NVKILLRL---LPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSR 324 (478)
Q Consensus 253 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 324 (478)
.+.... ..+.........|.....+.... ..+.+++. +.+.....+....+......+..+.. ..|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~----~~g~- 330 (509)
T KOG2504|consen 256 RDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK----SLGL- 330 (509)
T ss_pred CCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCC-
Confidence 000000 00000000000111000000000 00111111 01111111111111111111221111 1111
Q ss_pred cccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 042477 325 FKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAK 404 (478)
Q Consensus 325 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (478)
-+........+..+..++..++...+.+ + + ..+......++++..+++..+..+.
T Consensus 331 ~~~~aa~l~Siigi~~i~gRi~~G~laD----~------~-~~~~~~~~~~~ll~~gl~~~~~p~~-------------- 385 (509)
T KOG2504|consen 331 SSNDAAFLLSIIGVSDIIGRIILGLLAD----K------P-GIRALVLFLLTLLIAGLARLFLPFA-------------- 385 (509)
T ss_pred ChhhhHHHHHHHHHhhhhhhhhhhhhcC----c------c-ccchHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 1222333333444444444444433311 1 1 2233444566677777766554443
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccC
Q 042477 405 PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSR 474 (478)
Q Consensus 405 ~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~~ 474 (478)
.+.+.++...+++|+..+.........+.+..+.+.-..+.|+..++.+++..+|+.+.+.+.+.+++.
T Consensus 386 -~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y 454 (509)
T KOG2504|consen 386 -TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY 454 (509)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence 356778888899999998888888789999999999999999999999999999999999998888864
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-18 Score=177.67 Aligned_cols=139 Identities=16% Similarity=0.199 Sum_probs=118.0
Q ss_pred hHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhc
Q 042477 30 SAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGL 109 (478)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~ 109 (478)
..++..+...++..++++++|+++||+ |||+++.++.++..+|.++..++... .+...+.++|+++|+|.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------NNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------ccccccccccccccccc
Confidence 467889999999999999999999996 99999999999999999999988210 17899999999999999
Q ss_pred cccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc---ccchhHHHHH
Q 042477 110 AGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD---TFGWVIGFAI 186 (478)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~---~~g~~~~f~~ 186 (478)
|+..+..+.++.|..|++. |++..++......+|..++..++..... ..+||..+.+
T Consensus 117 g~~~~~~~~~~~E~~~~~~--------------------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~ 176 (451)
T PF00083_consen 117 GGAYVVSPIYISEIAPPKH--------------------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIF 176 (451)
T ss_pred ccccccccccccccccccc--------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999887 9999999999999999988777654433 2459999888
Q ss_pred HHHHHHHHHHHH
Q 042477 187 PTIAMLTSTAFF 198 (478)
Q Consensus 187 ~~~~~~~~~~~~ 198 (478)
+.+..++..+..
T Consensus 177 ~~~~~l~~~~~~ 188 (451)
T PF00083_consen 177 GAIPSLLVLLLR 188 (451)
T ss_pred cccccccccccc
Confidence 877655544433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=130.44 Aligned_cols=349 Identities=11% Similarity=0.054 Sum_probs=190.4
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHH--HhhHHhhhccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYV--LGLMALTSTAFAW 84 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~--ig~~l~~~~~~~~ 84 (478)
+++-...++.+++++++.|++.++.|.+.++..+...+.+|+.|.++||+ |.||-++..+.+.. .+-....... |
T Consensus 21 f~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l~~pff~~v~~--p 97 (412)
T PF01306_consen 21 FIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLLFGPFFIYVFG--P 97 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHTCHHHHHHTHH--H
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 44555677899999999999999999999999999999999999999996 97776554433322 2322222110 0
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhcc----ccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLA----GYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
.-...+.++.++.++..+ ...|..-++..+.... .+--++..-...
T Consensus 98 --------ll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~----------------------~~feYG~~R~wG 147 (412)
T PF01306_consen 98 --------LLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR----------------------NGFEYGRARMWG 147 (412)
T ss_dssp --------HHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH----------------------HSS-HHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH----------------------hcCCcchHHHHh
Confidence 001122333333333333 3334444443333211 233444455557
Q ss_pred hhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCC
Q 042477 161 CSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAIS 240 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (478)
.+|.+++..++|++.+ .+-+..|++.....++..++....++..+++.+..
T Consensus 148 Sig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~---------------------------- 198 (412)
T PF01306_consen 148 SIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA---------------------------- 198 (412)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS----------------------------
T ss_pred hHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh----------------------------
Confidence 7888889899998875 45567777666544444444444332211110000
Q ss_pred CCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc-hhhhhhccccc
Q 042477 241 PIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVT-FFTKQGMAMKR 319 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (478)
+.. .+ +.+..+..+..+ +.+.|+++....+.......+..+.|+.. ++..+-...+.
T Consensus 199 --~~~---------~~----------~~~~~~~~~~~~-l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~ 256 (412)
T PF01306_consen 199 --DAL---------GA----------KKDKVSLKDVLS-LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQ 256 (412)
T ss_dssp --TTS---------SS----------------HHHHHH-HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred --ccc---------cc----------CCCCCcHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 000 00 000000000011 22233444433333333334444444433 33221111000
Q ss_pred cCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 042477 320 NIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSK 399 (478)
Q Consensus 320 ~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 399 (478)
. +.--+..++...+.-.+...+ .+++.+ |+++++.+.++.+++++=.+..++.
T Consensus 257 g-----~~~~G~l~s~~v~~E~~~m~~--------~p~li~-----rig~k~~Lllag~i~~iRi~~~~~~--------- 309 (412)
T PF01306_consen 257 G-----NQMYGYLWSVQVFLEALMMFF--------SPWLIN-----RIGAKNLLLLAGVIMAIRIIGSGFA--------- 309 (412)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHH--------HHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHT----------
T ss_pred C-----hhHHhHHHHHHHHHHHHHHHH--------HHHHHH-----hcChHhHHHHHHHHHHHHHHHHhhh---------
Confidence 0 001122222222222222222 223333 4666777777777777766666654
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHH-HHHHhHHHHHHHHHHHHhhhccc
Q 042477 400 QAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALY-TSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 400 ~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
.+++++++.=.+.++-..+......-|+.+..|++..++...+. ++..++|.++.+.+.|.+++..|
T Consensus 310 ------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G 377 (412)
T PF01306_consen 310 ------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG 377 (412)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence 46777888889999999999999999999999999999998884 79999999999999999887665
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-11 Score=117.66 Aligned_cols=328 Identities=13% Similarity=0.114 Sum_probs=216.6
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.+..-+++++|.|.+++|.+++.-.+...++++++.+++.|+ |.++.+..++++.++|.++=... +
T Consensus 33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~-------------~ 98 (395)
T COG2807 33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG-------------G 98 (395)
T ss_pred hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-------------c
Confidence 345678889999999999999999999999999999999996 99999999999999998887655 4
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
...++.+-.+.|.|.+..+...+.++-+.||++ .+..++.|..+.++|+.+++.+...+
T Consensus 99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~---------------------~~~mtglYs~sl~~~aaLaa~lavpl 157 (395)
T COG2807 99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR---------------------VGLMTGLYSTSLGAGAALAAALAVPL 157 (395)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc---------------------hhhHHhHHHHHHHHHHHHHhhhhhHH
Confidence 677888999999999999999999999999965 57899999999999999999999888
Q ss_pred cccc-chhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCcccccccc
Q 042477 175 QDTF-GWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQ 253 (478)
Q Consensus 175 ~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (478)
.++. ||+....+=+...+++.+.++.-.. +++.+.. +. + .++
T Consensus 158 a~~~~gW~~aL~~WAl~allAl~~WlPq~~--r~~~~~~----~~--------------~---------~~~-------- 200 (395)
T COG2807 158 AQHSGGWRGALGFWALLALLALLIWLPQAL--REQAASI----AT--------------K---------LVS-------- 200 (395)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHhhhcc--ccccccc----cc--------------c---------ccc--------
Confidence 7776 7999877666665566555443221 1111111 00 0 000
Q ss_pred ccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhc
Q 042477 254 EKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQ 333 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 333 (478)
...-|+.. ......+.+-.....++..+.+++..+..++ ++. ...+.+-
T Consensus 201 -------------~~~vw~~~---------~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G--~sa-------~~aG~ll 249 (395)
T COG2807 201 -------------VRKVWRSP---------LAWQVTLFMGLQSLLYYIVIGWLPAILIDRG--LSA-------AEAGSLL 249 (395)
T ss_pred -------------ccccccCc---------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCH-------HHhhhHH
Confidence 00123221 1111112223344556666666666554432 221 1222222
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHH
Q 042477 334 SAITVSIILLMPLYDTVLIPI-IQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLL 412 (478)
Q Consensus 334 ~~~~~~~~i~~~l~~~~~~~l-~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 412 (478)
.+..+..+.. .+..|+ .+|.. +.+........++.++..-..+.. ....++|
T Consensus 250 sl~~l~~~~~-----~ll~P~la~R~~--------n~r~~~~~~~~~~l~G~~G~~~~P------------~~~~~lw-- 302 (395)
T COG2807 250 SLMQLAQLPT-----ALLIPLLARRSK--------NQRPLVVLALLLMLVGLVGLLLAP------------GQLPILW-- 302 (395)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhc--------ccchHHHHHHHHHHHHHHHHHHhh------------hhHHHHH--
Confidence 2222222211 122332 33321 112233333444444443333321 1123333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCc-hhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccC
Q 042477 413 PEYVLLGISDIFTVVAMQEFFYNEVPV-RMRTMGFALYTSVFGVGSFLSALLISVIEFFTSSR 474 (478)
Q Consensus 413 ~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~~ 474 (478)
.+++|+|.+..+|....++...+++ +.-+.-+|+.+....+=...||.+.|.+.+.+||-
T Consensus 303 --~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 303 --ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred --HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 3788999999999999998887774 55566788888888888899999999999999873
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-12 Score=130.44 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=129.3
Q ss_pred hhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHH
Q 042477 20 LTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLF 99 (478)
Q Consensus 20 l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (478)
+++++++...+.+.+.+++.++..++.+++|++.||+ .-.+.+....+...+-.++.... .+.+.++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~i 138 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV------------HSFPGLI 138 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHH
Confidence 3467888888999999999999999999999999996 97777776666666655555555 7899999
Q ss_pred HHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh-----
Q 042477 100 LPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI----- 174 (478)
Q Consensus 100 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i----- 174 (478)
+.|++.|+..++..|+...+++.++.+++ |+.-+++++....+|+.+|.+++..+
T Consensus 139 alr~llGl~es~~wP~~~~~lg~wy~~~e--------------------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~ 198 (495)
T KOG2533|consen 139 ALRFLLGLFESGGWPGVVAILGNWYGKSE--------------------RGLRMGIWYASASLGNIFGGLIAYGVFKLNG 198 (495)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhcChhh--------------------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999988 99999999999999999999988765
Q ss_pred -ccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 042477 175 -QDTFGWVIGFAIPTIAMLTSTAFFSFASRF 204 (478)
Q Consensus 175 -~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 204 (478)
....|||+.|++.+++.+...++.++..|.
T Consensus 199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 345799999999998877776666555543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-11 Score=118.70 Aligned_cols=342 Identities=13% Similarity=0.092 Sum_probs=203.6
Q ss_pred hhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccc-----hhH-HHHHHHHHHHHhhHHhhhccccccc----CCCC
Q 042477 21 TDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWD-----RHS-TILAFSFIYVLGLMALTSTAFAWAE----SPAN 90 (478)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----r~~-~i~~~~~~~~ig~~l~~~~~~~~~~----~~~~ 90 (478)
..+++....-.+.+++.-.+... ..+..|+.||+. + ||- -+..|..+...|..+.+.+...=.. .+.+
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 35788888888888877666554 688999999996 5 443 3566777777766665544211000 0111
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhh
Q 042477 91 TTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 170 (478)
.........+...+.|+|.+...++..++++|..|+++ |.++.++.|...-+|..++..+
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~--------------------R~~~v~ivw~Mli~G~iv~ai~ 144 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER--------------------RPRVVAIVWVMLIVGIIVSAIV 144 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh--------------------hhhhHHHHHHHHHHHHHHHHHH
Confidence 11222344455666788888999999999999999888 9999999999999999999999
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHH----HHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCc
Q 042477 171 MSYIQDTFGWVIGFAIPTIAMLTSTAF----FSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSD 246 (478)
Q Consensus 171 ~~~i~~~~g~~~~f~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (478)
.+.+.+.++-.-...+.-...++..++ .+-..++.++.++..++++.++.+.
T Consensus 145 ~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a------------------------ 200 (403)
T PF03209_consen 145 FGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREA------------------------ 200 (403)
T ss_pred HHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHH------------------------
Confidence 998777776444333222222222222 2111122111111111111111111
Q ss_pred cccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccc
Q 042477 247 AMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFK 326 (478)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 326 (478)
|++...+ .+.++++ .+..+....+..... +.++. =|.-|+
T Consensus 201 ------------------------~~~~~~~---~~a~~f~------~fl~l~t~a~~~QD~--iLEPy-----gg~Vfg 240 (403)
T PF03209_consen 201 ------------------------WRQVWAS---PQARRFF------VFLFLGTLAFFMQDV--ILEPY-----GGEVFG 240 (403)
T ss_pred ------------------------HHHHHhC---CChhHHH------HHHHHHHHHHHhhHH--HcCCc-----hhHHcC
Confidence 1111000 1112221 111111111111111 11111 000133
Q ss_pred cCc---hhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 042477 327 IPP---ATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEA 403 (478)
Q Consensus 327 ~~~---~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (478)
+++ ..++.......++...+..++..| +.++++.-.+|...+.+++....+.-
T Consensus 241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~~------------~~~~~~~a~~G~~~~~~~f~lii~a~------------ 296 (403)
T PF03209_consen 241 MSVGETTRLTAFWGGGTLLGMLLAGFLLSR------------RLGKKRTAALGCLLGALAFALIILAG------------ 296 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCCchHHHHHHHHHHHHHHHHHHHHH------------
Confidence 333 334555566666666666554321 34445556677777777765554431
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 404 KPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 404 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
...+.+.+.+..+++|++.++......+...+.++++..|..+|.|...+.++..++..+.+.+.+...
T Consensus 297 ~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 297 PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567788889999999999999999999999999999999999999999999999888888776654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-10 Score=119.36 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=119.4
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.....+++++|++..+.+++.+... ...++.++.|+++||+ |||+++.++.++..+|.++++++..... ..+
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~i------~~s 119 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEVI------EGS 119 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcccc------cCc
Confidence 3445678899999999999887643 3446777899999996 9999999999999999999988622100 146
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH-Hhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL-GITLMSY 173 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i-g~~~~~~ 173 (478)
.+.+++.|++.|+|.+...+.....+.++|| ++ |+++.++.....++|+++ +++..++
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~--------------------RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN--------------------RGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh--------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999888888999999997 44 999999999999999975 5555555
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHH
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~ 199 (478)
+. .+|+..|++.+++..+..++..
T Consensus 179 ~~--~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 179 FS--DNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HH--HhHHHHHHHHHHHHHHHHHHHH
Confidence 54 3577767666655554443333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-10 Score=119.07 Aligned_cols=359 Identities=15% Similarity=0.141 Sum_probs=221.6
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc---cchhHH-HHHHHHHHHHhhHHh
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY---WDRHST-ILAFSFIYVLGLMAL 77 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Gr~~~-i~~~~~~~~ig~~l~ 77 (478)
++...+.+.-+..++..|.++..|+++..+|.+..+.-+.-.+.-|+.|.++||. +||+|- ++.+.+-+++...++
T Consensus 21 d~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~ 100 (467)
T COG2211 21 DFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLL 100 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHH
Confidence 3455667777888999999999999999999999999999999999999999974 577775 556667777777777
Q ss_pred hhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH
Q 042477 78 TSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY 157 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 157 (478)
..+... ..+......++--.+.+++...+.....++.++..++.+ +|.+..+|..
T Consensus 101 F~~p~~------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-------------------ER~~l~s~R~ 155 (467)
T COG2211 101 FITPDF------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-------------------ERASLTSWRM 155 (467)
T ss_pred HcCCCc------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-------------------HHHHHHHHHH
Confidence 766210 002455666777788899999999999999999987654 2999999999
Q ss_pred HHHhhhhhHHhhhhhhhcc-------ccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHH
Q 042477 158 FGVCSGSLLGITLMSYIQD-------TFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAA 230 (478)
Q Consensus 158 ~~~~~G~~ig~~~~~~i~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (478)
...++|.++...+.+.+.. ..||+..-.+.++...+.. +++....+++..+. .|
T Consensus 156 ~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~---l~~~~~v~ER~~~~----~~------------ 216 (467)
T COG2211 156 VFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL---LFCFFNVKERVVET----QP------------ 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH---HHHHHHhhcccCcc----cc------------
Confidence 9999998777665544422 3466655444444333333 33322222211111 00
Q ss_pred HhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhh--HHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 042477 231 SKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHA--VQNVKILLRLLPIWTMLLMFAVIFQQPVT 308 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (478)
. ++ .+++...+.. +...|.+... .....+.+..++...+
T Consensus 217 --------------~--~~--------------------~~~~~~~~~~~~~~~Nrp~~~~---l~~~l~~~~~~~i~~s 257 (467)
T COG2211 217 --------------T--KT--------------------GVKLKLKDSFLLIFKNRPLLLL---LLMNLLLFIAFNIRGS 257 (467)
T ss_pred --------------C--cc--------------------cccccHHHHHHHHHccchHHHH---HHHHHHHHHHHHHHhh
Confidence 0 00 0000000000 1111112111 2223333344443333
Q ss_pred hhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHH
Q 042477 309 FFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAA 388 (478)
Q Consensus 309 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 388 (478)
...++... .+|. -+..+...........++..+++ .++.+ +.++++.+.+|.++..++.+...
T Consensus 258 ~~~yy~~y---~lg~-~~l~~~~~~~~~~~~~l~~~~~~--------p~L~~-----~~gkk~~~~~~~~~~~i~~~~~~ 320 (467)
T COG2211 258 IMVYYVTY---VLGD-PELFAYLLLLASGAGLLIGLILW--------PRLVK-----KFGKKKLFLIGLLLLAVGYLLLY 320 (467)
T ss_pred hhheeEEE---EcCC-hHHHHHHHHHHHHHHHHHHHHhH--------HHHHH-----HhchHHHHHHHHHHHHHHHHHHH
Confidence 33333221 1111 11111121111222222222222 22222 45566778888888888888777
Q ss_pred HHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC-------chhHHHHHHHHHHHHhHHHHHHH
Q 042477 389 AVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVP-------VRMRTMGFALYTSVFGVGSFLSA 461 (478)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~lg~ 461 (478)
+.. ..+.+++++..++.++|.....+..++++.|.+. .+.-|...|.+.++.-+|.+++.
T Consensus 321 f~~-------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~ 387 (467)
T COG2211 321 FTP-------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387 (467)
T ss_pred hhc-------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 651 2355666667788899999998888888877654 45568889999999999999999
Q ss_pred HHHHHhhhcccc
Q 042477 462 LLISVIEFFTSS 473 (478)
Q Consensus 462 ~i~~~~~~~~~~ 473 (478)
.+.+++-...|-
T Consensus 388 ~~~g~~L~~~Gy 399 (467)
T COG2211 388 FIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHcCC
Confidence 999888776663
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.4e-13 Score=123.38 Aligned_cols=348 Identities=12% Similarity=0.113 Sum_probs=208.9
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
+.++.+.+.+.+.++..++.+.|+....+.+.++|++.||.+|-|..-++-+.+..+|.++.+.-... +.+
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~---------~aF 136 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS---------HAF 136 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH---------HHH
Confidence 56777778888888889999999999999999999999999999988888888888888887655331 678
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc
Q 042477 96 SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ 175 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~ 175 (478)
+.+..+|++.|+|.-......+.+...+|..++ .+.+++++.....+|+.+-..+.+++.
T Consensus 137 w~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE--------------------Ln~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 137 WTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE--------------------LNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHhhheeeccCchhhhhhhcceeEEEecCcc--------------------ccchhhHHHHHHHhhceeeeeecHHHH
Confidence 999999999999988888899999999999888 999999999999999988888888876
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCcccccccccc
Q 042477 176 DTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEK 255 (478)
Q Consensus 176 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (478)
++.+--.+ ...-.++++.+.+-. +.++ ......+.....+.+.+ +.-|. +.....+
T Consensus 197 ~~~~~~~~---~~ghT~LG~~l~~~~-~tc~-------------~slical~lg~~D~rAe----rilh~---e~g~~Ge 252 (459)
T KOG4686|consen 197 DTMGRMFP---GVGHTLLGLWLCFEV-KTCK-------------QSLICALSLGLSDDRAE----RILHL---EEGFLGE 252 (459)
T ss_pred HHHHHhcc---cchHHHHHHHHHHHH-HHHH-------------HHHHHHHHhhhhhhHHH----HHHhh---hcCcccC
Confidence 65442111 000011111110000 0000 00000000000000000 00000 0000000
Q ss_pred ccccCCCCCcccccCCCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcc
Q 042477 256 PLCCNDQNKELDDELENPKNVKHAVQNVKILLR-LLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQS 334 (478)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~ 334 (478)
... .++++.... ...+.+.++.+++......+ .-.....+. ++.++..-.+
T Consensus 253 ~pk---------------------Ltdv~~f~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~r----fGlS~~~a~~ 304 (459)
T KOG4686|consen 253 EPK---------------------LTDVNTFYPPFWVLVIICVLYYVAWFPFIT---LGPMFFQKR----FGLSAVSAGN 304 (459)
T ss_pred Ccc---------------------cccccccCccHHHHHHHHHHHHHHHHHHhh---hhHHHHHHh----hCCChhhccc
Confidence 000 111111111 11122333333333322111 101112222 2333333333
Q ss_pred hhH---HHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHH
Q 042477 335 AIT---VSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWL 411 (478)
Q Consensus 335 ~~~---~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (478)
+++ ....+..|+.+.+.++..+++ ..+..+.+....+-....+.. .++|
T Consensus 305 i~s~vy~Isav~spvfg~i~Dk~G~n~------------~wv~~a~~~tl~~H~~l~Ft~--------------lsPy-- 356 (459)
T KOG4686|consen 305 ILSTVYGISAVLSPVFGAISDKYGFNL------------WWVASACILTLLGHSGLFFTF--------------LSPY-- 356 (459)
T ss_pred hhhhhhhhhhhhhhhHHHhHhhhccee------------hhHHHHHHHHHHHhhhHHhhh--------------ccHH--
Confidence 333 334455666666655433332 223334444444444444331 2333
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 412 LPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 412 i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
..+.++|+...+..-..+-.+...+|++.-|++.|..+..+++|-.+.+.+.+.+.+..|+
T Consensus 357 -~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 357 -TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred -HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence 3467788888888888888999999999999999999999999999999999999887775
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-09 Score=114.14 Aligned_cols=66 Identities=24% Similarity=0.182 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 408 IFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 408 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
.+-..+.-++.|+..+...+..-++..+..|++..+...|++.+.....+++||.+.+.+.+.+|+
T Consensus 380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~ 445 (477)
T PF11700_consen 380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS 445 (477)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444566788999999999999999999999999999999999999999999999999999985
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-11 Score=115.22 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=116.1
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.+.+-+.+..|.+..+..++......+..+++-..|.++|++ |||+......+...+.-.+-..+ .+
T Consensus 99 ~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s------------pn 165 (528)
T KOG0253|consen 99 LILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS------------PN 165 (528)
T ss_pred HHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC------------CC
Confidence 344455566788888899999999999999999999999996 99999998888877776666666 78
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
+..+.+.|.+.|+|.|+ .|...++-.|..|..+ |...+-.. .-..+|.+....+.=..
T Consensus 166 f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~--------------------r~~~~V~~-~~waig~v~ea~law~v 223 (528)
T KOG0253|consen 166 FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH--------------------RWLLTVMS-FFWAIGQVFEALLAWGV 223 (528)
T ss_pred eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC--------------------CCcchhHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999 8999999999999876 55554444 45667777776666556
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH
Q 042477 175 QDTFGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 175 ~~~~g~~~~f~~~~~~~~~~~~~~ 198 (478)
..++|||+..........+...+.
T Consensus 224 m~~~gwr~~l~~~~~pl~~~a~f~ 247 (528)
T KOG0253|consen 224 MSNFGWRYLLFTSSTPLMFAARFL 247 (528)
T ss_pred HHhhhHHHHHHHHHhHHHHHHHHH
Confidence 678899997666554333333333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=129.43 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=134.0
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
.++++.+..+++.|+.+ .|.+ +.+...+.+.++..++.++.|++.||+ |||+.+..+..+..++.++....
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~----- 299 (399)
T PRK05122 229 SIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA----- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh-----
Confidence 45566667788888864 4553 456666777788888999999999996 99999999988888888777665
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+...+++.+++.|++.+...|.......|.+|+++ |++.+++++...++|..
T Consensus 300 -------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 300 -------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN--------------------RGAALGAYSVFLDLSLG 352 (399)
T ss_pred -------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHHHHHH
Confidence 556667788899999999888888888888888776 99999999999999999
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccccc
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCK 206 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 206 (478)
+++.+.|++.+..||+..|.+.+.+.+++.++.+...++.+
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999899999999888877777666665544433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=110.06 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=116.3
Q ss_pred HHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhcccccc
Q 042477 35 VSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNP 114 (478)
Q Consensus 35 ~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 114 (478)
.+.+.++..++.++.|+++||+ |||+.+..+..+..++.++.... .+.+.+.+.+++.|++.+...+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGAAFALV 70 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888999999999996 99999999999999988887776 5678888899999999999999
Q ss_pred chhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 042477 115 SLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTS 194 (478)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~ 194 (478)
...++..|.+|+++ |++.+++.+...++|..+++.+.+++.+..+|+..|.+..+..+++
T Consensus 71 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 71 AGAALIADIYPPEE--------------------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred hHHHHHHHHCChhh--------------------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 99999999999877 9999999999999999999999999988889999998887766666
Q ss_pred HHHHHhh
Q 042477 195 TAFFSFA 201 (478)
Q Consensus 195 ~~~~~~~ 201 (478)
.+..++.
T Consensus 131 ~~~~~~~ 137 (141)
T TIGR00880 131 FILLAFL 137 (141)
T ss_pred HHHHhhc
Confidence 5554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=129.23 Aligned_cols=166 Identities=8% Similarity=0.027 Sum_probs=123.9
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhh-hcccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALT-STAFA 83 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~-~~~~~ 83 (478)
..+.||++..++|.|+++.+|++..+.++......++..++.+++|+++||+ |||+++..+.++..++.+.+. ....
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~- 339 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAFILINS- 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 4467889999999999988999998888888888888999999999999996 999999888765554433322 2211
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
.+...+++++++.+++.+...+....+..|.+|++. |+++++..+....++
T Consensus 340 ---------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~--------------------Rg~~~g~~~~~~~~~ 390 (490)
T PRK10642 340 ---------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI--------------------RYSALAAAFNISVLV 390 (490)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc--------------------chHHHHHHHHHHHHH
Confidence 345677788888888777766777888889999887 999999866666777
Q ss_pred hhHHhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHhh
Q 042477 164 SLLGITLMSYIQDTF-GWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~-g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
+.++|.+.+++.+.. +|+.++.+..+..+++.+..++.
T Consensus 391 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 391 AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 788999999887654 46666555444444444444443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-12 Score=126.28 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=79.3
Q ss_pred CChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHH
Q 042477 26 MSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLI 105 (478)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (478)
+++...+.+..+..++..+++++-||++|++ |||+++...+++..+++++++.+-.. ++...-..++...|+++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~-----~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGT-----TSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCC-----CCCcchhhHHHHHHHHh
Confidence 4566678888888899999999999999996 99999999999999999866655221 11013457888999999
Q ss_pred HHhccccccchhhhhhccCCCCC
Q 042477 106 SLGLAGYNPSLQAFGADQMDNNN 128 (478)
Q Consensus 106 g~g~g~~~~~~~~~~~~~~~~~~ 128 (478)
|+|.|+-.|...++.+|....+.
T Consensus 155 GiGIGGDYPlSAtI~SE~an~~~ 177 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESANKKT 177 (538)
T ss_pred hccccCCCcchHHHhhhhhhhcc
Confidence 99999999999999999766544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=125.94 Aligned_cols=159 Identities=9% Similarity=0.024 Sum_probs=125.6
Q ss_pred hhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCC
Q 042477 9 FKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESP 88 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~ 88 (478)
++....+++.|+++++|+++.+.+.+.+...+...++.+++|+++||+ |||+.+..+.....+........
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~-------- 302 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMA-------- 302 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344456788999999999999999988887777888899999999996 99998887766655554443333
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh
Q 042477 89 ANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 168 (478)
.+...+++.+++.+++.|...+...++..|.+|+ + |+++++.++...++|..+||
T Consensus 303 ----~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~--------------------~g~~~~~~~~~~~lg~~~g~ 357 (393)
T PRK15011 303 ----HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q--------------------AGSATTLYTNTSRVGWIIAG 357 (393)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C--------------------cchHHHHHHHHHHHHHHHHH
Confidence 4456666778777777776666677778888773 4 78999998888999999999
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 169 TLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 169 ~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
.++|++.+.+||+..|.+..++.+++.+..+..
T Consensus 358 ~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 358 SLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998999999998887777766665543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=121.73 Aligned_cols=163 Identities=22% Similarity=0.242 Sum_probs=146.2
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhH-HHHHHHHHHHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHS-TILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~-~i~~~~~~~~ig~~l~~~~~~ 82 (478)
+....+.....+++.|+.+.+|.++.+.+.......++..++.++.|+++||+ |||+ .+..+..+..++.+.....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-- 262 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLALA-- 262 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHh--
Confidence 44556677778899999888899999999999999999999999999999996 9999 9999999999999888877
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+....++..++.|++.+...+...+++.|..|+++ |++.++..+...++
T Consensus 263 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 312 (352)
T cd06174 263 ----------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA--------------------RGTASGLFNTFGSL 312 (352)
T ss_pred ----------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH--------------------HHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999877 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~ 199 (478)
|..+++.+.+++.+..+|+..|.+.++..+++.++.+
T Consensus 313 ~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999889999999998887777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=128.87 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=123.5
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
...+++...++|.|+++.+|++..++++......++..++.+++|+++||+ |||+.+.....+..++..++.....
T Consensus 271 ~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~~~~~~~~~--- 346 (467)
T PRK09556 271 YIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIFTLGVYQHA--- 346 (467)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHHHHHHhc---
Confidence 345567778899999999999999999999999999999999999999996 9998877665544444332222210
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh-hh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS-GS 164 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~ 164 (478)
.+....++.+++.|+...+..........|.+|+++ |+++.+..+...++ |.
T Consensus 347 -------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~--------------------~g~a~gi~~~~g~l~g~ 399 (467)
T PRK09556 347 -------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA--------------------IGVANGIKGTFAYLFGD 399 (467)
T ss_pred -------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh--------------------HHHHHHHHHHHHHHHhH
Confidence 344555567777775443333333466779999877 99999999999887 77
Q ss_pred hHHhhhhhhhcc------------ccchhHHHHHHHHHHHHHHHHHHh
Q 042477 165 LLGITLMSYIQD------------TFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 165 ~ig~~~~~~i~~------------~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.++|.+.|++.+ ..+|+..|.+..++.+++.++.++
T Consensus 400 ~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 400 SFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 578999998887777766555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=122.43 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=126.3
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
.......+.|. +++|.++.+.+.+.+.+.+...++.++.|+++||+ |||+.+.++.++..++.++......
T Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~------- 292 (377)
T TIGR00890 222 LLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFIPM------- 292 (377)
T ss_pred HHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHccc-------
Confidence 33444556665 56899999999999999999999999999999996 9999999999988888877665521
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
.....++...++.+++.|...+..+++..|.+|+++ |++.+++.+...++|..++|.
T Consensus 293 ---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~~g~~~~~~ 349 (377)
T TIGR00890 293 ---LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN--------------------SAANYGFLYTAKAVAGIFGGL 349 (377)
T ss_pred ---chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh--------------------hhhHhHHHHHHHHHHHHHHHH
Confidence 123334456677888888888888899999999887 999999999999999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHH
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTS 194 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~ 194 (478)
+.+++.++.||+..|.+.+++.+++
T Consensus 350 ~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 350 IASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9999999999999998877765554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=124.71 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=129.0
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
...+++++..++|.|+++.+|+++.+.+.+.+.+.++..++.+++|+++||+ |||+.+.....+..++..+....
T Consensus 217 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~---- 291 (394)
T PRK03699 217 YILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMYLFVNT---- 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHc----
Confidence 3456677888999999999999999999999999999999999999999996 99999888777766665555444
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
++...+.+..++.|++.+...|...++..|..|.+ +++..++.....++|.
T Consensus 292 --------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 292 --------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA---------------------SPKLVNFILTCGTIGT 342 (394)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---------------------CHHHHHHHHHhhhHHH
Confidence 44555566677788888878888888888876533 4566788888889999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~ 198 (478)
.++|.+.|++.+..||+..|++..++..++.++.
T Consensus 343 ~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 343 MLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 9999999999998999999987777666654443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=121.93 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=127.3
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
......++.|+++++|.++.+.+.+.....+...++.+++|+++||+ |||+++..+.++..+...+....
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--------- 285 (375)
T TIGR00899 216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD--------- 285 (375)
T ss_pred HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH---------
Confidence 33455678899889999999999888877777778889999999996 99999988877666555544444
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
++.+.+++.+++.|++.|...+...++..|..|+ + ++++++.++...++|..++|.
T Consensus 286 ---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~~g~~~g~~ 341 (375)
T TIGR00899 286 ---NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R--------------------AGAATTLYTNTGRVGWIIAGS 341 (375)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h--------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888888888888888764 3 669999999999999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+++++.+..||+..|.+.+++.+++.++...
T Consensus 342 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 342 VGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 9999988899999999888877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=123.86 Aligned_cols=163 Identities=12% Similarity=-0.004 Sum_probs=135.1
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
.++..+++.|+++.+|.++.+.+++.+.+.++..++.++.|+++||. ++++.+..+..+..++.+++...
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---------
Confidence 45566788899888999999999999999999999999999999995 88888888888888887776655
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
++.....++.++.|++.+...+...+++.|..|++. |++.+++++...++|..+|+.
T Consensus 310 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 310 ---PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM--------------------LGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH--------------------HHHHHHHHHHHHhhhHhHHHH
Confidence 456666777888888888877888889999999777 999999999999999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
+.|++.+..|++..+.+.+++.++..++.....++.
T Consensus 367 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 367 LLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998888877766555544444444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=121.42 Aligned_cols=158 Identities=14% Similarity=0.100 Sum_probs=126.3
Q ss_pred hhhHHHHHHhhhhcCCChh---hHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 11 GVASNLVTYLTDVMKMSNS---SAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 11 ~~~~~l~~yl~~~l~~~~~---~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
.+...++.|+.+..+.... ..+.+.+...++..++.+..|+++||+ |||+.+..+..+..++.+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~------- 308 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV------- 308 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh-------
Confidence 3445677777654432221 234555666677788889999999996 99999999988887777766655
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
++.+.+++.+++.|++.+...|...+++.+..|+++ |++.+++++...++|..+|
T Consensus 309 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~~g~~~g 363 (408)
T PRK09874 309 -----QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI--------------------AGRIFSYNQSFRDIGNVTG 363 (408)
T ss_pred -----ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc--------------------ceeeehHHHHHHHHHHHhh
Confidence 456777888899999999999999999988888766 8999999999999999999
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 168 ITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 168 ~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
|.++|++.+..||+..|.+.+++.+++.+..+..
T Consensus 364 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 364 PLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888777766655543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-11 Score=122.27 Aligned_cols=163 Identities=13% Similarity=0.064 Sum_probs=128.9
Q ss_pred hhhHHHHHHhhhhcCCCh--------hhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 11 GVASNLVTYLTDVMKMSN--------SSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 11 ~~~~~l~~yl~~~l~~~~--------~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
....+++.|++ +.|.++ +..+...+...+...++.++.|+++||+ |||+++..+.++..++.+++.....
T Consensus 226 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~~~~ 303 (418)
T TIGR00889 226 ITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAYGDP 303 (418)
T ss_pred HHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34455667775 455443 5668888888889999999999999996 9999999999999888777766411
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH-HHHh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY-FGVC 161 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ 161 (478)
. +.+...+++..++.|++.+...+....+++|.+|+++ |++.+++.+ ...+
T Consensus 304 ~--------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~--------------------~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 304 E--------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI--------------------RASAQGLFTLMCNG 355 (418)
T ss_pred c--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHh
Confidence 0 0134567788899999999888999999999999887 999999997 5678
Q ss_pred hhhhHHhhhhhhhccc------cchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 162 SGSLLGITLMSYIQDT------FGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
+|..+||.++|++.++ +||+..|.+.+++.+++.++.++..+
T Consensus 356 lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 356 FGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred hHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999876 46999999888877776655555543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=118.46 Aligned_cols=162 Identities=12% Similarity=0.023 Sum_probs=128.5
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
..+++...+++.|+++.+|.++.+.+++.+...+...++.++.|+++||+ |||+. ..+..+..++..++....
T Consensus 219 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~l~~~~----- 291 (390)
T PRK03545 219 TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLLLLPAA----- 291 (390)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHHHHHHh-----
Confidence 44555666788888888999999999999999999999999999999996 98765 445555555444332221
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
++...+++..++.|++.+...+...+.+.+..| ++ |+++++++....++|..+
T Consensus 292 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~g~~~~~~~~g~~~ 344 (390)
T PRK03545 292 ------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA--------------------TDVAMALFSGIFNIGIGA 344 (390)
T ss_pred ------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc--------------------HHHHHHHHHHHHHHHHHH
Confidence 456677778888899988877888888888765 34 889999999999999999
Q ss_pred HhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 167 GITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 167 g~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
||.++|++.+++|++..|.+.+.+.+++.++.+...
T Consensus 345 G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 345 GALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998888777766655544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=121.83 Aligned_cols=159 Identities=12% Similarity=0.128 Sum_probs=131.4
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
+.+..+..+++.|+++ .|++. .+.....+.++..++.++.|++.||+ ||||.+..+..+..++.++....
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~------ 299 (392)
T PRK12382 230 VGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA------ 299 (392)
T ss_pred HHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc------
Confidence 4556666777888864 56543 45566667777888999999999996 99999999999888888777665
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
.+...++++.++.|++.+...|...+...|.+|+++ |++.+++++...++|..+
T Consensus 300 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 300 ------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV--------------------RGTALGGYAAFQDIAYGV 353 (392)
T ss_pred ------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH--------------------HHHHHHHHHHHHHHHHHH
Confidence 456677788889999999888888888999988777 999999999999999999
Q ss_pred HhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 167 GITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 167 g~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
||.+.+++.++.||+..|.+.+.+.+++.++.+..
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999888777776665543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=108.37 Aligned_cols=83 Identities=6% Similarity=-0.112 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
.++..+.++.+++|.|.+..++..++++++..|+++ +.+.+++......+|..+||.+++
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~--------------------~~~~l~~~~~~~~~G~~~gP~i~~ 67 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET--------------------AASRLALTQAFNKLGTTVAPLFGG 67 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch--------------------HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 578899999999999999999999999999998877 889999999999999999999999
Q ss_pred hhccc----------------cchhHHHHHHHHHHHHHH
Q 042477 173 YIQDT----------------FGWVIGFAIPTIAMLTST 195 (478)
Q Consensus 173 ~i~~~----------------~g~~~~f~~~~~~~~~~~ 195 (478)
.+... ..|+++|++.+.+..+..
T Consensus 68 ~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 68 SLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLA 106 (310)
T ss_pred HHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 76521 478899885555444433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=119.61 Aligned_cols=160 Identities=16% Similarity=0.005 Sum_probs=126.3
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
..++.+..++|.|++ +.|+++.+.+.....+.++..++.++.|+++||+ |||+.+..+.....++..++...
T Consensus 234 ~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~------ 305 (406)
T PRK11551 234 IVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAA------ 305 (406)
T ss_pred HHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhc------
Confidence 345556667888886 4799999999999999999999999999999996 99999888776666666655544
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
.+...+.+..++.|++.++..+...++..|.+|+++ |++.+++.+...++|..+
T Consensus 306 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~g~~~ 359 (406)
T PRK11551 306 ------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV--------------------RGTGVGAAVAVGRLGSMA 359 (406)
T ss_pred ------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh--------------------hhhhhhHHHHhhhHHHHH
Confidence 445556666677888887788889999999999887 999999999999999999
Q ss_pred Hhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 042477 167 GITLMSYIQDTF-GWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 167 g~~~~~~i~~~~-g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
||.++|++.++. +|...+.+...+.+++.++.+.
T Consensus 360 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 360 GPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999987764 4555566555555555444443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-11 Score=121.51 Aligned_cols=158 Identities=10% Similarity=0.056 Sum_probs=128.3
Q ss_pred hhhhHHHHHHhhhhc---CCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 10 KGVASNLVTYLTDVM---KMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
......++.|+.+.+ +.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++..++..+..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~------ 312 (420)
T PRK09528 240 DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA------ 312 (420)
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc------
Confidence 334445777776543 55667788999988888899999999999996 99999999999999988887776
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh-HHHHHhhhhh
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW-WYFGVCSGSL 165 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~ 165 (478)
++.+.+++.+++.+++.+...+....++.|.+|++. +++.++. ++...++|..
T Consensus 313 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~a~~~~~~~~~~~~lg~~ 366 (420)
T PRK09528 313 ------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL--------------------SATIYLVGFQFAKQLGAV 366 (420)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc--------------------eeeeeeehHHHHHHHHHH
Confidence 567778888999999988888888889999988766 6676655 6677889999
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+++.++|++.+.+||+..|.+.+++.++..++.++
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877766655544443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=117.89 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=123.4
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
.+.....++|.|+++ .|.++.+.+...+...+...++.++.|+++||+ |||+++..+.++..++.+... .
T Consensus 215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------- 284 (381)
T PRK03633 215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------- 284 (381)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-------
Confidence 344455678888865 699999999999999999999999999999996 999999998888887765443 2
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
. ......+++.|++.+...|...+.+.|..|+++ ++...+.++...++|..+|
T Consensus 285 -----~--~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~lG~~ig 337 (381)
T PRK03633 285 -----Q--AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE--------------------LVAMNQALLLSYTVGSLLG 337 (381)
T ss_pred -----h--HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH--------------------HHHHHHHHHHHHHHHHHHH
Confidence 1 123345666777777778999999999888765 7777888888899999999
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042477 168 ITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 168 ~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~ 199 (478)
|.++|++.++.||++.|.+.+.+.++...+.+
T Consensus 338 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 338 PSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777665544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=122.56 Aligned_cols=147 Identities=14% Similarity=0.026 Sum_probs=115.3
Q ss_pred hhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCC
Q 042477 12 VASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANT 91 (478)
Q Consensus 12 ~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~ 91 (478)
+..++|.|+++++|+++.+.+++.+...++..++.+++|+++||+ |||+++..+.++..++.+++.....
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 363 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------- 363 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc---------
Confidence 456789999889999999999999999999999999999999996 9999988887776666554433311
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 92 TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 92 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
.+.+...+..++.+....+..+..++++.|.+|+++ |++.+++++...++|+.+||.++
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~~g~~lgp~l~ 422 (496)
T PRK03893 364 -ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ--------------------RAAGLGFTYNVGALGGALAPILG 422 (496)
T ss_pred -cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH--------------------hhcccchhhhhhhHHHHHHHHHH
Confidence 233333344444333333345677788999999877 99999999999999999999999
Q ss_pred hhhccccchhHHHHHHHH
Q 042477 172 SYIQDTFGWVIGFAIPTI 189 (478)
Q Consensus 172 ~~i~~~~g~~~~f~~~~~ 189 (478)
|++.+.+||+..+.+...
T Consensus 423 g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 423 ALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHhccCChHHHHHHHHH
Confidence 999999999988755444
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.8e-11 Score=127.88 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=109.1
Q ss_pred HHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhcccccc
Q 042477 35 VSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNP 114 (478)
Q Consensus 35 ~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 114 (478)
..+..++..++.+++|+++||+ |||+++.++.++.+++.+++.+. .+...+++.+++.++..++..+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~------------~s~~~ll~~~~l~g~~~~~~~~ 667 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG------------NSESAMIALLCLFGGLSIAAWN 667 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 4445577788999999999996 99999999999999998888776 4556667777788887778888
Q ss_pred chhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 042477 115 SLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTS 194 (478)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~ 194 (478)
...++++|++|.+. |++++++.+...++|+++||.+++++.+. +...+|++.+++.+++
T Consensus 668 ~~~a~~aEl~Pt~~--------------------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 668 ALDVLTVELYPSDK--------------------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 99999999999887 99999999999999999999999987653 5667788777766666
Q ss_pred HHHHHh
Q 042477 195 TAFFSF 200 (478)
Q Consensus 195 ~~~~~~ 200 (478)
.++.++
T Consensus 727 ~ll~~~ 732 (742)
T TIGR01299 727 GLLALK 732 (742)
T ss_pred HHHHHh
Confidence 555444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=121.33 Aligned_cols=165 Identities=12% Similarity=0.090 Sum_probs=115.0
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhcc-chhHHH-HHHHHHHHHhhHHhhhcccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYW-DRHSTI-LAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-Gr~~~i-~~~~~~~~ig~~l~~~~~~~ 83 (478)
...+++...++|.|+++..|++..+++.....+.+...++.+++|+++||+. |||+.. .....+..++.+.+.....
T Consensus 266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~- 344 (452)
T PRK11273 266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA- 344 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc-
Confidence 3456778889999999889999999999888888889999999999999951 344332 2223333444333322210
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
.+....++..++.|.+.....+....+..|.+|++. |++++++.+...++|
T Consensus 345 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~g 395 (452)
T PRK11273 345 ---------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA--------------------AGTAAGFTGLFGYLG 395 (452)
T ss_pred ---------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh--------------------hhhHHHHHHHHHHHH
Confidence 233334444455554433322334456678898877 999999999988998
Q ss_pred hhH-HhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 164 SLL-GITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 164 ~~i-g~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+.+ ||.+.|++.+.+||+..|.+..+..+++.+....
T Consensus 396 ~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 396 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 765 7999999999999999998887766666554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=118.66 Aligned_cols=169 Identities=14% Similarity=0.040 Sum_probs=122.5
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+..+++|....+++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++..++.+.+......
T Consensus 261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~ 339 (438)
T PRK09952 261 CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFFMALEA 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567888888999999999999887665555555666778888999999996 99999988877665554333322100
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHH-Hhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFG-VCS 162 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~ 162 (478)
.+....+++..++.+++.+...+...++.+|.+|.+. |+.+.++.+.. ..+
T Consensus 340 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~--------------------r~tg~g~~~~~~~~l 391 (438)
T PRK09952 340 --------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY--------------------RYSGAGVGYQVASVV 391 (438)
T ss_pred --------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch--------------------hHHHHhHHHHHHHHH
Confidence 0223444455666678888888888999999999876 88888885544 458
Q ss_pred hhhHHhhhhhhhcccc--chhHHHHHHHHHHHHHHHHHHhh
Q 042477 163 GSLLGITLMSYIQDTF--GWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~--g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
|+.++|.+.+++.+.. +|..++...+++.+++.+..+..
T Consensus 392 gg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 392 GGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999987633 48888777766666665555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=116.59 Aligned_cols=165 Identities=11% Similarity=0.059 Sum_probs=129.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+..++++++..+++.|+++ +|.+..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..++.++.....
T Consensus 216 ~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~~~~~~~~-- 291 (393)
T PRK09705 216 LINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGFCGFIWLP-- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHcc--
Confidence 3456788888999999975 899999999999999999999999999999996 999999999888888776654331
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
.+.... ..++.|+|.+...|.......|..++++ ++++.++..+...+++
T Consensus 292 ---------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-------------------~~g~~~g~~~~~~~~~ 341 (393)
T PRK09705 292 ---------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-------------------IAGKLVAFMQGIGFII 341 (393)
T ss_pred ---------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-------------------HHHHHHHHHHHHHHHH
Confidence 222222 2245688888888887777778775432 1899999999999999
Q ss_pred hhHHhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhhc
Q 042477 164 SLLGITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
..++|.+.|++.+..| |...|.+.+.+.+...++.....
T Consensus 342 ~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 342 AGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998876 77888877766665555544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=117.43 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=121.4
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhh-HHhh-hcc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGL-MALT-STA 81 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~-~l~~-~~~ 81 (478)
+....++....+++.|+++++|.++.+.+.......+...++.+++|+++||+ |||+.+..+..+..+.. .+.. ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLAVPLLMALLD 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777788899999889999999999999999999999999999999996 99998876555444332 2222 211
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhH-HHHH
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWW-YFGV 160 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~ 160 (478)
. .+...+++..++.+++.+...+...+++.|.+|+++ |+++++.. ....
T Consensus 309 ~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------------------~~~~~~~~~~~~~ 358 (394)
T TIGR00883 309 S----------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV--------------------RYTGASLAYNLAG 358 (394)
T ss_pred C----------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc--------------------eeeEeeehhHhHH
Confidence 1 345566677788888888888999999999999877 88888884 4556
Q ss_pred hhhhhHHhhhhhhhccccc-hhHHHHHHHHH
Q 042477 161 CSGSLLGITLMSYIQDTFG-WVIGFAIPTIA 190 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~~~g-~~~~f~~~~~~ 190 (478)
.+|..++|.++|++.++.| |+..++..+.+
T Consensus 359 ~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 359 AIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 7899999999999988888 87766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=115.04 Aligned_cols=165 Identities=16% Similarity=0.036 Sum_probs=119.2
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHH-HHHHHHHHHHh---hHHhhh
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHST-ILAFSFIYVLG---LMALTS 79 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~-i~~~~~~~~ig---~~l~~~ 79 (478)
+..+.+.....+++.|+++.+|.++.+.+++.+...+...++.+++|+++||+ |||+. +........++ ..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 226 LVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHH
Confidence 34456667778899999999999999999999999999999999999999996 99861 11111111111 111111
Q ss_pred -cccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 80 -TAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
... ............+.+.+.+ ..|...++..|.+|+++ |++.+++.+.
T Consensus 305 ~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~ 354 (399)
T TIGR00893 305 ATNY---------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI--------------------AGLTGGLINS 354 (399)
T ss_pred Hhcc---------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH--------------------HHHHHHHHHH
Confidence 110 0223333333333334444 78999999999999887 9999999999
Q ss_pred HHhhhhhHHhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 042477 159 GVCSGSLLGITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 159 ~~~~G~~ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~ 199 (478)
..++|..++|.+.+++.+..| |+..|.+.++..+++.+..+
T Consensus 355 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 355 LGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 99999888777666655543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=114.98 Aligned_cols=164 Identities=19% Similarity=0.158 Sum_probs=131.6
Q ss_pred hhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhcc-chhHHHH-HHHHHHHHhhHHhhhccccccc
Q 042477 9 FKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYW-DRHSTIL-AFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-Gr~~~i~-~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
=|++..+.|+|+.|..|+|..++++..+.+-.+...+++++||+|||++ |||.... +.++..+++.+....+..
T Consensus 268 R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~---- 343 (448)
T COG2271 268 RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPN---- 343 (448)
T ss_pred HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCC----
Confidence 3678889999999999999999999999999999999999999999998 7776554 334444444444444421
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh-hhh
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS-GSL 165 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~ 165 (478)
.+..+..+..+++|+-.-+-+-.+.....|..|++- -|++.+...+...+ |..
T Consensus 344 ------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A--------------------aGtA~Gf~Glf~Yl~Ga~ 397 (448)
T COG2271 344 ------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA--------------------AGTATGFVGLFAYLIGAA 397 (448)
T ss_pred ------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh--------------------ccchhchhhhHHHHhhHH
Confidence 456777888888888777777778888889988776 78999998888888 888
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.+....+++.+.+||...|.+-.+..+++.+++....
T Consensus 398 ~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 398 LAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8888889998989999999988877777666555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-10 Score=114.98 Aligned_cols=158 Identities=11% Similarity=0.001 Sum_probs=134.9
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+...++.....+.+.|+++ +|.++.+.+...+...+...+..++.|++.||+ |+|+.+.++.+...+...+....
T Consensus 216 l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~--- 290 (382)
T TIGR00902 216 LIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGRWAIIGAI--- 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHHHHHHHhH---
Confidence 3456677788889999964 999999999999988888999999999999996 99999999999999999888776
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH-HHHhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY-FGVCS 162 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~ 162 (478)
++.+.+++..++.|+..|...+....++.+. |+++ |++..+.++ ....+
T Consensus 291 ---------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~--------------------~~~~q~~~~~~~~g~ 340 (382)
T TIGR00902 291 ---------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE--------------------IAKLQALYNALAMGG 340 (382)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh--------------------HHHHHHHHHHHHHHH
Confidence 7788888899999999999999999999987 7666 888888876 46789
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~ 197 (478)
|..+|+.++|++.+++|+ ..|.+.+...+++.++
T Consensus 341 g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 341 LIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999999999999999886 6677666665555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=117.97 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=128.1
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc-cchhHHHHHHH--HHHHHhhHHhhhccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY-WDRHSTILAFS--FIYVLGLMALTSTAF 82 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~-~Gr~~~i~~~~--~~~~ig~~l~~~~~~ 82 (478)
.+++++...+++.|++ ++|+++.+++.+.+...++..++.+++|+++||. +++|+...++. ++..++.+++...
T Consensus 254 ~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-- 330 (455)
T TIGR00892 254 FLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-- 330 (455)
T ss_pred HHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3455666778899986 5799999999999999999999999999999973 24444444333 3333444444444
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+.+.+++.+++.|++.+...++..+++.|.+|+++ +++.+++++...++
T Consensus 331 ----------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~l 380 (455)
T TIGR00892 331 ----------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR--------------------FSSAVGLVTIVECC 380 (455)
T ss_pred ----------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH--------------------HhhHHhHHHHHHHH
Confidence 567778888999999999999999999999999877 89999999999999
Q ss_pred hhhHHhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 042477 163 GSLLGITLMSYIQDTF-GWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~-g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
|..+||.++|++.+.. +|+..|.+.+++.+++.+...+
T Consensus 381 g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~ 419 (455)
T TIGR00892 381 AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI 419 (455)
T ss_pred HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence 9999999999998877 5999999888876666554333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-10 Score=116.71 Aligned_cols=166 Identities=13% Similarity=0.044 Sum_probs=112.2
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccc--hhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWD--RHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--r~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
+.++++..++|.|+++++|++..+++...+.+.++..++.+++|+++||+.+ |+.......+...+..+.+.....
T Consensus 257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-- 334 (434)
T PRK11663 257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF-- 334 (434)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc--
Confidence 4455667789999988899999999999999999999999999999999522 223222211111112111111110
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.+.....+..+..|++............+|.+|+++ |++..++.+...++|.
T Consensus 335 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~g~ 386 (434)
T PRK11663 335 --------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA--------------------AGAATGFVGLFAYLGA 386 (434)
T ss_pred --------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh--------------------HHhHHHHHHHHHHHHH
Confidence 222222233333343322222233456678887766 9999999999999999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.++|.+.|++.++.||+..|.+.+++.+++.+..+...
T Consensus 387 ~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 387 ALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887776655544433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=116.05 Aligned_cols=144 Identities=15% Similarity=0.074 Sum_probs=116.7
Q ss_pred hhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCC
Q 042477 11 GVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPAN 90 (478)
Q Consensus 11 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~ 90 (478)
++..+++.|+++++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+..+..+.........
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 325 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAIG--------- 325 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHhC---------
Confidence 4455688899889999999999999999999999999999999996 999999888776533333222221
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhh
Q 042477 91 TTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 170 (478)
.+.+.+.++.++.++..++..+..++++.|.+|+++ |++.+++.+...++|..++|.+
T Consensus 326 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~~g~~~g~~~ 383 (405)
T TIGR00891 326 --ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ--------------------RAAGLGFTYQLGNLGGALAPII 383 (405)
T ss_pred --CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch--------------------hHHHhhHHHHHHHHHHHHHHHH
Confidence 345556666677777777777888899999999877 9999999999999999999999
Q ss_pred hhhhccccc-hhHHHHH
Q 042477 171 MSYIQDTFG-WVIGFAI 186 (478)
Q Consensus 171 ~~~i~~~~g-~~~~f~~ 186 (478)
.|++.++.| |+..|..
T Consensus 384 ~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 384 GALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHhccccchhHHh
Confidence 999999888 8766554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-08 Score=100.89 Aligned_cols=129 Identities=18% Similarity=0.099 Sum_probs=89.8
Q ss_pred hhHHHHHHhhhhcCC---Chhh----HhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHH-HHHHHHHHhhHHhhhcccc
Q 042477 12 VASNLVTYLTDVMKM---SNSS----AAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL-AFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 12 ~~~~l~~yl~~~l~~---~~~~----~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~-~~~~~~~ig~~l~~~~~~~ 83 (478)
+...+|+|+++..+. ++.+ .+...++..+...+..|.-|.++|+. |+||-.. ....+-.+..+++.+...
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 445789999987665 3333 35667777788899999999999997 8666554 455555556666666621
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
++......+..++..++..+......+++.|..++++ .++.-+.-|-...+|
T Consensus 112 --------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~--------------------~~riS~lg~~~gylg 163 (438)
T COG2270 112 --------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN--------------------MGRISGLGWALGYLG 163 (438)
T ss_pred --------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc--------------------cCccccccccccccc
Confidence 1345555666677889999999999999999998876 444455545556677
Q ss_pred hhHHhhh
Q 042477 164 SLLGITL 170 (478)
Q Consensus 164 ~~ig~~~ 170 (478)
+.+.-++
T Consensus 164 s~i~li~ 170 (438)
T COG2270 164 SVILLIF 170 (438)
T ss_pred chHHHHH
Confidence 7665443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.5e-10 Score=114.20 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=122.7
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHH-HHHHHHHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL-AFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~-~~~~~~~ig~~l~~~~~~ 82 (478)
+...++++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...++.+.+.....
T Consensus 233 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~~~~l~~~~~ 310 (402)
T TIGR00897 233 INTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIFTLALYYIPQ 310 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888889999985 5899999999999999999999999999999996 9988764 333333333333222100
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.. .++.+..++..++.|++.+...| ..+...|..| ++ |++.+++.+...++
T Consensus 311 ~~-------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~--------------------~g~~~g~~~~~~~l 361 (402)
T TIGR00897 311 HF-------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH--------------------KGAAMSVLNLSAGL 361 (402)
T ss_pred cc-------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch--------------------hHHHHHHHHHHHHH
Confidence 00 03455566777778888777655 3455666543 34 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
|..++|.+++++.+..||+..|.+.+++.+++.++..+
T Consensus 362 g~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 362 SAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999899999999888777666655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.5e-10 Score=114.19 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=107.0
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhH-Hhhhcccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLM-ALTSTAFA 83 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~-l~~~~~~~ 83 (478)
....++++..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.+..+..+..+... ........
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWLVAA 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456777888899999988999999999888888888999999999999996 999988776554433221 11111000
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh-h
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC-S 162 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~ 162 (478)
.+.....+..++.+++.+...+...++..|.+|++. |++.+++.+...+ +
T Consensus 329 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~--------------------rg~~~g~~~~~~~~~ 379 (434)
T PRK15075 329 ---------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV--------------------RTAGFSLAYSLATAI 379 (434)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc--------------------cchheeHHHHHHHHH
Confidence 223333344455566777777777788999999887 8999998654444 4
Q ss_pred hhhHHhhhhhhhccccchh
Q 042477 163 GSLLGITLMSYIQDTFGWV 181 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~ 181 (478)
++.++|.+.+++.+..|++
T Consensus 380 ~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 380 FGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HhhhHHHHHHHHHHhcCCc
Confidence 5778999999998888854
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-11 Score=131.50 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=2.9
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc--cc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF--AW 84 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~--~~ 84 (478)
....|......+-+.+.++++.++.|++.+.+-++..+..++..|+++|. .|-|-+-+|.++..+|.++.++--+ ++
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 55666677777788889999999999999999999999999999999995 8888999999999999988774311 11
Q ss_pred c-----------------cC-------------------CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 042477 85 A-----------------ES-------------------PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNN 128 (478)
Q Consensus 85 ~-----------------~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 128 (478)
+ .| +........+++++.++.|+|.....+.-.+|+=|..++++
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 1 01 00001124688899999999999999999999999888777
Q ss_pred CCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc---------------------cc-chhHHHHH
Q 042477 129 DDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD---------------------TF-GWVIGFAI 186 (478)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~---------------------~~-g~~~~f~~ 186 (478)
-....++.+....+|.++|.++++...+ .. .||..|++
T Consensus 175 --------------------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli 234 (539)
T PF03137_consen 175 --------------------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLI 234 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHH
Confidence 6688888889999999999888875421 12 39999998
Q ss_pred HHHHHHHHHHHHHhhccccccc
Q 042477 187 PTIAMLTSTAFFSFASRFCKKK 208 (478)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~ 208 (478)
.+.+.++..+-++.+.+++++.
T Consensus 235 ~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 235 CGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHcCCccCCCc
Confidence 8887777666666665555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=106.05 Aligned_cols=359 Identities=16% Similarity=0.155 Sum_probs=211.9
Q ss_pred hhhhhhhhhhh---HHHHHHhhhhcCCChhh-HhhHHHhh----HHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhh
Q 042477 3 GKERFAFKGVA---SNLVTYLTDVMKMSNSS-AAKTVSSW----NGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGL 74 (478)
Q Consensus 3 ~~~~~~~~~~~---~~l~~yl~~~l~~~~~~-~~~~~~~~----~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~ 74 (478)
+++.++++... .....+.....+.+... .+...... .+...+.+++-|.++|++ |||..+...++...++.
T Consensus 28 fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~ 106 (463)
T KOG2816|consen 28 FLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPA 106 (463)
T ss_pred HHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhH
Confidence 55666666666 44445555444443332 33444443 467888999999999997 99999999999888888
Q ss_pred HHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhh
Q 042477 75 MALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFK 154 (478)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 154 (478)
....+. . +++++ ..=..-|.+.......++++|....++ |...++
T Consensus 107 ~~~~~~------------~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~--------------------R~~~~g 151 (463)
T KOG2816|consen 107 LCLLFQ------------G--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEE--------------------RSSSIG 151 (463)
T ss_pred HHHHHH------------H--HHHhh-hcccccchhhhhhhhhhheeeccchhH--------------------HHHHHH
Confidence 777776 2 22222 111223445667888899999888776 999999
Q ss_pred hHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcc
Q 042477 155 WWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLK 234 (478)
Q Consensus 155 ~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
+.......+..++|.+++++.+..|.-..|.++++...+......+..|+..+++.++ . ...+.
