Citrus Sinensis ID: 042496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MERPEERLKLEERLIPSSSLADEIGDGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKLSGR
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccHHHHcccccccccccccccHHHHHHHHHHHccEEEEEEEEEccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccccccHHHHccccccccccccccccHHEHHHHHHHccEEEEEEEccccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MERPEERLKLEerlipsssladeigdgsgmqesdssatpAVVLGALVAVRGVAFVTFLvpatkgrtlEEIQASITKLSGR
Flexible Loop (DISEMBL)
merpeerlkleerlipsssladeiGDGSGMQESDSSATPAVVLGALVAVRGVAFVTflvpatkgrtleeiqasitklsgr
Low Complexity Region (SEG)
MerpeerlkleerlIPSSSLADEIGDGSGMQESDSSATPavvlgalvavrgvafvTFLVPATKGRTLEEIQASITKLSGR
Disordered region (IsUnstruct)
***************************************AVVLGALVAVRGVAFVTFLVPATKGRTL*************
Disordered Region (DISOPRED)
******R****ERLIP***********************AVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKL***
Disordered Region (DISEMBL)
********KLEERLIPSSSLADEI*************TPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQA********
Disordered Region (DISPRO)
******R*K*E*RLIPS********************TPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERPEERLKLEERLIPSSSLADEIGDGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKLSGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.001
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.002

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 16/28 (57%), Positives = 18/28 (64%)

Query: 45  ALVAVRGVAFVTFLVPATKGRTLEEIQA 72
           A + V  + FV F VP TKGRTLEEI  
Sbjct: 420 AGLLVLFILFVFFFVPETKGRTLEEIDE 447

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 30  MQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEI 70
           M ES       +  G L  + G+ FV F +P TKGRTLEEI
Sbjct: 442 MLESIGVGGVFIFFGGLNVL-GLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG0569	485	consensus Permease of the major facilitator superf	98.16
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.78
KOG0254	513	consensus Predicted transporter (major facilitator	97.59
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.33
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.02
KOG2532	466	consensus Permease of the major facilitator superf	94.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	94.46
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	94.24
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	92.29
PRK10489	417	enterobactin exporter EntS; Provisional	90.86
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	88.76
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	88.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	88.17
TIGR00898	505	2A0119 cation transport protein.	87.67
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	86.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	84.82
PRK10473	392	multidrug efflux system protein MdtL; Provisional	82.54
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	81.63
PRK03545	390	putative arabinose transporter; Provisional	81.16
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	81.03

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.16  E-value=5.2e-06  Score=63.95  Aligned_cols=60  Identities=20%  Similarity=0.083  Sum_probs=47.3

Q ss_pred             hhhhhhhhc-CChhhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhc
Q 042496           17 SSSLADEIG-DGSGMQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKL   77 (80)
Q Consensus        17 ~~~~~~~~~-~~~~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~~~~   77 (80)
                      .+|+.|.+. .....+.+.+|. ++|++|++.++++.+++|+++||||||+..||.+.++++
T Consensus       412 ~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  412 VNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            456666655 222223456774 899999999999999999999999999999999988764

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.78  E-value=1.1e-05  Score=58.68  Aligned_cols=40  Identities=38%  Similarity=0.495  Sum_probs=35.5

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 042496           35 SSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASI   74 (80)
Q Consensus        35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~   74 (80)
                      .+...+|++++++++++.+++++++|||||++++||+++|
T Consensus       412 ~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  412 LGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             ccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            3435789999999999999999999999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.59  E-value=0.00012  Score=55.20  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=36.4

Q ss_pred             chhHHHHHHHHHHHHHH-HHHhhccCCCCCCHHHHHHHHhhc
Q 042496           37 ATPAVVLGALVAVRGVA-FVTFLVPATKGRTLEEIQASITKL   77 (80)
Q Consensus        37 ~~~vF~ifa~i~~v~~v-~~~~~lPETkg~sLeeI~~~~~~~   77 (80)
                      ..++|++|++++.+... ++++++|||||++++|+++.+.++
T Consensus       460 ~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  460 IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            35789999999999888 899999999999999999988654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.33  E-value=0.00079  Score=49.28  Aligned_cols=44  Identities=27%  Similarity=0.250  Sum_probs=38.3

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhc
Q 042496           34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKL   77 (80)
Q Consensus        34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~~~~   77 (80)
                      .+++..+|.+++++++++.++.+++.||||+++++|+++.+++.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  475 (479)
T PRK10077        432 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE  475 (479)
T ss_pred             hccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence            56777889999999999988888899999999999999988553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.02  E-value=0.00062  Score=50.99  Aligned_cols=37  Identities=35%  Similarity=0.534  Sum_probs=29.7

