Citrus Sinensis ID: 042539

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MEATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPSHRSFAEY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEccccccccccccccHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHEEEEEccccccEEEEEEEccccHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEEEcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHEEEcccccEEEccccccEEccccEccEEEccccccccccccccccccccccccccccccccHcccccccccccccccHHHHHcccccccEccccccHHHccHHHHccccEccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHccccccHHHHHcccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meatpppqpqttpsldldnLKALKILGKGAMGTVFLvhdraadptarcpfaLKVVDKSTLHAKHEAERRARWEIRVLSrlshpflpkllgsletdeflawavpycpggdlnvlrykqndrvfspsVIRFYLSEIICAIEHLHNMgiayrdlkpenilirqsghvtltdfdlsrnlvkKTAFEKqslnnnkfpvlpvtenpkrhRRILTRWLHalpenktglkktksarvspvsrrqqsfdngersnsfvgteeyvspevvrgdghefaVDWWALGILTYEMlygttpfrgknrkETFRNVLMktpefvgqrTALTDLIQRLLEKdpvkrlgylrgaceikehvffKGVRWdlltdvlrppfipsreendltekamsgggvdiREYFenlrapppsmppsplpspshrsfaey
Flexible Loop (DISEMBL)
meatpppqpqttpsldlDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKvvdkstlhakheaerrarWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGhvtltdfdLSRNLVKKTafekqslnnnkfpvlpvtenpkrhRRILTRWlhalpenktglkktksarvspvsrrqqsfdngersnsfvgteEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTtpfrgknrkETFRNVLMktpefvgqrtALTDLIQRLLEKDPVKRLGYLRgaceikehvffkgvrwdllTDVLRPpfipsreendltekamsggGVDIREYFENLRapppsmppsplpspshrsfaey
Low Complexity Region (SEG)
MEAtpppqpqttpSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRApppsmppsplpspsHRSFAEY
Disordered region (IsUnstruct)
*****************DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN*KRHRRILTRWLHAL**************************************EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFI**************************************************
Disordered Region (DISOPRED)
********************KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK*****************************************************************ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVD***************************FAEY
Disordered Region (DISEMBL)
***********TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKT**************************NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPP*******************
Disordered Region (DISPRO)
*************SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK***LP************************************V********NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKA**************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPSHRSFAEY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q9LSF1	421	Serine/threonine-protein	no	no	0.813	0.795	0.455	1e-83
A2YBX5	589	Protein kinase G11A OS=Or	N/A	no	0.822	0.575	0.396	8e-67
Q0DCT8	589	Protein kinase G11A OS=Or	no	no	0.822	0.575	0.396	9e-67
Q9LFA2	934	Serine/threonine-protein	no	no	0.820	0.361	0.403	5e-66
Q64FQ2	525	Protein kinase PINOID 2 O	no	no	0.844	0.662	0.372	2e-65
O64682	438	Protein kinase PINOID OS=	no	no	0.813	0.764	0.410	5e-64
Q2RBR1	921	Phototropin-1B OS=Oryza s	no	no	0.771	0.345	0.384	9e-64
Q2QYY8	921	Phototropin-1A OS=Oryza s	no	no	0.771	0.345	0.384	1e-63
P15792	609	Protein kinase PVPK-1 OS=	N/A	no	0.873	0.591	0.383	7e-63
Q05999	578	Serine/threonine-protein	no	no	0.788	0.562	0.373	2e-62

>sp|Q9LSF1|OXI1_ARATH Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana GN=OXI1 PE=1 SV=1

 Score =  310 bits (794), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/362 (45%), Positives = 227/362 (62%), Gaps = 27/362 (7%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE-- 67
           + + +LD + L+ L +LG+GA G VFLV D  A        ALKV+ K  +  K +    
Sbjct: 7   KQSRALDFNRLEVLSLLGRGAKGVVFLVRDDDAKL-----LALKVILKEAIEKKKKGRES 61

Query: 68  -----RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF 122
                +R  +E  VLSR  HP  P L G L TD+ + +A+ YCPG +LN LR  Q++ +F
Sbjct: 62  EDDEYKRVSFEQGVLSRFDHPLFPSLHGVLATDKVIGYAIDYCPGQNLNSLRKMQSESMF 121

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           S  +IRFY +E++ A+++LHN GI YRDLKP+N++I+++GH+ L DFDLS NL  +T   
Sbjct: 122 SDEIIRFYAAELVLALDYLHNQGIVYRDLKPDNVMIQENGHLMLIDFDLSTNLAPRTPQP 181

Query: 183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG 242
             SL+     +       KR +R+  R+        +G+   +S  V   S    S  +G
Sbjct: 182 SPSLSKPSPTM-------KRKKRLF-RFTSFC---NSGISPQESISVHSSSTLAVSDSSG 230

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
           E+SNSFVGTEEYV+PEV+ GDGH+FAVDWW+LG++ YEMLYG TPFRG NRKETF  +L 
Sbjct: 231 EKSNSFVGTEEYVAPEVISGDGHDFAVDWWSLGVVLYEMLYGATPFRGSNRKETFYRILS 290

Query: 303 KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFI 362
           K P   G+ T+L DLI+RLLEKDP +R+       EIK H FF+GV W+ +  V RPP+I
Sbjct: 291 KPPNLTGETTSLRDLIRRLLEKDPSRRI----NVEEIKGHDFFRGVDWEKVILVSRPPYI 346

Query: 363 PS 364
           P+
Sbjct: 347 PA 348

Involved in oxidative burst-mediated signaling. Required for basal resistance to P.parasitica infection and root hair growth. Partly required for the activation of MPK3 and MPK6 by hydrogen peroxide and cellulase elicitor.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1

 Score =  254 bits (649), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 215/371 (57%), Gaps = 32/371 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L L + K LK LG G +G+V+L          +  FA+KV+DK++L ++ +   RA+ E 
Sbjct: 190 LGLSHFKLLKKLGCGDIGSVYLSELNGT----KSYFAMKVMDKASLASRKKL-LRAQTEK 244

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            +L  L HPFLP L    ETD+F    + +CPGGDL+ LR +Q  + F    ++FY++EI
Sbjct: 245 EILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEI 304

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR------NLVKKTAFEKQSL-- 186
           + A+E+LH +GI YRDLKPEN+L+R+ GH+ L+DFDLS        L++ +  + ++L  
Sbjct: 305 LLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDAEALRK 364

Query: 187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTG---LKKTKSAR------VSPVSRRQQ 237
           NN  + V P    P      + +   A P    G     K+K  R      V+ VS   +
Sbjct: 365 NNQAYCVQPACVEPS----CMIQPSCATPTTCFGPRFFSKSKKDRKPKPEVVNQVSPWPE 420

Query: 238 SFD--NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
                +  RS SFVGT EY++PE+++G+GH  AVDWW  GI  YE+L+G TPF+G   + 
Sbjct: 421 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRA 480

Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL 352
           T  NV+   ++ PE+     +  DLI+ LL K+P +RLG  RGA EIK+H FF+GV W L
Sbjct: 481 TLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWAL 540

Query: 353 LTDVLRPPFIP 363
           +     PP +P
Sbjct: 541 IR-CASPPEVP 550

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0DCT8|G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1

 Score =  254 bits (649), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 215/371 (57%), Gaps = 32/371 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L L + K LK LG G +G+V+L          +  FA+KV+DK++L ++ +   RA+ E 
Sbjct: 190 LGLSHFKLLKKLGCGDIGSVYLSELSGT----KSYFAMKVMDKASLASRKKL-LRAQTEK 244

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            +L  L HPFLP L    ETD+F    + +CPGGDL+ LR +Q  + F    ++FY++EI
Sbjct: 245 EILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEI 304

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR------NLVKKTAFEKQSL-- 186
           + A+E+LH +GI YRDLKPEN+L+R+ GH+ L+DFDLS        L++ +  + ++L  
Sbjct: 305 LLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDAEALRK 364

Query: 187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTG---LKKTKSAR------VSPVSRRQQ 237
           NN  + V P    P      + +   A P    G     K+K  R      V+ VS   +
Sbjct: 365 NNQAYCVQPACVEPS----CMIQPSCATPTTCFGPRFFSKSKKDRKPKPEVVNQVSPWPE 420

Query: 238 SFD--NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
                +  RS SFVGT EY++PE+++G+GH  AVDWW  GI  YE+L+G TPF+G   + 
Sbjct: 421 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRA 480

Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL 352
           T  NV+   ++ PE+     +  DLI+ LL K+P +RLG  RGA EIK+H FF+GV W L
Sbjct: 481 TLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWAL 540

Query: 353 LTDVLRPPFIP 363
           +     PP +P
Sbjct: 541 IR-CASPPEVP 550

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFA2|KIPK_ARATH Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1

 Score =  251 bits (642), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 152/377 (40%), Positives = 206/377 (54%), Gaps = 39/377 (10%)

Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           SL L +   LK LG G +GTV+L      +    C FA+KV+D   L A+ +   RA+ E
Sbjct: 532 SLGLRHFNLLKKLGCGDIGTVYLAELIGTN----CLFAIKVMDNEFL-ARRKKSPRAQAE 586

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             +L  L HPFLP L     +D      + YCPGGDL+VLR KQ  R F     RFY++E
Sbjct: 587 REILKMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRCFPEPAARFYVAE 646

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS-RNLVKKTAFEKQS------- 185
           I+ A+E+LH +GI YRDLKPENIL+R+ GH+ LTDFDLS R  V  T     S       
Sbjct: 647 ILLALEYLHMLGIIYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLVRSNSPPGKDPA 706

Query: 186 ------LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF 239
                   +N      +TE   +    ++ +   L  N+   +K K  R   +S+ QQ  
Sbjct: 707 RISGPYNTSNCIQPFCITEPSCQ----VSCFSPRLSSNQQQGRKPK--RGDHLSKTQQHL 760

Query: 240 DNG----------ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR 289
                         RSNSFVGT EY++PE+++G+GH  AVDWW  G+L YE+LYG TPF+
Sbjct: 761 SRSLPQLVAEPTEARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVLLYELLYGKTPFK 820

Query: 290 GKNRKETFRNVLMKTPEFVGQ---RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           G N  ET  NV+++  +F           DLI+ LL K+P  RLG  +G+ EIK H FF+
Sbjct: 821 GYNNDETLANVVLQNLKFPDSPLVSFQAKDLIRGLLVKEPENRLGSEKGSVEIKRHPFFE 880

Query: 347 GVRWDLLTDVLRPPFIP 363
           G+ W L+   + PP +P
Sbjct: 881 GLNWALIRCAI-PPELP 896

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q64FQ2|PID2_ARATH Protein kinase PINOID 2 OS=Arabidopsis thaliana GN=PID2 PE=1 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 220/422 (52%), Gaps = 74/422 (17%)

Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           ++ L++ + LK LG G +G+V+L   R +  TA   +A+KVVDK  +  K +  R A  E
Sbjct: 81  AVGLEHFRLLKRLGSGDIGSVYLCQIRGSPETAF--YAMKVVDKEAVAVKKKLGR-AEME 137

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
            ++L  L HPF P L  + E   +    + YCPGGDL  +R +Q  + F+ S  RFY +E
Sbjct: 138 KKILGMLDHPFCPTLYAAFEASHYSFLVMEYCPGGDLYAVRLRQPSKRFTISSTRFYAAE 197

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK--- 190
            + A+E+LH MGI YRDLKPEN+LIR+ GHV L+DFDLS     K     Q L++N    
Sbjct: 198 TLVALEYLHMMGIVYRDLKPENVLIREDGHVMLSDFDLSF----KCDVVPQFLSDNDRDR 253

Query: 191 ----------------------FPVLPV------TENPKRHRRILTRWLHALPENKTGLK 222
                                  P+ PV      T + +R + ++T  +H   EN  G  
Sbjct: 254 GHQEDDDDISIRRKCSTPSCTTTPLNPVISCFSPTSSRRRKKNVVTTTIH---ENAAGTS 310

Query: 223 KT-KSARVSPVSRRQQS----FDNG-----------------ERSNSFVGTEEYVSPEVV 260
            + KS  VS    R  S      NG                  RS SFVGT EY++PEV+
Sbjct: 311 DSVKSNDVSRTFSRSPSSCSRVSNGLRDISGGCPSIFAEPINARSKSFVGTHEYLAPEVI 370

Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL----------MKTPEFVGQ 310
            G GH  AVDWW  GI  YEM++G TPF+G N ++T  N+L          + +P+    
Sbjct: 371 SGQGHGSAVDWWTYGIFLYEMIFGRTPFKGDNNEKTLVNILKAPLTFPKVIVNSPKEYED 430

Query: 311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDL 370
                DLI +LL K+P KRLG L+G+ EIK H FF+GV W L+  + +PP++P  E +  
Sbjct: 431 MVNAQDLIIKLLVKNPKKRLGSLKGSIEIKRHEFFEGVNWALIRSI-KPPWVPKEETSHK 489

Query: 371 TE 372
           T+
Sbjct: 490 TK 491

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Plays a minor role in the regulation of cellular auxin efflux and cotyledon organogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64682|PID_ARATH Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1

 Score =  245 bits (625), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 147/358 (41%), Positives = 191/358 (53%), Gaps = 23/358 (6%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCP-FALKVVDKSTLHAKHEAERRARWE 73
           L   + + ++ +G G +GTV+L      +  +R   FA+KVVDK  L  K +  R A  E
Sbjct: 70  LTFRDFRLMRRIGAGDIGTVYLCRLAGDEEESRSSYFAMKVVDKEALALKKKMHR-AEME 128

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             +L  L HPFLP L    E   F    + YC GGDL+ LR++Q  R FS S  RFY +E
Sbjct: 129 KTILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHRQPHRRFSLSSARFYAAE 188

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           ++ A+E+LH +GI YRDLKPENIL+R  GH+ L+DFDLS       A E  S +    P 
Sbjct: 189 VLVALEYLHMLGIIYRDLKPENILVRSDGHIMLSDFDLSLCSDSIAAVESSSSS----PE 244

Query: 194 LPVTENPKRHRRILTRWLHALPENKT-GLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                +P+R  R+   +   L   K   L+ T+     PV+          RS SFVGT 
Sbjct: 245 NQQLRSPRRFTRLARLFQRVLRSKKVQTLEPTRLFVAEPVT---------ARSGSFVGTH 295

Query: 253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT 312
           EYV+PEV  G  H  AVDWWA G+  YEM+YG TPF         RN++ +   F     
Sbjct: 296 EYVAPEVASGGSHGNAVDWWAFGVFLYEMIYGKTPFVAPTNDVILRNIVKRQLSFPTDSP 355

Query: 313 ALT------DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPS 364
           A        +LI  LL KDP KRLG  RGA E+K H FFKG+ + L+   L PP IPS
Sbjct: 356 ATMFELHARNLISGLLNKDPTKRLGSRRGAAEVKVHPFFKGLNFALIR-TLTPPEIPS 412

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Acts as a positive regulator of cellular auxin efflux and regulates organ development by enhancing polar auxin transport. Phosphorylates conserved serine residues in the PIN auxin efflux carriers. Phosphorylation of PIN proteins is required and sufficient for apical-basal PIN polarity that enables directional intercellular auxin fluxes, which mediate differential growth, tissue patterning and organogenesis. Acts in association with PIN1 to control the establishment of bilateral symmetry and promotion of cotyledon outgrowth. Regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport. Required for polarization of PIN3-dependent auxin transport for hypocotyl gravitropic response. The protein kinase activity of PID is essential for its auxin efflux regulatory function. PID kinase and PP2A phosphatase activities antagonistically regulate phosphorylation of PIN proteins, affecting PIN sorting.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2

 Score =  244 bits (623), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 197/377 (52%), Gaps = 59/377 (15%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
           ++  S+ L + + +K LG G  G+V LV            FA+K +DKS +  +++  R 
Sbjct: 584 ESGESIGLKHFRPVKPLGSGDTGSVHLVELLNTGEY----FAMKAMDKSIMLNRNKVHR- 638

Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
           A  E ++L  L HPFLP L  S +T   +     YCPGG+L VL   Q  +V     +RF
Sbjct: 639 ATAERQILDLLDHPFLPTLYASFQTKTHICLITDYCPGGELFVLLDNQPLKVLHEDAVRF 698

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS-------RNLVKKTAFE 182
           Y +E++ A+E+LH  GI YRDLKPENIL+ + GH++LTDFDLS       +  + + A E
Sbjct: 699 YAAEVVVALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQVFLPEDADE 758

Query: 183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG 242
           K+   N  +P+      P R                                        
Sbjct: 759 KKGRKNGSYPIF--FAEPMRA--------------------------------------- 777

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
             SNSFVGTEEY++PE++ G GH  AVDWWALGIL YEMLYG TPFRGK R+ TF N+L 
Sbjct: 778 --SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILH 835

Query: 303 KT---PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRP 359
           K    P  +    A   L+ RLL +DP  RLG   GA EIK H FF+G+ W L+     P
Sbjct: 836 KDIRFPASISVSLAARQLMYRLLHRDPANRLGSYEGANEIKGHPFFRGINWPLIRATAPP 895

Query: 360 PF-IPSREENDLTEKAM 375
              IP   ++D+ +K +
Sbjct: 896 KLEIPLFSKDDMEKKGL 912

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2QYY8|PHT1A_ORYSJ Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2

 Score =  244 bits (623), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/377 (38%), Positives = 197/377 (52%), Gaps = 59/377 (15%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
           ++  S+ L + + +K LG G  G+V LV            FA+K +DKS +  +++  R 
Sbjct: 584 ESGESIGLKHFRPVKPLGSGDTGSVHLVELLNTGEY----FAMKAMDKSIMLNRNKVHR- 638

Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
           A  E ++L  L HPFLP L  S +T   +     YCPGG+L VL   Q  +V     +RF
Sbjct: 639 ATAERQILDLLDHPFLPTLYASFQTKTHICLITDYCPGGELFVLLDNQPLKVLHEDAVRF 698