T Consensus 152 ll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~----~------------~~~~~ 215 (463)
T KOG2816|consen 152 LLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS----D------------ATLRE 215 (463)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc----c------------ccccc
Confidence 9999999999999999999999999999999999988888776666655432221111 0 00000
Q ss_pred cCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhh
Q 042477 235 NGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQG 314 (478)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (478)
........+|. .+.++... . ...+|..+.++.. ..........+..-...
T Consensus 216 ~~~~~~~~~~~----------------------~~~~~~~~--~-~~~~r~~l~l~l~--~~~~~~~~~~~~~~~~~--- 265 (463)
T KOG2816|consen 216 LTPGSLDSSHV----------------------ADAFQSLT--K-VGPDRLLLLLLLV--AFLSSLPEAGGASDVLL--- 265 (463)
T ss_pred cCCCcccchhh----------------------hhhhhhhc--c-cCCCccchHHHHH--HHHHHHHHhcCceeEEE---
Confidence 00000000000 00000000 0 0112222211111 11111111111110111
Q ss_pred ccccccCCCcccc-CchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042477 315 MAMKRNIGSRFKI-PPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETK 393 (478)
Q Consensus 315 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 393 (478)
...+...+ ++. ..+.+....+....+.+ .+..|+..+.. ...+.+..|++.-.+...+.++.+
T Consensus 266 ~yl~~~f~--w~~~~~s~~~~~~~~~~~i~~----l~~~~~l~~~l--------~~~~~i~lGl~~~~~~~~~~af~~-- 329 (463)
T KOG2816|consen 266 LYLKAKFG--WNKKEFSDLLSLVSILGIISQ----LLLLPLLSSIL--------GEKRLISLGLLSEFLQLLLFAFAT-- 329 (463)
T ss_pred EEEeeecC--cCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--------hhhhHhhHHHHHHHHHHHHHHHhc--
Confidence 12233322 221 22223333333333332 22233333322 222367888888888888888763
Q ss_pred HhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccc
Q 042477 394 RLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTSS 473 (478)
Q Consensus 394 ~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~~ 473 (478)
..|.+. .............|...+++...+.++.+|+.+++......+.+.+++.+-+.+...+..
T Consensus 330 -------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~ 395 (463)
T KOG2816|consen 330 -------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLD 395 (463)
T ss_pred -------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 223333 334445555778899999999999999999999999999999999999998888766553
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.6e-10 Score=114.21 Aligned_cols=163 Identities=10% Similarity=0.035 Sum_probs=116.7
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchH
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSS 96 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 96 (478)
..++.+++|++..+.++......+...++.+++|+++||+ |||+.+.++.++..++.+++...........+. ..+..
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 384 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTGSSK-SSGNV 384 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCCccc-chhHH
Confidence 3444467899998888888888899999999999999996 999999999888888877766321111000000 00222
Q ss_pred HHHHHHHH-HHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc
Q 042477 97 FLFLPLSL-ISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ 175 (478)
Q Consensus 97 ~~~~~~~l-~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~ 175 (478)
.+....+. .+.+. +..+....+..|.+|+++ |++.++..+...++|.+++|.+.+++.
T Consensus 385 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~--------------------~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 385 AIVFILLFIAFFAM-GWGPVPWVIVSEIFPLSL--------------------RPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred HHHHHHHHHHHHHc-cccCeehhhhhccCChHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 22332 334777788899999877 999999999999999999999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 176 DTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 176 ~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
++.+|++.|.+.+++.+++.++.++..
T Consensus 444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 444 ESIGVGGVFIFFGGLNVLGLIFVYFFL 470 (481)
T ss_pred HhcCccceehhHHHHHHHHHHHHheec
Confidence 888999999887776666655554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=114.37 Aligned_cols=168 Identities=8% Similarity=-0.021 Sum_probs=123.8
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHH-hhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVS-SWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~-~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
++.+......+.|+.+++|+++.+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++.+++.+........
T Consensus 236 ~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~~~-- 312 (491)
T PRK11010 236 LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLSIT-- 312 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 444555667888888889999999999875 44578899999999999996 99998877766555544332211100
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
..+...+.+..++..+..|...+...++..+..+++. +++.++..+...++|..
T Consensus 313 ------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~--------------------~~t~~gl~~s~~~lg~~ 366 (491)
T PRK11010 313 ------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF--------------------SATQFALLSALSAVGRV 366 (491)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------------------cHHHHHHHHHHHHHHHH
Confidence 0233334444555444445445667788888888777 77889999999999999
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
+++.++|++.+..||+..|.+.+++.+.+.++....++
T Consensus 367 ~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 367 YVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89889999999999999999888888887776666543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=107.04 Aligned_cols=170 Identities=12% Similarity=-0.045 Sum_probs=130.1
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
+|.+....+++|++++++.++.+++.....+.+...+..++||+++||+ |.+|++.+.....+++..++.+..+ ...
T Consensus 233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~~~--~~~ 309 (417)
T COG2223 233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLFLT--GFG 309 (417)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHcccc--ccc
Confidence 4567778899999999999999999999999999999999999999996 9999999988888888888776621 100
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
+ ..+...+++..+.+++..|.-+.....++...+|++ -+...++.....++|++.-
T Consensus 310 ~---~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~---------------------~G~v~G~vga~G~lGGf~l 365 (417)
T COG2223 310 H---GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE---------------------TGAVTGIVGAIGGLGGFFL 365 (417)
T ss_pred c---CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh---------------------hhHHHHHHHHhccccccch
Confidence 0 022333333333444555555555666666666653 6889999999999999888
Q ss_pred hhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhhccc
Q 042477 168 ITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFSFASRF 204 (478)
Q Consensus 168 ~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~ 204 (478)
|...+...+..| +...|.+.....+++.++.+....+
T Consensus 366 p~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877776 9999999888888887776665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=110.00 Aligned_cols=165 Identities=13% Similarity=0.045 Sum_probs=107.6
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhh-ccccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTS-TAFAW 84 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~-~~~~~ 84 (478)
.+.+|+...++|.|+++++|.+..+.+...+...+...++.++.|+++||+ |||+.+..+..+..+....... ....
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~- 333 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQNV- 333 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 566888889999999989999999999888888888888899999999996 9999887766554333322211 1000
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh-h
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS-G 163 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G 163 (478)
.+....+....+...+.+...+...++.+|.+|++. |++++++.+...++ +
T Consensus 334 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~--------------------r~t~~g~~~~~g~~~~ 385 (432)
T PRK10406 334 --------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV--------------------RALGVGLSYAVANALF 385 (432)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc--------------------cchhhhHHHHHHHHHH
Confidence 122221211122223333334556788999999888 99999998776654 2
Q ss_pred hhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 164 SLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+...|.+.+++.....|...++..++..+++.+..++
T Consensus 386 g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 386 GGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3447777776644323555565555555555444444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=111.42 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=116.9
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+..+++.......+.|+++.+|.++.+.++......+...++.++.|+++||+ |||+++..+..+..++..++......
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (471)
T PRK10504 272 AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFMLVALL 350 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhcccc
Confidence 33445544555678888878999999999999888888888889999999996 99999999998888877766554210
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
.+...+.+..++.|++.+...+....+..+.+|+++ ++..++++++..++|
T Consensus 351 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~~g 401 (471)
T PRK10504 351 ---------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL--------------------ASSGNSLLSMIMQLS 401 (471)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh--------------------ccchHHHHHHHHHHH
Confidence 223334456667788888888888899999988776 899999999999999
Q ss_pred hhHHhhhhhhhccccch
Q 042477 164 SLLGITLMSYIQDTFGW 180 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~g~ 180 (478)
..+|+.+++.+.+..|+
T Consensus 402 ~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 402 MSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999987665555
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=110.16 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=137.5
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchh--HHHHHHHHHHHHhhHHhhhcccccc
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH--STILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~--~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
+...+.....+|.++++|++..+...+.....+...+++++.|++.||+ |.| +++++++++..+-.+.-.+.-. +.
T Consensus 296 g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~~~i~~~g~~G~~-~~ 373 (477)
T PF11700_consen 296 GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILWIIIPLYGLFGFW-PS 373 (477)
T ss_pred HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHHHHhh-hc
Confidence 4556667788999999999999999999999999999999999999996 999 8988888777443333332000 00
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
..+ ..+.+.+++.-++.|+..|..++..-++.+++.|+++ .+.+|+.+.+..-..++
T Consensus 374 ~~g---~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~--------------------e~efFgly~i~gk~ss~ 430 (477)
T PF11700_consen 374 FFG---LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR--------------------EAEFFGLYAITGKASSW 430 (477)
T ss_pred ccC---cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch--------------------hhHHHHHHHHHHHHHHH
Confidence 000 1567778888889999999999999999999999987 78999999999999999
Q ss_pred HHhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhh
Q 042477 166 LGITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 166 ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
+||++.+.+.+..| .|+++....++++++.++++..
T Consensus 431 lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 431 LGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999988776 8889888877777777776553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=112.43 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=112.5
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHH---hhHHhhhcccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVL---GLMALTSTAFA 83 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~i---g~~l~~~~~~~ 83 (478)
..++++..++|.|+++..|+++.++++....+.+...++.+++|+++||+ |+++....+..+..+ +...+.....
T Consensus 265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (438)
T TIGR00712 265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWMNPA- 342 (438)
T ss_pred HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHhcCC-
Confidence 44567888899999988999999999999999999999999999999996 755433333322222 2111111100
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
.+.....+..++.|++..+..........|.+|+++ |+++.++.+...++|
T Consensus 343 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~g 393 (438)
T TIGR00712 343 ---------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA--------------------AGTAAGFTGLFGYLG 393 (438)
T ss_pred ---------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh--------------------eeeehhhhchHHHhh
Confidence 122333344444454433322233346778888777 999999998888887
Q ss_pred h-hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 164 S-LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 164 ~-~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
+ ++||.+.|++.++.||...|.+.....+++.+..++.
T Consensus 394 g~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 394 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred hhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5 6899999999998999999987777666665554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.3e-09 Score=106.42 Aligned_cols=158 Identities=16% Similarity=-0.063 Sum_probs=119.7
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
+......+.|+.+++|.++.+.++......++..++.++.|+++||+ |||+.+.++..+..++..+........
T Consensus 232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~~~----- 305 (406)
T PRK15402 232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVIS----- 305 (406)
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 34444578888888999999999887777778888999999999996 999999999888888887776642110
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
+.+...++++.++.|+|.+...+.......+..| ++ |++..+.+++...+|..+|+.
T Consensus 306 --~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~--------------------~g~~~~~~~~~~~~~~~~g~~ 362 (406)
T PRK15402 306 --SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS--------------------KGTVSAAMGMLSMLIFTVGIE 362 (406)
T ss_pred --cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc--------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 0345667788888999998877766665544333 44 899999999999999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHH
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~~~ 196 (478)
+++.+.+..++.......++..++..+
T Consensus 363 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 363 LSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 999988777766655554444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-09 Score=104.72 Aligned_cols=166 Identities=18% Similarity=0.132 Sum_probs=136.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+..-+.|...+++.+|+++..|++.+..++++-.+.++..++..++|+++|| +.|+++.....+.++..+.+.+..
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~-- 297 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTG-- 297 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhc--
Confidence 3445678888999999999999999999999999999999999999999998 888999888888888888777773
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
.+.+...+..++.|++.+........-.++..| +. ++.+.+++....|+|
T Consensus 298 ---------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~--------------------~~~a~sl~~aa~nlg 347 (394)
T COG2814 298 ---------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-DA--------------------ADLAGSLNVAAFNLG 347 (394)
T ss_pred ---------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc--------------------hHHHHHHHHHHHHHH
Confidence 455666666666677666555555555555222 33 789999999999999
Q ss_pred hhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 164 SLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
..+|..++|.+.+++|+....++.+++.+++..+.+...+
T Consensus 348 ia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 348 IALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988888877766544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-09 Score=105.83 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=122.5
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
..+.+...+++.|+. +.|.++.+.+.+.+...+...+..++.|++.||+ |+|+.+..+.+...++.+++...
T Consensus 219 ~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~------ 290 (382)
T PRK11128 219 GSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRWGLMGST------ 290 (382)
T ss_pred HHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhh------
Confidence 445566778889995 5899999999998888888888999999999996 99999999999888887777666
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH-HHHhhhhh
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY-FGVCSGSL 165 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~ 165 (478)
++.+.+++..++.|++.+...+....+..+. ++++ +++.++.+. ....+|..
T Consensus 291 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~~~~~g~~ 343 (382)
T PRK11128 291 ------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE--------------------VIRLQALYSALAMGGSIA 343 (382)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh--------------------hHHHHHHHHHHHHHHHHH
Confidence 6678888899999999998888888887776 4443 677888765 55677889
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAMLTST 195 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~ 195 (478)
+||.++|++.+.+|+. .|+..+++.++++
T Consensus 344 ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 344 IMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 9999999999988874 5555555444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=107.82 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=119.8
Q ss_pred hhhhhhh-HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 7 FAFKGVA-SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 7 ~~~~~~~-~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
+.+.+.. ...+.|.++.+|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++..+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~----- 297 (365)
T TIGR00900 224 LVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLAILVVGLT----- 297 (365)
T ss_pred HHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHhh-----
Confidence 4444455 5677777777999999999999999999999999999999996 99999998887777777766655
Q ss_pred cCCCCCcc-chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 86 ESPANTTS-CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
. +.+.+++..++.|++.+...+...+++.|.+|+++ |++.++.++...++|.
T Consensus 298 -------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~~~~ 350 (365)
T TIGR00900 298 -------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL--------------------LGRVFGAQFSLSHAAW 350 (365)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHHHHH
Confidence 3 36677788889999999999999999999999877 9999999999999999
Q ss_pred hHHhhhhhhhccccc
Q 042477 165 LLGITLMSYIQDTFG 179 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g 179 (478)
.++|.++|++.+++|
T Consensus 351 ~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 351 PLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999887653
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.2e-09 Score=107.47 Aligned_cols=142 Identities=13% Similarity=0.013 Sum_probs=106.4
Q ss_pred hhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCC
Q 042477 12 VASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANT 91 (478)
Q Consensus 12 ~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~ 91 (478)
+..+++.|+++ .|.++.+.+...+...++..++.++.|+++||+ |||+.+..+.++..++.+++.....
T Consensus 250 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~--------- 318 (426)
T PRK12307 250 IFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ--------- 318 (426)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 56678888875 699999999988888899999999999999996 9999999888877666554443310
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 92 TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 92 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
.....+.+..+..+.+..+..+..+.++.|.+|++. |+++++..+...++|+.++|.+.
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~~~~~gp~~~ 377 (426)
T PRK12307 319 -DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV--------------------RGLGTGLIYNLAATSGTFNSMAA 377 (426)
T ss_pred -ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH--------------------HhhhhhHHHHHHhHHHHHHHHHH
Confidence 122222222222223333444567788899999877 99999999999999999999999
Q ss_pred hhhccccchhHHHH
Q 042477 172 SYIQDTFGWVIGFA 185 (478)
Q Consensus 172 ~~i~~~~g~~~~f~ 185 (478)
+++.+..|+.....
T Consensus 378 g~l~~~~g~~~~~~ 391 (426)
T PRK12307 378 TWLGITMGLGAALT 391 (426)
T ss_pred HHHHHcccHHHHHH
Confidence 99999888765433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-09 Score=108.93 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=106.2
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhH-------HHHHHHHHHHHhhHHhhhccc
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHS-------TILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~-------~i~~~~~~~~ig~~l~~~~~~ 82 (478)
+++..+++.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+ ......++..+..+++...
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-- 345 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWLGRA-- 345 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHhccc--
Confidence 44556788999888999999999999999999999999999999996 8762 2222222222222222222
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+.....+..++.+++.+...+...++..+..| ++ ++...++.+...++
T Consensus 346 ----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~--------------------~g~~~g~~~~~g~l 394 (476)
T PLN00028 346 ----------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS--------------------LGVISGLTGAGGNV 394 (476)
T ss_pred ----------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh--------------------chhhhhhhhccccH
Confidence 334444455555666655555555566666544 33 88999998777777
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
|+.+++.+.+ ..+..+|+.+|.+.+++.+++.++.++.+
T Consensus 395 g~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 395 GAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 7777766543 22345799999998887777776665554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=108.73 Aligned_cols=154 Identities=11% Similarity=0.005 Sum_probs=106.3
Q ss_pred hhhhhhhhhhHHHHHHhhh-hcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHH-HHHHHHHHHHhhHHhhhcc
Q 042477 4 KERFAFKGVASNLVTYLTD-VMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHST-ILAFSFIYVLGLMALTSTA 81 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~-i~~~~~~~~ig~~l~~~~~ 81 (478)
+....++++..++|.|+++ ..|.++.+++.......++..++.+++|+++||+ |||+. +.....+..++.++....
T Consensus 253 ~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~~~~~~~- 330 (412)
T TIGR02332 253 CLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGWLLASAT- 330 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHHHHHHhc-
Confidence 3445678888999999976 3577888899999999999999999999999996 87774 344444444443222211
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
.+......+..+.++|.....+.......|.+|+++ |++++++.+...+
T Consensus 331 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------------~~~a~g~~~~~~~ 379 (412)
T TIGR02332 331 -----------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA--------------------RAIAIAVINATGN 379 (412)
T ss_pred -----------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH--------------------HHHHHHHHHHhhh
Confidence 111222222223333433333334444456677666 9999999999999
Q ss_pred hhhhHHhhhhhhhccccc-hhHHHHHHHHH
Q 042477 162 SGSLLGITLMSYIQDTFG-WVIGFAIPTIA 190 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~~g-~~~~f~~~~~~ 190 (478)
+|..++|.+.+.+.+..| |+..|.+.++.
T Consensus 380 ~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 380 IGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999988774 99988766553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.6e-09 Score=105.35 Aligned_cols=165 Identities=12% Similarity=-0.062 Sum_probs=119.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHH-HHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNG-LTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
+.+.+......+.+.|+++ +|+++.+.+++...... ...++.+++|++.||+ |+|+.+..+..+..+..+.......
T Consensus 219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~ 296 (390)
T TIGR02718 219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALLWFAQAA 296 (390)
T ss_pred HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677778889975 79999999999887764 5567789999999996 9999998877765343332221111
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCC-CCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDN-NNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
.+. ..+....+....+.+++.|...+...+...+..++ +. +++.++..+...+
T Consensus 297 ~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~ 350 (390)
T TIGR02718 297 FWL------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ--------------------AGTDVTAVQSTRD 350 (390)
T ss_pred ccc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--------------------hHHHHHHHHHHHH
Confidence 000 02233334444455666777777777777777665 44 8999999999999
Q ss_pred hhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 042477 162 SGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~ 196 (478)
+|..+||.++|++.+..||+..|.+.+++.+++.+
T Consensus 351 lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 351 LGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888776655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.2e-09 Score=108.27 Aligned_cols=155 Identities=9% Similarity=0.039 Sum_probs=112.1
Q ss_pred HhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHH
Q 042477 19 YLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFL 98 (478)
Q Consensus 19 yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (478)
++.+++|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.+++......+ ......
T Consensus 296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~--------~~~~~~ 366 (479)
T PRK10077 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ--------APGIVA 366 (479)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC--------cccHHH
Confidence 33357888877777777777788889999999999996 999999999999999887776442100 111223
Q ss_pred HHHHHHHHHhccc-cccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh-----
Q 042477 99 FLPLSLISLGLAG-YNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS----- 172 (478)
Q Consensus 99 ~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~----- 172 (478)
..+.++.+.+.+. ..|+..+++.|.+|+++ |++++++.+...++|..+++.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--------------------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~ 426 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI--------------------RGKALAIAVAAQWIANYFVSWTFPMMDKN 426 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhH--------------------HHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 3344444444443 34788899999999877 999999999999999988865554
Q ss_pred -hhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 173 -YIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 173 -~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
++.+.++|+..|.+.++..+++.++.++..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
T PRK10077 427 SWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 457 (479)
T ss_pred cchhhhccCccHHHHHHHHHHHHHHHHHhcc
Confidence 444678898888887766566555544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.1e-09 Score=105.74 Aligned_cols=155 Identities=9% Similarity=0.080 Sum_probs=119.7
Q ss_pred hhhHHHHHHhhhhc---CCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 11 GVASNLVTYLTDVM---KMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 11 ~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
.....++.|+++.+ +.+....+...+...+...++.++.|++.||+ |||+.+.++.++..++..+...+
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~~~------- 304 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSSFA------- 304 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhc-------
Confidence 33345678887665 44556678888888888888999999999996 99999999999888888776665
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh-HHHHHhhhhhH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW-WYFGVCSGSLL 166 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~i 166 (478)
.+.+.+++..++.|++.+........+..+..+++. +++..+. ++...++|+.+
T Consensus 305 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~at~~~~~~~~~~~lg~~~ 359 (396)
T TIGR00882 305 -----TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL--------------------SATIYLIGFQFAKQLAMIF 359 (396)
T ss_pred -----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce--------------------EEEeehHHHHHHHHHHHHH
Confidence 566777788888888876555555555666666544 6666655 56788999999
Q ss_pred HhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042477 167 GITLMSYIQDTFGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 167 g~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~ 198 (478)
++.++|++.+..||+..|.+.+++.++..++.
T Consensus 360 ~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 360 LSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999998999999999888776665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-07 Score=96.13 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=119.1
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc--cc--hhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY--WD--RHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~--~G--r~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
.....|+++++|+++++.....+...+. ...-++.|.++|.+ .| ||.-++++.++..++.+.+......
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------ 82 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------ 82 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc------
Confidence 3456788899999999988766554443 35567889999986 23 5555666777666555555544210
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
..+.....+..++..+|....-...-+++.|...++... ++...++.+....+|++++..
T Consensus 83 --~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~------------------~g~lqS~~~~~~~~G~lv~~~ 142 (433)
T PF03092_consen 83 --ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES------------------RGDLQSFVWGVRSVGSLVGSL 142 (433)
T ss_pred --cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 034455566667788898888889999999987665422 889999999999999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
++|.+.+..+++..|.+.+++.++..+..++..+
T Consensus 143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 143 LSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998887766665544444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=103.95 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=111.7
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
+....+++.|+++.+|+++.+.+...+...++..++.++.|+++||+ |+|+.+..+..+..++.+++....
T Consensus 216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~~-------- 286 (382)
T PRK10091 216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFFG-------- 286 (382)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHHH--------
Confidence 33445667888888999999999999999999999999999999996 999999999888888876654331
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccC-CCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQM-DNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 168 (478)
++.+...+..++.++|.++..+.......+.. +++. ++.. ..+...++|..+||
T Consensus 287 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------------~~~~--~~~~~~~~g~~~Gp 341 (382)
T PRK10091 287 ---GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL--------------------LGAA--GGQIAFNLGSAIGA 341 (382)
T ss_pred ---hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH--------------------HHHH--HHHHHHHHHHHHHH
Confidence 23344455555566665554444443333333 3222 3433 23566789999999
Q ss_pred hhhhhhccc-cchhHHHHHHHHHHHHHHHHHHh
Q 042477 169 TLMSYIQDT-FGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 169 ~~~~~i~~~-~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.++|++.+. .+|+..|.+.+....+.......
T Consensus 342 ~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 342 YCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 999998874 68999999887766665544433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=108.39 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=140.7
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
....+...+|.+.++.+|.++...|++.+.+.++..++.++.+++.+|+ ++++.+..+.++.+++.+.++++
T Consensus 233 ~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~------- 304 (524)
T PF05977_consen 233 FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALS------- 304 (524)
T ss_pred hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcc-------
Confidence 3344556688899999999999999999999999999999999999995 99999999999999988888888
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
.+.+...+..++.|++.....+...+.+....|++. |+|.++.+....+.+..+|
T Consensus 305 -----~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~--------------------~GRv~si~~~~~~g~~~lG 359 (524)
T PF05977_consen 305 -----PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV--------------------RGRVFSIYQMVFFGGMPLG 359 (524)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--------------------HhHHHHHHHHHHHHHHHHH
Confidence 677888888889999999988889999999999888 9999999999999999999
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 168 ITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 168 ~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
..+.|++.+.+|-+..+.++++..+++.++...
T Consensus 360 sll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 360 SLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888766666555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-09 Score=107.77 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=112.2
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
++++......+.|++..++ ++.+.+++.....+...++.++.|+++||+ |||+++..+.++..++.++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~----- 308 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGYLIFFFAG----- 308 (437)
T ss_pred HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 3444333344455555555 556677777777888999999999999996 999999999988888877766541
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
.+...+++..++.+++.+...+...++++|..|.++-+ + .++.++..++.+++..++|..+
T Consensus 309 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~G~~~~~~~~~~~~g~~l 369 (437)
T TIGR00792 309 ------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWK------------T-GVRAEGLVYSVRTFVRKLGQAL 369 (437)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh------------c-CccchHHHHHHHHHHHHHHHHH
Confidence 34456667777889999998999999999988754310 0 1112789999999999999999
Q ss_pred Hhhhhhhhccccchh
Q 042477 167 GITLMSYIQDTFGWV 181 (478)
Q Consensus 167 g~~~~~~i~~~~g~~ 181 (478)
|+.+.|++.+..||.
T Consensus 370 g~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 370 AGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999987766663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=100.32 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=114.9
Q ss_pred hhhHHHHHHhhhh--cCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCC
Q 042477 11 GVASNLVTYLTDV--MKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESP 88 (478)
Q Consensus 11 ~~~~~l~~yl~~~--l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~ 88 (478)
++..+++.|+.+. +|+++.+.+...+.+..+..++.+++++++||+ |+||++.++..+.+++.++....
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~~~~l~~~~-------- 228 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVLLSIGAALT-------- 228 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 4566799999754 799999999999999999999999999999996 99999999888888877555544
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh
Q 042477 89 ANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 168 (478)
++.. ...+.++.|++.+...|...+...+.+|++. +++.+.. ....+|++++|
T Consensus 229 ----~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~---------------------~~asai~-~~~~~Gg~i~P 281 (310)
T TIGR01272 229 ----HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT---------------------SQGSGIL-CLAIVGGAIVP 281 (310)
T ss_pred ----CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---------------------hhhHHHH-HHHHhcchHHH
Confidence 2222 2235557899999999999999999887643 2333343 46679999999
Q ss_pred hhhhhhccccchhHHHHHHHHH
Q 042477 169 TLMSYIQDTFGWVIGFAIPTIA 190 (478)
Q Consensus 169 ~~~~~i~~~~g~~~~f~~~~~~ 190 (478)
.+.|.+.+..|.+.+|+++.++
T Consensus 282 ~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 282 LLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHhccchHHHHHHHHH
Confidence 9999999989999998866554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-09 Score=109.51 Aligned_cols=143 Identities=11% Similarity=-0.007 Sum_probs=120.6
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+..+++++...+++.|+++.+|+++.+++.....+.+...++.++.|++.||+ |||+.+..+.++..++.+++......
T Consensus 270 ~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~~~l~~~~~~ 348 (495)
T PRK14995 270 TAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSFYGLAMTDFS 348 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33456777778899999999999999999999999999999999999999996 99999999998888887766543210
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
.+.+...+..++.|+|.|...+.....+.+..|+++ ++.+.+.++...++|
T Consensus 349 ---------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~lG 399 (495)
T PRK14995 349 ---------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK--------------------AAAAGAIETMAYELG 399 (495)
T ss_pred ---------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh--------------------cchHHHHHHHHHHHH
Confidence 334455667888999999988888888889888877 899999999999999
Q ss_pred hhHHhhhhhhhcc
Q 042477 164 SLLGITLMSYIQD 176 (478)
Q Consensus 164 ~~ig~~~~~~i~~ 176 (478)
..+|+.+.+.+.+
T Consensus 400 ~~~G~ai~g~i~~ 412 (495)
T PRK14995 400 AGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=104.47 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=119.8
Q ss_pred hhhhhhhHHHHHHh-hhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 7 FAFKGVASNLVTYL-TDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 7 ~~~~~~~~~l~~yl-~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
...++...+++.|+ ++.+|.++.+++.....+.++..++.+++|++.||+ |||+++..+.++..++.++....
T Consensus 272 ~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~----- 345 (438)
T PRK10133 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFA----- 345 (438)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 34445566788886 567899999999999999999999999999999996 99999999988877776665554
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+. ..+.+..+.|+|.+...|+..+...+.++++. +.+.+.... ..+|+.
T Consensus 346 -------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~---------------------~~as~l~~~-~~~g~~ 395 (438)
T PRK10133 346 -------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT---------------------KYGSSFIVM-TIIGGG 395 (438)
T ss_pred -------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh---------------------ccchhHHhH-Hhccch
Confidence 222 22456677899999999999999999987542 233333332 336788
Q ss_pred HHhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 042477 166 LGITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 166 ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~ 199 (478)
++|.+.|++.+..| -+..|+++.++.+.......
T Consensus 396 ~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~~ 430 (438)
T PRK10133 396 IVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 88899999988887 78888887776555544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-09 Score=108.67 Aligned_cols=144 Identities=14% Similarity=0.112 Sum_probs=120.3
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
..+.+++....+|.|+++.+|+++.++++......++..++.++.|++.||+ |||+.+..+..+..++..+......+
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~~~~~~~~~~- 344 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGFYWRAFTFTP- 344 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 3456777788899999999999999999999999999999999999999996 99999999999888888776632111
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
..+.+.+....++.|+|.+...+.......+.+|+++ |+++.+.++...++|+
T Consensus 345 -------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~~g~ 397 (485)
T TIGR00711 345 -------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK--------------------IARGSSLSNFTRQLGG 397 (485)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--------------------HhHHHHHHHHHHHHHH
Confidence 1345566677788999999888777777788888776 9999999999999999
Q ss_pred hHHhhhhhhhccc
Q 042477 165 LLGITLMSYIQDT 177 (478)
Q Consensus 165 ~ig~~~~~~i~~~ 177 (478)
.+|+.+.+.+.++
T Consensus 398 ~ig~~i~g~~~~~ 410 (485)
T TIGR00711 398 SIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=103.58 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=119.7
Q ss_pred hhhhhHHHHHHhhh--hcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 9 FKGVASNLVTYLTD--VMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 9 ~~~~~~~l~~yl~~--~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
+......++.|+.. +.+.+....+.+...+........++.|++.||+ ++|+.+..+..+..++..++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~----- 295 (395)
T PRK10054 222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIFSG----- 295 (395)
T ss_pred HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHcc-----
Confidence 33344456667653 3455566677888887777777788999999996 999999999988888887776541
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
++.+.+.+..++.++|.+...|...+++.+..|++. |++.++... ..++|..+
T Consensus 296 ------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~--------------------~~~~~~~~~-~~~~G~~~ 348 (395)
T PRK10054 296 ------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM--------------------KASYFSAQS-LGWLGAAI 348 (395)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc--------------------ceehHhHHH-HHHHHHHH
Confidence 345566677888999998888998999999998776 788887644 56689999
Q ss_pred HhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042477 167 GITLMSYIQDTFGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 167 g~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~ 198 (478)
||.++|++.++.|....|.+.+...++..++.