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 042496           35 SSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQA   72 (80)
Q Consensus        35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~   72 (80)
                      .+...+|++++++++++.++ ++++|||+++++|||++
T Consensus       465 ~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       465 IWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG  501 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence            34456889999988887665 46789999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.54  E-value=0.18  Score=38.67  Aligned_cols=73  Identities=15%  Similarity=0.072  Sum_probs=53.7

Q ss_pred             hhHhhhhhhhhcchhhhhhhhcCC-hhhhhhh-cCchhHHHHHHHHHHHHHHHHHhhccC----CCCCCHHHHHHHHhh
Q 042496            4 PEERLKLEERLIPSSSLADEIGDG-SGMQESD-SSATPAVVLGALVAVRGVAFVTFLVPA----TKGRTLEEIQASITK   76 (80)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~vF~ifa~i~~v~~v~~~~~lPE----Tkg~sLeeI~~~~~~   76 (80)
                      |.||-++-+-+...+-+.+-++++ ++.+-++ +||+.+|.++++++++..+..+++.-|    .+..+-+|.+.+-.+
T Consensus       159 ~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~  237 (466)
T KOG2532|consen  159 PNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKG  237 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhc
Confidence            789999999898888888888874 6666555 899999999999888776655444432    245566776665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=94.46  E-value=0.051  Score=38.64  Aligned_cols=36  Identities=39%  Similarity=0.562  Sum_probs=30.9

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 042496           34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEE   69 (80)
Q Consensus        34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLee   69 (80)
                      ..|+..+|++++++++++.+..+++.||++++++++
T Consensus       445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             hcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            567778899999999999888888999999988765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=94.24  E-value=0.032  Score=43.75  Aligned_cols=40  Identities=30%  Similarity=0.471  Sum_probs=33.1

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 042496           34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASI   74 (80)
Q Consensus        34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~   74 (80)
                      ..|...+|++++++++++.++.+ ++||||+++++|+++..
T Consensus       473 ~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  473 NIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEE  512 (538)
T ss_pred             cccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChh
Confidence            45677899999999998877655 57799999999997654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=92.29  E-value=0.37  Score=36.62  Aligned_cols=57  Identities=18%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             hhHhhhhhhhhcchhhhhhhhcCChhhhhh-hcCchhHHHHHHHHHHHHHHHHHhhcc
Q 042496            4 PEERLKLEERLIPSSSLADEIGDGSGMQES-DSSATPAVVLGALVAVRGVAFVTFLVP   60 (80)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~vF~ifa~i~~v~~v~~~~~lP   60 (80)
                      |+.|-+--+-++=+.++++-.|-|.+-... .+||..+|++.++++++..+..+..+|
T Consensus       132 p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         132 PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            455555556666677888888877776654 479999999999999999999999999

>PRK10489 enterobactin exporter EntS; Provisional

Probab=90.86  E-value=0.17  Score=36.71  Aligned_cols=41  Identities=0%  Similarity=-0.087  Sum_probs=33.4

Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 042496           33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQAS   73 (80)
Q Consensus        33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~   73 (80)
                      +.+|...++++++++..+..++.+..+|++|+++++|++.+
T Consensus       373 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        373 AMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            34566677888888888878888888999999999998765

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=88.76  E-value=0.35  Score=37.66  Aligned_cols=56  Identities=23%  Similarity=0.301  Sum_probs=42.8

Q ss_pred             hhhcchhhhhhhhcCChhhhhh------------hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCH
Q 042496           12 ERLIPSSSLADEIGDGSGMQES------------DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTL   67 (80)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sL   67 (80)
                      -++.|.+-.+..+|..++|...            ..+...+-++|+++++++.+.++++--|||||++
T Consensus       460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             CcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            3678999999999988887621            1122345778889999998888888789999975

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=88.74  E-value=1.4  Score=32.18  Aligned_cols=59  Identities=19%  Similarity=0.032  Sum_probs=36.1

Q ss_pred             hHhhhhhhhhcchhhhhhhhcCCh-hhhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496            5 EERLKLEERLIPSSSLADEIGDGS-GMQESDSSATPAVVLGALVAVRGVAFVTFLVPATK   63 (80)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk   63 (80)
                      ++|-+.-.-..-+..+...++... +.+...+||+.+|++.++++++..+..++++||..
T Consensus       110 ~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       110 ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            444443333333333444444222 22234679999999989998888888888899864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=88.17  E-value=1.4  Score=32.41  Aligned_cols=32  Identities=9%  Similarity=-0.023  Sum_probs=25.2

Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496           33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG   64 (80)
Q Consensus        33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg   64 (80)
                      ..+||...|++.+++.+++.+..++.+||++.
T Consensus       165 ~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        165 HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            45688899999988888877777777898753

>TIGR00898 2A0119 cation transport protein

Probab=87.67  E-value=0.51  Score=34.97  Aligned_cols=34  Identities=29%  Similarity=0.267  Sum_probs=24.1