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS-------RNLVKKTAFE 182
           Y +E++ A+E+LH  GI YRDLKPENIL+ + GH++LTDFDLS       +  + + A E
Sbjct: 699 YAAEVVVALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDLSCLTSCRPQVFLPEDADE 758

Query: 183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG 242
           K+   N  +P+      P R                                        
Sbjct: 759 KKGRKNGSYPIF--FAEPMRA--------------------------------------- 777

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
             SNSFVGTEEY++PE++ G GH  AVDWWALGIL YEMLYG TPFRGK R+ TF N+L 
Sbjct: 778 --SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILH 835

Query: 303 KT---PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRP 359
           K    P  +    A   L+ RLL +DP  RLG   GA EIK H FF+G+ W L+     P
Sbjct: 836 KDIRFPASISVSLAARQLMYRLLHRDPANRLGSYEGANEIKGHPFFRGINWPLIRATAPP 895

Query: 360 PF-IPSREENDLTEKAM 375
              IP   ++D+ +K +
Sbjct: 896 KLEIPLFSKDDMEKKGL 912

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1

 Score =  241 bits (615), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 214/391 (54%), Gaps = 31/391 (7%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L++ + + LK LG G +G+V+L    A     R  FA+KV++K+ L A  +   RA+ E 
Sbjct: 224 LEMRHFRLLKKLGCGDIGSVYL----AELSGTRTSFAMKVMNKTEL-ANRKKLLRAQTER 278

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            +L  L HPFLP L    ET+ F    + +CPGGDL+ LR +Q  + FS   +RFY++E+
Sbjct: 279 EILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEV 338

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN----NNK 190
           + ++E+LH +GI YRDLKPEN+L+R+ GH+ L+DFDLS          K S N    ++ 
Sbjct: 339 LLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCSVSPTLVKSSNNLQTKSSG 398

Query: 191 FPVLPVTENPK--------RHRRILTRWLHALPENKTGLKKTKSA--RVSPVSRRQQSFD 240
           + V P    P         +      R+L    +     K       +V+P+        
Sbjct: 399 YCVQPSCIEPTCVMQPDCIKPSCFTPRFLSGKSKKDKKSKPKNDMHNQVTPLPELIAEPT 458

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           N  RS SFVGT EY++PE+++G+GH  AVDWW  GI  YE+L+G TPF+G   + T  NV
Sbjct: 459 NA-RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNV 517

Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVL 357
           +   ++ PE      A  DLI+ LL K+P  RL Y RGA EIK+H FF+ V W L+    
Sbjct: 518 IGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIR-CA 576

Query: 358 RPPFIPS------REENDLTEKAMSGGGVDI 382
            PP +P       + E DL  K  SG  +DI
Sbjct: 577 TPPEVPRQVINLPQTEKDLGVKP-SGNYLDI 606

Phaseolus vulgaris (taxid: 3885)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05999|KPK7_ARATH Serine/threonine-protein kinase AtPK7 OS=Arabidopsis thaliana GN=PK7 PE=2 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 204/383 (53%), Gaps = 58/383 (15%)

Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           SL+  + K +K LG G +G V+L        +    FA+KV++K+ + A+ +  R A+ E
Sbjct: 176 SLEAKDFKLIKKLGGGDIGNVYLAELIGTGVS----FAVKVMEKAAIAARKKLVR-AQTE 230

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             +L  L HPFLP L    ET+      + +CPGGDL+ LR KQ  + F     RFY++E
Sbjct: 231 KEILQSLDHPFLPTLYSHFETEMNSCLVMEFCPGGDLHSLRQKQRGKYFPEQAARFYVAE 290

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL---------------------- 171
           ++ A+E+LH +GI YRDLKPEN+L+R+ GH+ L+DFDL                      
Sbjct: 291 VLLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVRFAAITLESKS 350

Query: 172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPK-----RHRRI---LTRWLHALPENKTGLKK 223
           S   ++ T  ++ S       + PV   P+     +HR+    ++R +  LPE       
Sbjct: 351 SSYCIQPTCVDQSSCIVQPDCIQPVCFTPRFLSKGKHRKKSNDMSRQIRPLPE------- 403

Query: 224 TKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY 283
                  P S          RS SFVGT EY++PE+++G+GH  AVDWW  GI  YE+L+
Sbjct: 404 ---LIAEPTS---------ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLF 451

Query: 284 GTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK 340
           G TPFRG + + T  NV+   ++ PE      A  DLI+ LL K+P  RL Y RGA EIK
Sbjct: 452 GITPFRGGDNRATLFNVVGQPLRFPEHPNVSFAARDLIRGLLVKEPQHRLAYRRGATEIK 511

Query: 341 EHVFFKGVRWDLLTDVLRPPFIP 363
           +H FF+ V W L+     PP IP
Sbjct: 512 QHPFFQSVNWALIR-CTSPPQIP 533

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
255544806	440	serine/threonine protein kinase, putativ	0.922	0.863	0.738	1e-165
359478402	400	PREDICTED: serine/threonine-protein kina	0.949	0.977	0.710	1e-158
147784010	400	hypothetical protein VITISV_023824 [Viti	0.944	0.972	0.713	1e-158
224075780	442	predicted protein [Populus trichocarpa]	0.917	0.855	0.701	1e-157
449448750	421	PREDICTED: serine/threonine-protein kina	0.902	0.883	0.699	1e-152
449503598	421	PREDICTED: serine/threonine-protein kina	0.902	0.883	0.699	1e-152
356541914	419	PREDICTED: serine/threonine-protein kina	0.956	0.940	0.667	1e-150
224053366	377	predicted protein [Populus trichocarpa]	0.868	0.949	0.700	1e-149
357472907	408	Cyclin-dependent kinase-like protein [Me	0.859	0.867	0.672	1e-141
356541183	411	PREDICTED: serine/threonine-protein kina	0.881	0.883	0.656	1e-139

>gi|255544806|ref|XP_002513464.1| serine/threonine protein kinase, putative [Ricinus communis] gi|223547372|gb|EEF48867.1| serine/threonine protein kinase, putative [Ricinus communis]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/394 (73%), Positives = 332/394 (84%), Gaps = 14/394 (3%)

Query: 8   QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE 67
           +P + P L+ DNL+A+K+LGKGAMGTVFLVHDRAADP A+ P+ALKVV+KSTLH K EA+
Sbjct: 28  EPPSLPELNFDNLRAIKVLGKGAMGTVFLVHDRAADPGAKNPYALKVVEKSTLHTKFEAD 87

Query: 68  RRARWEIRVLSRLS----HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFS 123
           RRARWEI+VL +LS    HPFLP L+ SLET EFLAWAVP+CPGGDLNVLRY+QNDRVFS
Sbjct: 88  RRARWEIQVLKKLSGKNSHPFLPHLISSLETPEFLAWAVPFCPGGDLNVLRYRQNDRVFS 147

Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
            +V+RFYL+EI+CA++HLH+MGI YRDLKPENIL++QSGHVTLTDFDLSR L K T   K
Sbjct: 148 SAVVRFYLAEIVCALQHLHDMGIVYRDLKPENILVQQSGHVTLTDFDLSRTLTKPTV--K 205

Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALP--ENKTGLKKTKSARVSPVSR-RQQSFD 240
             L++     L + + P  HRR LTRWL  +P    K GL+K KSARVSPVSR R+ SF 
Sbjct: 206 SILSSC---ALQLQKKPNHHRRNLTRWLPMIPLHNEKNGLRKAKSARVSPVSRTRKLSFS 262

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           NGERSNSFVGTEEYVSPEVVRGDGHEF+VDWWALGILTYEMLYGTTPF+GKNRKETFRN+
Sbjct: 263 NGERSNSFVGTEEYVSPEVVRGDGHEFSVDWWALGILTYEMLYGTTPFKGKNRKETFRNI 322

Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPP 360
           L K PEFVG+R  LTDLI+RLLEKDP KRLGY RGACEIKEHVFFKGVRWDLLT+VLRPP
Sbjct: 323 LYKKPEFVGRRNELTDLIERLLEKDPTKRLGYQRGACEIKEHVFFKGVRWDLLTEVLRPP 382

Query: 361 FIPSREE-NDLTEKAMSGG-GVDIREYFENLRAP 392
           FIP+R+E N LTE   SG  G+DIREYFE+LR P
Sbjct: 383 FIPARDETNSLTETVTSGSDGMDIREYFEDLRVP 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478402|ref|XP_002282983.2| PREDICTED: serine/threonine-protein kinase OXI1-like [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/404 (71%), Positives = 331/404 (81%), Gaps = 13/404 (3%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
             +P L LD+L A+++LGKGAMGTVFLVHDR ADP+A  PFALKVVDK + H K +A+RR
Sbjct: 3   NASPELHLDDLPAIQVLGKGAMGTVFLVHDRLADPSALSPFALKVVDKFSHHTKLDADRR 62

Query: 70  ARWEIRVLSRLS---HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV 126
           ARWEI VL RLS   HPFLP L+GSLET EFLAWAVP+CPGGDLNVLRY Q DRVFSPSV
Sbjct: 63  ARWEISVLKRLSNPEHPFLPTLIGSLETPEFLAWAVPFCPGGDLNVLRYHQTDRVFSPSV 122

Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
           IRFY++EIICA+EHLH+MGIAYRDLKPEN+LI+QSGHVTLTDFDLSR+L  +T   K  +
Sbjct: 123 IRFYVAEIICALEHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRSLKPRTV--KTLI 180

Query: 187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN 246
            ++   + P  E  +RHRR LTR L  +  +K GLKK KSARVSPVSRR+QSF NGERSN
Sbjct: 181 TSDPIELDP-PEIRQRHRRNLTR-LVTIVSDKGGLKKAKSARVSPVSRRKQSFSNGERSN 238

Query: 247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE 306
           SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF+GKNRKETFRNVLMKTPE
Sbjct: 239 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLMKTPE 298

Query: 307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSRE 366
           F+G+RTALTDLI RLLEKDP KRLGY RGA EIK+HVFF+G++WD LT+VLRPPF+PS +
Sbjct: 299 FIGKRTALTDLIGRLLEKDPTKRLGYNRGASEIKQHVFFRGLQWDKLTEVLRPPFLPSMD 358

Query: 367 ENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPSHRSFA 410
           +  LTE  ++    DIREYF+  +     + PS  PS S RS +
Sbjct: 359 DELLTEN-ITADEFDIREYFQKTK-----VKPSLTPSTSSRSVS 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784010|emb|CAN67877.1| hypothetical protein VITISV_023824 [Vitis vinifera]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/402 (71%), Positives = 330/402 (82%), Gaps = 13/402 (3%)

Query: 12  TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           +P L LD+L A+++LGKGAMGTVFLVHDR ADP+A  PFALKVVDK + H K +A+RRAR
Sbjct: 5   SPELHLDDLPAIQVLGKGAMGTVFLVHDRLADPSALSPFALKVVDKFSHHTKLDADRRAR 64

Query: 72  WEIRVLSRLS---HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           WEI VL RLS   HPFLP L+GSLET EFLAWAVP+CPGGDLNVLRY Q DRVFSPSVIR
Sbjct: 65  WEISVLKRLSNPEHPFLPTLIGSLETPEFLAWAVPFCPGGDLNVLRYHQTDRVFSPSVIR 124

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
           FY++EIICA+EHLH+MGIAYRDLKPEN+LI+QSGHVTLTDFDLSR+L  +T   K  + +
Sbjct: 125 FYVAEIICALEHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRSLKPRTV--KTLITS 182

Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
           +   + P  E  +RHRR LTR L  +  +K GLKK KSARVSPVSRR+QSF NGERSNSF
Sbjct: 183 DPIELDP-PEIRQRHRRNLTR-LVTIVSDKGGLKKAKSARVSPVSRRKQSFSNGERSNSF 240

Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV 308
           VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF+GKNRKETFRNVLMKTPEF+
Sbjct: 241 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLMKTPEFI 300

Query: 309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN 368
           G+RTALTDLI RLLEKDP KRLGY RGA EIK+HVFF+G++WD LT VLRPPF+PS ++ 
Sbjct: 301 GKRTALTDLIGRLLEKDPTKRLGYNRGASEIKQHVFFRGLQWDKLTQVLRPPFLPSMDDE 360

Query: 369 DLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPSHRSFA 410
            LTE  ++    DIREYF+  +     + PS  PS S RS +
Sbjct: 361 LLTEN-ITADEFDIREYFQKTK-----VKPSLTPSTSSRSVS 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075780|ref|XP_002304764.1| predicted protein [Populus trichocarpa] gi|222842196|gb|EEE79743.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/398 (70%), Positives = 326/398 (81%), Gaps = 20/398 (5%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
           Q    L  D+++A+K+LGKGAMGTVFLVH++  DPTA+ PFALKVV+KSTLH K +AERR
Sbjct: 29  QHQKDLVFDSIRAIKVLGKGAMGTVFLVHNQETDPTAKNPFALKVVEKSTLHTKFDAERR 88

Query: 70  ARWEIRVLSRLS-----HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSP 124
           ARWEI+VL++LS     HPFLP L+ S+ET EFLAWAVP+CPGGDLNVLR++QND VFSP
Sbjct: 89  ARWEIQVLNQLSTPKTAHPFLPHLISSVETQEFLAWAVPFCPGGDLNVLRHRQNDHVFSP 148

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ 184
           +VIRFYL+EI+CA++HLH MGI +RDLKPENILI+ SGHVTLTDFDLSR L +KT     
Sbjct: 149 AVIRFYLAEIVCALDHLHEMGIVFRDLKPENILIQHSGHVTLTDFDLSRTLTRKTV-RNL 207

Query: 185 SLNNNKFPVLPVTEN---------PKRHRRILTRW--LHALPENKTGLKKTKSARVSPVS 233
             N        +T N          ++HRR LTRW  ++   + K GLKK KSARVSPVS
Sbjct: 208 ICNAAASGCHLITGNRIEQPQKKQQQQHRRNLTRWWFVNDNQQKKNGLKKAKSARVSPVS 267

Query: 234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR 293
           RR+ SF+NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGIL+YEMLYGTTPF+GKNR
Sbjct: 268 RRKLSFNNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILSYEMLYGTTPFKGKNR 327

Query: 294 KETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
           KETFRNVL+K PEFVG+R  LTDLI+RLLEKDP +RLGY RGACEIKEH FFKGVRWDLL
Sbjct: 328 KETFRNVLLKKPEFVGKRNDLTDLIERLLEKDPTQRLGYQRGACEIKEHGFFKGVRWDLL 387

Query: 354 TDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRA 391
           T+VLRPPFIPSRE+ +LT   ++ GGVDIR+YFE+LRA
Sbjct: 388 TEVLRPPFIPSREDGELT---VTTGGVDIRKYFEDLRA 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448750|ref|XP_004142128.1| PREDICTED: serine/threonine-protein kinase OXI1-like [Cucumis sativus]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/383 (69%), Positives = 310/383 (80%), Gaps = 11/383 (2%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           LDL  L+ +K+LGKGAMGTVFLVHDR +D +A  PFALKVV+KS+  +K +AERRARWEI
Sbjct: 13  LDLHTLRPIKVLGKGAMGTVFLVHDRISDESAHFPFALKVVEKSSFASKVDAERRARWEI 72

Query: 75  RVLSRLS-----HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
           +VLSRLS     HPFLP ++GS E+DEFL WAVPYCPGGDLNVLRY+Q DRVFSP+VIRF
Sbjct: 73  QVLSRLSFPKPPHPFLPDIVGSFESDEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRF 132

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN- 188
           YL+EI+CA++HLH+MGI YRDLKPEN+LI+QSGHVTLTDFDLSR L ++T  +  SL N 
Sbjct: 133 YLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRTLTRRTVKDVVSLENT 192

Query: 189 -NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS 247
            ++ P + V   P R+   LTRW+ A    K GLKK KSARVSPVSRR+ SF NGERSNS
Sbjct: 193 GHEKPPIAVRRKPGRN---LTRWIMATSNVKNGLKKAKSARVSPVSRRKSSFTNGERSNS 249

Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF 307
           FVGTEEYVSPEVV+GDGHEFAVDWWALGILTYEMLYGTTPF+GKNRKETFRNVL+K PE 
Sbjct: 250 FVGTEEYVSPEVVKGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPEL 309

Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREE 367
           +G+R+ LTDLI+RLL KDP KRLGY  GACEIKEH FF GV+WDLLT+V RPPF+P REE
Sbjct: 310 IGKRSDLTDLIERLLVKDPTKRLGYAGGACEIKEHAFFNGVKWDLLTEVTRPPFLPQREE 369

Query: 368 NDLTEKAMSGGGVDIREYFENLR 390
            + T      G V I EYF   R
Sbjct: 370 TEWTGNVQL-GCVSITEYFHKER 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503598|ref|XP_004162082.1| PREDICTED: serine/threonine-protein kinase OXI1-like [Cucumis sativus]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/383 (69%), Positives = 310/383 (80%), Gaps = 11/383 (2%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           LDL  L+ +K+LGKGAMGTVFLVHDR +D +A  PFALKVV+KS+  +K +AERRARWEI
Sbjct: 13  LDLHTLRPIKVLGKGAMGTVFLVHDRISDESAHFPFALKVVEKSSFASKVDAERRARWEI 72

Query: 75  RVLSRLS-----HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
           +VLSRLS     HPFLP ++GS E+DEFL WAVPYCPGGDLNVLRY+Q DRVFSP+VIRF
Sbjct: 73  QVLSRLSFPKPPHPFLPDIVGSFESDEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRF 132

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN- 188
           YL+EI+CA++HLH+MGI YRDLKPEN+LI+QSGHVTLTDFDLSR L ++T  +  SL N 
Sbjct: 133 YLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRTLTRRTVKDVVSLENT 192

Query: 189 -NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS 247
            ++ P + V   P R+   LTRW+ A    K GLKK KSARVSPVSRR+ SF NGERSNS
Sbjct: 193 GHEKPPIAVRRKPGRN---LTRWIMATSNVKNGLKKAKSARVSPVSRRKSSFTNGERSNS 249

Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF 307
           FVGTEEYVSPEVV+GDGHEFAVDWWALGILTYEMLYGTTPF+GKNRKETFRNVL+K PE 
Sbjct: 250 FVGTEEYVSPEVVKGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPEL 309

Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREE 367
           +G+R+ LTDLI+RLL KDP KRLGY  GACEIKEH FF GV+WDLLT+V RPPF+P REE
Sbjct: 310 IGKRSDLTDLIERLLVKDPTKRLGYAGGACEIKEHAFFNGVKWDLLTEVTRPPFLPQREE 369

Query: 368 NDLTEKAMSGGGVDIREYFENLR 390
            + T      G V I EYF   R
Sbjct: 370 TEWTGNGQL-GCVSITEYFHKER 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541914|ref|XP_003539417.1| PREDICTED: serine/threonine-protein kinase OXI1-like [Glycine max]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 277/415 (66%), Positives = 328/415 (79%), Gaps = 21/415 (5%)

Query: 3   ATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA 62
             PPP  +    LDLD+LK LK+LGKG MGTVFLV  +AA+ T    FALKVVDK+ +HA
Sbjct: 6   TAPPPWQE----LDLDSLKPLKVLGKGGMGTVFLV--QAANNTR---FALKVVDKTCVHA 56

Query: 63  KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF 122
           K +AERRARWEI+VLS LSHPFLP L+G+ E+ +FLAWA+PYCPGGDLNVLRY+Q DR F
Sbjct: 57  KLDAERRARWEIQVLSTLSHPFLPSLMGTFESPQFLAWALPYCPGGDLNVLRYRQTDRAF 116

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           SP+VIRFY++EI+CA++HLH+MGIAYRDLKPEN+L++ +GH+TLTDFDLSR L  K    
Sbjct: 117 SPAVIRFYVAEILCALDHLHSMGIAYRDLKPENVLVQNTGHITLTDFDLSRKLNPKPKPN 176

Query: 183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALP-------ENKTGLKKTKSARVSPVSRR 235
            Q + +   P   V E  ++HRR  +RW+   P        NK GLKK KSARVSPVSRR
Sbjct: 177 PQ-VPSIPLPNSNVPEPRRKHRRNFSRWISLFPPDGTHHNNNKNGLKKAKSARVSPVSRR 235

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           + SF NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGIL YEMLYGTTPF+GKNRKE
Sbjct: 236 KPSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILIYEMLYGTTPFKGKNRKE 295

Query: 296 TFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD 355
           TFRNV+ K P FVG+RTALTDLI++LLEKDP KRLGY RGA EIKEH FF+GVRW+LLT+
Sbjct: 296 TFRNVITKPPVFVGKRTALTDLIEKLLEKDPTKRLGYTRGAVEIKEHEFFRGVRWELLTE 355

Query: 356 VLRPPFIPSREE--NDLTEKAMS-GGGVDIREYFENLRAPPPSMPPSPLPSPSHR 407
           V+RPPFIP+R++   D T++      G DIR YF NL++  PS+P SPLPSPS R
Sbjct: 356 VVRPPFIPTRDDGAGDSTDRISDRNCGFDIRGYFLNLKS-SPSLPGSPLPSPSCR 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053366|ref|XP_002297784.1| predicted protein [Populus trichocarpa] gi|222845042|gb|EEE82589.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/374 (70%), Positives = 306/374 (81%), Gaps = 16/374 (4%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
           Q    LD D+++A+K+LGKGAMGTVFLVH++  D TA+  FALKVV+KSTLH K +AERR
Sbjct: 3   QHQKDLDFDSIRAIKVLGKGAMGTVFLVHNQETDSTAKNRFALKVVEKSTLHTKFDAERR 62

Query: 70  ARWEIRVLSRLS-----HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSP 124
           ARWEI+VL++LS     HPFLP L+ S+ET EFLAW+VP+CPGGDLNVLR++QND VFSP
Sbjct: 63  ARWEIQVLNQLSTPKTTHPFLPNLISSIETQEFLAWSVPFCPGGDLNVLRHRQNDHVFSP 122

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE-- 182
           +VIRFYL+EI+CA++HLH MGI YRDLKPENILI+ SGHVTLTDFDLSR L +KT     
Sbjct: 123 AVIRFYLAEIVCALDHLHQMGIVYRDLKPENILIQHSGHVTLTDFDLSRTLTRKTVRNLV 182

Query: 183 ---KQSLNN----NKFPVLPVTENPKRHRRILTRW--LHALPENKTGLKKTKSARVSPVS 233
                S NN    ++    P  +  + H R LTRW  ++ +   K GLKK KSARVSPVS
Sbjct: 183 PNAAASCNNLITVSEIEQQPQKKQQQHHIRNLTRWWFVNDVQHKKNGLKKAKSARVSPVS 242

Query: 234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR 293
           RR+ SF+NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGIL++EMLYGTTPF GKNR
Sbjct: 243 RRKLSFNNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILSFEMLYGTTPFVGKNR 302

Query: 294 KETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
           KETFRNVL K PEF+G+R  LTDLI+RLLEKDP +RLGY RGACEIKEHVFFKGVRWDLL
Sbjct: 303 KETFRNVLAKKPEFIGKRNELTDLIERLLEKDPTQRLGYQRGACEIKEHVFFKGVRWDLL 362

Query: 354 TDVLRPPFIPSREE 367
           T+VLRPPFIPSR++
Sbjct: 363 TEVLRPPFIPSRDD 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472907|ref|XP_003606738.1| Cyclin-dependent kinase-like protein [Medicago truncatula] gi|355507793|gb|AES88935.1| Cyclin-dependent kinase-like protein [Medicago truncatula]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/379 (67%), Positives = 306/379 (80%), Gaps = 25/379 (6%)

Query: 31  MGTVFLVHD--RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKL 88
           MGTVFLVH+       T    FALKVVDK+++HAK +AERRARWEI+VLS LSHPFLP +
Sbjct: 1   MGTVFLVHNPTTTTTTTNTTLFALKVVDKTSIHAKLDAERRARWEIQVLSTLSHPFLPSI 60

Query: 89  LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAY 148
           LG+ E+ +FLAWA+PYCPGGDLNVLRY+QNDRVFSPSV+RFYL+EI+CA++HLH+MGI Y
Sbjct: 61  LGTYESPQFLAWALPYCPGGDLNVLRYRQNDRVFSPSVVRFYLAEILCALDHLHSMGIVY 120

Query: 149 RDLKPENILIRQSGHVTLTDFDLSRNLVKKT-----AFEKQSLNNNKFPVLPVTENPKRH 203
           RDLKPEN+LI+ SGHVTLTDFDLSR L  +T     A     L ++KFP     E+ ++H
Sbjct: 121 RDLKPENVLIQHSGHVTLTDFDLSRKLNPRTFKTVVATPPPPLPDSKFP-----ESSRKH 175

Query: 204 RRILTRWLHALPENKT---------GLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
           RR  +RW+  LP   +          LKK KSARVSPVSRR+ SF NGERSNSFVGTEEY
Sbjct: 176 RRNFSRWIPLLPTESSHNHNRLHALNLKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEY 235

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTAL 314
           VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF+GKNRKETF+NVLMK+PEFVG+RT L
Sbjct: 236 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFKNVLMKSPEFVGKRTEL 295

Query: 315 TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEND---LT 371
           TDLI++LLEKDP KRLGY RGA EIKEH FF+GVRW++LT+V+RPPF+P+R ++     +
Sbjct: 296 TDLIEKLLEKDPKKRLGYSRGAVEIKEHAFFRGVRWEILTEVIRPPFLPARYDDAGEFSS 355

Query: 372 EKAMSG-GGVDIREYFENL 389
           EK  +G GGVDI++YF+ +
Sbjct: 356 EKLSNGTGGVDIKDYFQRM 374

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541183|ref|XP_003539060.1| PREDICTED: serine/threonine-protein kinase OXI1-like [Glycine max]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/381 (65%), Positives = 304/381 (79%), Gaps = 18/381 (4%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LGKGAMGTVFLV D     T   PFALKVVDK+ +HAK +AERRARWEI+VLS LSHPF
Sbjct: 24  VLGKGAMGTVFLVQD-----TTNTPFALKVVDKTCVHAKLDAERRARWEIQVLSTLSHPF 78

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
           LP L+G+LE+ +FLAWA+PYCPGGDLN LRY+Q DR FSP+VIRFY++EI+CA++HLH+M
Sbjct: 79  LPSLMGTLESPQFLAWALPYCPGGDLNFLRYRQTDRSFSPAVIRFYVAEILCALDHLHSM 138

Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP---K 201
           GIAYRDLKPEN+L++ +GHVTLTDFDLSR L  K       +     P LP +  P   +
Sbjct: 139 GIAYRDLKPENVLVQNTGHVTLTDFDLSRKLNPKPKPNPNPVIVPSIP-LPNSNVPQPRR 197

Query: 202 RHRRILTRWLHALPENKTGLKKTK------SARVSPVSRRQQSFDNGERSNSFVGTEEYV 255
           +HRR L+RW+   P + T            SA+VSPVSRR+ SF +GERSNSFVGTEEYV
Sbjct: 198 KHRRNLSRWISFFPPDGTNNNNKNGLKKAKSAQVSPVSRRKPSFSSGERSNSFVGTEEYV 257

Query: 256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALT 315
           SPEVVRGDGHEFAVDWWALGIL YEMLYG TPF+G+NRKETFRNV+MK PEFVG+RTALT
Sbjct: 258 SPEVVRGDGHEFAVDWWALGILIYEMLYGKTPFKGRNRKETFRNVIMKPPEFVGKRTALT 317

Query: 316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREE--NDLTEK 373
           +LI+RLLEKDP KRLGY RGA EIKEH FF+GV+W+LLT+V+RPPFIPS ++   ++TE+
Sbjct: 318 NLIERLLEKDPTKRLGYTRGAAEIKEHEFFRGVQWELLTEVVRPPFIPSGDDGAGEMTER 377

Query: 374 -AMSGGGVDIREYFENLRAPP 393
            +    GV+IR+YF+NL++ P
Sbjct: 378 FSDRNCGVNIRDYFQNLKSSP 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2008331	404	UCN "UNICORN" [Arabidopsis tha	0.885	0.903	0.633	4.3e-125
TAIR|locus:2091881	408	UCNL "UNICORN-like" [Arabidops	0.873	0.882	0.641	1.7e-123
TAIR|locus:2090310	421	AGC2-1 [Arabidopsis thaliana (	0.810	0.793	0.465	8.7e-79
TAIR|locus:2123191	372	AT4G13000 [Arabidopsis thalian	0.735	0.814	0.469	5.7e-75
TAIR|locus:2087785	577	AGC1.5 "AGC kinase 1.5" [Arabi	0.825	0.589	0.426	3.1e-67
TAIR|locus:2098120	451	AT3G44610 [Arabidopsis thalian	0.844	0.771	0.421	4e-67
TAIR|locus:2055017	765	AT2G44830 [Arabidopsis thalian	0.868	0.467	0.414	9.4e-66
TAIR|locus:2160922	586	D6PKL2 "D6 protein kinase like	0.839	0.590	0.405	8.5e-65
UNIPROTKB|Q5I6E9	700	Adi3 "AvrPto-dependent Pto-int	0.856	0.504	0.409	3.7e-64
TAIR|locus:2049485	949	AT2G36350 [Arabidopsis thalian	0.871	0.378	0.408	5.3e-64

TAIR|locus:2008331 UCN "UNICORN" [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 242/382 (63%), Positives = 297/382 (77%)

Query:    14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
             +L+LD LK LK+LGKGA GTVFLVHD  +D +   PFALK+VDKS+  +     RRARWE
Sbjct:    16 NLNLDRLKVLKLLGKGATGTVFLVHDSVSDSSVSSPFALKLVDKSSASSL----RRARWE 71

Query:    74 IRVLSRLS-----HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
             I++L RLS     +PFLPKLL S E+ EF+AWA+PYC GGDLNVLR +QND VFS SVI+
Sbjct:    72 IQILRRLSDDTNPNPFLPKLLASSESSEFIAWALPYCSGGDLNVLRQRQNDGVFSSSVIK 131

Query:   129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
             FYL+EI+CA++HLH MGIAYRDLKPENIL+++SGHVTLTDFDLS +L K T  E   L++
Sbjct:   132 FYLAEIVCALDHLHTMGIAYRDLKPENILLQESGHVTLTDFDLSCSLNKPTRPEFYHLSD 191

Query:   189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
              + P  P  E+   H +   + L    + K   KKTKSARV+P++RR+ SF  GERSNSF
Sbjct:   192 PE-PD-PNPESNLSHNK---KSLRIFRQKK---KKTKSARVNPITRRRLSFSGGERSNSF 243

Query:   249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV 308
             VGT+EY+SPEV+RGDGH+FAVDWWALG+LTYEM+YG TPF+G+N+KETFRNVL+K PEF 
Sbjct:   244 VGTDEYISPEVIRGDGHDFAVDWWALGVLTYEMMYGETPFKGRNKKETFRNVLVKEPEFA 303

Query:   309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN 368
             G+ + LTDLI+RLL KDP KR G+ RGA EIKEH FFKGVRW+LLT+VLRPPFIP R++ 
Sbjct:   304 GKPSDLTDLIRRLLVKDPTKRFGFWRGAAEIKEHAFFKGVRWELLTEVLRPPFIPLRDDG 363

Query:   369 DLTEKAMSGGGVDIREYFENLR 390
             DLT K     G  I+EYFE L+
Sbjct:   364 DLTGKVTEESGFGIKEYFEKLK 385

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0004672 "protein kinase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0036290 "protein trans-autophosphorylation" evidence=IDA

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0080060 "integument development" evidence=IMP

TAIR|locus:2091881 UCNL "UNICORN-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 245/382 (64%), Positives = 295/382 (77%)

Query:    15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
             LDLD++KALKILGKGA GTVFL HD  +  ++  PFA+K+V KS+  +     RRARWEI
Sbjct:    16 LDLDSIKALKILGKGATGTVFLAHDVVSTSSSSSPFAVKLVPKSSASSL----RRARWEI 71

Query:    75 RVLSRLS-----HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
              VL RLS     +PFLP+LL S E+ E+ AWAVPYC GGDLNVL ++QND VFS SVIRF
Sbjct:    72 EVLRRLSVDSNQNPFLPRLLASFESPEYFAWAVPYCSGGDLNVLLHRQNDGVFSSSVIRF 131

Query:   130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN 189
             Y++EI+CA+EHLH MGIAYRDLKPENILI+QSGHVTLTDFDLSR+L       K+ L  +
Sbjct:   132 YVAEIVCALEHLHTMGIAYRDLKPENILIQQSGHVTLTDFDLSRSL-------KKPLRPH 184

Query:   190 KFPVLPVTENPKRHRRILTRWLHALPE-NKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
              +   P     ++  R  +R +    E NKTGLKKT+SARV+P++RR+ SF +GERSNSF
Sbjct:   185 FYQPDPELIIDRKKSRSFSRLISPTAEKNKTGLKKTRSARVNPINRRKTSFSSGERSNSF 244

Query:   249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV 308
             VGT+EYVSPEV+RGDGH+FAVDWWALG+LTYEM+YG TPF+GK++KETFRNVLMK PEF 
Sbjct:   245 VGTDEYVSPEVIRGDGHDFAVDWWALGVLTYEMMYGETPFKGKSKKETFRNVLMKEPEFA 304

Query:   309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN 368
             G+   LTDLI+RLL KDP +RLG  RGA EIKE  FF GVRWDLLT+VLRPPFIP R++ 
Sbjct:   305 GKPNDLTDLIRRLLVKDPNRRLGCHRGAAEIKELAFFAGVRWDLLTEVLRPPFIPLRDDG 364

Query:   369 DLTEKAMSGGGVDIREYFENLR 390
             +LT      GG DIRE+FE LR
Sbjct:   365 ELTV-----GGFDIREHFEKLR 381

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2090310 AGC2-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 168/361 (46%), Positives = 230/361 (63%)

Query:    14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK---HEAE--- 67
             +LD + L+ L +LG+GA G VFLV D  A        ALKV+ K  +  K    E+E   
Sbjct:    11 ALDFNRLEVLSLLGRGAKGVVFLVRDDDAKL-----LALKVILKEAIEKKKKGRESEDDE 65

Query:    68 -RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV 126
              +R  +E  VLSR  HP  P L G L TD+ + +A+ YCPG +LN LR  Q++ +FS  +
Sbjct:    66 YKRVSFEQGVLSRFDHPLFPSLHGVLATDKVIGYAIDYCPGQNLNSLRKMQSESMFSDEI 125

Query:   127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
             IRFY +E++ A+++LHN GI YRDLKP+N++I+++GH+ L DFDLS NL  +T     SL
Sbjct:   126 IRFYAAELVLALDYLHNQGIVYRDLKPDNVMIQENGHLMLIDFDLSTNLAPRTPQPSPSL 185

Query:   187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN 246
             +    P +      KR +R+  R+        +G+   +S  V   S    S  +GE+SN
Sbjct:   186 SKPS-PTM------KRKKRLF-RFTSFC---NSGISPQESISVHSSSTLAVSDSSGEKSN 234

Query:   247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE 306
             SFVGTEEYV+PEV+ GDGH+FAVDWW+LG++ YEMLYG TPFRG NRKETF  +L K P 
Sbjct:   235 SFVGTEEYVAPEVISGDGHDFAVDWWSLGVVLYEMLYGATPFRGSNRKETFYRILSKPPN 294

Query:   307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSRE 366
               G+ T+L DLI+RLLEKDP +R+       EIK H FF+GV W+ +  V RPP+IP+ +
Sbjct:   295 LTGETTSLRDLIRRLLEKDPSRRINVE----EIKGHDFFRGVDWEKVILVSRPPYIPAPD 350