T Consensus 349 Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 349 NPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 99999999999998888877655544444443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=103.59 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=113.3
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
...+|.|+++..+ ++.+.+++.+...+.......+.+++.||.++.++.+..+.++..++.+++...
T Consensus 228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------ 294 (400)
T PRK11646 228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------ 294 (400)
T ss_pred HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------
Confidence 4467888876555 678888888777766665555556666654477777888888888887777666
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
++...+.+..++.++|.+...|...+++.|..|+++ |++.++.++...++|..+||.++|
T Consensus 295 ~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 295 SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA--------------------RGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc--------------------chhhhhHHHHHHHHHHHhcccchH
Confidence 455666667778888988888999999999999877 999999999999999999999999
Q ss_pred hhcccc---c-hhHHHHHHHHHHHHHHHH
Q 042477 173 YIQDTF---G-WVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 173 ~i~~~~---g-~~~~f~~~~~~~~~~~~~ 197 (478)
++.++. + ....|....++.++..+.
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 355 WLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 997753 2 345555544444444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-09 Score=103.89 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=107.7
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHH--HHHHHhhHHhhhccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFS--FIYVLGLMALTSTAFAW 84 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~--~~~~ig~~l~~~~~~~~ 84 (478)
....++..+++.|+++.+|.++.+.+...+.+.+...++.++.|+++||..+||+...... ....++.........
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 307 (379)
T TIGR00881 230 VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPA-- 307 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcc--
Confidence 3445666778999999999999999999999999999999999999998524444332211 112222222222100
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.+.....+..++.|+...+..+....+..|.+|+++ |++++++++...++|.
T Consensus 308 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~g~ 359 (379)
T TIGR00881 308 --------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA--------------------AGTAAGFVGFFAYLGG 359 (379)
T ss_pred --------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch--------------------hHHHHHHHHHhhhhhh
Confidence 234445555566666555555666778899999877 9999999999999999
Q ss_pred hHHhhhhhhhccccchhHHH
Q 042477 165 LLGITLMSYIQDTFGWVIGF 184 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f 184 (478)
.++|.+.|++.++.||+..|
T Consensus 360 ~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 360 ILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhhhHHHHHHhhcccccC
Confidence 99999999999999998754
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=103.55 Aligned_cols=135 Identities=18% Similarity=0.081 Sum_probs=106.9
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
.+.++++..+++ |+.+++|.++.+.+...+...++..++.++.|+++||+ |||+.+....+......++....
T Consensus 263 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~----- 335 (398)
T TIGR00895 263 LVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVLVGSTL----- 335 (398)
T ss_pred HHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHh-----
Confidence 345555666676 66678999999999999999999999999999999996 99955444433333333322212
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+....++..++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..
T Consensus 336 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~g~~ 388 (398)
T TIGR00895 336 -------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI--------------------RATGVGWAIGIGRLGAI 388 (398)
T ss_pred -------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH--------------------HHHHHHHHHHHHHHHHH
Confidence 455666777888999999999999999999999877 99999999999999999
Q ss_pred HHhhhhhhh
Q 042477 166 LGITLMSYI 174 (478)
Q Consensus 166 ig~~~~~~i 174 (478)
+||.++|++
T Consensus 389 ~g~~~~G~l 397 (398)
T TIGR00895 389 IGPILAGYL 397 (398)
T ss_pred HHHHhHHhc
Confidence 999998875
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=99.25 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=109.8
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
.+++.....+.|+++++|.++.+.+.+.....+...++.++.|++.||+ |||+.+..+..+..++.+++......+.
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 297 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEITAILGL-- 297 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 3455556678888889999999999999999999999999999999996 9999999998888887777665422100
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh-hhhH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS-GSLL 166 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~i 166 (478)
.....+++..++.|+|.+...+.......|..| ++ +++..+.++..... |+..
T Consensus 298 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~--------------------~g~~~~~~~~~~~~~g~i~ 351 (385)
T TIGR00710 298 -----GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV--------------------AGTASALFGTLRLVLGAIV 351 (385)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc--------------------chHHHHHHHHHHHHHHHHH
Confidence 233455556677889999888888888888776 34 78889987776655 5554
Q ss_pred HhhhhhhhccccchhHHHHHH
Q 042477 167 GITLMSYIQDTFGWVIGFAIP 187 (478)
Q Consensus 167 g~~~~~~i~~~~g~~~~f~~~ 187 (478)
++. .+.+.+..+|...+...
T Consensus 352 ~~~-~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 352 GYL-VSLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHH-HHhccccChHHHHHHHH
Confidence 544 44555545555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=102.95 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=112.4
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHH--------HHHHHHHHHHhhH
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHST--------ILAFSFIYVLGLM 75 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~--------i~~~~~~~~ig~~ 75 (478)
+....++....++|.|+++.+|.+..+.++..+...++..++.+++|+++||. ++|+. +..+......+..
T Consensus 272 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (465)
T TIGR00894 272 GHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIFNGIGGLGPGIF 350 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44456777788999999999999999999999999999999999999999995 65432 1111111111111
Q ss_pred HhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh
Q 042477 76 ALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW 155 (478)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 155 (478)
++..... ..+....++...+.+.+.+...++......|..|+ . ++...++
T Consensus 351 ~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~--------------------~g~~~g~ 400 (465)
T TIGR00894 351 AYALPYL---------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F--------------------LGFIKGI 400 (465)
T ss_pred HHHHHHc---------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H--------------------HHHHHHH
Confidence 1111100 02233344444455555555555555555565553 3 8999999
Q ss_pred HHHHHhhhhhHHhhhhhhhccc---cchhHHHHHHHHHHHHHHHHHHh
Q 042477 156 WYFGVCSGSLLGITLMSYIQDT---FGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 156 ~~~~~~~G~~ig~~~~~~i~~~---~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
.+...++|+.++|.+.+++.+. .+|...|.+.++..+++.++..+
T Consensus 401 ~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 401 TGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999999999999988754 34888888888777776655443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=94.51 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=119.6
Q ss_pred hhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHH-HHHhhHHhhhcccccccC
Q 042477 9 FKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFI-YVLGLMALTSTAFAWAES 87 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~-~~ig~~l~~~~~~~~~~~ 87 (478)
++-....-++++++.+|+|+..++.+.+.......+.+++.|.++||+ ||+-....+..+ ..+++..+.++-.
T Consensus 280 ~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~Ft~l----- 353 (459)
T KOG4686|consen 280 WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLFFTFL----- 353 (459)
T ss_pred HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHHhhhc-----
Confidence 333444567899999999999999999999999999999999999997 998876665544 5557777776632
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
.=+++..++|+.......+..+.++...|+++ .+++++..+...|+|-.+-
T Consensus 354 ---------sPy~~m~~lGLsysllAcslWP~va~~vpE~q--------------------LGTaygf~qsIqNLgla~i 404 (459)
T KOG4686|consen 354 ---------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ--------------------LGTAYGFIQSIQNLGLAFI 404 (459)
T ss_pred ---------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH--------------------hcchHHHHHHHHhhhhhHH
Confidence 22355556777777766667788888899887 9999999999999999999
Q ss_pred hhhhhhhccccc---hhHHHHHHHH-HHHHHHHHHHhh
Q 042477 168 ITLMSYIQDTFG---WVIGFAIPTI-AMLTSTAFFSFA 201 (478)
Q Consensus 168 ~~~~~~i~~~~g---~~~~f~~~~~-~~~~~~~~~~~~ 201 (478)
|+++|.+.++-| |--.|.+... ..+++..+++..
T Consensus 405 ~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 405 PIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 999999987644 4345554444 344444444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.1e-07 Score=88.45 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=108.7
Q ss_pred hhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHH
Q 042477 22 DVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLP 101 (478)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (478)
+++|++..|.+.+.........+..++.|.++||+ |||+.-+..++++.++++.- .+ +++..++++
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k-~~------------~~~~~L~~G 127 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTK-HS------------SNYPVLLLG 127 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hc------------cccHHHHHH
Confidence 57899999999999999999999999999999996 99999999999999988643 33 578999999
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH-HHHhhhhhHHhhhhhhhccccch
Q 042477 102 LSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY-FGVCSGSLLGITLMSYIQDTFGW 180 (478)
Q Consensus 102 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~ig~~~~~~i~~~~g~ 180 (478)
|++-|+++.....+..+.....-.++.-. +..++.-++... +...+-.+.+..++-++.+..+.
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~---------------~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~ 192 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFP---------------QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF 192 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence 99999999999888888765543322211 001333333222 11222233333444455555544
Q ss_pred --hHHHHHHHHHHHHHHHHHHhhcc
Q 042477 181 --VIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 181 --~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
..+|..+.++..++.+++...++
T Consensus 193 g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 193 GPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCcchHHHHHHHHHHHHHHHHhccc
Confidence 78999988888877776655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-08 Score=98.77 Aligned_cols=153 Identities=9% Similarity=-0.058 Sum_probs=113.6
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
++++...++++++.+++|+++.+.+.+...+.++..++.++.|++.||. +|+..+....+....+.++....
T Consensus 231 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~~~l~~~~------- 302 (394)
T PRK10213 231 GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSALVLTLWG------- 302 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHh-------
Confidence 3445555654444467899999999999999999999999999999994 55444443333333333333333
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
.+.+.+.+..++.|++.+...+...+++.+..|+ + +++..+.+....++|..+|
T Consensus 303 -----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~lg~~~G 356 (394)
T PRK10213 303 -----SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q--------------------AEKAGSIQVAVIQLANTCG 356 (394)
T ss_pred -----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c--------------------HHHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999889888773 3 4566677777889999999
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHH
Q 042477 168 ITLMSYIQDTFGWVIGFAIPTIAMLTS 194 (478)
Q Consensus 168 ~~~~~~i~~~~g~~~~f~~~~~~~~~~ 194 (478)
+.++|++.+..|++..|...++..++.
T Consensus 357 ~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 357 AAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 999999999999999888877654443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=102.61 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=110.8
Q ss_pred hhhhhhhhHHHHHHhhh-hcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccch-hHHHHHHHHHHHHhhHHh-hhccc
Q 042477 6 RFAFKGVASNLVTYLTD-VMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDR-HSTILAFSFIYVLGLMAL-TSTAF 82 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-~~~i~~~~~~~~ig~~l~-~~~~~ 82 (478)
.+.+.-+....-.|+++ +.+.+++..|+++++..++..++++.-|+.+.|. |+ |+-++.|.++.++|.++. ++.-.
T Consensus 47 ~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ii~~~g~llY~~l~~~ 125 (488)
T KOG2325|consen 47 AVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFLIAIIGNLLYLALAYV 125 (488)
T ss_pred hhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445556678864 4777788899999999999999999999999996 76 888999999999999998 54433
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
++ ...+.++++|++.|+|.|.. ...-++++|....++ |.++++....+..+
T Consensus 126 ~~--------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d--------------------R~rA~a~~~~~~vl 176 (488)
T KOG2325|consen 126 PN--------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED--------------------RPRAFAATSGGFVL 176 (488)
T ss_pred cc--------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc--------------------hHHHHHHhhhHHHH
Confidence 21 37889999999999998765 677889999777666 88999988877778
Q ss_pred hhhHHhhhhhhh
Q 042477 163 GSLLGITLMSYI 174 (478)
Q Consensus 163 G~~ig~~~~~~i 174 (478)
|..+||.+...+
T Consensus 177 g~ilGp~~q~~f 188 (488)
T KOG2325|consen 177 GIILGPTIQLAF 188 (488)
T ss_pred HHHHhHHHHHHH
Confidence 888887776543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=105.02 Aligned_cols=162 Identities=17% Similarity=0.065 Sum_probs=105.8
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhh------------HHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHh
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAK------------TVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLG 73 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~------------~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig 73 (478)
.+.+|++..++|.+++ .+|+++.+.+. ......++..++.+++++++||+ |||++++++..+..++
T Consensus 301 ~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~~~ 378 (502)
T TIGR00887 301 DIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFILTVL 378 (502)
T ss_pred HHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHHHH
Confidence 4567788778888885 67876543221 12223344555778899999996 9999999888887777
Q ss_pred hHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhh
Q 042477 74 LMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFF 153 (478)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 153 (478)
.+++.+..... .+...+.+..+...++..+..+....+.+|.+|.+. |++++
T Consensus 379 ~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~--------------------R~~~~ 430 (502)
T TIGR00887 379 FFVLGFAYNHL--------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY--------------------RSTAH 430 (502)
T ss_pred HHHHHHHHHhc--------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH--------------------HHHHH
Confidence 66665441100 111111111111222223344566777899999888 99999
Q ss_pred hhHHHHHhhhhhHHhhhhhhhccc----------cchhHHHHHHHHHHHHHHHH
Q 042477 154 KWWYFGVCSGSLLGITLMSYIQDT----------FGWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 154 ~~~~~~~~~G~~ig~~~~~~i~~~----------~g~~~~f~~~~~~~~~~~~~ 197 (478)
++.+...++|++++|.+.+++.+. .++...|.+.++..+++.+.
T Consensus 431 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999988763 34556666666555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=101.17 Aligned_cols=142 Identities=14% Similarity=0.096 Sum_probs=110.7
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
..+.++++..++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+-+||+.+.++..+.+++.+.+...
T Consensus 209 ~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---- 283 (355)
T TIGR00896 209 QSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA---- 283 (355)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh----
Confidence 345677778889999975 799999999999999999999999999999995246667778888888887776655
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
.+.... ...++.|+|.|...|...+.+.+..++++ +++..+++.+...++|.
T Consensus 284 --------~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~ 335 (355)
T TIGR00896 284 --------PMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-------------------QAAALSAMAQSIGYLLA 335 (355)
T ss_pred --------hhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-------------------HHHHHHHHHHHHHHHHH
Confidence 222222 23467799999988887777776555432 16888888888889999
Q ss_pred hHHhhhhhhhccccc
Q 042477 165 LLGITLMSYIQDTFG 179 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g 179 (478)
.++|.+.|++.++.|
T Consensus 336 ~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 336 ALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-08 Score=98.68 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=105.7
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhH-HHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWN-GLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
..+.|+.+++|+++.+.+++..... ....++.+++|++.||+ |||+.+..+..+..+..+.+...+..+ +
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------~ 301 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------K 301 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------C
Confidence 4455677789999999999887655 45788899999999996 999998877777666544432211100 2
Q ss_pred chHHHHHHH----HHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 94 CSSFLFLPL----SLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 94 ~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
+.+.+++.. +..+++.+...+....++.+.+|.++ + +.+....++|..+++.
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~----~~~~~~~~l~~~~~~~ 357 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ--------------------Y----ALLSALASVGRVYVGP 357 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH--------------------H----HHHHHHHHHHHHHHHH
Confidence 334444443 34456666666666777776666433 3 4444445677776777
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
++|++.+.+||+..|.+.+++.+++..+.+...
T Consensus 358 ~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 358 TSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998887777665554433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=114.22 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=123.5
Q ss_pred hhhhhHHHHHHhhhhcCCChh-hHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 9 FKGVASNLVTYLTDVMKMSNS-SAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~-~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
.+.+...++.|+++.+|.+.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+++.+++...
T Consensus 248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~------- 319 (1146)
T PRK08633 248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPTA------- 319 (1146)
T ss_pred HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHHh-------
Confidence 344566788999999999999 999999999999999999999999996 99999999888888887777766
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
.+.+.++++.++.|++.+...+...+++.+..|++. |++++++.++..++|.+++
T Consensus 320 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------------------rg~~~~~~~~~~~lg~~~~ 374 (1146)
T PRK08633 320 -----PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE--------------------LGKVLAANNFLQNVGMLLF 374 (1146)
T ss_pred -----hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc--------------------hhhhhHHHHHHHHHHHHHH
Confidence 566777788888999999988999999999999887 9999999999999999888
Q ss_pred hhhhhhhcc-ccchhHHHHHHHHH
Q 042477 168 ITLMSYIQD-TFGWVIGFAIPTIA 190 (478)
Q Consensus 168 ~~~~~~i~~-~~g~~~~f~~~~~~ 190 (478)
+.+++.+.. .+++...|.+.+.+
T Consensus 375 ~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 375 LALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHH
Confidence 877776543 23555556554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=101.86 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=113.3
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
..+++......+.|+++.+|.++...++......+...++.++.++++||+ |+|+++.++.++..++.+++.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~~~~~~~~~--- 316 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGYLLFFWVSV--- 316 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc---
Confidence 344455555567778878887766655555444566778899999999996 9999999999998888877765421
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+.+.+++..++.++|.+...+...++.+|..|.++- +| .++.++..++.+.+...+|..
T Consensus 317 -------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~------------~~-g~r~~G~~~~~~~~~~klg~a 376 (448)
T PRK09848 317 -------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY------------LT-GVRIEGLTYSLFSFTRKCGQA 376 (448)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH------------hh-CccchhHHHHHHHHHHHHHHH
Confidence 3456677778889999999999999999998876541 01 111268889999999999999
Q ss_pred HHhhhhhhhccccch
Q 042477 166 LGITLMSYIQDTFGW 180 (478)
Q Consensus 166 ig~~~~~~i~~~~g~ 180 (478)
+|+.+.+.+.+..||
T Consensus 377 ig~~i~g~~l~~~G~ 391 (448)
T PRK09848 377 IGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999988876544444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=92.52 Aligned_cols=132 Identities=10% Similarity=0.046 Sum_probs=98.0
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
....|.++.+| +...+.|...+|.+......+.+-|+.||+ |-|.+.+++..+..+|..+=.++..+. .++.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~p~------v~~~ 137 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSLPF------VPPL 137 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccCcc------cccc
Confidence 45677878888 777788999999999999999999999996 999999999999999999998885531 1133
Q ss_pred hH--HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 95 SS--FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 95 ~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
+. ..+.+-.+.+...-.+...-..+.+-+|++++ |..+...-.++.-+|.++|.++.+
T Consensus 138 f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q--------------------ra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 138 FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ--------------------RAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch--------------------hhhhhhHHHhcchHHHHHHhhccc
Confidence 34 55566666666655554444566677999887 778777765555566665555544
Q ss_pred hh
Q 042477 173 YI 174 (478)
Q Consensus 173 ~i 174 (478)
.+
T Consensus 198 il 199 (480)
T KOG2563|consen 198 IL 199 (480)
T ss_pred ee
Confidence 44
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=96.83 Aligned_cols=157 Identities=11% Similarity=-0.053 Sum_probs=117.0
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
......++.|+++.+|.++.+.|.+.....++..+++++.+++.||+ ++++++..+.. ..+...++...
T Consensus 222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~--------- 290 (393)
T PRK11195 222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ--------- 290 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH---------
Confidence 34445567788889999999999999999999999999999999996 99998887753 33333333333
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
++.+...+..++.|++.+...+...+.+.+..|++. . +++.++..+...++|..++..
T Consensus 291 ---~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~------------------~g~~~a~~~~~~~~~~~~~~~ 348 (393)
T PRK11195 291 ---HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G------------------AGHSIAVQNFNENLAMLLMLG 348 (393)
T ss_pred ---hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c------------------chhHHHHHhHHHHHHHHHHHH
Confidence 445666677778899999888888888877644321 1 689999999999999999998
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+.+.+ ...|-+..+.+.....+++..+.+.
T Consensus 349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 349 LYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 88866 4567666666655555555444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-08 Score=96.36 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=129.1
Q ss_pred hhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCC
Q 042477 12 VASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANT 91 (478)
Q Consensus 12 ~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~ 91 (478)
+...-..|-..++|++..+...+....++...++++++|+|.||+ |-|+++.++++++.+..+.....
T Consensus 271 il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~~~~~~~~----------- 338 (438)
T COG2270 271 ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIAALYLIFL----------- 338 (438)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHHHHHHHHc-----------
Confidence 334566777789999999999999999999999999999999996 99999999999998887777666
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 92 TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 92 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
....-+.+.-.+.|...|+.++.+-++.++.+|+++ -+++|+.|......++.+||.+.
T Consensus 339 -~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k--------------------~~~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 339 -EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK--------------------EGRFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred -cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc--------------------ccceeehhhhhhhHHHHHHHHHH
Confidence 334445555567899999999999999999999988 68999999999999999999999
Q ss_pred hhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 042477 172 SYIQDTF-GWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 172 ~~i~~~~-g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
+.+.+.. .-|..+..-.++.+++.+++..
T Consensus 398 ~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 398 AVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred HHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 9887654 3667766666666666555444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=9e-08 Score=99.23 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=124.4
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..+++.......+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |||+++..+.++.+++.++..+...
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHHHHh
Confidence 3455666666667788888778877 5567777788899999999999999996 9999999999999999999888832
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+.+.+++..++.|+|.+...+...++++|..+.++- +|++ +..+..++.+.+...+
T Consensus 313 ----------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~------------~tg~-r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 313 ----------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEW------------KTGR-RREGMYFSVNSFFIKI 369 (428)
T ss_pred ----------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHH------------hcCC-CchHHHHHhhhhhhHH
Confidence 4788888999999999999999999999999986541 1111 2278999999999999
Q ss_pred hhhHHhhhhhhhccccchh
Q 042477 163 GSLLGITLMSYIQDTFGWV 181 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~ 181 (478)
|..+++.+.+.+.+..|+.
T Consensus 370 ~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 370 GQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999888775444443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=110.60 Aligned_cols=166 Identities=11% Similarity=-0.047 Sum_probs=124.3
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc---
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF--- 82 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~--- 82 (478)
.+.++++..++|.|+++.+|.++.+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..++.+.+.+...
T Consensus 238 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (1140)
T PRK06814 238 WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFASSSVP 316 (1140)
T ss_pred HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhcccccc
Confidence 345566777899999999999999999999999999999999999999986 7777666666655555544433200
Q ss_pred -ccc-cCC---CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH
Q 042477 83 -AWA-ESP---ANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY 157 (478)
Q Consensus 83 -~~~-~~~---~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 157 (478)
++. ..- -....+.+.++++.++.|++.+...+...+++.+.+|++. |+++++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------------------~G~v~g~~~ 376 (1140)
T PRK06814 317 AEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH--------------------RARVIAANN 376 (1140)
T ss_pred cccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc--------------------ceeeeHHHH
Confidence 000 000 0000345667788888999999999999999999999888 999999999
Q ss_pred HHHhhhhhHHhhhhhhhcc-ccchhHHHHHHHHHHH
Q 042477 158 FGVCSGSLLGITLMSYIQD-TFGWVIGFAIPTIAML 192 (478)
Q Consensus 158 ~~~~~G~~ig~~~~~~i~~-~~g~~~~f~~~~~~~~ 192 (478)
...++|..+|+.+++.+.+ ..++...|.+.+++.+
T Consensus 377 ~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 412 (1140)
T PRK06814 377 VLNAAFMVAGTIILALLQALGFSIPWIILFIALANL 412 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999988863 4566666665554433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.8e-08 Score=95.89 Aligned_cols=132 Identities=24% Similarity=0.349 Sum_probs=113.6
Q ss_pred hhhhhhhHHHHHHhhhhcCCC-hhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMS-NSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~-~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
+.++....+++.|+.+.+|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+.+........++.+.+......
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 296 (352)
T PF07690_consen 220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALGLLLLPFS-- 296 (352)
T ss_dssp HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCSHHH--
T ss_pred HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 466677888999989999999 79999999999999999999999999996 99888888888777777776665321
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+....++..++.|++.+...+...+++.|.+|+++ |++.++..+...++|..
T Consensus 297 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~g~~~~~~~~~~~ 349 (352)
T PF07690_consen 297 -------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY--------------------RGTAFGLFNSIGSLGGI 349 (352)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH--------------------HHHHHHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHHHHHH
Confidence 345666778888999999999999999999999877 99999999999999999
Q ss_pred HHh
Q 042477 166 LGI 168 (478)
Q Consensus 166 ig~ 168 (478)
+||
T Consensus 350 igP 352 (352)
T PF07690_consen 350 IGP 352 (352)
T ss_dssp HHH
T ss_pred HCC
Confidence 987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=99.88 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=141.8
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccc--hhHHHHHHHHHHHHhhHHhhhcc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWD--RHSTILAFSFIYVLGLMALTSTA 81 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--r~~~i~~~~~~~~ig~~l~~~~~ 81 (478)
+..++|+.-..+++.|.. .++++..+++.++++..+...++.++.|+++|+. . ++.+..+++++..++.+.++.+
T Consensus 309 ~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~~p~~- 385 (509)
T KOG2504|consen 309 FAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLFLPFA- 385 (509)
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHHHHHh-
Confidence 445677777778888887 8999999999999999999999999999999996 6 3445556666666666666666
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
.+++.++..-++.|+..|.+....+..+.|..+.++ ...++++......
T Consensus 386 -----------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~--------------------l~~a~Gl~l~~~g 434 (509)
T KOG2504|consen 386 -----------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK--------------------LSNAYGLLLLFQG 434 (509)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh--------------------cchHHHHHHHHhH
Confidence 778888888999999999998888889999999887 8999999999999
Q ss_pred hhhhHHhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhhc
Q 042477 162 SGSLLGITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
++.++||.++|++.+..+ |...|+.+.+..+++.++++...
T Consensus 435 i~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 435 IGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999988777 99999999999888887766654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-07 Score=94.45 Aligned_cols=184 Identities=8% Similarity=-0.073 Sum_probs=117.1
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
+|.+....+|.|+++.++ ............+...+..+++|+++||+ |++|++.++.+...++...........
T Consensus 267 ~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~~~~~l~lp~~--- 340 (462)
T PRK15034 267 SFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFSALLFLTLPGT--- 340 (462)
T ss_pred HHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 344555688899887653 33333333345677889999999999996 999999998887777664433331100
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCccccccc--cccc-ccccccchhhhhhHHHHHhhhh
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTL--DNQN-KKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
+ ..+...+.+..+.+.++.|.-+.+...++.+.+|+++.+. .+.+- +.|. .+.+++-+...++......+|+
T Consensus 341 --~-~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Gg 415 (462)
T PRK15034 341 --G-SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYR--VKMKGGSDEQAQREAVTETAAALGFISAIGAVGG 415 (462)
T ss_pred --c-ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhc--ccccccchhHHhhHHHHHHHHHHHHHHHHHHccc
Confidence 0 0345556665555667777777778888888887421110 00000 0011 1112237788888888899988
Q ss_pred hHHhhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 165 LLGITLMSYIQDT-FGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 165 ~ig~~~~~~i~~~-~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
++-|.+.+...+. -++...|+...+..++|.++.++..
T Consensus 416 f~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 416 FFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred chhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888777766544 4588888888888888877766553
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=94.65 Aligned_cols=135 Identities=13% Similarity=-0.015 Sum_probs=104.0
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhH-HHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWN-GLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
+..++++++...++.|+++ +|+++.+.+.+..... +...++.+++|+++||+ |||+.+..+.++..++..+......
T Consensus 220 ~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~ 297 (356)
T TIGR00901 220 LYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALTNAGFVWLAS 297 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467778888899999986 9999999998887766 56778999999999996 9999999888888777665544311
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
.....+ ....+.+.+....++.+++.+...+...++..|.+|+++ |++.++.++...|
T Consensus 298 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 298 NGHHDG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF--------------------GATQMALLSSLSA 355 (356)
T ss_pred cCcccc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc--------------------cHHHHHHHHHHHh
Confidence 000000 000234566777788899999999999999999999988 9999999877655
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.6e-07 Score=90.92 Aligned_cols=156 Identities=15% Similarity=-0.005 Sum_probs=103.7
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchh---HHHH-HHHHHHHHhhHHhh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRH---STIL-AFSFIYVLGLMALT 78 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~---~~i~-~~~~~~~ig~~l~~ 78 (478)
++....+|++..++|.|++ +.|++.. .+.......+...++ .++++||. .|| +... ...++.+++..++.
T Consensus 202 ~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 202 GFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999996 4677764 455544444444433 57788874 543 3323 23333344433333
Q ss_pred hcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 79 STAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
.. .+....++...+.+++.....+...++.+|.+|++. |+++.++.+.
T Consensus 276 ~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--------------------rgt~~G~~~~ 323 (368)
T TIGR00903 276 FE------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL--------------------HGKAAGAIGF 323 (368)
T ss_pred Hc------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh--------------------cCcccchhhH
Confidence 33 223333444555666677777778899999999988 9999999999
Q ss_pred HHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042477 159 GVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFF 198 (478)
Q Consensus 159 ~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~ 198 (478)
..++|+..+|.+.+.+.. +.+..|.+.++..+++.+..
T Consensus 324 ~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 324 TSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 999999999998886663 66666766666555555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=98.30 Aligned_cols=131 Identities=13% Similarity=-0.005 Sum_probs=98.2
Q ss_pred hhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccch
Q 042477 37 SWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSL 116 (478)
Q Consensus 37 ~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 116 (478)
...+....+.+++++++||+ |||+.+.++.++..++.+++..... .......+..++.+++.+...+..
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 431 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------DLYFLRTALAVLGKFGITSAFQMV 431 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667888899999996 9999999999988888777766521 222344444555666777777888
Q ss_pred hhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 042477 117 QAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~ 196 (478)
..+.+|.+|++. |++++++.+....+|++++|.+.+ +. ..++..+|.+.+.+.+++.+
T Consensus 432 ~~~~~e~~p~~~--------------------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 432 YLYTAELYPTVV--------------------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHhcccccHHH--------------------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence 899999999887 999999999999999999999988 43 35666777776666555555
Q ss_pred HHHh
Q 042477 197 FFSF 200 (478)
Q Consensus 197 ~~~~ 200 (478)
+.++
T Consensus 490 ~~~~ 493 (505)
T TIGR00898 490 LTLF 493 (505)
T ss_pred HHHc
Confidence 4443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=89.90 Aligned_cols=147 Identities=10% Similarity=-0.014 Sum_probs=105.5
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
.++.....++.|++ ++|+++.+.++......+...++.++++++.||+ |+|+.+........++.+.+.......
T Consensus 218 ~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 292 (401)
T PRK11043 218 AFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS--- 292 (401)
T ss_pred HHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 34555566777775 5899999999888777788888999999999996 999987666665555544333221100
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHH
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLG 167 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig 167 (478)
..+....+++..+.+++.+...|...+...|..| ++ ++++.++++.....++..+
T Consensus 293 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------~g~~~g~~~~~~~~~~~~~ 347 (401)
T PRK11043 293 ----HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA--------------------TGKAAALQNTLQLGLCFLA 347 (401)
T ss_pred ----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc--------------------ChHHHHHHHHHHHHHHHHH
Confidence 0334455566677888889888888888777765 34 8999999988888888888
Q ss_pred hhhhhhhccccchhHHH
Q 042477 168 ITLMSYIQDTFGWVIGF 184 (478)
Q Consensus 168 ~~~~~~i~~~~g~~~~f 184 (478)
+.+.+.+.+.......+
T Consensus 348 ~~~~g~l~~~~~~~~~~ 364 (401)
T PRK11043 348 SLLVSALISTPLLTTGS 364 (401)
T ss_pred HHHHHHccCCChhHHHH
Confidence 88888776654444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.1e-07 Score=94.82 Aligned_cols=178 Identities=19% Similarity=0.194 Sum_probs=138.0
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcc--ccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTA--FAW 84 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~--~~~ 84 (478)
-.+.+......+-+.+.++++.++.|++.+.+-++..+...+..|.+-|. -|-|.+-+|.++.++|.++.++-- ..+
T Consensus 110 ~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~ 188 (735)
T KOG3626|consen 110 GLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGP 188 (735)
T ss_pred HhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCc
Confidence 33446667777888888999999999999999999999999999999996 899999999999999999877541 001
Q ss_pred cc----------------------------CCC---------CCcc-chHHHHHHHHHHHHhccccccchhhhhhccCCC
Q 042477 85 AE----------------------------SPA---------NTTS-CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDN 126 (478)
Q Consensus 85 ~~----------------------------~~~---------~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 126 (478)
+. +.+ ..+. -+.+++++.++.|+|....+|.-.+|+=|-..+
T Consensus 189 y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~ 268 (735)
T KOG3626|consen 189 YEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK 268 (735)
T ss_pred chhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc
Confidence 10 000 0011 233778899999999999999888888887776
Q ss_pred CCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc------------------cc-chhHHHHHH
Q 042477 127 NNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD------------------TF-GWVIGFAIP 187 (478)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~------------------~~-g~~~~f~~~ 187 (478)
++ -...+++.+....+|.++|.+++++... .. .||..|+++
T Consensus 269 ~~--------------------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 269 KN--------------------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred cC--------------------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 66 6789999999999999999888887521 12 499999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 042477 188 TIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~ 205 (478)
+.+.++..+.++++.+.+
T Consensus 329 g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHhCcccC
Confidence 998888877777765444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=89.27 Aligned_cols=137 Identities=10% Similarity=0.089 Sum_probs=89.7
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
...+.|+++++|+++.+.+.......+...++.++.|++.||+ |||+.+..+..+..++.+++... .