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 042496           35 SSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEE   69 (80)
Q Consensus        35 ~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLee   69 (80)
                      .+...++++++++++++.+. .+++|||++++++|
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~~  504 (505)
T TIGR00898       471 KWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLPE  504 (505)
T ss_pred             HHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCCC
Confidence            34456777887777776555 45789999988754

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=86.70  E-value=1.9  Score=30.97  Aligned_cols=32  Identities=22%  Similarity=-0.003  Sum_probs=25.2

Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496           33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG   64 (80)
Q Consensus        33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg   64 (80)
                      ...||..+|++.+++++++.+..++..||++.
T Consensus       162 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        162 HVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            35688889999888888877777777888754

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=84.82  E-value=3.5  Score=24.02  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=22.2

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHhhccCC
Q 042496           34 DSSATPAVVLGALVAVRGVAFVTFLVPAT   62 (80)
Q Consensus        34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPET   62 (80)
                      ..++..+|.+.+++++++.+..++..|||
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880       113 FLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            45666788888888888878777777764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=82.54  E-value=4  Score=29.12  Aligned_cols=32  Identities=9%  Similarity=0.019  Sum_probs=24.9

Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496           33 SDSSATPAVVLGALVAVRGVAFVTFLVPATKG   64 (80)
Q Consensus        33 ~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg   64 (80)
                      +..||..+|.+.++++++..++.+.+.||++.
T Consensus       152 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        152 LKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            35688888999988888888877777887653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=81.63  E-value=2.8  Score=34.18  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=20.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhccCCCCCCH
Q 042496           36 SATPAVVLGALVAVRGVAFVTFLVPATKGRTL   67 (80)
Q Consensus        36 g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sL   67 (80)
                      +...+|++++++.+++.++.+ ++|||+++.|
T Consensus       711 ~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l  741 (742)
T TIGR01299       711 TKAAPILFASAALACGGLLAL-KLPDTRGQVL  741 (742)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence            334567777777666555544 5699999864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=81.16  E-value=5  Score=28.74  Aligned_cols=46  Identities=15%  Similarity=0.034  Sum_probs=29.6

Q ss_pred             hhhhhhhcCChh-hhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCC
Q 042496           18 SSLADEIGDGSG-MQESDSSATPAVVLGALVAVRGVAFVTFLVPATK   63 (80)
Q Consensus        18 ~~~~~~~~~~~~-~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETk   63 (80)
                      .++...++...+ ++.+.+||+.+|++.++++++..+..+...|+.+
T Consensus       142 ~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        142 TALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            334444443333 2334579889999999888887777777777643

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=81.03  E-value=5.6  Score=27.80  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=25.7

Q ss_pred             hhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 042496           32 ESDSSATPAVVLGALVAVRGVAFVTFLVPATKGR   65 (80)
Q Consensus        32 ~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~   65 (80)
                      .+.+||..+|++.++++++..+..++..||++..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       153 LVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            3457888889888888888777777778887543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.7
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	83.95

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.70  E-value=7.9e-09  Score=73.69  Aligned_cols=44  Identities=27%  Similarity=0.252  Sum_probs=38.1

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhc
Q 042496           34 DSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEEIQASITKL   77 (80)
Q Consensus        34 ~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLeeI~~~~~~~   77 (80)
                      .++...+|++++++++++.+++++++|||||+++||||+.|+++
T Consensus       438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~  481 (491)
T 4gc0_A          438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE  481 (491)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence            34556789999999999999999999999999999999998654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=83.95  E-value=1.3  Score=30.42  Aligned_cols=32  Identities=16%  Similarity=0.051  Sum_probs=25.3

Q ss_pred             hhcC-chhHHHHHHHHHHHHHHHHHhhccCCCC
Q 042496           33 SDSS-ATPAVVLGALVAVRGVAFVTFLVPATKG   64 (80)
Q Consensus        33 ~~~g-~~~vF~ifa~i~~v~~v~~~~~lPETkg   64 (80)
                      ..+| |..+|++.++++++..+..++.+||+..
T Consensus       180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            4577 8899999998888887877788887643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	86.11

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=86.11  E-value=0.81  Score=28.39  Aligned_cols=40  Identities=15%  Similarity=0.014  Sum_probs=32.3

Q ss_pred             hhhhhcCchhHHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 042496           30 MQESDSSATPAVVLGALVAVRGVAFVTFLVPATKGRTLEE   69 (80)
Q Consensus        30 ~~~~~~g~~~vF~ifa~i~~v~~v~~~~~lPETkg~sLee   69 (80)
                      .+.+.+|+..+|++++++++++.++..+.+++++..++.+
T Consensus       371 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            4445678888999999999988888888888887777755