Query:   367 E 367
             +
Sbjct:   351 D 351

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2123191 AT4G13000 [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 152/324 (46%), Positives = 218/324 (67%)

Query:    51 ALKVVDKSTLHAKHEAE--RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGG 108
             ALKV+ + ++ +K   +  +R  +E  VLSR  HP  P+L G + TD+ + +A+ YCPG 
Sbjct:    45 ALKVILRESIESKKAKDEYKRISFEQGVLSRFDHPLFPRLHGVISTDKVIGYAIDYCPGR 104

Query:   109 DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD 168
             DLN LR KQ++ +FS  +IRFY +E++ A+E+LHN GI YRDLKP+N++I+++GH+ L D
Sbjct:   105 DLNSLRKKQSEEMFSDEIIRFYAAELVIALEYLHNQGIVYRDLKPDNVMIQENGHLMLVD 164

Query:   169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSAR 228
             FDLS NL  +T   + S +++  P L      K+ R I            +GL  +  + 
Sbjct:   165 FDLSTNLPPRTP--QSSFSSS--PRLSTAT--KKERSIFAF---------SGLCNSGISP 209

Query:   229 VSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF 288
                VSR  +S  +GE+SNSFVGTEEYV+PEV+ G GH+FAVDWW+LG++ YEMLYG TPF
Sbjct:   210 DDSVSRSSESEFSGEKSNSFVGTEEYVAPEVITGSGHDFAVDWWSLGVVLYEMLYGATPF 269

Query:   289 RGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
             RG NRKETF  +L + P  VG+ T+L DL+++LLEKDP +R+  + G   IK H FFKG+
Sbjct:   270 RGSNRKETFLKILTEPPSLVGETTSLRDLVRKLLEKDPSRRIN-VEG---IKGHDFFKGL 325

Query:   349 RWDLLTDVLRPPFIPSREENDLTE 372
              WDL+  V RPP+IP+ E  ++++
Sbjct:   326 DWDLVLKVSRPPYIPAPENYEISK 349

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2087785 AGC1.5 "AGC kinase 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 152/356 (42%), Positives = 213/356 (59%)

Query:    15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
             + LDN + LK LG G +G+V+L   R  +      FA+KV+DK++L ++++   RA+ E 
Sbjct:   180 IGLDNFRLLKRLGYGDIGSVYLADLRGTNAV----FAMKVMDKASLASRNKL-LRAQTER 234

Query:    75 RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
              +LS L HPFLP L    ETD+F    + +C GG+L+ LR KQ  R F+    RFY SE+
Sbjct:   235 EILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSRRFTEEAARFYASEV 294

Query:   135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS-RNLVKKTAFEKQSLNNNKFPV 193
             + A+E+LH +G+ YRDLKPENIL+R  GH+ L+DFDLS R     T  +  S+ +    +
Sbjct:   295 LLALEYLHMLGVVYRDLKPENILVRDEGHIMLSDFDLSLRCTFNPTLVKSSSVCSGGGAI 354

Query:   194 L--PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE-RSNSFVG 250
             L      N   H       L  LP  KT   K+ S  +  +S  +   +  + RS SFVG
Sbjct:   355 LNEEFAVNGCMHPSAFLPRL--LPSKKTRKAKSDSG-LGGLSMPELMAEPTDVRSMSFVG 411

Query:   251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEF 307
             T EY++PE++RG+GH  AVDWW  GI  YE+L+GTTPF+G+  + T  NV+   +K P+ 
Sbjct:   412 THEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGQGNRATLHNVVGQPLKFPDT 471

Query:   308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
                 +A  DLI+ LL KDP +R+ Y RGA EIK+H FF+GV W L+     PP IP
Sbjct:   472 PHVSSAARDLIRGLLVKDPHRRIAYTRGATEIKQHPFFEGVNWALVRSAA-PPHIP 526

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2098120 AT3G44610 [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 156/370 (42%), Positives = 210/370 (56%)

Query:    14 SLDLDNLKALKILGKGAMGTVFLVHDRA----ADPTA-RCPF-ALKVVDKSTLHAKHEAE 67
             SL L +L+    LG G +G+VFL   ++     + TA + P  A KV+DK  L A    E
Sbjct:    63 SLSLSDLRFRLRLGSGDIGSVFLAEFKSLTAVTETTAVKLPLLAAKVMDKKEL-ASRSKE 121

Query:    68 RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI 127
              RA+ E  +L  L HPFLP L  ++++ ++L     +CPGGDL+VLR KQ  + F  S +
Sbjct:   122 GRAKTEREILESLDHPFLPTLYAAIDSPKWLCLLTEFCPGGDLHVLRQKQTHKRFHESAV 181

Query:   128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
             RFY+SE+I AIE+LH +GI YRDLKPEN+L+R  GH+ LTDFDLS    + T+  +  LN
Sbjct:   182 RFYVSEVIVAIEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDESTSTPQIVLN 241

Query:   188 NNKFP--VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE-- 243
              N  P       EN     R  T     +P            R+    ++    +NG   
Sbjct:   242 RNNLPNGSSDQNENQGMDHRQTTSSSCMIPNCIVPAVSCFHPRIRRRKKKTDHRNNGPEL 301

Query:   244 -------RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
                    RS SFVGT EY++PE+V G+GH  AVDWW LGI  +E+ YGTTPF+G + + T
Sbjct:   302 VAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFMFELFYGTTPFKGMDHELT 361

Query:   297 FRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
               N++ +  EF  + T   A  DLI +LL KDP +RLG   GA  +K H FF+GV W LL
Sbjct:   362 LANIVARALEFPKEPTIPSAAKDLISQLLAKDPSRRLGSSLGATAVKRHPFFQGVNWALL 421

Query:   354 TDVLRPPFIP 363
                 RPPF+P
Sbjct:   422 M-CTRPPFLP 430

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2055017 AT2G44830 [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 158/381 (41%), Positives = 212/381 (55%)

Query:    15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
             L + + K LK LG G +G+V+L    A     RC FA+KV+DK++L  + +  R A+ E 
Sbjct:   358 LGMSHFKLLKRLGCGDIGSVYL----AELSGTRCHFAVKVMDKASLEDRKKLNR-AQTER 412

Query:    75 RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
              +L  L HPFLP L    ETD F    + YCPGGDL+ LR +Q  + FS    RFY +E+
Sbjct:   413 DILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 472

Query:   135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS-RNLVKKT---AFEKQSLNNNK 190
             + A+E+LH +G+ YRDLKPEN+L+R  GH+ L+DFDLS R  V  T    F+        
Sbjct:   473 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTFDSDPSRRGA 532

Query:   191 FPVLPVTENPKRHRRI-----LTRWLHALPENKTGLKKTKSA--RVSPVSRRQQSFDNGE 243
             F V P    P     I     L R +      K   +KT++   +    S  +   +   
Sbjct:   533 FCVQPACMEPTSACIIQPSCFLPRSIFPNKNKKNKSRKTQADFFKSHSGSLPELVAEPNT 592

Query:   244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-- 301
             RS SFVGT EY++PE+++G+GH  AVDWW  GI  +E+LYG TPF+G   + T  NV+  
Sbjct:   593 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFVHELLYGKTPFKGSGNRATLFNVVGE 652

Query:   302 -MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPP 360
              +K PE      A  DLIQ LL KDP  RLG  RGA EIK+H FF+GV W L+     PP
Sbjct:   653 QLKFPESPATSYAGRDLIQALLVKDPKNRLGTKRGATEIKQHPFFEGVNWALIR-CSTPP 711

Query:   361 FIPSREENDLTEKAMSGGGVD 381
              +P + E   TE     G +D
Sbjct:   712 EVPRQME---TEPPPKYGPID 729

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2160922 D6PKL2 "D6 protein kinase like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 150/370 (40%), Positives = 211/370 (57%)

Query:    15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
             L L + + LK LG G +G+V+L          +C FA+KV+DK++L A  +   RA+ E 
Sbjct:   186 LGLSHFRLLKRLGCGDIGSVYLSELSGT----KCYFAMKVMDKTSL-ASRKKLLRAQTER 240

Query:    75 RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
              +L  L HPFLP L    ET++F    + +CPGGDL+ LR +Q  + FS   ++FY++E 
Sbjct:   241 EILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYIAES 300

Query:   135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN------LVKKTAFEKQSLNN 188
             + A+E+LH +GI YRDLKPEN+L+R+ GH+ L+DFDLS        LVK  A E   L  
Sbjct:   301 LLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCLVSPTLVKSAAIESDPLRK 360

Query:   189 NKFPVLPVTENPKRHRRILT-------RWLHALPENKTGLKKTKSA-RVSPVSRRQQSFD 240
             N + V P    P   +   T         L +    K    K  +A +V P+        
Sbjct:   361 NVYCVQPACIEPSCIQPSCTVPTTCFSPRLFSSKSKKDRKPKNDTANQVRPLPELVAE-P 419

Query:   241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
                RS SFVGT EY++PE+++G+GH  AVDWW  GI  YE+L+G TPF+G   ++T  NV
Sbjct:   420 TDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSGNRQTLFNV 479

Query:   301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVL 357
             +   ++ PE      A  DLI+ LL K+P +RLG+ RGA E+K+H FF+GV W L+    
Sbjct:   480 VGQPLRFPETPVVSFAARDLIRGLLMKEPQQRLGFKRGATEVKQHPFFEGVNWALIR-CA 538

Query:   358 RPPFIPSREE 367
              PP IP   E
Sbjct:   539 TPPEIPKPVE 548

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

UNIPROTKB|Q5I6E9 Adi3 "AvrPto-dependent Pto-interacting protein 3" [Solanum lycopersicum (taxid:4081)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 152/371 (40%), Positives = 205/371 (55%)

Query:    15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
             L + + K LK LG G +G+V+L          RC FA+KV+DK++L A  +   RA+ E 
Sbjct:   303 LGMSHFKLLKRLGCGDIGSVYLSELSGT----RCYFAMKVMDKASL-ASRKKLTRAQTER 357

Query:    75 RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
              +L  L HPFLP L    ETD F    + YCPGGDL+ LR +Q  + FS    RFY +E+
Sbjct:   358 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 417

Query:   135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS-RNLVKKTAFEKQSLNNNK--- 190
             + A+E+LH +G+ YRDLKPEN+L+R  GH+ L+DFDLS R  V  T     S + +K   
Sbjct:   418 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRISSDDPSKRGA 477

Query:   191 -FPVLPVTENPK----RHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
              F V P    P     +    L R      + KT   +  S   +       +     RS
Sbjct:   478 AFCVQPACIEPTTVCMQPACFLPRLFPQKSKKKTPKPRADSGFQANSMPELVAEPTSARS 537

Query:   246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---M 302
              SFVGT EY++PE+++G+GH  AVDWW  GI  +E+LYG TPF+G   + T  NV+   +
Sbjct:   538 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 597

Query:   303 KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFI 362
             K P+      A  DLI+ LL K+P  RLG  RGA EIK+H FF+GV W L+     PP +
Sbjct:   598 KFPDSPATSYASRDLIRGLLVKEPQNRLGVKRGATEIKQHPFFEGVNWALIR-CSTPPEV 656

Query:   363 PSREENDLTEK 373
             P   E D   K
Sbjct:   657 PRPVEPDYPAK 667

GO:0005515 "protein binding" evidence=IPI

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

TAIR|locus:2049485 AT2G36350 [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 5.3e-64, P = 5.3e-64
 Identities = 157/384 (40%), Positives = 214/384 (55%)

Query:    14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
             SL L +   LK LG G +GTV+L    A      C FA+KV+D   L A+ +   RA+ E
Sbjct:   553 SLGLRHFNLLKKLGCGDIGTVYL----AELVGTNCLFAIKVMDNEFL-ARRKKTPRAQAE 607

Query:    74 IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
               +L  L HPFLP L     +D      + YCPGGDL+VLR KQ  R FS    RFY++E
Sbjct:   608 RAILKMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLSRCFSEPATRFYVAE 667

Query:   134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN------LVKKTAFEKQSLN 187
             I+ A+E+LH +G+ YRDLKPENIL+R+ GH+ LTDFDLS        L++ T+  ++   
Sbjct:   668 ILLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLRSTSPPEKDPA 727

Query:   188 NNKFP------VLPVTENPK-RHRRILTRWLHALPENKTGLKKTKSARVSPVSRR--QQS 238
                 P      + P+   P  R      R L     N+   K  +   ++   R   Q  
Sbjct:   728 RMSGPYSTSNCIQPLCIEPSCRVPCFSPRLLSTQARNQKPRKPKRPDLLTQQFRSLPQLV 787

Query:   239 FDNGE-RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF 297
              +  E RSNSFVGT EY++PE+++G+GH  AVDWW  G+L YE+LYG TPF+G + +ET 
Sbjct:   788 AEPTEARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVLLYELLYGKTPFKGYDNEETL 847

Query:   298 RNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLT 354
              NV+   +K P+         +LI+RLL KDP  RLG  +GA EIK H FF+G+ W L+ 
Sbjct:   848 SNVVYQNLKFPDSPLVSFQAKELIRRLLVKDPESRLGSEKGAAEIKRHPFFEGLNWALIR 907

Query:   355 DVLRPPFIPSREENDLTEKAMSGG 378
               + PP +P   +N  TE     G
Sbjct:   908 CAI-PPELPDIYDNGATEATSPEG 930

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-144
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	1e-68
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-67
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	7e-66
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	1e-56
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	1e-52
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-48
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	5e-46
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	6e-45
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	8e-45
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-43
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-40
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-40
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	2e-39
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	4e-38
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	5e-37
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	4e-36
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-35
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	3e-35
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	5e-35
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-34
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	4e-34
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	8e-34
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	5e-33
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-31
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	4e-30
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	1e-29
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	1e-29
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	1e-29
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-29
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	5e-29
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-28
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-28
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-28
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	1e-28
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	9e-28
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-27
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	1e-27
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	2e-27
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-27
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	3e-27
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	6e-27
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	7e-27
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	1e-26
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-26
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	2e-26
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	3e-26
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-26
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	5e-26
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-25
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	1e-25
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-25
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	3e-25
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	6e-25
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	7e-25
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	8e-25
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-24
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	3e-24
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-24
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	6e-24
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	6e-24
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	7e-24
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	9e-24
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	2e-23
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	2e-23
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	5e-23
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	6e-23
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-22
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	4e-22
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	6e-22
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	6e-22
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	7e-22
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	7e-22
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	7e-22
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	8e-22
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	3e-21
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	5e-21
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	6e-21
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	8e-21
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-20
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-20
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-20
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	2e-20
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-20
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-20
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	3e-20
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	4e-20
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	4e-20
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	5e-20
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	5e-20
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	6e-20
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	6e-20
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-20
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	6e-20
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	6e-20
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	1e-19
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	2e-19
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	3e-19
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-19
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-19
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	6e-19
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	7e-19
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	7e-19
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-18
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-18
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-18
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-18
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	3e-18
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	4e-18
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	6e-18
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	9e-18
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-17
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	2e-17
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	2e-17
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-17
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	3e-17
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	4e-17
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	5e-17
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	6e-17
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	7e-17
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	7e-17
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	8e-17
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	1e-16
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	1e-16
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	2e-16
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	2e-16
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	3e-16
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	3e-16
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	4e-16
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	5e-16
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	1e-15
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-15
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-15
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	1e-15
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-15
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	2e-15
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	2e-15
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-15
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-15
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	4e-15
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-15
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	6e-15
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	6e-15
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	8e-15
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-14
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-14
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-14
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	3e-14
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-14
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-14
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	4e-14
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	4e-14
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	4e-14
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-14
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	6e-14
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	6e-14
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	8e-14
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	9e-14
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-13
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	2e-13
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-13
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	4e-13
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	4e-13
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-12
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	1e-11
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	1e-11
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	1e-11
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-11
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	2e-11
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	3e-11
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	3e-11
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	5e-11
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	9e-11
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	1e-10
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	1e-10
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	1e-10
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-10
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-10
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	1e-10
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-10
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-10
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	5e-10
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	6e-10
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	6e-10
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	7e-10
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-09
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-09
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-09
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-09
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-09
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	2e-09
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-09
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	3e-09
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	4e-09
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	4e-09
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	4e-09
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	6e-09
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	7e-09
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	8e-09
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	8e-09
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	9e-09
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	9e-09
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	9e-09
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-08
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	1e-08
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-08
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	3e-08
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	4e-08
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	5e-08
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	5e-08
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	6e-08
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	6e-08
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	6e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	7e-08
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	7e-08
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	8e-08
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	8e-08
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	1e-07
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-07
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	1e-07
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	1e-07
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-07
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	1e-07
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	2e-07
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	2e-07
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	2e-07
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	3e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	4e-07
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	4e-07
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	4e-07
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	4e-07
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	5e-07
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	6e-07
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	8e-07
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	9e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-06
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-06
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	1e-06
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	1e-06
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	1e-06
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-06
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-06
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	1e-06
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-06
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-06
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	2e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	3e-06
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	3e-06
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	3e-06
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	4e-06
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	4e-06
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	4e-06
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	4e-06
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	4e-06
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	5e-06
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	5e-06
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	5e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	5e-06
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	6e-06
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	6e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	7e-06
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	7e-06
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	8e-06
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	8e-06
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	1e-05
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	1e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-05
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	1e-05
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	1e-05
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	1e-05
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-05
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-05
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-05
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	2e-05
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-05
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	2e-05
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-05
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-05
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	3e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	3e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-05
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	3e-05
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-05
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	4e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	4e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	4e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	5e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	5e-05
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	5e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	6e-05
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	7e-05
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	7e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	8e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	9e-05
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	1e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	1e-04
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	1e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	1e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	1e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-04
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	2e-04
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	2e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	2e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-04
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-04
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	2e-04
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	2e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	3e-04
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	3e-04
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	3e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	3e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-04
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	4e-04
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	4e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	4e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	4e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	5e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	6e-04
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	6e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	7e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	7e-04
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	7e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	8e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.001
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	0.001
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.001
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.001
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.001
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.001
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.001
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.001
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.001
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.002
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.002
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.002
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	0.002
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.002
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.002
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	0.003
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.003
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.004
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.004