T Consensus 224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~------------~ 290 (392)
T PRK10473 224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS------------P 290 (392)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH------------H
Confidence 3446677788999999999999999999999999999999996 99999999999888888877766 2
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccc-hhhhhhHHHHHhhhhhHHhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNK-SLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
+....+....+.+.|.+...+.. ...+..|.++ | +.+.+. ..++..+|+.+++
T Consensus 291 ~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~--------------------~~g~~~~~----~~~~~~~g~~~~~ 344 (392)
T PRK10473 291 SHAVSLFGITLICAGFSVGFGVA--MSQALGPFSL--------------------RAGVASST----LGIAQVCGSSLWI 344 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcc--------------------cccHHHHH----HHHHHHHHHHHHH
Confidence 23333333344444443332222 2223333322 3 233333 4456666666767
Q ss_pred hhccccchhHHHHHHHH
Q 042477 173 YIQDTFGWVIGFAIPTI 189 (478)
Q Consensus 173 ~i~~~~g~~~~f~~~~~ 189 (478)
++.+..|+.....+.+.
T Consensus 345 ~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 345 WLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHhccchhHHHHHH
Confidence 77766776654444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.4e-07 Score=92.43 Aligned_cols=128 Identities=15% Similarity=0.060 Sum_probs=95.0
Q ss_pred hhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHh
Q 042477 29 SSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLG 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 108 (478)
...+.+.....+...++.++.++++||+ |||+.+..+.++..++.+....... .+.+.+++..++.|+|
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~g~~ 332 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIPP----------SNVWLIFALNILFNFI 332 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhCc----------chHHHHHHHHHHHHHH
Confidence 3344455555577778888999999996 9999999888766654443333211 4566677788889999
Q ss_pred ccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccch
Q 042477 109 LAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFGW 180 (478)
Q Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g~ 180 (478)
.+...+...++++|..|.++. ++++ +..+..++.+.+..++|..+|+.++|++.+..||
T Consensus 333 ~~~~~~~~~am~ad~~d~~e~------------~~G~-r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 333 QNLTTPLQWSMFSDVVDYEEK------------RSGR-RLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHhhhhhhhh------------hcCc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999885441 1111 1267788999999999999999999988766666
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-06 Score=87.55 Aligned_cols=133 Identities=8% Similarity=-0.099 Sum_probs=90.0
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCC
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPA 89 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~ 89 (478)
+......+.|+.+.+|.++.+.+.+.....+...++.+++|++.||+ |||+.+..+..+..+..+.+......
T Consensus 211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~~------ 283 (377)
T PRK11102 211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVVSALL------ 283 (377)
T ss_pred HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33444556677788999999999999999999999999999999996 99999998887655533333222110
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHH-HhhhhhHHh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFG-VCSGSLLGI 168 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~ig~ 168 (478)
+.+.+...++..+.+.+.+...++....+.|..| ++ +++..+..... ..+|+.+++
T Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------~g~~~~~~~~~~~~~g~~~g~ 340 (377)
T PRK11102 284 --DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM--------------------AGTASSLAGTLRFGIGAIVGA 340 (377)
T ss_pred --hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc--------------------chHHHHHHHHHHHHHHHHHHH
Confidence 0234444455555555566666666666777665 34 77777775443 346676676
Q ss_pred hhhh
Q 042477 169 TLMS 172 (478)
Q Consensus 169 ~~~~ 172 (478)
.+++
T Consensus 341 ~~~~ 344 (377)
T PRK11102 341 LLSL 344 (377)
T ss_pred HHHh
Confidence 6544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0001 Score=76.00 Aligned_cols=333 Identities=13% Similarity=0.075 Sum_probs=180.8
Q ss_pred HHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhcccccc
Q 042477 35 VSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNP 114 (478)
Q Consensus 35 ~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 114 (478)
.++-+....+.+++++.+-|+. |.|+.+.++...+..-.+-... .|.+.++++-.+.|+|.+..+.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-------------~N~y~~yfssallG~Gaallw~ 121 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-------------PNSYYLYFSSALLGFGAALLWT 121 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-------------cchHHHHHHHHHhhhhHHheec
Confidence 5666677788899999999995 9999999999888775554443 3578899999999999999999
Q ss_pred chhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc---c-----ccchh-----
Q 042477 115 SLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ---D-----TFGWV----- 181 (478)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~---~-----~~g~~----- 181 (478)
....+.++..+++. +++..++.+...+.+.++|..+...+. + ..+.+
T Consensus 122 GqG~ylt~~st~~t--------------------ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (461)
T KOG3098|consen 122 GQGGYLTSNSTRET--------------------IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFE 181 (461)
T ss_pred ccceehhhcCChhh--------------------HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcc
Confidence 99999999888766 778888877788888887755443221 1 01221
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccc
Q 042477 182 ---IGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAMELELQEKPLC 258 (478)
Q Consensus 182 ---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
..|.+-.+..+++.....-.... ...|.+.....+ +. .+..+.+..
T Consensus 182 ~~~~~~~i~~~~~v~~~~~~l~~i~~--~~~p~~~~~~~~-------------------------~~--~~~~~~~~l-- 230 (461)
T KOG3098|consen 182 VLFIDFEIKVLFGVLLAISVLSIINF--DFLPSKDVVNCK-------------------------SS--SETSFSELL-- 230 (461)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhe--eecCccchhhhh-------------------------hh--ccccHHHHH--
Confidence 11111111111111100000000 001111000000 00 000000000
Q ss_pred cCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHH
Q 042477 259 CNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITV 338 (478)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 338 (478)
+ ..-+ ....++.+...+++...-.....+.....+-. ...+. .....-.+..++.+
T Consensus 231 ------------~---~~~~-l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i----~ft~~----~~~n~~~~~ai~~~ 286 (461)
T KOG3098|consen 231 ------------K---LTFK-LLKTPKMLLLFPFFFYTGLETSFWISIYPTCI----SFTRK----LGSNTTYLIAIYSI 286 (461)
T ss_pred ------------H---HHHH-HhcCHhHHHHHHHHHHHHHHHHHHHhccchhh----hhhhh----ccCcchhHHHHHHH
Confidence 0 0000 11112233333333322211111111111111 11111 12234445666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh--hhhccCC-CccchHHHHHHHH
Q 042477 339 SIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRL--QRSKQAE-AKPITIFWLLPEY 415 (478)
Q Consensus 339 ~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~li~~~ 415 (478)
..-++....+.....+.||.. +.+....+.+|.++..++.++.......-. ...++.+ ....+.....+..
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir------~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIR------GFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhh------hcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 666666666666666666553 466666777777777777666543211000 0001111 1122344566678
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHH
Q 042477 416 VLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALL 463 (478)
Q Consensus 416 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i 463 (478)
+++|+++.......+.++....|++ |..+.+++-+-.++++.++...
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~~~~-~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLYPDD-RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999554 8888888877777777654433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-07 Score=95.21 Aligned_cols=150 Identities=16% Similarity=0.107 Sum_probs=105.4
Q ss_pred hhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCC
Q 042477 9 FKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESP 88 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~ 88 (478)
++......+.|++..++ ++...+.+.....+...++.++.++++||+ |||+++.++..+.+++.+........+
T Consensus 247 ~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~~~---- 320 (473)
T PRK10429 247 SNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVLSCGVLLLMGLAA---- 320 (473)
T ss_pred HHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhccC----
Confidence 33333334434433333 455566666666688888899999999996 999999988887777666554321100
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh
Q 042477 89 ANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 168 (478)
+.+.+.+++.-++.+++.+...+...++++|..|.++-+ + .++..+..++.+.+...+|..+|+
T Consensus 321 ---~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~------------t-G~R~~G~~~s~~~~~~K~~~al~~ 384 (473)
T PRK10429 321 ---PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYK------------L-GIRCESIAYSVQTMVVKGGSAFAA 384 (473)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh------------c-CccchhHHHHHHHHHHHHHHHHHH
Confidence 044566667777889999999999999999998854311 1 112267789999999999999999
Q ss_pred hhhhhhccccch
Q 042477 169 TLMSYIQDTFGW 180 (478)
Q Consensus 169 ~~~~~i~~~~g~ 180 (478)
.+.|++.+..||
T Consensus 385 ~i~g~~l~~~Gy 396 (473)
T PRK10429 385 FFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHcCC
Confidence 999887665555
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=89.21 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=109.4
Q ss_pred hhhhHHHHHHhhhh-cCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCC
Q 042477 10 KGVASNLVTYLTDV-MKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESP 88 (478)
Q Consensus 10 ~~~~~~l~~yl~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~ 88 (478)
.++.++++.|+++. .+.+....+...+.+.....++.+++|+++||+ ++|+++.+...+.++..++....
T Consensus 249 ~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~~-------- 319 (410)
T TIGR00885 249 IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIFA-------- 319 (410)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 34556778888642 244445555566666678889999999999996 99999988888888887777765
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHh
Q 042477 89 ANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGI 168 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~ 168 (478)
.+.. .....++.|+..+.+.|.+.++..+..+++. +.....+. .. -+|+.+.|
T Consensus 320 ----~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~--------------------~~~s~~l~-~~-~~Gga~~p 372 (410)
T TIGR00885 320 ----GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT--------------------KYGAAGLV-MA-IIGGGIVP 372 (410)
T ss_pred ----CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------------------hhhHHHHH-HH-HhccchHH
Confidence 2222 3566677888888889999999999988654 22222222 22 39999999
Q ss_pred hhhhhhcccc------chhHHHHHHHHHHHHHH
Q 042477 169 TLMSYIQDTF------GWVIGFAIPTIAMLTST 195 (478)
Q Consensus 169 ~~~~~i~~~~------g~~~~f~~~~~~~~~~~ 195 (478)
.+.|++.|.. +.+..|+++.++.+...
T Consensus 373 ~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (410)
T TIGR00885 373 PLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIF 405 (410)
T ss_pred HHHHHHHHHhcccccCccchHHHHHHHHHHHHH
Confidence 9999999854 58889998887655543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-06 Score=83.42 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=121.2
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+..+.||.+..++|.++. +.|+|..++|++++...+.+...++.+-.+++|.-.+|+........+.+|.+-+.+...
T Consensus 219 lqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~- 296 (395)
T COG2807 219 LQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG- 296 (395)
T ss_pred hhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-
Confidence 346789999999999996 789999999999999999999999999999998778889999999999999888877621
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhh
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSG 163 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 163 (478)
++.... .+++|+|.|+..|....++.+..++.+ +-++..++-+-...+=
T Consensus 297 ---------~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~-------------------~Aa~LSgmaQg~GYll 345 (395)
T COG2807 297 ---------QLPILW---ALLLGLGQGGAFPLALTLILLRSSDAA-------------------IAAALSGMAQGVGYLL 345 (395)
T ss_pred ---------hHHHHH---HHHHhCccchHHHHHHHHHHhhcCChH-------------------HHHHHHHHhhhhhHHH
Confidence 222222 478999999999999999999876544 1445555544455555
Q ss_pred hhHHhhhhhhhcccc-chhHHHHHHHHHH
Q 042477 164 SLLGITLMSYIQDTF-GWVIGFAIPTIAM 191 (478)
Q Consensus 164 ~~ig~~~~~~i~~~~-g~~~~f~~~~~~~ 191 (478)
...||.+.|++.|.. +|+..+..-+...
T Consensus 346 Aa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 346 AAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 667888999998865 5877765544433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-06 Score=87.57 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=119.5
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
-.+.+-++-|++..++.+..........+.++++.++.||+ |||+.++.+..+..+..+++.+........+ + .-.
T Consensus 292 Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-~--~~~ 367 (485)
T KOG0569|consen 292 YSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVALLLMSIALFLSNSFG-S--WLS 367 (485)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--HHH
Confidence 34455567899999999999999999999999999999996 9999999999998888888776643211000 0 000
Q ss_pred HHHHHHHHHHHHhcc-ccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 96 SFLFLPLSLISLGLA-GYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
...+++.++..++.+ +..|...-+.+|++|++. |..++++-.....+..++-...-..+
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~--------------------R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA--------------------RSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc--------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344444444333 235788889999999887 99999998888888888877777778
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 042477 175 QDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKK 208 (478)
Q Consensus 175 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 208 (478)
.+.+|- +.|++..+...++.+..+...|+.+.+
T Consensus 428 ~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 428 QNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 777775 555555555555555555555544433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.3e-05 Score=75.41 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=112.3
Q ss_pred HHHHHHhhhh-cCCChhhHh-hHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCC
Q 042477 14 SNLVTYLTDV-MKMSNSSAA-KTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANT 91 (478)
Q Consensus 14 ~~l~~yl~~~-l~~~~~~~~-~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~ 91 (478)
+++..|+++. .|+++.|.. -+.-.+.-.....-++...++|.. |.|.+++++.+...+...++.+.
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~----------- 91 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG----------- 91 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4688999987 999999875 444445555666777889999985 99999999999989888888888
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 92 TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 92 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
.+...+-+.-+..|++.+. ..+..+++=...|+++ -.++.++...+.-+|..++..++
T Consensus 92 -~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~--------------------yq~vts~~raa~l~g~~~s~~lg 149 (412)
T PF01770_consen 92 -TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH--------------------YQKVTSYTRAATLVGRFISSLLG 149 (412)
T ss_pred -CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888877 4666777777777665 44566665555556666555554
Q ss_pred hhhc--cccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 172 SYIQ--DTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 172 ~~i~--~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
=.+. +..++...+.++.....++.++.++.
T Consensus 150 Qllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 150 QLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333 34567777777777777766665554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-06 Score=88.77 Aligned_cols=168 Identities=14% Similarity=0.059 Sum_probs=114.3
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccch-------hHHHH--HHHHHHHH
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDR-------HSTIL--AFSFIYVL 72 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-------~~~i~--~~~~~~~i 72 (478)
.+++..+++-+..++|+|+.+.||++..+.|+..+...+...+..+++|+++||. -+ ++-+. ++....++
T Consensus 267 ~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn~i~~~~~ai 345 (466)
T KOG2532|consen 267 AFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFNTIAFGGPAV 345 (466)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHHhHHHHHHHH
Confidence 3678889999999999999999999999999999999999999999999999996 33 22222 33333344
Q ss_pred hhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhh
Q 042477 73 GLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLF 152 (478)
Q Consensus 73 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 152 (478)
.++.++.... .+....++...+.-...|...+....-..|..|+ . -+.+
T Consensus 346 ~l~~l~~~~~----------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq-~--------------------a~~l 394 (466)
T KOG2532|consen 346 FLLVLAFTSD----------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQ-H--------------------AGFV 394 (466)
T ss_pred HHHeeeecCC----------CcchHHHHHHHHHHHHcccchhhhHhhhhhccch-H--------------------HHHH
Confidence 4444444321 1121122211111111222223333333333332 2 6899
Q ss_pred hhhHHHHHhhhhhHHhhhhhhhccc---cchhHHHHHHHHHHHHHHHHHHhh
Q 042477 153 FKWWYFGVCSGSLLGITLMSYIQDT---FGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 153 ~~~~~~~~~~G~~ig~~~~~~i~~~---~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
+++.+...++.++++|.+.+.+..+ ..|+..|++.+++..++.+++.+.
T Consensus 395 ~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 9999999999999999999988732 479999999998888876554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=87.48 Aligned_cols=127 Identities=14% Similarity=0.046 Sum_probs=97.4
Q ss_pred hhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC
Q 042477 8 AFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES 87 (478)
Q Consensus 8 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~ 87 (478)
.++++..+++.|+++.+|.++.+++.......+...++.+++|+++||+ |||+.+..+......+..++.+....
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~~---- 314 (366)
T TIGR00886 240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAFLVVLGLVS---- 314 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHHHHHhcCCC----
Confidence 4566778899999999999999999999999999999999999999996 99998888877777766666554210
Q ss_pred CCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 88 PANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
+.+...+.+...+.+++.|...+...++.++..|+ + +++.++..+...++|+
T Consensus 315 ----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~--------------------~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 315 ----PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A--------------------TGAVSGLVGAIGNLGG 366 (366)
T ss_pred ----cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h--------------------cccHHHHHHHhccCCC
Confidence 01455555555666666676667777888888763 4 8899999887777763
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0004 Score=70.42 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 406 ITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 406 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
.++|.+.+..+..|+-.+..++..+..+.++.|++.|..++|......++|-.++..+.-.++.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3677777788888999999999999999999999999999999999999999999888776654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-06 Score=87.91 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=123.4
Q ss_pred hhhHHHHHHhhhhcCCChhh----HhhHHHhhHHHHhhhhhhhhH----HhhhccchhHH--HHHHHHHHHHhhHHhhhc
Q 042477 11 GVASNLVTYLTDVMKMSNSS----AAKTVSSWNGLTSMLPLLLAP----LADSYWDRHST--ILAFSFIYVLGLMALTST 80 (478)
Q Consensus 11 ~~~~~l~~yl~~~l~~~~~~----~~~~~~~~~~~~~i~~~~~G~----laD~~~Gr~~~--i~~~~~~~~ig~~l~~~~ 80 (478)
-..+.++.|.++..+.+... .+++.+...+...+..++..+ +.||..+.+.. +.+|+++..++.+.+.+.
T Consensus 290 Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~ 369 (475)
T TIGR00924 290 QMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAAS 369 (475)
T ss_pred HhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667776655543222 667888888888877776554 45542133333 378888888888777653
Q ss_pred ccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHH
Q 042477 81 AFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGV 160 (478)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (478)
.. ..+.+...+.+++++..++.++|.....|...+++.+..|++. |++.++.++...
T Consensus 370 ~~---~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~--------------------~g~~~g~~~l~~ 426 (475)
T TIGR00924 370 IW---FADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL--------------------MGQMLGMWFLAQ 426 (475)
T ss_pred Hh---hcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH--------------------HHHHHHHHHHHH
Confidence 11 0111112678899999999999999999999999999999888 999999999999
Q ss_pred hhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 042477 161 CSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRF 204 (478)
Q Consensus 161 ~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 204 (478)
.+|..+++.+.....+..+|...|...++..++..++.++..|+
T Consensus 427 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 427 AMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877666788888887777777666666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.4e-06 Score=78.54 Aligned_cols=145 Identities=20% Similarity=0.280 Sum_probs=111.6
Q ss_pred HHHHHhhhhcCCCh--hhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 15 NLVTYLTDVMKMSN--SSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 15 ~l~~yl~~~l~~~~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
.++.+. .+++.+. ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.++..+...
T Consensus 24 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------- 91 (338)
T COG0477 24 ALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------- 91 (338)
T ss_pred HHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc----------
Confidence 444444 3455454 5789999999999999999999999997 9999988888776666566655521
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCC-CCCCCcccccccccccccccccchhhhhhHHH-HHhhhhhHHhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDN-NNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF-GVCSGSLLGITL 170 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~~ 170 (478)
.....+++.|+..|++.+...|...+++.|.+|+ ++ |+...+.... ...+|..+++.+
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE--------------------RGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2478899999999999999999999999999886 33 8888888777 578888888877
Q ss_pred hhhhccc--cchhHHHHHHHHHH
Q 042477 171 MSYIQDT--FGWVIGFAIPTIAM 191 (478)
Q Consensus 171 ~~~i~~~--~g~~~~f~~~~~~~ 191 (478)
++.+... .+|+..|.+.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 152 AGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 7666543 57888666555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=81.99 Aligned_cols=139 Identities=10% Similarity=-0.056 Sum_probs=98.0
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
..+.|+++.+|.++.+.++.......+..++.++.+++.||+ ||+... +.....++.+......... ..+
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~ 298 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG-------VMN 298 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc-------ccc
Confidence 455677777999999999988887788888888899999986 743333 2222222222221111000 034
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
.+.+.++.++.++|.+...|...++..|.+|+ + ++...+..+...++|..+++.+++++
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~--------------------~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 299 VWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L--------------------AGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c--------------------chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55667778889999999999999999888873 3 78888898888999999999999888
Q ss_pred ccccchhHHH
Q 042477 175 QDTFGWVIGF 184 (478)
Q Consensus 175 ~~~~g~~~~f 184 (478)
.....+....
T Consensus 358 ~~~~~~~~~~ 367 (394)
T PRK11652 358 PQTGQFSLGL 367 (394)
T ss_pred cCCchHHHHH
Confidence 7654444433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-05 Score=74.75 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred HhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHH
Q 042477 19 YLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFL 98 (478)
Q Consensus 19 yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (478)
|+.+.+|+...+.|.+...-.....++..+.|-++||. ||||.-. .+.+-.++.++.-.. +.+-++
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracv----tycitYiLsCiTKhS---------pqYkVL 127 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACV----TYCITYILSCITKHS---------PQYKVL 127 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-cccccee----eehHHHHHHHHhhcC---------CceEEE
Confidence 55567889999999888777778888999999999996 9999754 444455555555321 567789
Q ss_pred HHHHHHHHHhccccccchhhh-hhccC
Q 042477 99 FLPLSLISLGLAGYNPSLQAF-GADQM 124 (478)
Q Consensus 99 ~~~~~l~g~g~g~~~~~~~~~-~~~~~ 124 (478)
+++|++-|+.++....+..+. ++|.-
T Consensus 128 mVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 128 MVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred eehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999877766664 44444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.4e-05 Score=73.46 Aligned_cols=159 Identities=9% Similarity=-0.047 Sum_probs=109.0
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
-...+++.+|+|++|.+.+-..-.++..+ .++.|.+.|++ |.+.++.+|.+...+|...+..+-.... ...+.
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i-----~~~~~ 96 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI-----PSLPV 96 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc-----Cccch
Confidence 34667889999999999999999999886 58999999996 9999999999999999999887732110 01345
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc
Q 042477 96 SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ 175 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~ 175 (478)
+.+.+..++.+.|.+.+.........+.||+ + ||++.++.-....+++.+-..+...+.
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~--------------------RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S--------------------RGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c--------------------cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 6666666666676666656655556677884 4 899999876667777665544443333
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 176 DTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 176 ~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
+.-.-...++++.....++.+..++.+
T Consensus 156 ~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 156 GDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 322223334444444444544444444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=80.62 Aligned_cols=167 Identities=11% Similarity=0.079 Sum_probs=120.7
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
..+.-....+...|+++.-|.+....+...+...+.=...-.+.+++..|+ |-|+++.++.+.+++=..+.+....++.
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~~~~~~~ 298 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAYFSDPWP 298 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 334444566788898643337777777766666666667778899999996 9999999999999997777776622100
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHH-Hhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFG-VCSGS 164 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~ 164 (478)
.......++-.++|+..|....+...++.+..|++. |.++.+++... ..+|.
T Consensus 299 -------~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~--------------------~at~Q~l~~~~~~Glg~ 351 (400)
T PF03825_consen 299 -------FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL--------------------RATAQGLYSALSFGLGG 351 (400)
T ss_pred -------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc--------------------hHHHHHHHHHHHhhHHH
Confidence 111223334457999999999999999999999888 99999997764 57999
Q ss_pred hHHhhhhhhhccccchh------HHHHHHHHHHHHHHHHHHh
Q 042477 165 LLGITLMSYIQDTFGWV------IGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~------~~f~~~~~~~~~~~~~~~~ 200 (478)
.+|..++|++.+.+|-+ ..|.+++...++..+++.+
T Consensus 352 ~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 352 AIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998876644 4455555554444444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=77.55 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=81.0
Q ss_pred hHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchh
Q 042477 38 WNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQ 117 (478)
Q Consensus 38 ~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 117 (478)
.++.-+-+.++.+++.||+ |||+++....+++.+..+++..+-.. + ....+++.+|+++..+.+ +.+
T Consensus 390 tslaefPGlLIt~~iverl-GRKkTMal~l~~f~iflfll~~c~~r------n--~~tvllf~arafisg~fq----vaY 456 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERL-GRKKTMALSLILFGIFLFLLTTCKTR------N--AYTVLLFTARAFISGAFQ----VAY 456 (528)
T ss_pred HHHhhCCchhHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHhcCc------c--hhHHHHHHHHHHHhchhe----EEE
Confidence 3456667788999999995 99999999999999998888877331 1 234566788888765544 566
Q ss_pred hhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 118 AFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
.|.-|.+|... |+...+....+..+|+++.|.++.
T Consensus 457 vYtPEVyPTav--------------------RatgvGtcSsmaRIggI~~p~iA~ 491 (528)
T KOG0253|consen 457 VYTPEVYPTAV--------------------RATGVGTCSSMARIGGIFSPVIAM 491 (528)
T ss_pred EecCcccchhh--------------------hhcchhhhhhHHhhhhhhhhHHHH
Confidence 77888888776 999999999999999999999983
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.2e-05 Score=82.33 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=90.0
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
.....|.+..+|. +...+.+...+.+...++.+++++++||+ |||+++..+..+..+..++..+... .
T Consensus 249 ~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~----------~ 316 (460)
T PRK11462 249 GAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVPM----------Q 316 (460)
T ss_pred hHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhch----------h
Confidence 3344444444443 34455667777788889999999999996 9999877655544443333333211 2
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
+...+++..++.|++.+...+...++++|..+-++- +|+++ .-+..++.+.+...+|..+|+.++|+
T Consensus 317 ~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~------------~tG~r-~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 317 ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEW------------CNGKR-LTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH------------hcCCC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344555667888777777778899998774430 11121 13555677778899999999888887
Q ss_pred hccccch
Q 042477 174 IQDTFGW 180 (478)
Q Consensus 174 i~~~~g~ 180 (478)
+.+..||
T Consensus 384 iL~~~Gy 390 (460)
T PRK11462 384 MLAYGGY 390 (460)
T ss_pred HHHHcCC
Confidence 6544444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=80.17 Aligned_cols=141 Identities=17% Similarity=0.149 Sum_probs=112.5
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.+..|.+..+|.++...............++.++...+++|+ |||++...+.++.+++.+++.+... ++
T Consensus 258 ~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~~~~f~~~----------~~ 326 (467)
T COG2211 258 IMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYLLLYFTPA----------GS 326 (467)
T ss_pred hhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHHHHHhhcC----------cc
Confidence 345555666787777788888887788888899999999996 9999999999999999999998842 67
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
.++.++..++.++|.+...+...++++|..+-++ -+|.+| .-|..++.+.+..-+|.+++..+.|++
T Consensus 327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge------------~~TG~R-~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGE------------WKTGVR-REGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred hHHHHHHHHHHHHHhhccccccHHHhcchhhHHH------------HHhCCC-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999987544 122222 257778888888888888888777766
Q ss_pred ccccc
Q 042477 175 QDTFG 179 (478)
Q Consensus 175 ~~~~g 179 (478)
...+|
T Consensus 394 L~~~G 398 (467)
T COG2211 394 LGAIG 398 (467)
T ss_pred HHHcC
Confidence 44333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-05 Score=76.85 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=134.7
Q ss_pred hhhhhhhHHHHHHhh---------hhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHh
Q 042477 7 FAFKGVASNLVTYLT---------DVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMAL 77 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~---------~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~ 77 (478)
|..|-....+..++| +.+|++..+...+...+..+..++..+.|++..|..+++++...|+.+..++..++
T Consensus 213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 334444444555554 45999999999999999999999999999999866799999999999999999988
Q ss_pred hhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH
Q 042477 78 TSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY 157 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 157 (478)
..++.. .+.+.+..+.+++|+|.|.+.....+..-|..++++ .+.+++.+.
T Consensus 293 i~a~~~---------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~--------------------aG~~mG~WG 343 (403)
T PF03209_consen 293 ILAGPL---------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR--------------------AGLFMGAWG 343 (403)
T ss_pred HHHHhc---------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc--------------------hhHHHHHHH
Confidence 888652 568899999999999999999999999999988776 789999999
Q ss_pred HHHhhhhhHHhhhhhhhcc----------ccchhHHHHHHHHHHHHHHHHHH
Q 042477 158 FGVCSGSLLGITLMSYIQD----------TFGWVIGFAIPTIAMLTSTAFFS 199 (478)
Q Consensus 158 ~~~~~G~~ig~~~~~~i~~----------~~g~~~~f~~~~~~~~~~~~~~~ 199 (478)
..+.+...+|..++|.+.| ..+|-..|.+-++++++++.+..
T Consensus 344 aaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 344 AAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888876532 24677888888887777766544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.7e-05 Score=79.34 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=103.2
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
..+++....+|.|+++.+|.++.+.++.......+..++..+.+.+.++. ++++.+.....+..+|.+++.......
T Consensus 232 ~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~~l~~~~~~~~-- 308 (413)
T PRK15403 232 IPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGLALLIVGNLLW-- 308 (413)
T ss_pred HHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 44556666678999999999999999988777778888788887766554 454554444444455544443321000
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
+++....+++.++.++|.+...|+.....- .+.+. . ++++.+.+......+..+
T Consensus 309 -----~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~-~------------------~G~a~a~~~~~~~~~~~~ 362 (413)
T PRK15403 309 -----PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL-P------------------KGTVSASLNMVILMVMAV 362 (413)
T ss_pred -----cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC-C------------------CcHHHHHHHHHHHHHHHH
Confidence 033334567888889999988888875332 22222 1 678888888888888888
Q ss_pred HhhhhhhhccccchhHHHHHHHHHHHH
Q 042477 167 GITLMSYIQDTFGWVIGFAIPTIAMLT 193 (478)
Q Consensus 167 g~~~~~~i~~~~g~~~~f~~~~~~~~~ 193 (478)
++..++++.++ +-..+|.+..++..+
T Consensus 363 ~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 363 SVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 88888888664 556666555544333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=84.01 Aligned_cols=174 Identities=11% Similarity=0.120 Sum_probs=115.8
Q ss_pred hhhhhHHHHHHhhhhcCCChh----hHhhHHHhhHHHHhhhhhhhhHHhhhccchhH-------HHHHHHHHHHHhhHHh
Q 042477 9 FKGVASNLVTYLTDVMKMSNS----SAAKTVSSWNGLTSMLPLLLAPLADSYWDRHS-------TILAFSFIYVLGLMAL 77 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~----~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~-------~i~~~~~~~~ig~~l~ 77 (478)
|......++.|.++..+.+.. ...++.+...+...++.++.|++.||. |||+ -+.+|+++..++.+..
T Consensus 285 ~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~~~~~ 363 (489)
T PRK10207 285 YAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLGFLTA 363 (489)
T ss_pred HHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344445667777643332211 234455555567778888899999996 9997 3778888877776654
Q ss_pred hhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHH
Q 042477 78 TSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWY 157 (478)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 157 (478)
......-...+. ..+.+.+....+++|+|.+...|...+++.+..|++. ++.+++.++
T Consensus 364 ~~~~~~~~~~~~--~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~--------------------~g~~~g~~~ 421 (489)
T PRK10207 364 AAAGMWFADAQG--LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL--------------------MGFILGMWF 421 (489)
T ss_pred HHHHHhhcCCCC--ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH--------------------HHHHHHHHH
Confidence 321100000001 1456777788899999999999999999999999887 999999999
Q ss_pred HHHhhhhhHHhhhhhhhcc----------ccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 158 FGVCSGSLLGITLMSYIQD----------TFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 158 ~~~~~G~~ig~~~~~~i~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
...++|+.+|..++.+... .-.+...|...++..+++.++++...++.
T Consensus 422 l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~ 479 (489)
T PRK10207 422 LTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWL 479 (489)
T ss_pred HHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887754421 11245566666655555555555544444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=83.42 Aligned_cols=151 Identities=10% Similarity=0.003 Sum_probs=106.7
Q ss_pred HhhHHHhhHHHHhhhhhhh----hHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHH
Q 042477 31 AAKTVSSWNGLTSMLPLLL----APLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLIS 106 (478)
Q Consensus 31 ~~~~~~~~~~~~~i~~~~~----G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 106 (478)
.+++.+...+...++.++. +++.||+ +..+.+.+|.++.++|.+.+........ .+...+.+++++..++++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~l~f~~l~~~~~~~~---~~~~vs~~~~~~~~~l~~ 393 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCSGAFLVLPLGAKFAN---DAGIVSVNWLIASYGLQS 393 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCccCHHHHHHHHHHHH
Confidence 4566666666666776666 5666664 6778899999999999988776632111 111134568889999999
Q ss_pred HhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc----------c
Q 042477 107 LGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ----------D 176 (478)
Q Consensus 107 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~----------~ 176 (478)
+|.+...|...+++.+..|++. |++.++.+.....+|+.++..+..... .
T Consensus 394 ~ge~~~~p~g~s~~~~~aP~~~--------------------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~ 453 (500)
T PRK09584 394 IGELMISGLGLAMVAQLVPQRL--------------------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMS 453 (500)
T ss_pred HHHHHHhHHHHHHHHHhCcHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhh
Confidence 9999999999999999999888 999999998888888887766654321 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 177 TFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 177 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
..++...|...++..+++.++++...++.
T Consensus 454 ~~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 482 (500)
T PRK09584 454 LEVYGRVFLQIGIATAVIAVLMLLTAPKL 482 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12366777766665555544444444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.9e-05 Score=82.86 Aligned_cols=142 Identities=11% Similarity=-0.065 Sum_probs=111.9
Q ss_pred hhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccC-CCCCccchHHHH
Q 042477 21 TDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAES-PANTTSCSSFLF 99 (478)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~-~~~~~~~~~~~~ 99 (478)
++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+.......-+... .. .+...+.
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi---~~~~~~~ 355 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI---SDEVFVL 355 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccCC---CCeeeee
Confidence 356999999999999999999999999999999995 999999999999998876653221111100 00 1233455
Q ss_pred HHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccc
Q 042477 100 LPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFG 179 (478)
Q Consensus 100 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g 179 (478)
..-++.+++.+........++.+..|++. +++.++++....|+|..+++.+++++.+..|
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~~~--------------------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLCPSGC--------------------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhCCCCc--------------------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55677888888888888999999999887 8999999999999999999999999988777
Q ss_pred -----hhHHHHH
Q 042477 180 -----WVIGFAI 186 (478)
Q Consensus 180 -----~~~~f~~ 186 (478)
++..+.+
T Consensus 416 ~~~~~~~~~~~~ 427 (468)
T TIGR00788 416 ITCDNSNNLWLL 427 (468)
T ss_pred CCcccccchHHH
Confidence 5555443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-05 Score=79.13 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=126.4
Q ss_pred hhhhHHHHHHhhhhcC---CChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 10 KGVASNLVTYLTDVMK---MSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~---~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
+..-+-.+.|.+..++ .++...|.+.+.-.+.-.+...+..++.+|+ |.|+.++++..+.++=.+..+++
T Consensus 237 ~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~~iRi~~~~~~------ 309 (412)
T PF01306_consen 237 DVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIMAIRIIGSGFA------ 309 (412)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHHhhh------
Confidence 3333346777775443 2344567777777777888888999999995 99999999999999988888888
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh-HHHHHhhhhh
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW-WYFGVCSGSL 165 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~ 165 (478)
++.+.+.+...+.++-.+..-.+...++++.+|++- ..+.+.+ +.....+|..
T Consensus 310 ------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl--------------------sAt~y~v~~~~~~~~~~~ 363 (412)
T PF01306_consen 310 ------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL--------------------SATLYLVGFQFAKQIGII 363 (412)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG--------------------HHHHHHHHHTTTHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH--------------------HHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999765 5567766 4678889999
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
+.+.++|++.|++|++..|++.+..++...++..+..+
T Consensus 364 i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 364 ILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 99999999999999999998888777766666555543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00046 Score=71.27 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=83.6
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHH
Q 042477 330 ATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIF 409 (478)
Q Consensus 330 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (478)
+.....+...-+++-++.. |+.+ +++..+.+.+|+.+.++=++.....+ ++|
T Consensus 409 Gv~~a~~~~gEI~~~ffs~--------klI~-----kiGHv~v~~lgLa~~~~Rf~~~S~L~---------------n~W 460 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSF--------KLIE-----KIGHVNVMYLGLACNVGRFLYYSYLQ---------------NPW 460 (618)
T ss_pred eehhhhhccchHHHHHHHH--------HHHH-----HhcccceeeehhhHHHHHHHHHHHhc---------------Cch
Confidence 4444555555555544443 3333 46677778888888888777777653 778
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHH-HHhHHHHHHHHHHHHhhhc
Q 042477 410 WLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTS-VFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 410 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~~g~~lg~~i~~~~~~~ 470 (478)
.+++.=++.++-..++..+..+|+...+|+++|++++++... ...+|-.+|+.+.|.+.+-
T Consensus 461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 888888999999999999999999999999999999998654 4566777777777665443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=81.29 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=96.7
Q ss_pred chhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchH
Q 042477 329 PATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITI 408 (478)
Q Consensus 329 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (478)
.++++....+.-+++.|+.+.+ .+ +.++++.+.+|.++.+++.+..++.. ..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyL--------ad-----ryNR~~v~~vG~~iW~~Av~~~~fs~---------------~F 121 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYL--------AD-----RYNRKRVIAVGIFIWTLAVFASGFSN---------------HF 121 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHH--------Hh-----hcCcceEEeeHHHHHHHHHHHHHHHH---------------HH
Confidence 4556666666666777776654 22 56777889999999999999988762 57
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 042477 409 FWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 409 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
|.+++.-.+.|+||..+.|...+++.+.+|++.|++.++++++...+|+.+|-.....+.+.++
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 8888899999999999999999999999999999999999999999999999888777766554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00024 Score=60.15 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=70.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHH
Q 042477 367 ISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGF 446 (478)
Q Consensus 367 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 446 (478)
.++++.+..+..+..++.+..... .+.+......++.+++.....+....++.|..|++.|++++
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (141)
T TIGR00880 25 FGRKPVLLVGLFIFVLSTAMFALS---------------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVAL 89 (141)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHH
Confidence 344455666666666666554432 24566677788999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhc
Q 042477 447 ALYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 447 g~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
++.+....+|..+++.+.+.+.+.
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcc
Confidence 999999999999999999887644
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.6e-05 Score=76.54 Aligned_cols=156 Identities=14% Similarity=0.048 Sum_probs=118.0
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccc--hhHHHHHHHHHHHHhhHHhhhcccccccCCCC
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWD--RHSTILAFSFIYVLGLMALTSTAFAWAESPAN 90 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--r~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~ 90 (478)
-+.+++++.+.+..+.-+.|...--..+...+++.+.|.++||+ + |-..-..+++...+.+....++
T Consensus 290 ePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~---------- 358 (464)
T KOG3764|consen 290 EPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFA---------- 358 (464)
T ss_pred CcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhh----------
Confidence 34577888888874444778777777888999999999999997 9 5344445555555555555555
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhh
Q 042477 91 TTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITL 170 (478)
Q Consensus 91 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~ 170 (478)
+++..+++.++..+++.+..-....+....+.+..+.. +-+.-+..+++...+..+|.++||.+
T Consensus 359 --~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s--------------~~~vYGsVyaIad~a~sla~a~GP~~ 422 (464)
T KOG3764|consen 359 --TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVS--------------GFNVYGSVYAIADAAFSLAYAIGPTF 422 (464)
T ss_pred --hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcc--------------ccceeeeHHHHHHHHHHHhhhccccc
Confidence 77888999999999998888888888888887755411 00026788999999999999999999
Q ss_pred hhhhccccchhHHHHHHHHHHHHHH
Q 042477 171 MSYIQDTFGWVIGFAIPTIAMLTST 195 (478)
Q Consensus 171 ~~~i~~~~g~~~~f~~~~~~~~~~~ 195 (478)
+|.+.+.+|++|.-.+.++..++-.
T Consensus 423 gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 423 GGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred cchheeehhHHHHHHHHHHHHHHHH
Confidence 9999999999997766666555543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0019 Score=70.38 Aligned_cols=331 Identities=10% Similarity=-0.028 Sum_probs=220.4
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
+....++...-.+..........+++.....+..+.....+|-.-|+-..+..-+....++.+...+.+.... +..
T Consensus 4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~----~~~ 79 (654)
T TIGR00926 4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI----PSS 79 (654)
T ss_pred eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC----ccc
Confidence 3445555555555555667788889999999999999999999866666777777777778877777754211 101
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
.......++...+.++.++..++-+.+.+++.+..+ ..++.+..+++++..+.+.+ |.+++.
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~-----------------~~~~~~~~s~F~~fY~~iNi-GSlis~ 141 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE-----------------ERQLSLRSRFFSFFYFAINA-GSLIST 141 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC-----------------ccchhHHHHHHHHHHHHHHH-HHHHHH
Confidence 113445667777889999999999999999987543 34456799999999998886 567777
Q ss_pred hhccccc-hhH------HHH-HHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 173 YIQDTFG-WVI------GFA-IPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 173 ~i~~~~g-~~~------~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
.+..... +.. .|. ..++..++.++.+..+....+..++++ .+.....++.+......+.+ ..+
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~----p~gs~l~~v~~vi~~a~~~~-----~~~ 212 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKP----PKGNIVSKVIKCIVTALRKR-----FST 212 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCC----CCccHHHHHHHHHHHHHHHh-----hcc
Confidence 7765443 321 233 444444445555555555554444433 33333444544433322210 000
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCC
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKH-AVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGS 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 323 (478)
. ... ....|.++...+ ..++.+...+++.++...+.+++.+.++......+..++++..+.
T Consensus 213 --------------~--~~~--~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~ 274 (654)
T TIGR00926 213 --------------R--SEH--WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGD 274 (654)
T ss_pred --------------C--Ccc--cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCc
Confidence 0 000 001232221111 134567888999999999999999999888888888888876443
Q ss_pred ccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042477 324 RFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRS 398 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 398 (478)
+...+.....++.+..+...++...+..++.+++.+ +..+.+++.-+.+.+.++.+...+.+.......
T Consensus 275 -l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~-----~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 275 -VGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAK-----CGTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred -cCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHh-----cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445577888888888888888888889988755 556778899999999998888888887777764
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=70.27 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=111.2
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCc
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTT 92 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 92 (478)
.++++.|+.+..|.+..+++..++.+..+..++..++.++..|+ ...|.+.+..+...+-++...+.
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~------------ 322 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALI------------ 322 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 45789999888999999999999999999999999999999995 99999887776666655555555
Q ss_pred cchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 93 SCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 93 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
++ ..-+.+.++.|+-.+.+.|++.++..+..|++. ..-+..-...-+|+++-|.+.|
T Consensus 323 ~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t----------------------s~~s~~l~maivGGAiiP~l~G 379 (422)
T COG0738 323 GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT----------------------SVGSGLLVMAIVGGAIIPPLQG 379 (422)
T ss_pred cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc----------------------cccceeeeeheecchHHHHHHH
Confidence 33 444456677899999999999999999999544 2222223345689999999999
Q ss_pred hhccccchhHHHH-HHHHH
Q 042477 173 YIQDTFGWVIGFA-IPTIA 190 (478)
Q Consensus 173 ~i~~~~g~~~~f~-~~~~~ 190 (478)
++.|..|-...+. ++.++
T Consensus 380 ~i~d~~g~~~~~~~~pllc 398 (422)
T COG0738 380 VIADMFGIQLTFLIVPLLC 398 (422)
T ss_pred HHHHhhhhHHHHHHHHHHH
Confidence 9999999887766 44433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.75 E-value=9e-05 Score=57.14 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=51.1
Q ss_pred hhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHH
Q 042477 9 FKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIY 70 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~ 70 (478)
...+.++++.|++ +.|+|+.+.|.+.++..+...+++++.|+++||+ ||++.++....+.
T Consensus 16 ~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 3446667888886 5999999999999999999999999999999997 9988887766543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=77.27 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=104.1
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc---cchhHHHHHHHHHHHH-hhHHhh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY---WDRHSTILAFSFIYVL-GLMALT 78 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Gr~~~i~~~~~~~~i-g~~l~~ 78 (478)
+|....-|+...++|.|+++-.|++..+++.+...+.++..++.+++|+++||. ..+|......+.++.+ |.+.+.
T Consensus 283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~ 362 (495)
T KOG2533|consen 283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLL 362 (495)
T ss_pred HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788888999999986779999999999999999999999999999992 2677777766666555 445555
Q ss_pred hcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 79 STAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
.. ........+......+.+...++......+...++. +|-...+.+..
T Consensus 363 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-------------------k~~~~~~~~i~ 411 (495)
T KOG2533|consen 363 AA------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-------------------KALTTVSAIID 411 (495)
T ss_pred hh------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-------------------HhHHHHhhhhc
Confidence 44 222333333333344445555555666666554433 15555555555
Q ss_pred HHhhhhhHHhh-hhhhhccccchhHHH-HHHHHHHHHHHH
Q 042477 159 GVCSGSLLGIT-LMSYIQDTFGWVIGF-AIPTIAMLTSTA 196 (478)
Q Consensus 159 ~~~~G~~ig~~-~~~~i~~~~g~~~~f-~~~~~~~~~~~~ 196 (478)
+.+++++++|. .-+.....++|...| .+.+.++.+..+
T Consensus 412 ~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~~~~~~~~ 451 (495)
T KOG2533|consen 412 GTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAACVGIVLL 451 (495)
T ss_pred chhHHHHhhhhhcccccCcchhhhhHHHHHHHHHHHHHHH
Confidence 55555555433 334455567888888 333333333333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.2e-06 Score=91.28 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=100.1
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
....++.+..+.++. -.......+...++.+++.++.||+ |||+.++.+.++..+..+.+..... ....++ ...+
T Consensus 274 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~ 348 (451)
T PF00083_consen 274 YYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICSLILGIIFF-LGVSSS-SWWS 348 (451)
T ss_pred ccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccccccccccccc-cccccc-cccc
Confidence 333444456666665 2222233355667777888999996 9999999999888887777651100 000000 0001
Q ss_pred hHHHHHHHHHHHHhcc-ccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 95 SSFLFLPLSLISLGLA-GYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
... ++...+...+.+ +..+....+.+|.+|.+. |.++.++.+....+++++++.+..+
T Consensus 349 ~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~--------------------R~~~~~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 349 ILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKV--------------------RSTGIGLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred ccc-ceeeeeccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccc
Confidence 111 122222222222 344667788899999888 9999999999999999999988888
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 042477 174 IQDTFGWVIGFAIPTIAMLTSTAFFSFASRF 204 (478)
Q Consensus 174 i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 204 (478)
+.+..+-...|.+.+.+.+++.++.++..|+
T Consensus 408 ~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 408 LFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred ccccccccccchhhHHHHHHHHhheeEEEee
Confidence 8776663444555555555555554444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=74.09 Aligned_cols=156 Identities=12% Similarity=-0.015 Sum_probs=119.9
Q ss_pred hhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCC
Q 042477 11 GVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPAN 90 (478)
Q Consensus 11 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~ 90 (478)
-+..+|.-++ ++++-.+.-.|-+...-..+=.++-++.+++..|+ |+-+++..+++..++=.+.++..
T Consensus 389 lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 389 LVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh----------
Confidence 3444555555 45664444445333333345556667889999995 99999999999999999998888
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH-HHhhhhhHHhh
Q 042477 91 TTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF-GVCSGSLLGIT 169 (478)
Q Consensus 91 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~ig~~ 169 (478)
.|+|+....-+++|+..+.++.++.+++.+..|++- |.++.++... --.+|-.+|.+
T Consensus 457 --~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l--------------------~at~Q~l~~g~f~GlG~g~Gsl 514 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL--------------------RATAQGLLQGIFHGLGKGLGSL 514 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc--------------------hHHHHHHHHHHhcccCcchhhh
Confidence 788888888999999999999999999999999887 6777777433 34788888889
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 042477 170 LMSYIQDTFGWVIGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 170 ~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 200 (478)
++|.+.+.+|-+..|.+.++..++.++++..
T Consensus 515 IGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 515 IGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred hhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999898888887766655554443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=73.47 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=111.0
Q ss_pred hhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhc---cchhHHH-HHHHHHHHHhhHHhhhcc
Q 042477 6 RFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSY---WDRHSTI-LAFSFIYVLGLMALTSTA 81 (478)
Q Consensus 6 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Gr~~~i-~~~~~~~~ig~~l~~~~~ 81 (478)
+|+|-.=.+++++|++ .+|.+-.-.+.+-...-+...+.+|+.|..+||. +||||-+ ..+.+..+++.++...++
T Consensus 45 qf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aa 123 (498)
T KOG0637|consen 45 QFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAA 123 (498)
T ss_pred HHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHh
Confidence 4555555667888885 7898888888777777788999999999999975 6888864 456666777877777664
Q ss_pred cccc-cCCCC----CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhH
Q 042477 82 FAWA-ESPAN----TTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWW 156 (478)
Q Consensus 82 ~~~~-~~~~~----~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (478)
.... ..+.. .+.....++++.-+.-+..-..+...-++.+|....++. +.++.+++
T Consensus 124 Dig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-------------------~~~Ans~f 184 (498)
T KOG0637|consen 124 DIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-------------------KTRANSVF 184 (498)
T ss_pred hhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-------------------hhccchhH
Confidence 3222 22222 124567778888888888888889999999999876651 22299999
Q ss_pred HHHHhhhhhHHhhhhhhh
Q 042477 157 YFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 157 ~~~~~~G~~ig~~~~~~i 174 (478)
.+...+|..+|...++|.
T Consensus 185 ~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 185 SFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHhcceeeeeccccc
Confidence 999999999998887754
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.14 Score=52.89 Aligned_cols=59 Identities=20% Similarity=0.141 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHH
Q 042477 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLIS 465 (478)
Q Consensus 407 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~ 465 (478)
+...++...++-=+|--....+..-+..|.+|++.||..+|+.+..+++-..+.-.+.-
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555655666788888999999999999999999999888776655543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0026 Score=65.83 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=74.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHH
Q 042477 367 ISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGF 446 (478)
Q Consensus 367 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 446 (478)
.+.++.+.++.+..++..++..+. .+.+.+.+.-+++|++|+... +.+.++++.+|++.|++++
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa---------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~rat 152 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLG---------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAA 152 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHH
Confidence 445567788888888877777764 267788889999999999999 9999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhh
Q 042477 447 ALYTSVFGVGSFLSALLISVIE 468 (478)
Q Consensus 447 g~~~~~~~~g~~lg~~i~~~~~ 468 (478)
|+++....+|.++++.+.+.+.
T Consensus 153 si~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 153 AYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=67.14 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=126.3
Q ss_pred chhhhhhhhhhhHHHHHHhhh-hcCCChh------h----HhhHHHhhHHHHhhhhhhhhHHhhhccch-hHHHHHHHHH
Q 042477 2 AGKERFAFKGVASNLVTYLTD-VMKMSNS------S----AAKTVSSWNGLTSMLPLLLAPLADSYWDR-HSTILAFSFI 69 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~-~l~~~~~------~----~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-~~~i~~~~~~ 69 (478)
+++.=++++....+.+.|+.+ .++-++. + ..+....+.+.+.+.+++--++.+|+ |+ |++..++.++
T Consensus 267 qffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-g~~k~~~~~s~~~ 345 (477)
T TIGR01301 267 TCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-GAGKRLWGIVNII 345 (477)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence 455666777777777777764 3543321 1 23445555566667777888899995 84 7777899888
Q ss_pred HHHhhHHhhhcccccc----------cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccc
Q 042477 70 YVLGLMALTSTAFAWA----------ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLD 139 (478)
Q Consensus 70 ~~ig~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (478)
.+++++...+....+. ...++ ....+..++...+.|+..+.....-.+++++..+++..+
T Consensus 346 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~--------- 415 (477)
T TIGR01301 346 LAICLAATVLVTYVAKNSRYYDGDGESLPPP-TGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAG--------- 415 (477)
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCcc-hhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCC---------
Confidence 8888877764321000 00000 011466677777899999999999999999998854422
Q ss_pred cccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccc--hhHHHHHHHHHHHHHHHHHHhhccc
Q 042477 140 NQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFG--WVIGFAIPTIAMLTSTAFFSFASRF 204 (478)
Q Consensus 140 ~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~ 204 (478)
.|..+++.+..+.+...+..+..|.+.+.+| -...+.+.++..+++.++.++..|+
T Consensus 416 ---------~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 416 ---------QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred ---------CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 6999999999999999999887777544443 4567888888888887777766654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.093 Score=54.88 Aligned_cols=135 Identities=7% Similarity=0.012 Sum_probs=80.9
Q ss_pred hhhhcCC-----ChhhHhhHHHhhHHHHhhh-hhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc-cCCCCC-
Q 042477 20 LTDVMKM-----SNSSAAKTVSSWNGLTSML-PLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA-ESPANT- 91 (478)
Q Consensus 20 l~~~l~~-----~~~~~~~~~~~~~~~~~i~-~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~-~~~~~~- 91 (478)
+++.+.. +.....++.+...+...+. .++-+++++|+ +|++.+.+-...+..-.++....-.|.. ..+|+.
T Consensus 29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 3455555 3345666666665555554 78889999996 9999988766666665555444311110 001000
Q ss_pred --------cc---------chHHHHHHHHHHHHhcccccc-chhhhhhccCCCCCCCCcccccccccccccccccchhhh
Q 042477 92 --------TS---------CSSFLFLPLSLISLGLAGYNP-SLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFF 153 (478)
Q Consensus 92 --------~~---------~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 153 (478)
+. +.|...+.-+...+=.....+ ....+..|.++.++ -.|.+
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q--------------------akRfy 167 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE--------------------AKRFY 167 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--------------------HHHHH
Confidence 00 011111111122222222222 66788999998877 67999
Q ss_pred hhHHHHHhhhhhHHhhhhhhhc
Q 042477 154 KWWYFGVCSGSLLGITLMSYIQ 175 (478)
Q Consensus 154 ~~~~~~~~~G~~ig~~~~~~i~ 175 (478)
+.+..+.|+|..+|+.+..++.
T Consensus 168 ~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 168 ALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.19 Score=50.31 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=50.5
Q ss_pred CccchHH-HHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 042477 403 AKPITIF-WLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIE 468 (478)
Q Consensus 403 ~~~~~~~-~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~ 468 (478)
..+.... .++..|.+.+...-......+++..+++|+..-|++|.+.|...++|+..=..+...+.
T Consensus 363 ~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~ 429 (510)
T KOG3574|consen 363 TFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLA 429 (510)
T ss_pred ceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhc
Confidence 3344333 34446888888888888999999999999999999999999999998765555544443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=56.70 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=83.7
Q ss_pred hhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccc
Q 042477 32 AKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAG 111 (478)
Q Consensus 32 ~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 111 (478)
-.-.++......+.+++++.+.++. |.|+++++|.+.+++-..... . .+.+.++.+-++.|+|.+.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~-~------------~~~~~l~~~s~l~G~~~a~ 105 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFF-Y------------PNSYTLYPASALLGFGAAL 105 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-h------------hhHHHHHHHHHHHhhhhHH
Confidence 3445556666778888888999995 999999999998886544432 2 4578889999999999999
Q ss_pred cccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 112 YNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
.+++...++.+..++++ |++..++++...+.+.++|.++.
T Consensus 106 lW~aqg~ylt~~s~~~~--------------------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 106 LWTAQGTYLTSYSTEET--------------------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hhHhhhHHHHHcCCHHH--------------------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877665 78888888888788777775554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0022 Score=68.24 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=86.1
Q ss_pred hhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHH--H
Q 042477 22 DVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFL--F 99 (478)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~--~ 99 (478)
+..|.+... .+..........++..++.++.||+ |||+.++.|.....++.++++.................+.. .
T Consensus 323 ~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
T KOG0254|consen 323 KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVF 400 (513)
T ss_pred HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHH
Confidence 345554332 4444444566677777889999996 99999999999999999988866322111100000111111 1
Q ss_pred HHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhccccc
Q 042477 100 LPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFG 179 (478)
Q Consensus 100 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~g 179 (478)
+...+..+.. +..|....+.+|.+|.+- |+++.++-.....+...+-...........+
T Consensus 401 ~~~~v~~f~~-g~g~v~w~~~sEifp~~~--------------------r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~ 459 (513)
T KOG0254|consen 401 LCLFIFSFAI-GWGPVPWVIVSEIFPLRL--------------------RSKGASLAVAVNWLWNFLISFFFPFITEALG 459 (513)
T ss_pred HHHHHHHHhc-ccccchhhhhhccCcHhH--------------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222222222 333555568899999877 7888877544444444433222223333333
Q ss_pred hhHHHHHHHHHHHHHHH-HHHhhcc
Q 042477 180 WVIGFAIPTIAMLTSTA-FFSFASR 203 (478)
Q Consensus 180 ~~~~f~~~~~~~~~~~~-~~~~~~~ 203 (478)
+...|........+... ..++..|
T Consensus 460 ~~~~f~~f~~~~~~~~~~fv~~~~p 484 (513)
T KOG0254|consen 460 IGGTFGYFGGICLLSLIIFVFFFVP 484 (513)
T ss_pred ccchHHHHHHHHHHHHHHHheEEcc
Confidence 34445444444444444 3444444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=63.12 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=103.4
Q ss_pred hhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccch-hHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHH
Q 042477 21 TDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDR-HSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLF 99 (478)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (478)
.+.+|+++.|.|.+++.-.+...+.+..-....||..|. +-.+..++....-..+++... .....++
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~------------~~~~~l~ 356 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA------------RTPVVLY 356 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc------------ccchhhh
Confidence 457999999999999988888888888888889987443 344555555555566666666 5678889
Q ss_pred HHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc
Q 042477 100 LPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD 176 (478)
Q Consensus 100 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~ 176 (478)
.+..+-.+..+...|+...++....|.++ |+.+.+.......++-++||+++|.+..
T Consensus 357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q--------------------rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQ--------------------RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCccc--------------------chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 99999999999999999999999999877 9999999999999999999999988754
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00082 Score=68.28 Aligned_cols=170 Identities=15% Similarity=0.046 Sum_probs=116.8
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhh--------HHHhhHHHHhh-hhhhhhHHhhhccchhHHHHHHHHHHHHh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAK--------TVSSWNGLTSM-LPLLLAPLADSYWDRHSTILAFSFIYVLG 73 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~--------~~~~~~~~~~i-~~~~~G~laD~~~Gr~~~i~~~~~~~~ig 73 (478)
|+-.+++|+...+...-++ ..|+.+.+... .-.+......+ +..++.++.|+. |||+..+.|.+++++.
T Consensus 314 FllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~~GF~~~~i~ 391 (538)
T KOG0252|consen 314 FLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQLMGFFIMTIF 391 (538)
T ss_pred HhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHHhhHHHHHHH
Confidence 3445677777666665554 45554433222 11222222222 556778899995 9999999999999998
Q ss_pred hHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhh
Q 042477 74 LMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFF 153 (478)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 153 (478)
.+.++..-.. .. .....+...-+.+-++.-+-..+...+-+|.||... |+...
T Consensus 392 ~~~~~~~y~~----~~---~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv--------------------R~t~h 444 (538)
T KOG0252|consen 392 FFVIAGPYNQ----LE---NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV--------------------RSTCH 444 (538)
T ss_pred HHHHcCCccc----cc---ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH--------------------hhhhh
Confidence 8877766210 01 122223233333445555666677777899999887 99999
Q ss_pred hhHHHHHhhhhhHHhhhhhhhcc-----ccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 154 KWWYFGVCSGSLLGITLMSYIQD-----TFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 154 ~~~~~~~~~G~~ig~~~~~~i~~-----~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
++.....-.|+.+|.....++.+ ..+.+..|++.+.++++..+..++.
T Consensus 445 GIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 445 GISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred hHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 99999999999999999899988 7899999999988888887765554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0045 Score=48.38 Aligned_cols=71 Identities=23% Similarity=0.103 Sum_probs=61.9
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTST 80 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~ 80 (478)
.||+|= .+-+.++++.++|..+.+++-+.+.+++.++.+...++.++. .+++.+..++++..+..+.+++.
T Consensus 7 gRFayT----plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 7 GRFAYT----PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHH----hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 344566789999999999999999999999999999999995 88999999999999999988887
|
Note that many members are hypothetical proteins. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.034 Score=59.58 Aligned_cols=136 Identities=10% Similarity=-0.065 Sum_probs=89.9
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChh---hHhhHHHhhHHHHhhhhhhhhHHhhhccchhHH-HHHHHHHHHHhhHHhh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNS---SAAKTVSSWNGLTSMLPLLLAPLADSYWDRHST-ILAFSFIYVLGLMALT 78 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~---~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~-i~~~~~~~~ig~~l~~ 78 (478)
|.+...||++...-|......++-++. ..++....+.++..++..+.|.+.-+. +|-|- ++++..+.+++..+++
T Consensus 320 fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 320 FISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHH
Confidence 455666887777777777666666553 567888888888888888899999874 76654 4577777776656555
Q ss_pred hcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHH
Q 042477 79 STAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYF 158 (478)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (478)
.... .+....+...++.|+|.|...........-..|+++ .+.+.++...
T Consensus 399 ~~~~----------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~--------------------ig~a~gL~~s 448 (599)
T PF06609_consen 399 AVRP----------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED--------------------IGTATGLTGS 448 (599)
T ss_pred HccC----------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH--------------------HHHHHHHHHH
Confidence 4422 344445566777888888766555555555556544 6666666655
Q ss_pred HHhhhhhHHhh
Q 042477 159 GVCSGSLLGIT 169 (478)
Q Consensus 159 ~~~~G~~ig~~ 169 (478)
.-.+|+.+|..