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score =  411 bits (1058), Expect = e-144
 Identities = 150/355 (42%), Positives = 204/355 (57%), Gaps = 43/355 (12%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
            + K +K+LGKG +G VFLV  +         FALKV+DK  +  +++  +R   E  +L
Sbjct: 1   KHFKKIKLLGKGDVGRVFLVRLKGTGK----LFALKVLDKKEMIKRNKV-KRVLTEQEIL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + L HPFLP L  S +T+ +L   + YCPGG+L  L  +Q  +  S  V RFY +E++ A
Sbjct: 56  ATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLA 115

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           +E+LH +GI YRDLKPENIL+ +SGH+ L+DFDLS+    +     ++L           
Sbjct: 116 LEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKAL----------- 164

Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP 257
                                   K ++ + V+ +     S +   RSNSFVGTEEY++P
Sbjct: 165 -----------------------RKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAP 201

Query: 258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF---VGQRTAL 314
           EV+ GDGH  AVDWW LGIL YEMLYGTTPF+G NR ETF N+L K   F       ++ 
Sbjct: 202 EVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSA 261

Query: 315 TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEND 369
            DLI++LL KDP KRLG  RGA EIK+H FF+GV W L+     PP IP  ++  
Sbjct: 262 RDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWALIRHT-TPPIIPRPDDGI 315

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score =  220 bits (563), Expect = 1e-68
 Identities = 114/349 (32%), Positives = 173/349 (49%), Gaps = 57/349 (16%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRVLSRLS 81
           +K++G+GA G V+LV D+         +A+KV+ KS +  +   A  RA  E  +L+   
Sbjct: 6   IKVIGRGAFGEVWLVRDKDT----GQVYAMKVLRKSDMIKRNQIAHVRA--ERDILADAD 59

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
            P++ KL  S + +E L   + Y PGGDL  L  +++  VF     RFY++E++ A++ +
Sbjct: 60  SPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKD--VFPEETARFYIAELVLALDSV 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL--VKKTAFEKQSLNNNKFPVLPVTEN 199
           H +G  +RD+KP+NILI   GH+ L DF L + +   K   +     +N  F      +N
Sbjct: 118 HKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFR-----DN 172

Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
               RR   +                                  R+NS VGT +Y++PEV
Sbjct: 173 VLVRRRDHKQRRV-------------------------------RANSTVGTPDYIAPEV 201

Query: 260 VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTAL 314
           +RG  +    DWW+LG++ YEMLYG  PF     +ET+  ++     ++ P         
Sbjct: 202 LRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEA 261

Query: 315 TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
            DLI RLL  DP  RLG      EIK H FFKG+ W+ L +  +PPF+P
Sbjct: 262 IDLICRLL-CDPEDRLGSFE---EIKSHPFFKGIDWENLRE-TKPPFVP 305

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  215 bits (551), Expect = 1e-67
 Identities = 106/327 (32%), Positives = 155/327 (47%), Gaps = 58/327 (17%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           KI+G+G+  TV L  ++  +      +A+K++DK  L  K +  +  + E  VL+RL+ H
Sbjct: 7   KIIGEGSFSTVVLAKEKETNK----EYAIKILDKRQL-IKEKKVKYVKIEKEVLTRLNGH 61

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P + KL  + + +E L + + Y P G+L   +R   +         RFY +EI+ A+E+L
Sbjct: 62  PGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGS---LDEKCTRFYAAEILLALEYL 118

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPK 201
           H+ GI +RDLKPENIL+ +  H+ +TDF         TA                     
Sbjct: 119 HSKGIIHRDLKPENILLDKDMHIKITDFG--------TA--------------------- 149

Query: 202 RHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR 261
              ++L       P +     K  +      +   Q   N  R  SFVGT EYVSPE++ 
Sbjct: 150 ---KVLD------PNSSPESNKGDA-----TNIDSQIEKNRRRFASFVGTAEYVSPELLN 195

Query: 262 GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDLI 318
                 + D WALG + Y+ML G  PFRG N   TF+ +L      P          DLI
Sbjct: 196 EKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAK--DLI 253

Query: 319 QRLLEKDPVKRLGYLRGACEIKEHVFF 345
           ++LL  DP  RLG   G  E+K H FF
Sbjct: 254 EKLLVLDPQDRLGVNEGYDELKAHPFF 280

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  210 bits (537), Expect = 7e-66
 Identities = 113/329 (34%), Positives = 159/329 (48%), Gaps = 68/329 (20%)

Query: 26  LGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           + KGA G VFL       D      +A+KV+ K+ +  K++ ++    E  +LS+   P+
Sbjct: 1   ISKGAYGRVFLAKKKSTGDI-----YAIKVIKKADMIRKNQVDQ-VLTERDILSQAQSPY 54

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
           + KL  S +  + L   + Y PGGDL  L   +N       V R Y++EI+ A+E+LH+ 
Sbjct: 55  VVKLYYSFQGKKNLYLVMEYLPGGDLASLL--ENVGSLDEDVARIYIAEIVLALEYLHSN 112

Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHR 204
           GI +RDLKP+NILI  +GH+ LTDF LS     K    ++ +N N         + K  +
Sbjct: 113 GIIHRDLKPDNILIDSNGHLKLTDFGLS-----KVGLVRRQINLND--------DEKEDK 159

Query: 205 RILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG 264
           RI                                          VGT +Y++PEV+ G G
Sbjct: 160 RI------------------------------------------VGTPDYIAPEVILGQG 177

Query: 265 HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRL 321
           H   VDWW+LG + YE L G  PF G+  +E F+N+L      PE V       DLI +L
Sbjct: 178 HSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKL 237

Query: 322 LEKDPVKRLGYLRGACEIKEHVFFKGVRW 350
           L  DP KRLG  +   EIK H FFKG+ W
Sbjct: 238 LVPDPEKRLGA-KSIEEIKNHPFFKGIDW 265

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  189 bits (483), Expect = 1e-56
 Identities = 112/354 (31%), Positives = 177/354 (50%), Gaps = 46/354 (12%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ +++K++G+GA G V LV  +         +A+K + KS +  K +     R E  +L
Sbjct: 1   DDFESIKVIGRGAFGEVRLVQKKDTGHI----YAMKKLRKSEMLEKEQVAH-VRAERDIL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +   +P++ KL  S + + +L   + Y PGGD+  L  K++   F+    RFY++E I A
Sbjct: 56  AEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKKD--TFTEEETRFYIAETILA 113

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           I+ +H +G  +RD+KP+N+L+   GH+ L+DF L       T  +               
Sbjct: 114 IDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLC------TGLK--------------- 152

Query: 198 ENPKRHRRILTR-WLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER--SNSFVGTEEY 254
              K HR    R   HALP N         +      R+ +++    R  + S VGT +Y
Sbjct: 153 ---KSHRTEFYRILSHALPSNFLDFISKPMSS----KRKAETWKRNRRALAYSTVGTPDY 205

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVG 309
           ++PEV    G+    DWW+LG++ YEML G  PF   N +ET+R ++     ++ P+ V 
Sbjct: 206 IAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPDEVP 265

Query: 310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
                 DLI+RL   +  +RLG   G  EIK H FFKGV W+ + +    P IP
Sbjct: 266 LSPEAKDLIKRLC-CEAERRLGN-NGVNEIKSHPFFKGVDWEHIRER-PAPIIP 316

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  179 bits (456), Expect = 1e-52
 Identities = 116/360 (32%), Positives = 179/360 (49%), Gaps = 49/360 (13%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-AERRARWEIRV 76
           ++   +K++GKGA G V LV  +         +A+K + KS +  K + A  +A  E  V
Sbjct: 1   EDFHTVKVIGKGAFGEVRLVQKKDTGKI----YAMKTLLKSEMFKKDQLAHVKA--ERDV 54

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L+    P++  L  S +  ++L   + + PGGDL  +  K +   FS  V RFY++E + 
Sbjct: 55  LAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKYD--TFSEDVTRFYMAECVL 112

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           AIE +H +G  +RD+KP+NILI + GH+ L+DF LS      T F KQ  +         
Sbjct: 113 AIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLS------TGFHKQHDSAY------- 159

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD--NGERSN------SF 248
                 ++++L         NK  +    S  V  ++    S D     + N      S 
Sbjct: 160 ------YQKLLQG-----KSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYST 208

Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MK 303
           VGT +Y++PE+    G+    DWW+LG + +E L G  PF  +N  ET+R ++     + 
Sbjct: 209 VGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLY 268

Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
            P+ +       DLI+RL+  +   RLG   GA EIK H FF+GV WD +  + R PFIP
Sbjct: 269 FPDDIHLSVEAEDLIRRLI-TNAENRLGR-GGAHEIKSHPFFRGVDWDTIRQI-RAPFIP 325

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score =  167 bits (424), Expect = 2e-48
 Identities = 105/358 (29%), Positives = 165/358 (46%), Gaps = 85/358 (23%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           ++G+G  G V +V ++A        +A+KV+ KS L A+ E       E  +LS  + P+
Sbjct: 8   LVGRGHFGEVQVVREKATGDI----YAMKVMKKSVLLAQ-ETVSFFEEERDILSISNSPW 62

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
           +P+L  + +  + L   + Y PGGDL  L  +  D+ F   + +FYL+E++ AI  +H M
Sbjct: 63  IPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQ-FDEDMAQFYLAELVLAIHSVHQM 121

Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHR 204
           G  +RD+KPEN+LI ++GH+ L DF  +  L         + N      LPV        
Sbjct: 122 GYVHRDIKPENVLIDRTGHIKLADFGSAARL---------TANKMVNSKLPV-------- 164

Query: 205 RILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV---VR 261
                                                        GT +Y++PEV   + 
Sbjct: 165 ---------------------------------------------GTPDYIAPEVLTTMN 179

Query: 262 GDG---HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTA 313
           GDG   +    DWW+LG++ YEM+YG +PF      +T+ N++     +K PE     + 
Sbjct: 180 GDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSD 239

Query: 314 LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLT 371
             DLIQ LL     +RLGY    C    H FF  + W+ + + L PPF+P+ + +D T
Sbjct: 240 FLDLIQSLL-CGQKERLGYEGLCC----HPFFSKIDWNNIRNSL-PPFVPTLKSDDDT 291

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score =  162 bits (411), Expect = 5e-46
 Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 36/349 (10%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
             +K +G GA G V LV  R  D  A   +A+K + K+ +  +++A    + E  +L+  
Sbjct: 4   VKIKTIGIGAFGEVCLV--RKVDTNAL--YAMKTLRKADVLMRNQAAH-VKAERDILAEA 58

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            + ++ KL  S +  + L + + Y PGGD+  L  +    +F   + RFY++E+ CAIE 
Sbjct: 59  DNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRLG--IFEEDLARFYIAELTCAIES 116

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           +H MG  +RD+KP+NILI + GH+ LTDF L       T F  +  +++K+         
Sbjct: 117 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC------TGF--RWTHDSKY------YQK 162

Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
             H R  +       E      +    R+ P+ RR++       ++S VGT  Y++PEV+
Sbjct: 163 GDHHRQDS---MEPSEE---WSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVL 216

Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET------FRNVLMKTPEFVGQRTAL 314
              G+    DWW++G++ YEML G  PF      ET      +   L    +    R A 
Sbjct: 217 LRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSREA- 275

Query: 315 TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
           +DLI RL       RLG   GA EIK H FFKG+ +  L    + P+IP
Sbjct: 276 SDLILRLC-CGAEDRLGK-NGADEIKAHPFFKGIDFASLIRRQKAPYIP 322

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score =  157 bits (399), Expect = 6e-45
 Identities = 113/348 (32%), Positives = 156/348 (44%), Gaps = 81/348 (23%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-----AERRARWEIRVLS 78
           K++GKG+ G V L   R +D +    +A+KV+ K T+  K E     AER       +L 
Sbjct: 1   KVIGKGSFGKVLLA-KRKSDGSF---YAVKVLQKKTILKKKEQNHIMAERNV-----LLK 51

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
            L HPFL  L  S +T E L + + Y  GG+L    + Q +R F     RFY +E+  AI
Sbjct: 52  NLKHPFLVGLHYSFQTAEKLYFVLDYVNGGEL--FFHLQRERCFLEPRARFYAAEVASAI 109

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTE 198
            +LH++ I YRDLKPENIL+   GHV LTDF L +  V+                     
Sbjct: 110 GYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVE--------------------- 148

Query: 199 NPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE 258
                           PE  T         ++P   R++ +D                  
Sbjct: 149 ----------------PEETTSTFCGTPEYLAPEVLRKEPYDR----------------- 175

Query: 259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT-ALTDL 317
                     VDWW LG + YEMLYG  PF  ++  + + N+L K  +  G +T A  DL
Sbjct: 176 ---------TVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPGGKTVAACDL 226

Query: 318 IQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
           +  LL KD  +RLG      EIK HVFF  + W DL    + PP+ P+
Sbjct: 227 LVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDDLYHKRITPPYNPN 274

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  155 bits (394), Expect = 8e-45
 Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 7/156 (4%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LGKG+ G V LV  +         +A+KV+ K  +  K +       E  +LSR++HPF+
Sbjct: 1   LGKGSFGKVLLVRKKDTGKL----YAMKVLKKKKII-KRKEVEHTLTERNILSRINHPFI 55

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KL  + +T+E L   + Y PGG+L    +   +  FS    RFY +EI+ A+E+LH++G
Sbjct: 56  VKLHYAFQTEEKLYLVLEYAPGGEL--FSHLSKEGRFSEERARFYAAEIVLALEYLHSLG 113

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
           I YRDLKPENIL+   GH+ LTDF L++ L  + + 
Sbjct: 114 IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR 149

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  151 bits (383), Expect = 4e-43
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 9/153 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ LG+G+ G V+L  D+    T +   A+KV+ K  +    E   R   EI++L +L H
Sbjct: 4   LEKLGEGSFGKVYLARDK---KTGK-LVAIKVIKKKKIKKDRERILR---EIKILKKLKH 56

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + +L    E ++ L   + YC GGDL      +     S    RFYL +I+ A+E+LH
Sbjct: 57  PNIVRLYDVFEDEDKLYLVMEYCEGGDL--FDLLKKRGRLSEDEARFYLRQILSALEYLH 114

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + GI +RDLKPENIL+ + GHV L DF L+R L
Sbjct: 115 SKGIVHRDLKPENILLDEDGHVKLADFGLARQL 147

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  144 bits (366), Expect = 1e-40
 Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 8/156 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ LG G+ GTV+    +          A+K++ K     K + ++ AR EIR+L RLSH
Sbjct: 4   LRKLGSGSFGTVYKAKHKGT----GKIVAVKILKKR--SEKSKKDQTARREIRILRRLSH 57

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + +L+ + E  + L   + YC GGDL    Y       S    +    +I+  +E+LH
Sbjct: 58  PNIVRLIDAFEDKDHLYLVMEYCEGGDLF--DYLSRGGPLSEDEAKKIALQILRGLEYLH 115

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           + GI +RDLKPENIL+ ++G V + DF L++ L+K 
Sbjct: 116 SNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKS 151

Length = 260

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  143 bits (362), Expect = 3e-40
 Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 6/109 (5%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
             G R+N+F GT EY++PEV+ G G+  AVDWW+LG+L YEML G  PF  ++RKE +  
Sbjct: 145 SEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEK 204

Query: 300 VL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
           +L   ++ PEF+       DLI  LL+KDP KRLG   GA EIK H FF
Sbjct: 205 ILKDPLRFPEFLSPEAR--DLISGLLQKDPTKRLGSG-GAEEIKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score =  144 bits (364), Expect = 2e-39
 Identities = 107/354 (30%), Positives = 166/354 (46%), Gaps = 50/354 (14%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ ++LK++G+GA G V LV  +         +A+K++ K+ +  K +     R E  +L
Sbjct: 1   DDFESLKVIGRGAFGEVRLVQKKDTGHI----YAMKILRKADMLEKEQVAH-IRAERDIL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
                 ++ K+  S +    L   + + PGGD+  L  K++    S    +FY++E + A
Sbjct: 56  VEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKD--TLSEEATQFYIAETVLA 113

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           I+ +H +G  +RD+KP+N+L+   GHV L+DF L   L                      
Sbjct: 114 IDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL---------------------- 151

Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV---SRRQQSFDNGERSNSFVGTEEY 254
              K HR    R L   P +    +   S R +     +RRQ ++       S VGT +Y
Sbjct: 152 --KKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAY-------STVGTPDY 202

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVG 309
           ++PEV    G+    DWW+LG++ YEML G  PF  +  +ET+R V+     +  P  V 
Sbjct: 203 IAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFPPEVP 262

Query: 310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
                 DLI R    D   R+G   G  EIK H FF+GV W  + +  RP  IP
Sbjct: 263 ISEKAKDLILRFC-TDSENRIGS-NGVEEIKSHPFFEGVDWGHIRE--RPAAIP 312

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score =  140 bits (355), Expect = 4e-38
 Identities = 106/354 (29%), Positives = 170/354 (48%), Gaps = 50/354 (14%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ ++LK++G+GA G V LV  +         +A+K++ K+ +  K E     R E  +L
Sbjct: 1   EDFESLKVIGRGAFGEVRLVQKKDTGHV----YAMKILRKADMLEK-EQVGHIRAERDIL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
                 ++ K+  S +    L   + + PGGD+  L  K++    +    +FY++E + A
Sbjct: 56  VEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKD--TLTEEETQFYIAETVLA 113

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           I+ +H +G  +RD+KP+N+L+   GHV L+DF L   L                      
Sbjct: 114 IDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGL---------------------- 151