T Consensus 449 ~R~~GGsIg~a 459 (599)
T PF06609_consen 449 IRSIGGSIGYA 459 (599)
T ss_pred HHHHhhHHHHH
Confidence 55665555544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0033 Score=68.61 Aligned_cols=128 Identities=12% Similarity=0.085 Sum_probs=92.6
Q ss_pred chhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--Hhhhh--------
Q 042477 329 PATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETK--RLQRS-------- 398 (478)
Q Consensus 329 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~-------- 398 (478)
.+++.+...+...+..++...+. + +.++++.+++|.++++++.++.++..-. +|+..
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~----~---------r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFG----T---------KLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhh----c---------ccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence 45566666666666666655432 2 3455667899999999998888765311 11100
Q ss_pred ------------------------ccCCCc--cchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHH
Q 042477 399 ------------------------KQAEAK--PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSV 452 (478)
Q Consensus 399 ------------------------~~~~~~--~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 452 (478)
.+.+.. ...+..+++.-++.|+|++...+...+++.|.+|++.|+++.|+++..
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 000000 113456677889999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhh
Q 042477 453 FGVGSFLSALLISVIEF 469 (478)
Q Consensus 453 ~~~g~~lg~~i~~~~~~ 469 (478)
..+|..+|+.+.+.+.+
T Consensus 217 ~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 217 AVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred HHhhhHHHHHHHHHHHh
Confidence 99999999999887764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=61.21 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCch--hHHHH
Q 042477 368 SVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVR--MRTMG 445 (478)
Q Consensus 368 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~ 445 (478)
++++.+.+|.++.+++.++..... .+...+.+...+..+|.+...+...++..|..|++ .|+++
T Consensus 74 Grrr~iliG~il~~lg~lll~~~~--------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sg 139 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGASE--------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG 139 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhh--------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccce
Confidence 555667888888888876554321 11122333444555666777777788999999975 79999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhc
Q 042477 446 FALYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 446 ~g~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
.++.....++|+.+++.+.+.+.+.
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~ 164 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEE 164 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.008 Score=64.53 Aligned_cols=149 Identities=7% Similarity=0.040 Sum_probs=105.3
Q ss_pred Hhhhhc-CCCh-hhHhh-HHHhhHHHHhhhhhhhhHHhhhccchhH---------HHHHHHHHHHHhhHHhhhccccccc
Q 042477 19 YLTDVM-KMSN-SSAAK-TVSSWNGLTSMLPLLLAPLADSYWDRHS---------TILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 19 yl~~~l-~~~~-~~~~~-~~~~~~~~~~i~~~~~G~laD~~~Gr~~---------~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
++.+.+ |.+. .+... .++.++++++++.+.+|+++.. +-||+ .+.+..+ ..++++++.+.
T Consensus 378 qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~------ 449 (591)
T PTZ00207 378 FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPITIALFIPSV-CIITMLTLFLT------ 449 (591)
T ss_pred HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchhHHHHHHHH-HHHHHHHHHHH------
Confidence 444667 6633 32233 7899999999999999999833 23333 2334444 66777777766
Q ss_pred CCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 87 SPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
.....++++-++.|++.|...+...+...|+|- ++ -++.++......-+|+.+
T Consensus 450 ------~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~--------------------~g~~yN~~~~a~pigs~~ 502 (591)
T PTZ00207 450 ------LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KD--------------------PAKHYNFCFLGSVLSAIF 502 (591)
T ss_pred ------CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc--------------------hHHHhhHHhHHHHHHHHH
Confidence 223689999999999999999999999999999 66 678888888888888876
Q ss_pred H-hhhhhhhccc-------------cchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 167 G-ITLMSYIQDT-------------FGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 167 g-~~~~~~i~~~-------------~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
- -.+.|.+-|. .-++.+|++.+.+.+++.++.....
T Consensus 503 ~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 503 LNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 4 3344544221 2478888888777766666544443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.13 Score=45.27 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=69.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHH
Q 042477 367 ISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGF 446 (478)
Q Consensus 367 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 446 (478)
.++++.+.+|.++..+-..... ..+.+.+++.-++.|++..+.....-.++.+...++.|++..
T Consensus 64 lg~K~sm~lg~~~y~~y~~~~~----------------~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~ 127 (156)
T PF05978_consen 64 LGPKWSMILGSLGYAIYIASFF----------------YPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNT 127 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHH
Confidence 4455666666665554332221 235678899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhc
Q 042477 447 ALYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 447 g~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
++++...+.+.+.|..+.-.+.+.
T Consensus 128 ~ifw~i~~~s~i~G~~~~~~~~~~ 151 (156)
T PF05978_consen 128 GIFWAIFQSSLIFGNLFLFFIFQG 151 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998877766443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.024 Score=59.16 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=107.5
Q ss_pred HHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhh-HHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 17 VTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLA-PLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 17 ~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G-~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
+.|+...++++..+.+...+...+...+..++.. .+.-. +|-|+++..|++...++....+++ ++.
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~------------~~~ 331 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA------------TET 331 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh------------ccc
Confidence 4677778999999999999999999999999887 66666 599999999999999999999999 778
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 96 SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 96 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
++.+...++.++. +...|...++.+.+.++++ +++.+++......+...++|.+-+.+
T Consensus 332 w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e--------------------~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 332 WMMFAAGVVVALA-GIVFPAIRAFASILVSPEE--------------------QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhhhHHHHHHHhh-cchhHHHHhHHHhhccccc--------------------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 8888777766554 5667999999999999888 99999999999999999998887655
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.3 Score=52.03 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=85.2
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHh---hHHhhhcccccccCCCCC
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLG---LMALTSTAFAWAESPANT 91 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig---~~l~~~~~~~~~~~~~~~ 91 (478)
...-.+...+|-+..+.+.+++.+..+..+++.++|+++++. -|+.. .+-+.+..++ ..++... .++.
T Consensus 36 ~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~l~~~~~~~ll~~~-~~~~------ 106 (521)
T PRK03612 36 LLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLALLGGLSALILYAA-FAFQ------ 106 (521)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHHHHHHHHHHHHHHH-HHHH------
Confidence 344445556888888899999999999999999999887553 33322 2221111111 1111111 0000
Q ss_pred ccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhh
Q 042477 92 TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLM 171 (478)
Q Consensus 92 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~ 171 (478)
......++...++.++-.|+..|....+..+... ++ .++..+..|....+|+++|.++.
T Consensus 107 ~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~--------------------~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 107 GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH--------------------LGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc--------------------hhhhhhhhHhHHhHHHHHHHHHH
Confidence 0111222333445566677766666555544322 11 34566777778888888888887
Q ss_pred hhhc-cccchh-HHHHHHHHHHHHHHHHHHh
Q 042477 172 SYIQ-DTFGWV-IGFAIPTIAMLTSTAFFSF 200 (478)
Q Consensus 172 ~~i~-~~~g~~-~~f~~~~~~~~~~~~~~~~ 200 (478)
+++. ..+|-. ..+.+..+..++++++.+.
T Consensus 166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 166 PFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 7653 456754 4444444444444333333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.25 Score=52.55 Aligned_cols=103 Identities=10% Similarity=0.001 Sum_probs=73.1
Q ss_pred hhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhc
Q 042477 43 SMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGAD 122 (478)
Q Consensus 43 ~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 122 (478)
.......+...|+. |||.....+.++..++++...+.... ...+...+...+...+.+...-....+.+|
T Consensus 364 ~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 433 (521)
T KOG0255|consen 364 LPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDD---------LGGWLHWILPLLGKFFIGSAFNLIFLYSAE 433 (521)
T ss_pred hhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444558899996 99999999999999999998888321 110122222223333333334455888899
Q ss_pred cCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhc
Q 042477 123 QMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQ 175 (478)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~ 175 (478)
.+|+.. |..+.+.......+|++++|.+.....
T Consensus 434 l~pt~~--------------------r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 434 LIPTVV--------------------RNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred hccHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999877 999999999999999999988865443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=5.4 Score=40.67 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042477 406 ITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466 (478)
Q Consensus 406 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~ 466 (478)
.+-+|.++...++|+..+-.....+.++-+.+|++.+-.+-.+..++...|-+.|..+.-+
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3557777788889999999999999999999999999999888888888888888876543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.25 Score=51.50 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=74.3
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccc-hH
Q 042477 330 ATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPI-TI 408 (478)
Q Consensus 330 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 408 (478)
++..+...+...++.|.++.. +.|..+-++.+..|.+++.+|-++....+.. +. ..
T Consensus 74 G~viaa~slg~~i~~liF~~W------------s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~-----------~~~~~ 130 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIW------------SNKTGSVKKPLIVSFLIAIIGNLLYLALAYV-----------PNGVK 130 (488)
T ss_pred hHHHHHHHHHHHhcchhhccc------------ccccCCcccCHHHHHHHHHHHHHHHHHHHhc-----------ccchH
Confidence 445555666666666666542 1123334677999999999999998666531 23 67
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042477 409 FWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466 (478)
Q Consensus 409 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~ 466 (478)
|++.+..++.|+|.+-... .-.|+++..-.+.|.++++..+....+|.++||.+-..
T Consensus 131 y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 131 YLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 8899999999999665543 44677775555556666666666666666666654443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=94.66 E-value=6.7 Score=41.09 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHH
Q 042477 408 IFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLI 464 (478)
Q Consensus 408 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~ 464 (478)
...++..+++..+..-..+++..++-++++.+..-|++|.+.|...++|+..-..++
T Consensus 405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~v 461 (544)
T PF13000_consen 405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFV 461 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHH
Confidence 345667889999999999999999999999999999999999999999986665444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.6 Score=42.66 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042477 406 ITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISV 466 (478)
Q Consensus 406 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~ 466 (478)
.++|.+....++-|+-.+..++..+--+.++.+++.|-.+|+...+..++|-.++..+.--
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 4666666666666776677777777888899999999999999999999998888876543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.25 Score=50.59 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=64.6
Q ss_pred hcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHH
Q 042477 23 VMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPL 102 (478)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (478)
.-|+++..+|.+.......+.+++++.|.++||.-.-|+++++......++.+.+...... +...+.++.--
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~--------~~~~viv~~t~ 366 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF--------LGDSVIVFTTC 366 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------CCceEehhhhH
Confidence 4667788899999999999999999999999997333445555555555553222222111 13445555566
Q ss_pred HHHHHhccccccchhhhhhccCCCC
Q 042477 103 SLISLGLAGYNPSLQAFGADQMDNN 127 (478)
Q Consensus 103 ~l~g~g~g~~~~~~~~~~~~~~~~~ 127 (478)
.+.|+..-+..|.-.-+..|..-+.
T Consensus 367 ~~~g~~~~~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 367 GLLGFFGTGYLPIGFELGVETTYPV 391 (480)
T ss_pred HHHHHhhcCCCCcceeeeeeecccc
Confidence 6677777777787777777755433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.49 Score=49.17 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=71.5
Q ss_pred HhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCC------ccchHHHHHHHHHHHHhccccccchhhhhhccCC
Q 042477 52 LADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANT------TSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMD 125 (478)
Q Consensus 52 laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 125 (478)
-.+++ ||++++.++..+..++.++.-++-+..+..++++ +++.....+.-++.|+|-+..+.....++++.+|
T Consensus 305 rir~f-g~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~ 383 (461)
T KOG3098|consen 305 RIRGF-GRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP 383 (461)
T ss_pred hhhhc-ccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 34664 9999999999999999888877743222212211 2345566667778899999999999999999995
Q ss_pred CCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 126 NNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
++ |..+++++-+-..+++.++-...+
T Consensus 384 -~~--------------------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 384 -DD--------------------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred -Cc--------------------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34 778888887777777776544433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.40 E-value=11 Score=39.14 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 407 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
+.++.++..+++|+..+......+.+..+.++++.|..+-.+..++-.+|-..|+.+.-.+..
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~~ 433 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFVA 433 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666678899999999999999999999999999999999999999999999887655543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.5 Score=41.97 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHH
Q 042477 366 GISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMG 445 (478)
Q Consensus 366 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~ 445 (478)
+.+|+..+.+|.++..+|+.+.......+. ...+.|.+.+...+.+.+..+.......-..+.+|+ .||++
T Consensus 62 ~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i--------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~v 132 (250)
T PF06813_consen 62 RFGPWVVLLIGAVLGFVGYGLLWLAVSGRI--------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTV 132 (250)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhCcc--------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCce
Confidence 456677788999999999877765432111 124556666666666677777766766777789996 59999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhh
Q 042477 446 FALYTSVFGVGSFLSALLISVIE 468 (478)
Q Consensus 446 ~g~~~~~~~~g~~lg~~i~~~~~ 468 (478)
.|+.-....+++.+-+.+...+.
T Consensus 133 vgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 133 VGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred ehhhhHHHHhHHHHHHHHHHHHc
Confidence 99999999998887776655443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.1 Score=46.62 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=88.1
Q ss_pred hHhhHHHhhHHHHhhhhhhhhHHhhhccchh-------HHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHH
Q 042477 30 SAAKTVSSWNGLTSMLPLLLAPLADSYWDRH-------STILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPL 102 (478)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~-------~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (478)
..++.-+...+...++.|+..++--+. +|+ .-+-+++.+...+.+++....... -++....+.++++...
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~--~~~~~~~s~~~lil~y 401 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF--GGPSGLVSVWWLVLSY 401 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCcCHHHHHHHH
Confidence 345666677777777787777777763 444 235667777777777766552100 0111126788999999
Q ss_pred HHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhh
Q 042477 103 SLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMS 172 (478)
Q Consensus 103 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 172 (478)
+++++|.=...|.-.++++...|+.- .+..++.+.+....|..++..+.+
T Consensus 402 ~l~s~gEL~iSpvGLs~~t~laP~~~--------------------~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 402 VLQSFGELFISPVGLSMVTKLAPPAL--------------------KSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHhCHHHHHHHHHhChHHH--------------------HHHHHHHHHHHHHHHHHhhceecc
Confidence 99999999999999999999999876 889999999888888888877766
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.2 Score=44.22 Aligned_cols=142 Identities=13% Similarity=0.053 Sum_probs=100.9
Q ss_pred HHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccc
Q 042477 15 NLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSC 94 (478)
Q Consensus 15 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~ 94 (478)
.+..|+... |+++...|..=+.-.+....+.....++.+|+ |.-|+=..++........+...+-..+. .+....+
T Consensus 280 lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~--~~~~~~s 355 (432)
T PF06963_consen 280 LMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG--SPFSSIS 355 (432)
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC--CCchhhH
Confidence 467888765 99999999999998899999999999999996 9999988888877665555544422111 1100134
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhh
Q 042477 95 SSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYI 174 (478)
Q Consensus 95 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i 174 (478)
...++.+.++-=+|.=++=-+..-++.|..|+++ |+...+......++-.++-..++-..
T Consensus 356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~--------------------Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE--------------------RGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH--------------------hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555446666666777888888888777 99999999999998888775554333
Q ss_pred c--cccch
Q 042477 175 Q--DTFGW 180 (478)
Q Consensus 175 ~--~~~g~ 180 (478)
. ++++|
T Consensus 416 ~~P~~F~~ 423 (432)
T PF06963_consen 416 PRPSQFGW 423 (432)
T ss_pred CChHhcCh
Confidence 2 34554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=89.98 E-value=8.5 Score=40.61 Aligned_cols=128 Identities=9% Similarity=0.059 Sum_probs=71.0
Q ss_pred hhhHhhHHHhhHH-HHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc-cCCCCC---------ccch-
Q 042477 28 NSSAAKTVSSWNG-LTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA-ESPANT---------TSCS- 95 (478)
Q Consensus 28 ~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~-~~~~~~---------~~~~- 95 (478)
+.....+-....+ ...++..+-.+++|++ +|.++..+....+..-..+.++--.|-. ..+++. +.+.
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 3334444443333 3456677889999996 9999887666555554444443311110 111110 0111
Q ss_pred --------HHHHHHHHHHH-HhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhH
Q 042477 96 --------SFLFLPLSLIS-LGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLL 166 (478)
Q Consensus 96 --------~~~~~~~~l~g-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i 166 (478)
|.+.+.-+... .|.-...-....+..|.++.++ -.|.++.+..+.|+|.++
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e--------------------AKRfYpl~g~ganigli~ 195 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE--------------------AKRFYPLFGLGANIGLIF 195 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--------------------HHHHHHHHHHHHHHHHHH
Confidence 11111111111 1111111234677778887766 679999999999999999
Q ss_pred Hhhhhhhhcc
Q 042477 167 GITLMSYIQD 176 (478)
Q Consensus 167 g~~~~~~i~~ 176 (478)
+..+..++.+
T Consensus 196 sG~~~~~~~~ 205 (491)
T PF03219_consen 196 SGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHH
Confidence 9888877765
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=89.69 E-value=20 Score=34.41 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=37.8
Q ss_pred chhhhhhHHHHHhhhhhHHhhhhhhh---c--cccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 149 KSLFFKWWYFGVCSGSLLGITLMSYI---Q--DTFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 149 r~~~~~~~~~~~~~G~~ig~~~~~~i---~--~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
|+.......+..|+|.++.-.....- . -.-.|++.+.+.+++.++-++++.+.-++.
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66777777788899988774332111 1 123599999888888777777666665443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.98 Score=46.94 Aligned_cols=155 Identities=12% Similarity=0.004 Sum_probs=91.1
Q ss_pred hhcC---CChhhHhhHHHhhHHHHhhhhhhh-hHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc-CCCCCccchH
Q 042477 22 DVMK---MSNSSAAKTVSSWNGLTSMLPLLL-APLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE-SPANTTSCSS 96 (478)
Q Consensus 22 ~~l~---~~~~~~~~~~~~~~~~~~i~~~~~-G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~-~~~~~~~~~~ 96 (478)
+.++ +++...+.+..+..++..++..+- -++.|+ .-|+++....++.++..+.-.+--..+.. .+. +..+
T Consensus 245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~--~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi---~d~~ 319 (433)
T PF03092_consen 245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW--SWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGI---PDQW 319 (433)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCc---CCeE
Confidence 3455 777777777755556666665544 444543 66777777777666655443322111110 000 1123
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc
Q 042477 97 FLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD 176 (478)
Q Consensus 97 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~ 176 (478)
+.+..-++..+-.+...-....+.++..|+.. -++.+++.....|+|..++..++..+.+
T Consensus 320 f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~--------------------Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 320 FALGDTILEEVIGMIAFMPSLVLAARLCPKGS--------------------EGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555566678899999877 6899999999999999999888887755
Q ss_pred ccc--------hhHHHHHHHHHHHHHHHHHHhh
Q 042477 177 TFG--------WVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 177 ~~g--------~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
.++ -++..+++....++.+.+..+.
T Consensus 380 ~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lL 412 (433)
T PF03092_consen 380 LFGVTRDDFSNLWLLILICSVIQLLPLPLLFLL 412 (433)
T ss_pred HcCCCcccccchHHHHHHHHHHHHHHHHHHHHc
Confidence 443 2334444555554444444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.077 Score=56.68 Aligned_cols=128 Identities=11% Similarity=0.089 Sum_probs=2.9
Q ss_pred CchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--h--hhhc----
Q 042477 328 PPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKR--L--QRSK---- 399 (478)
Q Consensus 328 ~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~--~~~~---- 399 (478)
..+.+...+-+..++...++..+ .+ +-+++|.++.|.++++++.++.++.+-.. | +..+
T Consensus 39 ~~G~i~s~~di~~~~~~~~vsy~----g~---------~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 39 QSGLISSSYDIGSLVVVLFVSYF----GG---------RGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hh---------hcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 34555666666666666555543 22 23456789999999999998887543221 1 1000
Q ss_pred --------c-------------------CCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHH
Q 042477 400 --------Q-------------------AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSV 452 (478)
Q Consensus 400 --------~-------------------~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 452 (478)
+ ++......+++++.-++.|+|..-.++...+|+.|.++++.-+.+.|+....
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 0 0011224567788889999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhh
Q 042477 453 FGVGSFLSALLISVIE 468 (478)
Q Consensus 453 ~~~g~~lg~~i~~~~~ 468 (478)
..+|-.+|-.+.+..-
T Consensus 186 ~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 186 SILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------
T ss_pred hhccHHHHHHHHHHHH
Confidence 9999888877776543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.94 Score=49.55 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=77.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhc-----c-----------------------CCC---ccc--hH
Q 042477 366 GISVMQRMRIGMFLTSIAMVIAAAVETK----RLQRSK-----Q-----------------------AEA---KPI--TI 408 (478)
Q Consensus 366 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~-----~-----------------------~~~---~~~--~~ 408 (478)
+..+++.+++|.++++++.++.++.+-. .++... + +.. ... .+
T Consensus 158 r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (735)
T KOG3626|consen 158 RGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPF 237 (735)
T ss_pred ccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhH
Confidence 4455678999999999999998876322 111111 0 000 111 23
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 409 FWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 409 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
..+++.-++.|+|+.-..+...+|+.|.+.++.-..+.|+......+|=++|-.+.++..+
T Consensus 238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566778899999999999999999999999999999999999999998888888776654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=86.39 E-value=2.9 Score=42.26 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCch---hHHHHHH
Q 042477 371 QRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVR---MRTMGFA 447 (478)
Q Consensus 371 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~~~g 447 (478)
+.+.+|.++..+|++++.+..... ......+.+.+.+...+.++|.+..-|....+..|+.+++ .|..+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPP------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSS------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcc------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 457788889999988865542100 0011234567788888999999999999999999999876 5777788
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhc
Q 042477 448 LYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 448 ~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
.+....++|+.++..+.+.+++.
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~ 98 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQN 98 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHC
T ss_pred HHHHHHhhhhHhhcccchhhccc
Confidence 88999999999999888887743
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.3 Score=42.74 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 042477 284 KILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQF 363 (478)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~ 363 (478)
+++++...+.....+.|..-.++.+.+..+ ....+. -...++...++..++.+|+.+...+....|.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk-------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~----- 98 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHK-------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRY----- 98 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc-------cccccccccccccceeccccccccccccccc-----
Confidence 445555555556666677766666555432 223322 1234556667778888888887766544433
Q ss_pred CCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc--CCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCch
Q 042477 364 KKGISVMQR-MRIGMFLTSIAMVIAAAVETKRLQRSKQ--AEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVR 440 (478)
Q Consensus 364 ~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 440 (478)
+++|. +..+.+..++++.+....-...+...++ .....-.+...++.+.++=+....+..+.-++..+..-.+
T Consensus 99 ----GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d 174 (498)
T KOG0637|consen 99 ----GRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGD 174 (498)
T ss_pred ----ccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccCh
Confidence 33333 5556666666666555443322221111 1122334555556666666666667777778888877766
Q ss_pred hHHH-HHHHHHHHHhHHHHHHHHHHH
Q 042477 441 MRTM-GFALYTSVFGVGSFLSALLIS 465 (478)
Q Consensus 441 ~rg~-~~g~~~~~~~~g~~lg~~i~~ 465 (478)
.+-+ +++.+.++.++||.+|-.+.+
T Consensus 175 ~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 175 AKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhhccchhHHHHHHhcceeeeeccc
Confidence 6666 999999999999999877665
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.49 E-value=3.4 Score=41.19 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHH
Q 042477 405 PITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVF 453 (478)
Q Consensus 405 ~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 453 (478)
..++|+.-..|+++.....+..+....-+++....+.-|...|++.+..
T Consensus 323 t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvA 371 (433)
T KOG3810|consen 323 TQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVA 371 (433)
T ss_pred ccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHH
Confidence 4578999999999988888888888888888888888999999988754
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.20 E-value=36 Score=31.57 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCc-hhHHHHHHHHHH-HHhHHHHHHHHHHHHhhh
Q 042477 407 TIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPV-RMRTMGFALYTS-VFGVGSFLSALLISVIEF 469 (478)
Q Consensus 407 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~~g~~lg~~i~~~~~~ 469 (478)
..+.++....+.+++.+...+....+..+..|+ +.|+...+.... ...+|..+++.+.+.+..
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666668899999999999999999998 778999888888 577788888866655543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.71 E-value=16 Score=35.40 Aligned_cols=147 Identities=8% Similarity=0.033 Sum_probs=90.1
Q ss_pred cCCChhh--HhhHHHhhHHHHhhhhhhhhHHhhhccchhH---HHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHH
Q 042477 24 MKMSNSS--AAKTVSSWNGLTSMLPLLLAPLADSYWDRHS---TILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFL 98 (478)
Q Consensus 24 l~~~~~~--~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~---~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (478)
+..++.+ -|.+.+.+.+...+++-+..++..|- |.+ .+.+..++......+...... ..|. ..++..-
T Consensus 275 Lspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~Lpilt~~----vsP~-kes~~~s 347 (454)
T KOG4332|consen 275 LSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALLLPILTSS----VSPS-KESPSES 347 (454)
T ss_pred CCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHHHHHHHhc----cCCC-cCCchHH
Confidence 4444444 47888888888888887777776652 222 233333333333333322211 1111 1455555
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcccc
Q 042477 99 FLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTF 178 (478)
Q Consensus 99 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~ 178 (478)
+++..++-.+.|.++|.+..+-.+..|++. |...++++..-.|+=.-++-..--.=....
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEea--------------------rstimNfFRvPLnifvClvLynlh~~~~p~ 407 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEA--------------------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPT 407 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHH--------------------HhhhhhheechhhHhhhhhheecccccCcc
Confidence 777788889999999999999999999877 999999988777765544421100001124
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 042477 179 GWVIGFAIPTIAMLTSTAF 197 (478)
Q Consensus 179 g~~~~f~~~~~~~~~~~~~ 197 (478)
+-|..|-++.+....+.+.
T Consensus 408 ~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 408 TTRNMFGICSAFLFVASIL 426 (454)
T ss_pred ccchhhhhhHHHHHHHHHH
Confidence 5667888887766655443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 478 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 3e-07 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 263 bits (673), Expect = 3e-82
Identities = 100/494 (20%), Positives = 184/494 (37%), Gaps = 72/494 (14%)
Query: 5 ERFAFKGVASNLVTYLTDVM------KMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWD 58
ERF+F G+ + L +L + ++ + A S+ PLL +AD ++
Sbjct: 24 ERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG 83
Query: 59 RHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQA 118
+++TIL S IY +G L + + L LI+LG G P + +
Sbjct: 84 KYNTILWLSLIYCVGHAFLAIFEHS-----------VQGFYTGLFLIALGSGGIKPLVSS 132
Query: 119 FGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTF 178
F DQ D +N F +YF + GS M + F
Sbjct: 133 FMGDQFDQSNKSL-----------------AQKAFDMFYFTINFGSFFASLSMPLLLKNF 175
Query: 179 GWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKA 238
G + F IP + M +T FF +K+ H + K + I+ A GK
Sbjct: 176 GAAVAFGIPGVLMFVATVFF----WLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG 231
Query: 239 -----------------ISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNV--KHA 279
+ I + L +LE + A
Sbjct: 232 NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAA 291
Query: 280 VQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVS 339
V V+ +LR+L ++ ++ F +F Q + + Q M + PA +Q+ +
Sbjct: 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK----PQWFEPAMMQALNPLL 347
Query: 340 IILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSK 399
++LL+P + VL P I+ + ++ +++M G+ +T ++ ++ ++
Sbjct: 348 VMLLIPFNNFVLYPAIE-----RMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM----- 397
Query: 400 QAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 459
++IFW + Y LL ++ EF Y++ P M+ + +T VG+
Sbjct: 398 -DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW 456
Query: 460 SALLISVIEFFTSS 473
L ++ T +
Sbjct: 457 VLLANVSVKSPTVT 470
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 8e-11
Identities = 31/204 (15%), Positives = 76/204 (37%), Gaps = 35/204 (17%)
Query: 5 ERFAFKGVASNLVTYLTDVMK-----MSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDR 59
ERF++ G+ + L+ Y+ ++ ++ ++AA ++ + + + + +AD
Sbjct: 25 ERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA 84
Query: 60 HSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAF 119
+ + +LG + L A + S LF + LI +G P++
Sbjct: 85 RPAVFWGGVLIMLGHIVL---ALPFGAS---------ALFGSIILIIIGTGFLKPNVSTL 132
Query: 120 GADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTFG 179
+ + + + F + FG+ G+ + ++ Q+ G
Sbjct: 133 ------------------VGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174
Query: 180 WVIGFAIPTIAMLTSTAFFSFASR 203
+ + F++ I M + F +
Sbjct: 175 YHVAFSLAAIGMFIGLLVYYFGGK 198
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 27/189 (14%), Positives = 64/189 (33%), Gaps = 30/189 (15%)
Query: 286 LLRLLPIWTMLLMFAVIFQQ---PVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIIL 342
++ +P++ ++F I +Q + F + P + QS + I+L
Sbjct: 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAA------ERVD-SSWFPVSWFQSLNPLFIML 334
Query: 343 LMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIA---MVIAAAVETKRLQRSK 399
P + K S + +G+ ++ M I A+
Sbjct: 335 --------YTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGAL--------- 377
Query: 400 QAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 459
+ ++ WL+ + L+ + ++ P + +++ VGS L
Sbjct: 378 YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437
Query: 460 SALLISVIE 468
+A L+++
Sbjct: 438 NAQLVTLYN 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 5e-06
Identities = 43/247 (17%), Positives = 71/247 (28%), Gaps = 56/247 (22%)
Query: 138 LDN-QNKKSNNNKSLFFKWWYFGV-CSGSLLGITLMSYIQDTFGWVIGFAIPTIAM---L 192
L N QN K+ W F + C +L T + D I L
Sbjct: 250 LLNVQNAKA---------WNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 193 TSTAFFS-FASRFCKKKSD--HEALKNKPFMSIVQAIKVAASKLKNGKAISPIDKSDAME 249
T S + D E L P + + A +++G A D +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPR-----RLSIIAESIRDGLAT--WDNWKHVN 351
Query: 250 LELQEKPLCCNDQNKELDDELEN--PKNVKH-----AV--QNVKILLRLLPI-WTMLLMF 299
C+ ++ L P + +V + I LL + W ++
Sbjct: 352 ---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 300 AVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIIT 359
V V K + K+ S IP ++ + V + L+ I+
Sbjct: 403 DV--MVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHR-------SIVD 451
Query: 360 CYQFKKG 366
Y K
Sbjct: 452 HYNIPKT 458
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 44/275 (16%), Positives = 79/275 (28%), Gaps = 71/275 (25%)
Query: 248 MELELQEKPLCCND------QN--KELD--DELENPKNV------KHAVQ--NVKILLRL 289
M+ E E D D D + PK++ H + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 290 LPIWTMLLMFAVIFQQPVTFFTKQGMAMKRN---IGSRFKIPPATLQSAITVSII-LLMP 345
L WT+L + Q+ F ++ N + S K S +T I
Sbjct: 67 L-FWTLLSKQEEMVQK---FV---EEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDR 118
Query: 346 LYDTVLIPIIQIITCY------QFKKGISVMQRMRIGMFLTSIAM------VIAAAVETK 393
LY+ Q+ Y + K + +R + + +A V
Sbjct: 119 LYNDN-----QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--- 170
Query: 394 RLQRSKQAEAKPITIFWL------LPEYVLLGISDIFTVV-----AMQEFFYNEVPVRMR 442
K IFWL PE VL + + + + + N + +R+
Sbjct: 171 -CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIH 228
Query: 443 TMGFALYTSVFGVGSFLSALLI-------SVIEFF 470
++ L + + + LL+ F
Sbjct: 229 SIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAF 262
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.92 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.92 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.89 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.86 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.79 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.42 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.23 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.22 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.16 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.88 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.71 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.32 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=258.69 Aligned_cols=406 Identities=14% Similarity=0.201 Sum_probs=279.6
Q ss_pred chhhhhhhhhhhHHHHHHhhhh-----cCCChhhHhhHHHhhHHHHhhhhhhhhHHhhh-ccchhHHHHHHHHHHHHhhH
Q 042477 2 AGKERFAFKGVASNLVTYLTDV-----MKMSNSSAAKTVSSWNGLTSMLPLLLAPLADS-YWDRHSTILAFSFIYVLGLM 75 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Gr~~~i~~~~~~~~ig~~ 75 (478)
.+++++++|++...++.|++++ +|.++.+.+++.+.+.++..++++++|+++|| + |||+++..+.++..++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHH
Confidence 4678899999999999999988 99999999999999999999999999999999 7 999999999999999999
Q ss_pred HhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh
Q 042477 76 ALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW 155 (478)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 155 (478)
++..+ ++.+.++++|+++|+|.|...|...++++|++|+++.+ |+.++++
T Consensus 101 ~~~~~------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~------------------r~~~~~~ 150 (491)
T 4aps_A 101 VLALP------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR------------------RDAGFSI 150 (491)
T ss_dssp HHHSC------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH------------------HHHHHHH
T ss_pred HHHHh------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc------------------ceeeehH
Confidence 98887 77899999999999999999999999999999987633 7788999
Q ss_pred HHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHH--------
Q 042477 156 WYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIK-------- 227 (478)
Q Consensus 156 ~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 227 (478)
++...++|..+||.+++++.+..||++.|.+.++..+++.++.++..++..+++++..+.+....+..+...