Query: 198 ENPKRHRRILTRWL-HALPENKT--GLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
              K HR    R L H+LP + T   +   + A     +RRQ +F       S VGT +Y
Sbjct: 152 --KKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAF-------STVGTPDY 202

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVG 309
           ++PEV    G+    DWW+LG++ YEML G  PF  +  +ET++ V+     +  P  V 
Sbjct: 203 IAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPPEVP 262

Query: 310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
                 DLI R   +    R+G   G  EIK + FF+GV W+ + +  RP  IP
Sbjct: 263 ISEKAKDLILRFCCEWE-HRIG-APGVEEIKTNPFFEGVDWEHIRE--RPAAIP 312

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  136 bits (344), Expect = 5e-37
 Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 7/162 (4%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ + +K LG G+ G V LV  + +       +ALK++ K+ +    + E     E R+L
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGK----YYALKILSKAKIVKLKQVEHVLN-EKRIL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
             + HPFL  L GS + D  L   + Y PGG+L    + +    F   V RFY ++++ A
Sbjct: 56  QSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGEL--FSHLRKSGRFPEPVARFYAAQVVLA 113

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +E+LH++ I YRDLKPEN+L+   G++ +TDF  ++ +  +T
Sbjct: 114 LEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRT 155

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score =  133 bits (336), Expect = 4e-36
 Identities = 96/349 (27%), Positives = 149/349 (42%), Gaps = 81/349 (23%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LGKG  G V     RA        +A K ++K  L  K +    A  E R+L+++   F+
Sbjct: 1   LGKGGFGEVSACQMRATGKL----YACKKLNKKRLK-KRKGYEGAMVEKRILAKVHSRFI 55

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
             L  + +T   L   +    GGDL  ++    + +  F      FY ++II  +EHLH 
Sbjct: 56  VSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ 115

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
             I YRDLKPEN+L+   G+V ++D  L+  L                            
Sbjct: 116 RRIIYRDLKPENVLLDNDGNVRISDLGLAVEL---------------------------- 147

Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
                         K G  KTK                      + GT  +++PE+++G+
Sbjct: 148 --------------KDGQSKTK---------------------GYAGTPGFMAPELLQGE 172

Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETFRNVL---MKTPEFVGQRTALTD 316
            ++F+VD++ALG+  YEM+    PFR +      KE  + +L   +  P+      A   
Sbjct: 173 EYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSP--ASKS 230

Query: 317 LIQRLLEKDPVKRLGYLRGAC-EIKEHVFFKGVRW-DLLTDVLRPPFIP 363
             + LL KDP KRLG+  G C  ++ H  F+ + W  L   +L PPF+P
Sbjct: 231 FCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQLEAGMLPPPFVP 279

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  131 bits (332), Expect = 2e-35
 Identities = 64/132 (48%), Positives = 83/132 (62%), Gaps = 9/132 (6%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFR---GKN-R 293
           +  ER+ SF GT EY++PEV+RG   GH+ AVDWW+LG+LT+E+L G +PF     +N +
Sbjct: 158 EEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQ 217

Query: 294 KETFRNVLMKTPEFVGQRTALT-DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD- 351
            E  R +L   P F    +A   D IQ+LLEKDP KRLG   GA EIK H FF+G+ WD 
Sbjct: 218 SEISRRILKSKPPFPKTMSAEARDFIQKLLEKDPKKRLGA-NGADEIKNHPFFQGIDWDD 276

Query: 352 LLTDVLRPPFIP 363
           L    +  PF P
Sbjct: 277 LAAKRIPAPFKP 288

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score =  133 bits (336), Expect = 3e-35
 Identities = 108/351 (30%), Positives = 175/351 (49%), Gaps = 38/351 (10%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +K LG GA G V L   R  D  A   +A+K + K  +  +++     + E  +L+   +
Sbjct: 6   IKTLGIGAFGEVCLA--RKVDTKAL--YAMKTLRKKDVLLRNQVAH-VKAERDILAEADN 60

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
            ++ +L  S +  + L + + Y PGGD+  L  +    +F   + RFY++E+ CA+E +H
Sbjct: 61  EWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMG--IFPEDLARFYIAELTCAVESVH 118

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
            MG  +RD+KP+NILI + GH+ LTDF L       T F  +  +++K+      ++ ++
Sbjct: 119 KMGFIHRDIKPDNILIDRDGHIKLTDFGLC------TGF--RWTHDSKY--YQSGDHVRQ 168

Query: 203 HRRILT-RWLHALPEN-KTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
                +  W    P N + G       R+ P+ RR         ++S VGT  Y++PEV+
Sbjct: 169 DSMDFSNEW--GDPANCRCG------DRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVL 220

Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALT 315
              G+    DWW++G++ YEML G  PF  +   ET   V+     +  P         +
Sbjct: 221 LRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEAS 280

Query: 316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLR--PPFIPS 364
           DLI +L  + P  RLG   GA EIK H FFK +  D  +D+ +   P+IP 
Sbjct: 281 DLIIKLC-RGPEDRLGK-NGADEIKAHPFFKTI--DFSSDLRQQSAPYIPK 327

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  130 bits (329), Expect = 5e-35
 Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 21/169 (12%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD-------KSTLHAKHEAERRA 70
           D+L+ +K +G G  G V LV DR     +   +ALKV+        K   H  +E     
Sbjct: 1   DDLERIKTVGTGTFGRVHLVRDR----ISEHYYALKVMAIPEVIRLKQEQHVHNEK---- 52

Query: 71  RWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
               RVL  +SHPF+ +L  +     FL   + Y PGG+L    Y +N   FS S   FY
Sbjct: 53  ----RVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGEL--FSYLRNSGRFSNSTGLFY 106

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
            SEI+CA+E+LH+  I YRDLKPENIL+ + GH+ LTDF  ++ L  +T
Sbjct: 107 ASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT 155

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  126 bits (319), Expect = 2e-34
 Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 9/151 (5%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG+G  GTV+L  D+          A+K++ K               EI +L +L+HP +
Sbjct: 1   LGEGGFGTVYLARDKKTG----KKVAIKIIKKED---SSSLLEELLREIEILKKLNHPNI 53

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KL G  E +  L   + YC GG L  L  K+N+   S   I   L +I+  +E+LH+ G
Sbjct: 54  VKLYGVFEDENHLYLVMEYCEGGSLKDL-LKENEGKLSEDEILRILLQILEGLEYLHSNG 112

Query: 146 IAYRDLKPENILI-RQSGHVTLTDFDLSRNL 175
           I +RDLKPENIL+   +G V L DF LS+ L
Sbjct: 113 IIHRDLKPENILLDSDNGKVKLADFGLSKLL 143

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  128 bits (323), Expect = 4e-34
 Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 7/126 (5%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL- 301
            R+ +  GT EY++PE++   G+  AVDWWALGIL YEML G  PF   N  + +  +L 
Sbjct: 153 GRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILE 212

Query: 302 --MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWD-LLTDVL 357
             ++ P F        DLI+ LL+ D  KRLG L+ G  +IK H +F G+ W  LL   +
Sbjct: 213 GKVRFPSFFSPD--AKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIALLQRKI 270

Query: 358 RPPFIP 363
             PFIP
Sbjct: 271 EAPFIP 276

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  129 bits (325), Expect = 8e-34
 Identities = 93/375 (24%), Positives = 142/375 (37%), Gaps = 84/375 (22%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           + + L+ LG+G+ G V+L  DR          ALKV+ K  L +K +   R   EI++L+
Sbjct: 1   SYRILRKLGEGSFGEVYLARDRK-------LVALKVLAKK-LESKSKEVERFLREIQILA 52

Query: 79  RLSHP-FLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIIC 136
            L+HP  + KL    + +  L   + Y  GG L ++L+        S S   F L++I+ 
Sbjct: 53  SLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILS 112

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+ GI +RD+KPENIL+           D    +VK   F               
Sbjct: 113 ALEYLHSKGIIHRDIKPENILL-----------DRDGRVVKLIDF--------------- 146

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                                  GL K        +     +       ++ VGT  Y++
Sbjct: 147 -----------------------GLAKL-------LPDPGSTSSIPALPSTSVGTPGYMA 176

Query: 257 PEVVRGDGHE---FAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQR-- 311
           PEV+ G        + D W+LGI  YE+L G  PF G+         L    E       
Sbjct: 177 PEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLA 236

Query: 312 ------------TALTDLIQRLLEKDPVKRLGYLRGAC-EIKEHVFFKGVRWDLLTDVLR 358
                        A +DL+++LL KDP  RL        ++  H+  K      L     
Sbjct: 237 SPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLLKPDD 296

Query: 359 PPFIPSREENDLTEK 373
              +       L   
Sbjct: 297 SAPLRLSLPPSLEAL 311

Length = 384

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  125 bits (317), Expect = 5e-33
 Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 3/126 (2%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
            G  +++F GT +Y++PE++    +  AVDWWALG+L YEML G +PF G +  E F+++
Sbjct: 149 GGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSI 208

Query: 301 LMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWDLLTDV-L 357
           L     +          +++  L K+P KRLG L  G  +IK H FF+ + WD L    +
Sbjct: 209 LEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKLERKEI 268

Query: 358 RPPFIP 363
           +PPF P
Sbjct: 269 KPPFKP 274

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score =  120 bits (302), Expect = 2e-31
 Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 9/154 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+++GKGA G V +V  R      +  FA+K ++K     K    R    E R+L  L+H
Sbjct: 5   LRVIGKGAFGKVCIVQKR----DTKKMFAMKYMNKQKCVEKGSV-RNVLNERRILQELNH 59

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYK-QNDRVFSPSVIRFYLSEIICAIEHL 141
           PFL  L  S + +E +   V    GGDL   RY       FS   ++F++ EI+ A+E+L
Sbjct: 60  PFLVNLWYSFQDEENMYLVVDLLLGGDL---RYHLSQKVKFSEEQVKFWICEIVLALEYL 116

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           H+ GI +RD+KP+NIL+ + GHV +TDF+++  +
Sbjct: 117 HSKGIIHRDIKPDNILLDEQGHVHITDFNIATKV 150

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score =  119 bits (299), Expect = 4e-30
 Identities = 104/349 (29%), Positives = 165/349 (47%), Gaps = 34/349 (9%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +K LG GA G V L      D  A   +A+K + K  +  +++     + E  +L+   +
Sbjct: 6   IKTLGIGAFGEVCLA--CKVDTHAL--YAMKTLRKKDVLNRNQVAH-VKAERDILAEADN 60

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
            ++ KL  S +  + L + + Y PGGD+  L  +    VF   + RFY++E+  AIE +H
Sbjct: 61  EWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRME--VFPEVLARFYIAELTLAIESVH 118

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
            MG  +RD+KP+NILI   GH+ LTDF L       T F  +  +N+K+           
Sbjct: 119 KMGFIHRDIKPDNILIDLDGHIKLTDFGLC------TGF--RWTHNSKY------YQKGS 164

Query: 203 HRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG 262
           H R  +     L ++ +  +     R+  + +R         ++S VGT  Y++PEV+  
Sbjct: 165 HIRQDSMEPSDLWDDVSNCR--CGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLR 222

Query: 263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDL 317
            G+    DWW++G++ +EML G  PF      ET   V+     +  P  V       DL
Sbjct: 223 KGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDL 282

Query: 318 IQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLR--PPFIPS 364
           I +L      +RLG   GA +IK H FF  V  D  +D+     P++P 
Sbjct: 283 ITKLCCSAE-ERLGR-NGADDIKAHPFFSEV--DFSSDIRTQPAPYVPK 327

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  116 bits (293), Expect = 1e-29
 Identities = 76/178 (42%), Positives = 94/178 (52%), Gaps = 20/178 (11%)

Query: 243 ERSNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRK----ETF 297
           ER+ SF GT EY++PE++RG  GH  AVDWW+LGIL +E+L G +PF  +  +    E  
Sbjct: 161 ERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVS 220

Query: 298 RNVLMKTPEFVGQRTALT-DLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRW-DLLT 354
           R +L   P F         DL+ +LL KDP KRLG   +GA EIKEH FFKG+ W  L  
Sbjct: 221 RRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEALAL 280

Query: 355 DVLRPPFIPS-REENDLTEKAMSGGGVDIREYFENLRA--PPPSMPPSPLPSPSHRSF 409
             + PPF PS R E D+   A         E F NL     P   PPS        SF
Sbjct: 281 RKVNPPFRPSIRNELDVGNFA---------EEFTNLEPVYSPAGTPPSGARVFQGYSF 329

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  116 bits (293), Expect = 1e-29
 Identities = 64/153 (41%), Positives = 87/153 (56%), Gaps = 7/153 (4%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRL 80
           LK+LGKG  G VF V       T +  FA+KV+ K+T+  + K  A  +A  E  +L  +
Sbjct: 1   LKVLGKGGYGKVFQVRKVTGADTGKI-FAMKVLKKATIVRNQKDTAHTKA--ERNILEAV 57

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            HPF+  L+ + +T   L   + Y  GG+L    + + + +F      FYLSEI  A+EH
Sbjct: 58  KHPFIVDLIYAFQTGGKLYLILEYLSGGEL--FMHLEREGIFMEDTACFYLSEISLALEH 115

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           LH  GI YRDLKPENIL+   GHV LTDF L +
Sbjct: 116 LHQQGIIYRDLKPENILLDAQGHVKLTDFGLCK 148

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  115 bits (289), Expect = 1e-29
 Identities = 44/120 (36%), Positives = 77/120 (64%), Gaps = 10/120 (8%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK--ETFR 298
           +G+++ +F GT EYV+PE++   G++F+VD+W+LGIL YE+L G  PF   +    E + 
Sbjct: 145 SGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYN 204

Query: 299 NVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWDL 352
           ++L     ++ P ++ +     DLI++LL ++P +RLG L+ G  +IK+H +F G  W+ 
Sbjct: 205 DILKGNGKLEFPNYIDKAA--KDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGFDWEG 262

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  115 bits (290), Expect = 2e-29
 Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 4/159 (2%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           N + L++LG GA G VFLV         +  +A+KV+ K+T+  K +     R E +VL 
Sbjct: 1   NFELLRVLGTGAYGKVFLVRKVGGHDAGKL-YAMKVLKKATIVQKAKTAEHTRTERQVLE 59

Query: 79  RL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
            +   PFL  L  + +TD  L   + Y  GG+L    Y++    F+ S +R Y++EI+ A
Sbjct: 60  AVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREH--FTESEVRVYIAEIVLA 117

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
           ++HLH +GI YRD+K ENIL+   GHV LTDF LS+  +
Sbjct: 118 LDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFL 156

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  114 bits (286), Expect = 5e-29
 Identities = 60/133 (45%), Positives = 82/133 (61%), Gaps = 9/133 (6%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPF----RGKNR 293
           D  ER+ SF GT EY++P++VRG   GH+ AVDWW++G+L YE+L G +PF       ++
Sbjct: 158 DEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQ 217

Query: 294 KETFRNVLMKTPEFVGQRTALT-DLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRW- 350
            E  R +L   P +  + +AL  D+IQRLL KDP KRLG     A EIK+H FF+ + W 
Sbjct: 218 AEISRRILKSEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWD 277

Query: 351 DLLTDVLRPPFIP 363
           DL    +  PF P
Sbjct: 278 DLAAKKVPAPFKP 290

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  114 bits (286), Expect = 1e-28
 Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 5/151 (3%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK+LG+G+ G VFLV  +   P A   +A+KV+ K+TL  +     R + E  +L+ ++H
Sbjct: 1   LKVLGQGSFGKVFLVR-KITGPDAGQLYAMKVLKKATLKVRDRV--RTKMERDILAEVNH 57

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PF+ KL  + +T+  L   + +  GGDL     K+   +F+   ++FYL+E+  A++HLH
Sbjct: 58  PFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLH 115

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++GI YRDLKPENIL+ + GH+ LTDF LS+
Sbjct: 116 SLGIIYRDLKPENILLDEEGHIKLTDFGLSK 146

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  114 bits (286), Expect = 1e-28
 Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 7/141 (4%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           ++S D+ +++ SF GT EY++PEVV   GH  + DWW+ G+L +EML G+ PF+GK+RKE
Sbjct: 146 KESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE 205

Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWD 351
           T   +L   +  P+F+        L++ L +++P  RLG    G  EIK H FF  + W+
Sbjct: 206 TMTMILKAKLGMPQFLSPEA--QSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWN 263

Query: 352 -LLTDVLRPPFIPSREENDLT 371
            L    ++PPF P+    D T
Sbjct: 264 KLYRREIKPPFKPAVGRPDDT 284

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score =  114 bits (286), Expect = 1e-28
 Identities = 61/153 (39%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+G  G VFL   +  D       ALK + KS L   +E  R    E  +L+     +L
Sbjct: 9   VGQGGYGQVFLAKKK--DTGEIV--ALKRMKKSLLFKLNEV-RHVLTERDILTTTKSEWL 63

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KLL + + DE+L  A+ Y PGGD   L    N  V S    RFY++E+  A++ LH +G
Sbjct: 64  VKLLYAFQDDEYLYLAMEYVPGGDFRTLL--NNLGVLSEDHARFYMAEMFEAVDALHELG 121

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
             +RDLKPEN LI  SGH+ LTDF LS+ +V  
Sbjct: 122 YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY 154

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score =  114 bits (286), Expect = 1e-28
 Identities = 48/128 (37%), Positives = 84/128 (65%), Gaps = 7/128 (5%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G+R+++F GT E+++PEV+    +  AVDWW LG+L YEML G +PF G + +E F +++
Sbjct: 155 GDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIV 214

Query: 302 ---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWD-LLTDV 356
              ++ P F+ +      +++RLL ++P +RLG   + A ++K+  FF+ + WD LL   
Sbjct: 215 NDEVRYPRFLSREAIS--IMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDDLLARK 272

Query: 357 LRPPFIPS 364
           ++PPF+P+
Sbjct: 273 IKPPFVPT 280

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  109 bits (276), Expect = 9e-28
 Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 9/112 (8%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK-NRKETF 297
            D GE+  +FVGT EY++PEV+ G G+  AVD W+LG++ YE+L G  PF G     E F
Sbjct: 147 LDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELF 206

Query: 298 RNVLMKTPEFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
           + +    P F      ++    DLI++LL KDP KRL       E  +H FF
Sbjct: 207 KKIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRLTAE----EALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score =  111 bits (280), Expect = 1e-27
 Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 15/137 (10%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL- 301
             +NS VG+ +Y++PEV+RG G++F VD+W+LG + YE L G  PF G    ET+ N+  
Sbjct: 153 TYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKY 212

Query: 302 ----MKTPEFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
               ++ P +   R  L+    DLI +L+  DP +R G L    +IK H FFK V W+ L
Sbjct: 213 WKETLQRPVYDDPRFNLSDEAWDLITKLIN-DPSRRFGSLE---DIKNHPFFKEVDWNEL 268

Query: 354 TDVLRPPFIPSREENDL 370
            + L+PPF+P   E+++
Sbjct: 269 RE-LKPPFVP-ELESEI 283

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score =  111 bits (279), Expect = 1e-27
 Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 6/126 (4%)

Query: 241 NGE-RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           NGE ++++F GT +Y++PE+++G  +  +VDWW+ G+L YEML G +PF G++  E F +
Sbjct: 148 NGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDS 207

Query: 300 VLMKTPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD-VL 357
           +L   P F    +    D + +L E+DP KRLG + G  +I++H FF+G+ W+ L    +
Sbjct: 208 ILNDRPHFPRWISKEAKDCLSKLFERDPTKRLG-VDG--DIRQHPFFRGIDWERLEKREI 264

Query: 358 RPPFIP 363
            PPF P
Sbjct: 265 PPPFKP 270

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  110 bits (277), Expect = 2e-27
 Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 4/161 (2%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           N + LK+LG GA G VFLV  +         +A+KV+ K+ L  K +     R E  VL 
Sbjct: 1   NFELLKVLGTGAYGKVFLVR-KVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLE 59

Query: 79  RLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
            +   PFL  L  + +T+  L   + Y  GG++    Y++++  FS   +RFY  EII A
Sbjct: 60  HVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDN--FSEDEVRFYSGEIILA 117

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           +EHLH +GI YRD+K ENIL+   GHV LTDF LS+  + +
Sbjct: 118 LEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSE 158

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  109 bits (274), Expect = 2e-27
 Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 12/155 (7%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH-EAERRARWEIRVLSRLSH 82
           ++LG+G+ G+V+L  D+          A+K V+ S    +  EA  R   EIR+LS L H
Sbjct: 6   ELLGRGSFGSVYLALDKDTGEL----MAVKSVELSGDSEEELEALER---EIRILSSLQH 58

Query: 83  PFLPKLLGSLETDEFLAWAVP--YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
           P + +  GS   +E     +   Y  GG L+ L  K         VIR Y  +I+  + +
Sbjct: 59  PNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAY 116

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           LH+ GI +RD+K  NIL+   G V L DF  ++ L
Sbjct: 117 LHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRL 151

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  110 bits (276), Expect = 3e-27
 Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 8/143 (5%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           ++S   G  +++F GT EY++PE++   GH  AVDWW+LG L Y+ML G  PF  +NRK+
Sbjct: 148 KESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK 207

Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRG-ACEIKEHVFFKGVRW- 350
           T   +L   +  P ++       DL+++LL+++P  RLG   G A E++ H FF+ V W 
Sbjct: 208 TIDKILKGKLNLPPYLTPEA--RDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWD 265

Query: 351 DLLTDVLRPPFIPS-REENDLTE 372
           DLL   + PPF P  + E D+++
Sbjct: 266 DLLARKVEPPFKPLLQSEEDVSQ 288

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  108 bits (271), Expect = 6e-27
 Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 4/159 (2%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           N + LK+LG GA G VFLV   +   + +  +A+KV+ K+T+  K +     R E +VL 
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVSGHDSGKL-YAMKVLKKATIVQKAKTTEHTRTERQVLE 59

Query: 79  RLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
            +   PFL  L  + +TD  L   + Y  GG+L      Q +R F    ++ Y  EI+ A
Sbjct: 60  HIRQSPFLVTLHYAFQTDTKLHLILDYINGGEL-FTHLSQRER-FKEQEVQIYSGEIVLA 117

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
           +EHLH +GI YRD+K ENIL+  +GHV LTDF LS+   
Sbjct: 118 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH 156

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  108 bits (271), Expect = 7e-27
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
           +R+ +  GT EY++PEV++  GH  AVDWWALGIL YEML G  PF   N    +  +L 
Sbjct: 153 DRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILA 212

Query: 303 KTPEFVGQ-RTALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWDLLTDV-LRP 359
              EF         DLI++LL  D  +RLG ++ GA ++K H +FK V WD +    L+P
Sbjct: 213 GKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDVPQRKLKP 272

Query: 360 PFIP 363
           P +P
Sbjct: 273 PIVP 276

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score =  108 bits (271), Expect = 1e-26
 Identities = 48/122 (39%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+++F GT +Y++PE+++G  + F+VDWW+ G+L YEML G +PF G +  E F ++ + 
Sbjct: 152 RASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVD 211

Query: 304 TPEFVGQRTALT-DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD-VLRPPF 361
           TP +    T  + D++++L E+DP +RLG +     I+ H FFK + W  L    L PPF
Sbjct: 212 TPHYPRWITKESKDILEKLFERDPTRRLGVVG---NIRGHPFFKTINWTALEKRELDPPF 268

Query: 362 IP 363
            P
Sbjct: 269 KP 270

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  107 bits (270), Expect = 2e-26
 Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT 304
           +++F GT EY++PEV+R   ++  VDWW LG + YEMLYG  PF  ++  E + N+L K 
Sbjct: 153 TSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKP 212

Query: 305 PEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW-DLLTDVLRPPFI 362
                  + +   L++ LL+KD  KRLG      EIK HVFF  + W DL+   + PPF 
Sbjct: 213 LRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDDLVNKKITPPFN 272

Query: 363 P 363
           P
Sbjct: 273 P 273

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score =  107 bits (270), Expect = 2e-26
 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 6/131 (4%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL- 301
           +R+ +  GT EY++PEV++  GH  AVDWW +G+L YE + G  PF        +  +L 
Sbjct: 170 DRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILA 229

Query: 302 --MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLLTDVLR 358
             +K P +   R    DL++ LL+ D  KRLG L  G  ++K H +F G  WD L     
Sbjct: 230 GRLKFPNWFDGRA--RDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWDKLYARYY 287

Query: 359 PPFIPSREEND 369
           P  IP R ++ 
Sbjct: 288 PAPIPVRVKSP 298

Length = 329

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score =  108 bits (270), Expect = 3e-26
 Identities = 92/354 (25%), Positives = 160/354 (45%), Gaps = 85/354 (24%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-V 76
           ++ + +K++G+GA G V LV  +    + R  +A+K++ K  +  + ++     WE R +
Sbjct: 43  EDYEVVKVIGRGAFGEVQLVRHK----STRKVYAMKLLSKFEMIKRSDSA--FFWEERDI 96

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           ++  + P++ +L  + + D +L   + Y PGGDL  L    ++        RFY +E++ 
Sbjct: 97  MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAEVVL 153

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A++ +H+MG  +RD+KP+N+L+ +SGH+ L DF     +                     
Sbjct: 154 ALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM--------------------- 192

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                               NK G+ +  +A  +P                     +Y+S
Sbjct: 193 --------------------NKEGMVRCDTAVGTP---------------------DYIS 211

Query: 257 PEVVR---GDGHE-FAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEF 307
           PEV++   GDG+     DWW++G+  YEML G TPF   +   T+  ++     +  P+ 
Sbjct: 212 PEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDD 271

Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR--WDLLTDVLRP 359
                   +LI   L    V RLG   G  EIK H+FFK  +  W+ L D + P
Sbjct: 272 NDISKEAKNLICAFLTDREV-RLGR-NGVEEIKRHLFFKNDQWAWETLRDTVAP 323

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score =  107 bits (268), Expect = 3e-26
 Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 3/128 (2%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           + +++N+F GT EY++PE++ G G+  AVDWW LG+L YEML G  PF  +N  E +R +
Sbjct: 146 DDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKI 205

Query: 301 LMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD-LLTDVLR 358
           L +   F  G      DL+  LL +DP +RLGY  GA EIK H FF  + W  LL   ++
Sbjct: 206 LQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGY-NGAQEIKNHPFFSQLSWKKLLMKGIQ 264

Query: 359 PPFIPSRE 366
           PPF P+  
Sbjct: 265 PPFKPAVS 272

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score =  106 bits (267), Expect = 5e-26
 Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 7/150 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K+LGKG  G V LV ++A   T +  +A+K++ K  + AK E       E RVL    HP
Sbjct: 1   KLLGKGTFGKVILVREKA---TGKY-YAMKILKKEVIIAKDEVAHTLT-ESRVLQNTRHP 55

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           FL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ A+ +LH+
Sbjct: 56  FLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERVFSEDRARFYGAEIVSALGYLHS 113

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             + YRDLK EN+++ + GH+ +TDF L +
Sbjct: 114 CDVVYRDLKLENLMLDKDGHIKITDFGLCK 143

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  106 bits (265), Expect = 1e-25
 Identities = 60/155 (38%), Positives = 84/155 (54%), Gaps = 16/155 (10%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-----AERRARWEIRVLS 78
           K++GKG+ G V L   +A        +A+KV+ K  +  K E     AER       +L 
Sbjct: 1   KVIGKGSFGKVLLAKHKADGKF----YAVKVLQKKAILKKKEQKHIMAERNV-----LLK 51

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
            + HPFL  L  S +T + L + + Y  GG+L    + Q +R F     RFY +EI  A+
Sbjct: 52  NVKHPFLVGLHYSFQTADKLYFVLDYVNGGEL--FFHLQRERSFPEPRARFYAAEIASAL 109

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            +LH++ I YRDLKPENIL+   GHV LTDF L +
Sbjct: 110 GYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  104 bits (261), Expect = 1e-25
 Identities = 49/116 (42%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           NG  +  FVGT +Y++PE + G G +   DWW+LG + +E L+G  PF  +     F N+
Sbjct: 146 NGLENKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNI 205

Query: 301 LMKT---PEFV--GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD 351
           L +    PE V         DLI RLL  DP KRLG   G  EIK H FFK + WD
Sbjct: 206 LSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLG-ANGYQEIKSHPFFKSINWD 260

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  103 bits (259), Expect = 2e-25
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +GKG  G V+    +          A+KV+   +   K +       EI++L +  HP +
Sbjct: 8   IGKGGFGEVYKARHKRT----GKEVAIKVIKLESKEKKEKIIN----EIQILKKCKHPNI 59

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            K  GS    + L   + +C GG L  L  K  ++  + S I +   E++  +E+LH+ G
Sbjct: 60  VKYYGSYLKKDELWIVMEFCSGGSLKDL-LKSTNQTLTESQIAYVCKELLKGLEYLHSNG 118

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLS 172
           I +RD+K  NIL+   G V L DF LS
Sbjct: 119 IIHRDIKAANILLTSDGEVKLIDFGLS 145

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  103 bits (258), Expect = 3e-25
 Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 17/162 (10%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-----AERRARWEIRVL 77
           LK + KGA G+V+L   R+        FA+KV+ KS + AK++     AER       ++
Sbjct: 1   LKPISKGAFGSVYLAKKRSTGDY----FAIKVLKKSDMIAKNQVTNVKAERAI-----MM 51

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
            +   P++ KL  S ++ ++L   + Y  GGD   L              + Y++E++  
Sbjct: 52  IQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLG 109

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN-LVKK 178
           +E LH  GI +RD+KPEN+LI Q+GH+ LTDF LSRN L  K
Sbjct: 110 VEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENK 151

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score =  103 bits (259), Expect = 6e-25
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 2/129 (1%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
           + + +F GT EY++PEV+R   ++  VDWW LG + YEMLYG  PF  ++  E + N+L 
Sbjct: 151 DTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILH 210

Query: 303 KTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW-DLLTDVLRPP 360
           K      G       +++ LLEKD  +RLG      EI+EH FF+ + W DL    + PP
Sbjct: 211 KPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLEQKKIPPP 270

Query: 361 FIPSREEND 369
           F P+ E  D
Sbjct: 271 FNPNVEGPD 279

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score =  102 bits (256), Expect = 7e-25
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR-ARWEIRVLSRLS 81
           +K +GKG+ G V+LV  ++        + LK +D   L    E ER  A  E+++L +L+
Sbjct: 5   IKQIGKGSFGKVYLVRRKSDGK----LYVLKEID---LSNMSEKEREDALNEVKILKKLN 57

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           HP + K   S E    L   + Y  GGDL+  + + K+  + F    I  +  ++  A++
Sbjct: 58  HPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALK 117

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +LH+  I +RD+KP+NI +  +G V L DF +S+ L
Sbjct: 118 YLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVL 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  101 bits (255), Expect = 8e-25
 Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 11/152 (7%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG G  G V LV  ++ + T    FALK V K  +      +     E  +L   +HPF+
Sbjct: 1   LGVGGFGRVELVKVKSKNRT----FALKCVKKRHIVET-GQQEHIFSEKEILEECNHPFI 55

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRV-FSPSVIRFYLSEIICAIEHLHN 143
            KL  + +  +++   + YC GG+L  +LR    DR  F     RFY++ ++ A E+LHN
Sbjct: 56  VKLYRTFKDKKYIYMLMEYCLGGELWTILR----DRGLFDEYTARFYIACVVLAFEYLHN 111

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            GI YRDLKPEN+L+  +G+V L DF  ++ L
Sbjct: 112 RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKL 143

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score =  101 bits (253), Expect = 2e-24
 Identities = 96/347 (27%), Positives = 142/347 (40%), Gaps = 76/347 (21%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKG  G V     RA        +A K ++K  +  +   E  A  E ++L +++  
Sbjct: 6   RVLGKGGFGEVCACQVRATGKM----YACKKLEKKRIKKRK-GEAMALNEKQILEKVNSR 60

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           F+  L  + ET + L   +    GGDL                 +F          H++N
Sbjct: 61  FVVSLAYAYETKDALCLVLTLMNGGDL-----------------KF----------HIYN 93

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           MG    D   E   +  +  +T    DL R                              
Sbjct: 94  MGNPGFD---EERAVFYAAEITCGLEDLHR------------------------------ 120

Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            RI+ R L   PEN   L      R+S +    +    GE     VGT  Y++PEVV+ +
Sbjct: 121 ERIVYRDLK--PENIL-LDDYGHIRISDLGLAVE-IPEGETIRGRVGTVGYMAPEVVKNE 176

Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETFRNVLMKTPEFVGQRT-ALTDLI 318
            + F+ DWW LG L YEM+ G +PFR +     R+E  R V     E+  + + A   + 
Sbjct: 177 RYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSIC 236

Query: 319 QRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWDLL-TDVLRPPFIP 363
           ++LL KDP  RLG    GA E+K H FF+   +  L   +L PPF P
Sbjct: 237 RQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLEPPFCP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score =  101 bits (252), Expect = 3e-24
 Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 7/132 (5%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR----GKNRK 294
              G++     GT  Y++PEV++G+ ++F+VDW+ALG   YEM+ G +PFR       ++
Sbjct: 145 LKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKE 204

Query: 295 ETFRNVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGAC-EIKEHVFFKGVRWDL 352
           E  R  L    E+  + +    DL + LL+KDP KRLG   G+  E++EH  FK + W  
Sbjct: 205 ELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRR 264

Query: 353 L-TDVLRPPFIP 363
           L   +L PPFIP
Sbjct: 265 LEAGMLEPPFIP 276

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  101 bits (253), Expect = 3e-24
 Identities = 55/128 (42%), Positives = 72/128 (56%), Gaps = 10/128 (7%)

Query: 250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG 309
           GT EY++PEV+   G+   VDWWA+GI+ YE L G  PF G   +E F  V+    E+  
Sbjct: 178 GTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPE 237

Query: 310 QRTAL----TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLR--PPFIP 363
              AL     DLI RLL ++P++RLG   GA E+K+H FF G+ W     +LR    FIP
Sbjct: 238 GDEALPADAQDLISRLLRQNPLERLG-TGGAFEVKQHRFFLGLDW---NGLLRQKAEFIP 293

Query: 364 SREENDLT 371
             E  D T
Sbjct: 294 QLESEDDT 301

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 99.6 bits (249), Expect = 6e-24
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 13/114 (11%)

Query: 241 NGERSNSFVGTEEYVSPEVVR-GDGHEFAVDWWALGILTYEMLYGTTPFRGKNR---KET 296
           +     +FVGT  Y++PEV+  G+G+   VD W+LG++ YE+L G  PF G+N     + 
Sbjct: 151 SSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQL 210

Query: 297 FRNVLMKTPEFVGQ-----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            R +L    EF             DLI++ L KDP KR      A EI +H +F
Sbjct: 211 IRRILGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRP----TAEEILQHPWF 260

Length = 260

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 99.9 bits (249), Expect = 6e-24
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LGKG  G V     +A        +A K +DK  L  K + E+ A  E ++L ++S  F+
Sbjct: 1   LGKGGFGEVCACQVKATGKM----YACKKLDKKRLK-KRKGEQMALNEKKILEKVSSRFI 55

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
             L  + ET + L   +    GGDL    Y   +  F  +   FY ++IIC +EHLH   
Sbjct: 56  VSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR 115

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I YRDLKPEN+L+   G+V ++D  L+  L    
Sbjct: 116 IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score =  100 bits (251), Expect = 7e-24
 Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 7/160 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K+LGKG  G V LV ++A+       +A+K++ K  + AK E       E RVL    HP
Sbjct: 1   KLLGKGTFGKVILVREKASGKY----YAMKILKKEVIIAKDEVAHTLT-ESRVLKNTRHP 55