T Consensus 151 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 230 (491)
T 4aps_A 151 FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG 230 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence 999999999999999999999899999999988877776666555544332211111111111111111110
Q ss_pred -------HHHHhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 042477 228 -------VAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFA 300 (478)
Q Consensus 228 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 300 (478)
....+.. +.+ +............ ... .....|++...+ ..++++..+..+++.....++
T Consensus 231 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 296 (491)
T 4aps_A 231 FIAIIVVMNLVGWN--------SLP--AYINLLTIVAIAI-PVF-YFAWMISSVKVT--STEHLRVVSYIPLFIAAVLFW 296 (491)
T ss_dssp HHHHHHHHHHHSSC--------CTT--HHHHHHHHHHHHH-HHH-HHHHHC--------------CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCc--------ccc--cchhhhhHHHHHH-HHH-HHHHHhhccccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 0111000 000 0000000000000 000 000001111111 133344444555666666777
Q ss_pred HHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHH
Q 042477 301 VIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLT 380 (478)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~ 380 (478)
..+.+....+..+....... -....+.....+.+..++..++.+++.+ |..+ ++....+++..|.++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~----r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDS----SWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKK----NQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCC----SSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTT----C---CHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHhcc----CccCHHHHhccchHHHHHHHHHHHHHHH----HHhc----cCCCchHHHHHHHHHH
Confidence 77777666554443221111 1145677777888888888888776544 4322 2345567788899999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHH
Q 042477 381 SIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLS 460 (478)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg 460 (478)
++++++........ ....+.+.+++++.+++.++++....+..++++.|.+|++.||+++|+.+...++|+.++
T Consensus 365 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 365 GLSFLLMAIPGALY------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHTTTHHHHHHC------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776543210 001234677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 042477 461 ALLISVIEFF 470 (478)
Q Consensus 461 ~~i~~~~~~~ 470 (478)
+.+.+.+.+.
T Consensus 439 ~~~~~~~~~~ 448 (491)
T 4aps_A 439 AQLVTLYNAK 448 (491)
T ss_dssp HHHGGGGGGS
T ss_pred HHHHHHHhcc
Confidence 9999888654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=264.50 Aligned_cols=407 Identities=23% Similarity=0.388 Sum_probs=274.3
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcC------CChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhH
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMK------MSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLM 75 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~ 75 (478)
++++++++|++...++.|+++++| .++.+.+++.+.+.++..++.+++|+++||++|||+++.++.++..++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 467889999999999999999999 99999999999999999999999999999933999999999999999999
Q ss_pred HhhhcccccccCCCCCcc-chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccch---h
Q 042477 76 ALTSTAFAWAESPANTTS-CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKS---L 151 (478)
Q Consensus 76 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~ 151 (478)
++..+ . +.+.++++|+++|+|.|...|+..++++|++|+++ |+ .
T Consensus 101 ~~~~~------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~ 148 (524)
T 2xut_A 101 FLAIF------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--------------------KSLAQK 148 (524)
T ss_dssp HHHHT------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--------------------TTHHHH
T ss_pred HHHHh------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--------------------hHHHHH
Confidence 98888 5 78899999999999999999999999999999877 64 4
Q ss_pred hhhhHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHH
Q 042477 152 FFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAAS 231 (478)
Q Consensus 152 ~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (478)
.+++++...++|..+||.+++++.+..||++.|.+.+++.+++.++.++..++.++++|++ ++..+..+.+....+
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 224 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP----KDPHGFLPVIRSALL 224 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC----ccchhHHHHHHHHHh
Confidence 5566999999999999999999988899999999988877776666555444333322222 111111111111111
Q ss_pred hcccCCCC--------------CCCCCCcccccc---------ccccccccCCCCCcccccCC-------CCCCchhhHH
Q 042477 232 KLKNGKAI--------------SPIDKSDAMELE---------LQEKPLCCNDQNKELDDELE-------NPKNVKHAVQ 281 (478)
Q Consensus 232 ~~~~~~~~--------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~ 281 (478)
++..+.+. ...++. .+.. +.+.+.. ....| +.....+ .+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~ 293 (524)
T 2xut_A 225 TKVEGKGNIGLVLALIGGVSAAYALVNI--PTLGIVAGLCCAMVLVMGFV--------GAGASLQLERARKSHPDAA-VD 293 (524)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHTGGGT--TTTCSSHHHHHHHHHHHHHH--------HTGGGTHHHHSCCSCCSSS-ST
T ss_pred hhhcccCccchhhhhhhhhhhhhhhccc--chhhhhhhhhhhhhhhhccc--------ccchhhHHhhhhccccHhH-HH
Confidence 11100000 000000 0000 0000000 00001 0000011 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhh
Q 042477 282 NVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCY 361 (478)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~ 361 (478)
++++.+....++.....++..+.+....+..+...++... + .+.+.+...+.+..++..++.+++..|..+|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 368 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV- 368 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC-
Confidence 3444444555555555666677776666655544433210 1 2456677777778888888888876665555432
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchh
Q 042477 362 QFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRM 441 (478)
Q Consensus 362 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 441 (478)
+.++.+++.+|+++.++++++....+... +.....+.+++++.+++.+++++...+..++++.+.+|++.
T Consensus 369 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 369 ----KLTALRKMGAGIAITGLSWIVVGTIQLMM------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp ------CCHHHHHTHHHHHHHHHHTTTTTTTTT------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 45667778888888888877665432100 00113466778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 042477 442 RTMGFALYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 442 rg~~~g~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
||+++|++++..++|+.+++.+.+.+.+.
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999988764
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=219.70 Aligned_cols=360 Identities=10% Similarity=0.001 Sum_probs=227.2
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhh----cccccc
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTS----TAFAWA 85 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~----~~~~~~ 85 (478)
+.....++ ++.+++ .++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.+ +
T Consensus 45 ~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~----- 116 (451)
T 1pw4_A 45 KNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT----- 116 (451)
T ss_dssp TSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH-----
T ss_pred HHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhcc-----
Confidence 33344444 444667 9999999999999999999999999999996 9999999999999999999988 6
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+.+.++++|+++|+|.+...+...++++|.+|+++ |++++++.+...++|..
T Consensus 117 -------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 117 -------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE--------------------RGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp -------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--------------------HHHHHHHHHHHHHHHHT
T ss_pred -------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--------------------hhHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999877 99999999999999999
Q ss_pred HHhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 166 LGITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 166 ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
+||.+++++.+..| |++.|++.+++.++..++.++..++.++.....++ + +.
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------~~ 222 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--E-------------------------EY 222 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--T-------------------------TT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--h-------------------------hh
Confidence 99999999888888 99999998877766655554444322111100000 0 00
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCc
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSR 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 324 (478)
. ++.+ .+.. +... +...+++....+ ....+.++..... .......+......+.. .+....|.
T Consensus 223 ~--~~~~-~~~~----~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~g~- 285 (451)
T 1pw4_A 223 K--NDYP-DDYN----EKAE--QELTAKQIFMQY-VLPNKLLWYIAIA---NVFVYLLRYGILDWSPT---YLKEVKHF- 285 (451)
T ss_dssp C--CC--------------------CCTHHHHHH-TSSCHHHHHHHHH---HHHHHHHHHHHHHHHHH---HBTTBSCC-
T ss_pred c--cccc-ccch----hhhh--cccccccchHHH-HHcCHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHhcCC-
Confidence 0 0000 0000 0000 000010000000 1111222221111 11111111111111111 12222121
Q ss_pred cccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCC
Q 042477 325 FKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTS-IAMVIAAAVETKRLQRSKQAEA 403 (478)
Q Consensus 325 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 403 (478)
-....+.+.....+..++..++...+ .+|.. .++++.+.++.++.. +++++....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------- 341 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVF-------RGNRGATGVFFMTLVTIATIVYWMN------------- 341 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTS-------TTCHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------cCCchhHHHHHHHHHHHHHHHHHHh-------------
Confidence 01112333444444444444444433 23320 023344445544444 444433221
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhH-HHHHHHHHHHHhhhccc
Q 042477 404 KPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGV-GSFLSALLISVIEFFTS 472 (478)
Q Consensus 404 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~lg~~i~~~~~~~~~ 472 (478)
...+.+.+....++.+++.....+....+..+.+|++.||+++|+.+....+ |+.+++.+.+.+.+..+
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0125566667777888888888888899999999999999999999999999 99999999998876544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-23 Score=208.89 Aligned_cols=335 Identities=9% Similarity=0.030 Sum_probs=219.5
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHh---hhcccccccCCC
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMAL---TSTAFAWAESPA 89 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~---~~~~~~~~~~~~ 89 (478)
...+..++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.++. ..+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~--------- 114 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEI--------- 114 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 33445557789999999999999999999999999999999996 99999999999999999998 555
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
++.+.++++|++.|+|.|...+...++++|.+|+++ |++.+++.+...++|..++|.
T Consensus 115 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 115 ---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS--------------------GHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT--------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh--------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999887 999999999999999999999
Q ss_pred hhhhhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHH
Q 042477 170 LMSYIQ-DTFG-------------------------WVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIV 223 (478)
Q Consensus 170 ~~~~i~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (478)
+++++. +..+ |++.|++.++..++..++.++.+. ++.+++.+++++.
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~----- 244 (438)
T 3o7q_A 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHSDAKQ----- 244 (438)
T ss_dssp HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCCCSST-----
T ss_pred HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccccccccc-----
Confidence 999887 5544 999998776655555444333211 1111110000000
Q ss_pred HHHHHHHHhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 042477 224 QAIKVAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVI 302 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ 302 (478)
. + ....+ .+ +.+.+.++..... +.........
T Consensus 245 ---------------------~--~------------------~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T 3o7q_A 245 ---------------------G--S------------------FSASL-----SR-LARIRHWRWAVLAQFCYVGAQTAC 277 (438)
T ss_dssp ---------------------T--S------------------HHHHH-----HH-HTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------c--c------------------hhhhH-----HH-HHhChHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000 00 0011111111111 1111111111
Q ss_pred hccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHH
Q 042477 303 FQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSI 382 (478)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~ 382 (478)
... ...+ .+.+..|. -....+.+.....+..++..++...+ .+| .++++.+..+.++.++
T Consensus 278 ~~~----~~~~--~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l----~~r---------~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 278 WSY----LIRY--AVEEIPGM-TAGFAANYLTGTMVCFFIGRFTGTWL----ISR---------FAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHH----HHHH--HHHHSTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------SCHHHHHHHHHHHHHH
T ss_pred HHH----HHHH--hhhccCCc-chhHHHHHHHHHHHHHHHHHHHHHHH----HHH---------hcchHHHHHHHHHHHH
Confidence 111 1111 01111111 01122333333344444444444333 233 3344556677777766
Q ss_pred HHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHH
Q 042477 383 AMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSAL 462 (478)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~ 462 (478)
++++.... .+. +.+..+++.+++.....|..+++..+..|++ ++.++++.. ...+|+.+++.
T Consensus 338 ~~~~~~~~---------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 338 LCLISAFA---------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp HHHHHHHC---------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHHHc---------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHH
Confidence 66554432 122 2344457788888888899999999999988 999999888 67899999999
Q ss_pred HHHHhhhccc
Q 042477 463 LISVIEFFTS 472 (478)
Q Consensus 463 i~~~~~~~~~ 472 (478)
+.+.+.+..+
T Consensus 400 ~~g~l~~~~g 409 (438)
T 3o7q_A 400 VMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999888766
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=208.35 Aligned_cols=338 Identities=11% Similarity=0.037 Sum_probs=219.9
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
..+......+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++...+
T Consensus 12 ~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---- 85 (375)
T 2gfp_A 12 GQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTT---- 85 (375)
T ss_dssp HHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHh----
Confidence 34444444555555 4578999999999999999999999999999999996 99999999999999999999888
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|.
T Consensus 86 --------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~ 137 (375)
T 2gfp_A 86 --------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ--------------------LRHANSLLNMGILVSP 137 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--------------------CCSHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999877 9999999999999999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
.++|.+++++.+..+|+..|.+.++..++..+...+.. +++++++++ +
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~--------------------------- 185 (375)
T 2gfp_A 138 LLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWM---PETRPVDAP--R--------------------------- 185 (375)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSS---CCCSTTTCC--C---------------------------
T ss_pred HhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHC---cccCCCCcc--c---------------------------
Confidence 99999999999888999999887776555443222222 111111100 0
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhccCcchhhhhhccccccCCC
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIW-TMLLMFAVIFQQPVTFFTKQGMAMKRNIGS 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 323 (478)
+ + ....+ ++ ..+.++++...... .............+..+ .+..+.+
T Consensus 186 ~--~------------------~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~----- 233 (375)
T 2gfp_A 186 T--R------------------LLTSY-----KT-LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLM-GAVLGLS----- 233 (375)
T ss_dssp C--C------------------TTTCS-----TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSS-HHHHHHH-----
T ss_pred c--c------------------HHHHH-----HH-HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCC-----
Confidence 0 0 00001 11 22223333222111 11111111111111111 1101111
Q ss_pred ccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCC
Q 042477 324 RFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFL-TSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
....+.+.....+..++..++.++ +.+|. ++ ++..+..+ ...+.........
T Consensus 234 --~~~~g~~~~~~~~~~~~~~~~~~~----l~~r~---------~~--~~~~~~~~~~~~~~~~~~~~~~---------- 286 (375)
T 2gfp_A 234 --SMTVSILFILPIPAAFFGAWFAGR----PNKRF---------ST--LMWQSVICCLLAGLLMWIPDWF---------- 286 (375)
T ss_dssp --HHHHHHHHHTHHHHHHHHHHHHHT----TTTHH---------HH--HHHHHHHHHHHTSSSSSHHHHH----------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---------HH--HHHHHHHHHHHHHHHHHHHhhh----------
Confidence 111233333333333343333322 22221 11 33444433 2222221111100
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 403 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
...+.+..+...++.+++.+...+....+..|..| +.||+++|+.+....+|..+++.+.+.+.+
T Consensus 287 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 287 -GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred -ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01245556677888899999999999999999999 789999999999999999999988877654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=198.50 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=116.2
Q ss_pred hhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCC------CccchHHHHHH
Q 042477 28 NSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPAN------TTSCSSFLFLP 101 (478)
Q Consensus 28 ~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~------~~~~~~~~~~~ 101 (478)
+.+.+++.+.+.++..+++++.|+++||+ |||+++.++.+++.++.++++++.......... .-.+...++++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 34568899999999999999999999996 999999999999999999887532100000000 01578899999
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc-----
Q 042477 102 LSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD----- 176 (478)
Q Consensus 102 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~----- 176 (478)
|+++|+|.|+..+..+++++|..|+++ |++..++.+....+|.++++.++..+..
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~--------------------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHI--------------------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGG--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHh--------------------hhhhHHhhhhhhhhhhhhhhhcchhhccccccc
Confidence 999999999999999999999999887 9999999999999999998887765532
Q ss_pred ---ccchhHHHHHHHHHHHHHHH
Q 042477 177 ---TFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 177 ---~~g~~~~f~~~~~~~~~~~~ 196 (478)
..+|+..+.+..+..++..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 193 WLNTDGWRYMFASECIPALLFLM 215 (491)
T ss_dssp TTTTTHHHHHHHTTHHHHHHHHH
T ss_pred cccchhhHHHhhhhhhhhhhhhh
Confidence 23577766655554444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-20 Score=187.41 Aligned_cols=156 Identities=11% Similarity=0.054 Sum_probs=107.1
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
+++..+.++++.|+++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++..+..++..........
T Consensus 21 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~--- 96 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFG--- 96 (417)
T ss_dssp HHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHH---
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34555567899999999999999999999999999999999999999996 99999999888776543222111000
Q ss_pred CCCCCccch-HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 87 SPANTTSCS-SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
... ..++.++++.+++.|...+...+...+..++..+ +++..++......++|..
T Consensus 97 ------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------------~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 97 ------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR------------------RSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp ------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH------------------HHTCCHHHHSSSTTTHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh------------------hcccchHHHHHHHHHHHH
Confidence 000 1123445554554444333334444443322110 156667777777899999
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHH
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAM 191 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~ 191 (478)
++|.+++++.+ .+|+..|++.++..
T Consensus 153 ~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 153 LGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp HHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 99999998876 68999998766543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.4e-13 Score=134.97 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=143.5
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhcc--chhHHHHHHHHHHH-HhhHHhhh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYW--DRHSTILAFSFIYV-LGLMALTS 79 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~--Gr~~~i~~~~~~~~-ig~~l~~~ 79 (478)
++..+.++++..+++.|+++.+|.++.+.+++.+...++..++.++.|+++|| + |||+.+..+..+.. ++.+++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 34456777888899999998899999999999999999999999999999999 7 99999888877776 66666555
Q ss_pred cccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHH
Q 042477 80 TAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFG 159 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (478)
... .+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++++..
T Consensus 341 ~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~ 390 (451)
T 1pw4_A 341 NPA----------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA--------------------AGTAAGFTGLF 390 (451)
T ss_dssp CCT----------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH--------------------HHHHHHHHHHH
T ss_pred hcc----------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh--------------------hhhHHHHHHHH
Confidence 411 356677788888899999888888999999999877 99999999999
Q ss_pred Hhh-hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 160 VCS-GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 160 ~~~-G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.++ |..++|.+.+++.+..||+..|.+.+++.+++.++.++..
T Consensus 391 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999988887777766655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-11 Score=120.58 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=128.2
Q ss_pred hhhhhhhhhhHHHHHH-hhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTY-LTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
+....++++..+++.| +++.+|.++.+.+...+...++..++.+++|+++||+ |||+++..+.++..++.++....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 345 (438)
T 3o7q_A 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFA-- 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHc--
Confidence 3445667777899999 8888899999999999999999999999999999996 99999999999998888877766
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+... .+..++.|++.+...|...++..|.+|++ ++...++.. ...+
T Consensus 346 ----------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-~~~~ 392 (438)
T 3o7q_A 346 ----------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD---------------------TKYGSSFIV-MTII 392 (438)
T ss_dssp ----------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG---------------------HHHHHHHHH-HTTH
T ss_pred ----------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------------ccchhhHHH-HHHH
Confidence 33433 34447788999999999999999988843 556666655 5679
Q ss_pred hhhHHhhhhhhhccccc-hhHHHHHHHHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDTFG-WVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~ 196 (478)
|..++|.+.|++.+..| ++..|.+.+++.++..+
T Consensus 393 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 393 GGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99999999999999888 99999877665544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=123.25 Aligned_cols=161 Identities=7% Similarity=0.077 Sum_probs=124.0
Q ss_pred hhhhhHHHHHHhhhhcCCC---hhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 9 FKGVASNLVTYLTDVMKMS---NSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
|+.....++.|+++.++.. ....+...+...+...++.+++|+++||+ |||+++..+.++.+++.+++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~----- 309 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA----- 309 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3344456778887666532 34456667777777888899999999996 99999999988888877766655
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh-HHHHHhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW-WYFGVCSGS 164 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~ 164 (478)
.+.+.+++..++.+++.+...+....+..|.+|++. |++.+++ ++...++|+
T Consensus 310 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~lg~ 362 (417)
T 2cfq_A 310 -------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF--------------------SATIYLVCFCFFKQLAM 362 (417)
T ss_dssp -------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH--------------------HHHHHHHHHTTTHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHhHHH
Confidence 455666666677777777767777889999999876 8999888 577888999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.++|.++|++.+..|++..|.+.+++.+++.++.++..
T Consensus 363 ~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999998888999999888877777666554433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=120.71 Aligned_cols=174 Identities=13% Similarity=0.064 Sum_probs=132.6
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHH-----HHHHHHHHhhHHhhhcc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL-----AFSFIYVLGLMALTSTA 81 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~-----~~~~~~~ig~~l~~~~~ 81 (478)
..+......++.|.++.++.+..+.++..+...+...++.++.|++.||+ |||+... .+.++..++.+++....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788899888888878888888888999999999999999996 9986654 77777777777766542
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
.. ..++.+.+.+.+.++.++.|+|.+...|...+++.|.+|++. |++++++++...+
T Consensus 376 ~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~ 432 (491)
T 4aps_A 376 AL---YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF--------------------NSQMMSMWFLSSS 432 (491)
T ss_dssp HH---CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC--------------------SSSSTHHHHHHHH
T ss_pred Hh---cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHH
Confidence 10 000011456777788888999999999999999999999888 9999999999999
Q ss_pred hhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 162 SGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
+|..+++.+.+++.+ .++...|.+.+.+.+++.++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 4777788777776666666655555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=103.22 Aligned_cols=160 Identities=8% Similarity=0.037 Sum_probs=114.4
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+.+....... ...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 369 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ--------APG 369 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT--------CCH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc--------cch
Confidence 34455567888888887777777888899999999999996 999999999988888877766542211 112
Q ss_pred HHHHHHHH--HHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 96 SFLFLPLS--LISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 96 ~~~~~~~~--l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
...++... ..+++. +..|....+.+|.+|.+. |++++++.+...++|+++++.+.+.
T Consensus 370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~--------------------R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI--------------------RGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT--------------------HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 223332 344677789999999988 9999999999999999999888776
Q ss_pred hcc------ccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 174 IQD------TFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 174 i~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
+.+ ..++...|++.+.+.+++.++.++..|+.
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 643 24556677777777777766666666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-09 Score=106.20 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=118.7
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHH-HHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFI-YVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~-~~ig~~l~~~~~~ 82 (478)
+...++++...+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ...+..+......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 33456666777788888888999999999999999999999999999999996 872 3333333 3333332222210
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
. ..+.+.+++..++.|++.+...|...++..|.+| ++ |+++++..+...++
T Consensus 287 ~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~--------------------~g~~~g~~~~~~~~ 337 (375)
T 2gfp_A 287 G--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL--------------------AGTAGALVGGLQNI 337 (375)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH--------------------HHHHHHHHHHHHHH
T ss_pred c--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc--------------------cchHHHHHHHHHHH
Confidence 0 0355667778888999999999999999999988 55 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTI 189 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~ 189 (478)
|..++|.+.+.+.+..+|...+.+...
T Consensus 338 g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 338 GSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999999999999887788887776443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=90.83 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=98.9
Q ss_pred hHhhHHHhhHHHHhhhhhhhhHHh----hhccch----hHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHH
Q 042477 30 SAAKTVSSWNGLTSMLPLLLAPLA----DSYWDR----HSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLP 101 (478)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~G~la----D~~~Gr----~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (478)
..+.+.....+...+..++.+++. ||. || ++.+.++.++..++.+++...... .+.+...+.+.++++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 411 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLM---MDGGSALSIFWQILP 411 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTT---TTTTCCCCSHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCcCHHHHHHH
Confidence 345555555556666666666654 443 43 356777888888887776654210 000001356677788
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcccc--c
Q 042477 102 LSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTF--G 179 (478)
Q Consensus 102 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~--g 179 (478)
.++.|+|.+...|...++..|.+|++. |++.+++++...++|..+||.+.+++.+.. +
T Consensus 412 ~~l~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~ 471 (524)
T 2xut_A 412 YALLTFGEVLVSATGLEFAYSQAPKAM--------------------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTE 471 (524)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCCTTC--------------------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHH--------------------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 889999999999999999999999887 999999999999999999999999887632 2
Q ss_pred h---------hHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 180 W---------VIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 180 ~---------~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
| +..|.+.+.+.+++.++.++..++.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 472 QIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3336666665556555555544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.9 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.27 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.17 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=5e-23 Score=207.93 Aligned_cols=160 Identities=12% Similarity=0.068 Sum_probs=136.7
Q ss_pred HHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCcc
Q 042477 14 SNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTS 93 (478)
Q Consensus 14 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 93 (478)
+.+.++++ ++|+|+++.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.++.+.....+ .
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~ 114 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------S 114 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------S
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------h
Confidence 44556776 5899999999999999999999999999999996 999999999999999998887663211 4
Q ss_pred chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 94 CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 94 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
+...+++.|++.|++.|...+...++++|.+|+++ |++++++.+...++|..+++.+++.
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE--------------------RGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--------------------HHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc--------------------ccccccccccccchhhhhhhhhhhh
Confidence 67889999999999999999999999999999887 9999999999999999999998887
Q ss_pred hccc-cchhHHHHHHHHHHHHHHHHHHhhcc
Q 042477 174 IQDT-FGWVIGFAIPTIAMLTSTAFFSFASR 203 (478)
Q Consensus 174 i~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~ 203 (478)
+... .+|++.|++.+...++..++.+...+
T Consensus 175 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 6554 47999998888776666555555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2e-20 Score=184.64 Aligned_cols=360 Identities=10% Similarity=0.011 Sum_probs=202.0
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
++..+++....+.++.|+++++|.|+.+.|++.+.+.++..+++++.|+++||+ ||||+++++..+..++..+......
T Consensus 17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHhhh
Confidence 344566666778899999999999999999999999999999999999999996 9999999999999998888877621
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+ ......++.+.+.+.+.+...+.......+..+++. ..+....+........
T Consensus 96 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 149 (417)
T d1pv7a_ 96 GP--------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS------------------RRSNFEFGRARMFGCV 149 (417)
T ss_dssp HH--------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH------------------HHHSCCHHHHHHHHHH
T ss_pred hh--------hHHHHHHHHHHHhhhcccccccchhhcccccccchh------------------hhhHHHHHHHhhhhcc
Confidence 10 112223344444444444433333333333222211 0145566667777888
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCC
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPI 242 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
+..+++.+++.+.+ .+|+..+........+..++..+..++.+..+++. ++ .+ .
T Consensus 150 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~-------------~------- 203 (417)
T d1pv7a_ 150 GWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA----NA-VG-------------A------- 203 (417)
T ss_dssp HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS----HH-HH-------------S-------
T ss_pred cccccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhh----hh-hh-------------h-------
Confidence 88999999888876 45555555555444444444444333221111111 00 00 0
Q ss_pred CCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCC
Q 042477 243 DKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIG 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 322 (478)
+. + ........+...+++..................... ..... .......+
T Consensus 204 -~~--~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 255 (417)
T d1pv7a_ 204 -NH--S---------------------AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQ-FANFF---TSFFATGE 255 (417)
T ss_dssp -CC--C---------------------CCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH-HHHHH---TTSSSCHH
T ss_pred -hc--c---------------------cccccccccccccccccchhhhhHHHHHHHHhhhcc-ccccc---cccccccc
Confidence 00 0 000000000000000000000111111111111100 00000 00010000
Q ss_pred CccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 042477 323 SRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
. .............+...+...+. +++.+ +.++++.+.++.++.+++.+....
T Consensus 256 ~-~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~-----r~~~~~~~~~~~~~~~~~~~~~~~------------- 308 (417)
T d1pv7a_ 256 Q-GTRVFGYVTTMGELLNASIMFFA--------PLIIN-----RIGGKNALLLAGTIMSVRIIGSSF------------- 308 (417)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHTTH--------HHHHH-----HHCHHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred c-chhhhcccccccccccccchhhh--------hhhhc-----ccccccchhhhHHHHHHhhhcccc-------------
Confidence 0 00001111122222222222222 22222 334455677777777776666553
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHH-HHHHhHHHHHHHHHHHHhhhccc
Q 042477 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALY-TSVFGVGSFLSALLISVIEFFTS 472 (478)
Q Consensus 403 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~lg~~i~~~~~~~~~ 472 (478)
..+.+.+++..++.+++.+...+...+++.|.+|++.||+++|+. ++...+|..+++.+.|.+.+..|
T Consensus 309 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g 377 (417)
T d1pv7a_ 309 --ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred --ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 346677788888999999999999999999999999999999985 56778999999999998876554
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.2e-11 Score=123.28 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=129.4
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFA 83 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~ 83 (478)
+.....++...+++.|+++.++.+..+.+.......+...++.+++|+++||+ +|++..........+..+........
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (447)
T d1pw4a_ 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVYWMN 338 (447)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHHHhc
Confidence 34455677788899999999999999999999999999999999999999996 87765444333333222222222110
Q ss_pred cccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh-
Q 042477 84 WAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS- 162 (478)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~- 162 (478)
+ ..+.+..++..++.|++.++..+....+..|.+|++. |+++.++.+...++
T Consensus 339 ~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~~ 391 (447)
T d1pw4a_ 339 P-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA--------------------AGTAAGFTGLFGYLG 391 (447)
T ss_dssp C-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH--------------------HHHHHHHHHHHHHHH
T ss_pred c-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--------------------HHHHHHHHHHHHHHH
Confidence 1 1456777777888899988888999999999999877 99999998888887
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFA 201 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~ 201 (478)
|..++|.+.+++.+++||+..|.+...+.+++.++....
T Consensus 392 g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 392 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999999988777666655544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.1e-11 Score=118.71 Aligned_cols=145 Identities=8% Similarity=0.038 Sum_probs=124.3
Q ss_pred CCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHHHHH
Q 042477 25 KMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLPLSL 104 (478)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (478)
+.+....+.......+...++..+.+++.||+ |||+.+..+.++..++.+++... .+.+.+++..++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l 321 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA------------TSALEVVILKTL 321 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC------------CCHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc------------cccchhhHHHHH
Confidence 33455567777777888899999999999996 99999999999999999888887 678888888899
Q ss_pred HHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhH-HHHHhhhhhHHhhhhhhhccccchhHH
Q 042477 105 ISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWW-YFGVCSGSLLGITLMSYIQDTFGWVIG 183 (478)
Q Consensus 105 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~~~~~i~~~~g~~~~ 183 (478)
.|++.+...+...+++.|.+|++. |++.++.. .....+|..++|.++|++.+++||+..
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~ 381 (417)
T d1pv7a_ 322 HMFEVPFLLVGCFKYITSQFEVRF--------------------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGG--------------------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHhH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 999999999999999999999887 99999985 456679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 042477 184 FAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 184 f~~~~~~~~~~~~~~~~~~ 202 (478)
|++.+++.++..++..+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 382 YLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9988877776666555544
|