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           FL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ A+++LH+
Sbjct: 56  FLTSLKYSFQTKDRLCFVMEYVNGGEL--FFHLSRERVFSEDRTRFYGAEIVSALDYLHS 113

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
             I YRDLK EN+++ + GH+ +TDF L +  +   A  K
Sbjct: 114 GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMK 153

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  100 bits (250), Expect = 9e-24
 Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 7/156 (4%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ + +K++  GA G V+LV  +      R  FA+K ++K  L  +++ ++    E  +L
Sbjct: 1   EDFETIKLISNGAYGAVYLVRHK----ETRQRFAMKKINKQNLILRNQIQQ-VFVERDIL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +   +PF+  +  S ET   L   + Y  GGD   L   +N       + R Y +E + A
Sbjct: 56  TFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLL--KNIGALPVDMARMYFAETVLA 113

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +E+LHN GI +RDLKP+N+LI   GH+ LTDF LS+
Sbjct: 114 LEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSK 149

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 99.7 bits (248), Expect = 2e-23
 Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 7/150 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RVL    HP
Sbjct: 1   KLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRVLQNTRHP 55

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           FL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ A+E+LH+
Sbjct: 56  FLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSALEYLHS 113

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             + YRD+K EN+++ + GH+ +TDF L +
Sbjct: 114 RDVVYRDIKLENLMLDKDGHIKITDFGLCK 143

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 99.7 bits (248), Expect = 2e-23
 Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 2/131 (1%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +++ ++   +++F GT EY++PEV+    ++  VDWW LG + YEMLYG  PF  +N  E
Sbjct: 144 KENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE 203

Query: 296 TFRNVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW-DLL 353
            + N+L K  +     T +   L++ LL+KD  KRLG      EIK H+FF  + W DL+
Sbjct: 204 MYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPINWDDLI 263

Query: 354 TDVLRPPFIPS 364
              + PPF P+
Sbjct: 264 NKKITPPFNPN 274

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 97.0 bits (242), Expect = 5e-23
 Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK--ETFRN 299
              + S  GT  Y++PEV+   G+  AVDWW+LG+  YE L G  P+RG +R   +  R 
Sbjct: 153 DTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRA 212

Query: 300 V-LMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
                   +     T   D I +LLE+DP KRLG      ++K H +F
Sbjct: 213 KQETADVLYPATWSTEAIDAINKLLERDPQKRLGD--NLKDLKNHPYF 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 97.8 bits (244), Expect = 6e-23
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           K+LGKG+ G V L   +  D      +A+KV+ K  +    + E     E RVL+    H
Sbjct: 1   KVLGKGSFGKVLLAELKGTDEL----YAVKVLKKDVILQDDDVECTMT-EKRVLALAGKH 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL +L    +T + L + + Y  GGDL  + + Q    F     RFY +EI+  ++ LH
Sbjct: 56  PFLTQLHSCFQTKDRLFFVMEYVNGGDL--MFHIQRSGRFDEPRARFYAAEIVLGLQFLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             GI YRDLK +N+L+   GH+ + DF + +
Sbjct: 114 ERGIIYRDLKLDNVLLDSEGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 97.4 bits (242), Expect = 1e-22
 Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 8/161 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RVL    HP
Sbjct: 1   KLLGKGTFGKVILVKEKA---TGRY-YAMKILKKEVIVAKDEVAHTLT-ENRVLQNSRHP 55

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           FL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ A+++LH+
Sbjct: 56  FLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERVFSEDRARFYGAEIVSALDYLHS 113

Query: 144 -MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
              + YRDLK EN+++ + GH+ +TDF L +  +K  A  K
Sbjct: 114 EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK 154

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 96.2 bits (239), Expect = 4e-22
 Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-AERRARWEIRVLSRLSH-P 83
           +GKG  G V+ V  R  D T R  +A+KV+ K  + AK E A       I V + L   P
Sbjct: 1   IGKGTFGQVYQV--RKKD-TRRI-YAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESP 56

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           F+  L  S +TD  L     Y  GG+L    + Q +  FS    +FY++E++ A+EHLH 
Sbjct: 57  FIVGLKFSFQTDSDLYLVTDYMSGGEL--FWHLQKEGRFSEDRAKFYIAELVLALEHLHK 114

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSR-NLVK 177
             I YRDLKPENIL+  +GH+ L DF LS+ NL  
Sbjct: 115 YDIVYRDLKPENILLDATGHIALCDFGLSKANLTD 149

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 95.4 bits (237), Expect = 6e-22
 Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 5/123 (4%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           ++ +F GT +Y++PE++ G  +  +VDWW+ G+L YEML G +PF G + +E F+++ M 
Sbjct: 152 KTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMD 211

Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD-VLRPPF 361
            P +    T    D++ +L  ++P +RLG ++G  +I++H FF+ + W  L +  + PPF
Sbjct: 212 NPCYPRWLTREAKDILVKLFVREPERRLG-VKG--DIRQHPFFREIDWSALEEREIEPPF 268

Query: 362 IPS 364
            P 
Sbjct: 269 KPK 271

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 95.3 bits (237), Expect = 6e-22
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 11/136 (8%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           NG+ +++F GT +Y++PE+++   +  +VDWWA+G+L YEML G  PF  +N  + F  +
Sbjct: 149 NGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAI 208

Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLR--GACEIKEHVFFKGVRWDLLTD 355
           L   +  P ++ Q     D+++  + K+P  RLG L   G   I  H FFK + W+ L  
Sbjct: 209 LNDEVVYPTWLSQDA--VDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEKLNR 266

Query: 356 -VLRPPFIP---SREE 367
             + PPF P   SRE+
Sbjct: 267 RQIEPPFRPRIKSRED 282

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 95.1 bits (236), Expect = 7e-22
 Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 6/150 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K++GKG+ G V L   +A +      +A+KV+ K  +  K E +        +L  + HP
Sbjct: 1   KVIGKGSFGKVLLARHKAEEKF----YAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHP 56

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           FL  L  S +T + L + + Y  GG+L    + Q +R F     RFY +EI  A+ +LH+
Sbjct: 57  FLVGLHFSFQTADKLYFVLDYINGGEL--FYHLQRERCFLEPRARFYAAEIASALGYLHS 114

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + I YRDLKPENIL+   GH+ LTDF L +
Sbjct: 115 LNIVYRDLKPENILLDSQGHIVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 95.3 bits (237), Expect = 7e-22
 Identities = 51/146 (34%), Positives = 85/146 (58%), Gaps = 18/146 (12%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF--------RGKNR 293
           G+ +++F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF          +N 
Sbjct: 150 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNT 209

Query: 294 KE-TFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRLGYLR--GACEIKEHVFFKG 347
           ++  F+ +L K    P  +  + +   +++  L KDP +RLG     G  +IK H FF+ 
Sbjct: 210 EDYLFQVILEKQIRIPRSLSVKAS--SVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRN 267

Query: 348 VRWDLL-TDVLRPPFIPSRE-ENDLT 371
           + WDLL    + PP+ P+ E + DL 
Sbjct: 268 IDWDLLEQKQVLPPYKPNIESDRDLD 293

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 93.7 bits (233), Expect = 7e-22
 Identities = 80/310 (25%), Positives = 119/310 (38%), Gaps = 73/310 (23%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR-ARWEIRVLSRLS 81
           +++LGKGA G   L + R  D +      L V  +  L    E ERR A  EI +LS L 
Sbjct: 5   IRVLGKGAFGEATL-YRRTEDDS------LVVWKEVNLTRLSEKERRDALNEIVILSLLQ 57

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           HP +         D  L   + Y  GG L     +Q  ++F   ++ +YL +I+ A+ ++
Sbjct: 58  HPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYI 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPK 201
           H  GI +RD+K            TL  F     L+K   F                    
Sbjct: 118 HKAGILHRDIK------------TLNIFLTKAGLIKLGDF-------------------- 145

Query: 202 RHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR 261
                             G+ K   +  S              + + VGT  Y+SPE+ +
Sbjct: 146 ------------------GISKILGSEYS-------------MAETVVGTPYYMSPELCQ 174

Query: 262 GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPEFVGQRTALTDLIQ 319
           G  + F  D WALG + YE+L     F   N       ++    TP      + L  L+ 
Sbjct: 175 GVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLVH 234

Query: 320 RLLEKDPVKR 329
            LL++DP KR
Sbjct: 235 SLLQQDPEKR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 95.0 bits (236), Expect = 8e-22
 Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 8/125 (6%)

Query: 245 SNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           +N+F GT EY++PEV+  + G+   VD+W+LG+L +EM  G +PF  ++ ++ +RN+   
Sbjct: 153 TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFG 212

Query: 304 TPEFVGQRTALTD----LIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLT-DVLR 358
              F   +  L+D     ++ LL ++P  RLG  R A E+KEH FF  + WDLL+   + 
Sbjct: 213 KVRF--PKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWDLLSKKQIT 270

Query: 359 PPFIP 363
           PPF P
Sbjct: 271 PPFKP 275

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 93.3 bits (232), Expect = 3e-21
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 25/186 (13%)

Query: 240 DNGERSNSFVGTEEYVSPEVVR----GDGHEFA-VDWWALGILTYEMLYGTTPFRGKNRK 294
           D   +SN  VGT +Y+SPE+++    G G      DWW+LG+  YEMLYG TPF  ++  
Sbjct: 155 DGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV 214

Query: 295 ETF------RNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ET+      +      P+         DLI+RL+   P  RLG   G  + K+H FF+G+
Sbjct: 215 ETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICS-PETRLGR-NGLQDFKDHPFFEGI 272

Query: 349 RWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPS--H 406
            WD + +    P++P                 D+ +  ++LR    S+PPS   + S  H
Sbjct: 273 DWDNIRN-STAPYVPE------VSSPTDTSNFDVDD--DDLRN-TESLPPSSHGAFSGNH 322

Query: 407 RSFAEY 412
             F  +
Sbjct: 323 LPFVGF 328

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 92.8 bits (230), Expect = 5e-21
 Identities = 47/133 (35%), Positives = 80/133 (60%), Gaps = 11/133 (8%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR------GKNRKE 295
           G+ +++F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF         N ++
Sbjct: 150 GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTED 209

Query: 296 TFRNVLMKTPEFVGQRTAL--TDLIQRLLEKDPVKRLG--YLRGACEIKEHVFFKGVRWD 351
               V+++ P  + +  ++  + +++  L KDP +RLG     G  +IK H FF+ + WD
Sbjct: 210 YLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSIDWD 269

Query: 352 LLTD-VLRPPFIP 363
           LL    + PPF P
Sbjct: 270 LLEKKQVTPPFKP 282

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 92.5 bits (230), Expect = 6e-21
 Identities = 45/127 (35%), Positives = 75/127 (59%), Gaps = 5/127 (3%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G+ + +F GT +Y++PE++    +  +VDWWA G+L YEML G  PF G++  E F++++
Sbjct: 155 GKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIM 214

Query: 302 MKTPEFVG--QRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWDLLTDV-L 357
                +     + A++ + + LL K P KRLG    G  +I+EH FF+ + W+ L    +
Sbjct: 215 EHNVSYPKSLSKEAVS-ICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKLERREI 273

Query: 358 RPPFIPS 364
           +PPF P 
Sbjct: 274 QPPFKPK 280

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 92.0 bits (228), Expect = 8e-21
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 6/150 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K++GKG+ G V L   R  D   +C +A+KV+ K  +  + E +        +L  + HP
Sbjct: 1   KVIGKGSFGKVLLA-KRKLD--GKC-YAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHP 56

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           FL  L  S +T E L + + +  GG+L    + Q +R F     RFY +EI  A+ +LH+
Sbjct: 57  FLVGLHYSFQTTEKLYFVLDFVNGGEL--FFHLQRERSFPEPRARFYAAEIASALGYLHS 114

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + I YRDLKPENIL+   GHV LTDF L +
Sbjct: 115 INIVYRDLKPENILLDSQGHVVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 91.6 bits (227), Expect = 1e-20
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 18/171 (10%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           ++   +G  + +F GT +Y++PE++    +  +VDWWA G+L YEML G  PF G++  E
Sbjct: 149 KEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDE 208

Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWD 351
            F++++   +  P+ + +      + + L+ K P KRLG    G  +I+EH FF+ + WD
Sbjct: 209 LFQSIMEHNVSYPKSLSKEA--VSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWD 266

Query: 352 LLTD-VLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPL 401
            L +  ++PPF P         K    G  +  ++F   R  P   PP  L
Sbjct: 267 KLENREIQPPFKP---------KVCGKGAENFDKFFT--RGQPVLTPPDQL 306

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 77/343 (22%), Positives = 121/343 (35%), Gaps = 105/343 (30%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           + L  +G+G  G V+   D+          A+K +            + A  EI++L  L
Sbjct: 2   QKLGKIGEGTYGVVYKARDKLTGEI----VAIKKIKLRFESEGIP--KTALREIKLLKEL 55

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIE 139
           +HP + KLL        L     +    D ++ +  K   R    S+I+ YL +++  + 
Sbjct: 56  NHPNIIKLLDVFRHKGDLYLVFEFM---DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLA 112

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
             H+ GI +RDLKPEN+LI   G + L DF L+R+                 PV P T  
Sbjct: 113 FCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGS--------------PVRPYTH- 157

Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
                 ++TRW                                           Y +PE+
Sbjct: 158 -----YVVTRW-------------------------------------------YRAPEL 169

Query: 260 VRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNR----------------------KET 296
           + GD G+   VD W++G +  E+L     F GK+                          
Sbjct: 170 LLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSL 229

Query: 297 FRNVLMKTPEFVGQRTALT---------DLIQRLLEKDPVKRL 330
            RN     P+  G               DL+ ++L  DP KR+
Sbjct: 230 ARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRI 272

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 90.6 bits (225), Expect = 2e-20
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           K+LGKG+ G V L   +  +      FA+K + K  +    + E     E RVL+    H
Sbjct: 1   KVLGKGSFGKVMLAELKGTNEF----FAIKALKKDVVLEDDDVEC-TMVERRVLALAWEH 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL  L  + +T E L + + Y  GGDL  + + Q+   F  +  RFY +EIIC ++ LH
Sbjct: 56  PFLTHLFCTFQTKEHLFFVMEYLNGGDL--MFHIQSSGRFDEARARFYAAEIICGLQFLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             GI YRDLK +N+L+ + GH+ + DF + +
Sbjct: 114 KKGIIYRDLKLDNVLLDKDGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 91.2 bits (226), Expect = 2e-20
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 7/154 (4%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +GKG+ G V  V  R    T R  +ALK + K+ + ++ E       E  VL++++ PF+
Sbjct: 1   IGKGSFGKVMQVRKR---DTQRI-YALKTIRKAHIVSRSEVTHTLA-ERTVLAQVNCPFI 55

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
             L  S ++ E L   + +  GG+L    + Q +  F  S  RFY +E++CA+E+LH   
Sbjct: 56  VPLKFSFQSPEKLYLVLAFINGGEL--FHHLQREGRFDLSRARFYTAELLCALENLHKFN 113

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           + YRDLKPENIL+   GH+ L DF L +  +K  
Sbjct: 114 VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD 147

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 90.6 bits (225), Expect = 2e-20
 Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G    +F GT EY++PEV+  + +  AVDWW LG++ YEM+ G  PF  ++ ++ F  +L
Sbjct: 149 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 208

Query: 302 MKTPEFVGQRT-ALTDLIQRLLEKDPVKRL-GYLRGACEIKEHVFFKGVRW-DLLTDVLR 358
           M+   F    +     L+  LL+KDP +RL G    A EI EH FF  + W D++   L 
Sbjct: 209 MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVVQKKLE 268

Query: 359 PPFIPS 364
           PPF P 
Sbjct: 269 PPFKPQ 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 90.5 bits (224), Expect = 3e-20
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G    +F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 129 LDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 188

Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ ++ F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 189 MMCGRLPFYNQDHEKLFELILMEEIRF--PRTLSPEAKSLLSGLLKKDPKQRLGGGPDDA 246

Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIP 363
            EI +H FF G+ W D+    L PPF P
Sbjct: 247 KEIMQHKFFAGIVWQDVYEKKLVPPFKP 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 90.7 bits (225), Expect = 3e-20
 Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS-RLSH 82
           K+LGKG+ G V L   +  D      +A+KV+ K  +    + +     E R+L+    H
Sbjct: 1   KVLGKGSFGKVMLAELKGTDEV----YAIKVLKKDVILQDDDVDCTMT-EKRILALAAKH 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL  L    +T + L + + Y  GGDL  +   Q  R F     RFY +E+  A+  LH
Sbjct: 56  PFLTALHCCFQTKDRLFFVMEYVNGGDL--MFQIQRSRKFDEPRSRFYAAEVTLALMFLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             G+ YRDLK +NIL+   GH  L DF + +
Sbjct: 114 RHGVIYRDLKLDNILLDAEGHCKLADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 11/152 (7%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL---SR 79
           L +LG+G  G V L   +         +A+K + K  + A+ E E     E R+    + 
Sbjct: 4   LAVLGRGHFGKVLLAEYK----KTGELYAIKALKKGDIIARDEVES-LMCEKRIFETANS 58

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
             HPFL  L    +T++ + + + Y  GGDL  + +   D VFS     FY + ++  ++
Sbjct: 59  ERHPFLVNLFACFQTEDHVCFVMEYAAGGDL--MMHIHTD-VFSEPRAVFYAACVVLGLQ 115

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDL 171
           +LH   I YRDLK +N+L+   G V + DF L
Sbjct: 116 YLHENKIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 89.9 bits (223), Expect = 4e-20
 Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 9/130 (6%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           NG  + +F GT +Y++PE+++   +  +VDWWALG+L YEM+ G  PF   N  + F ++
Sbjct: 149 NGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESI 208

Query: 301 LMKT---PEFVGQRTALTDLIQRLLEKDPVKRLGYL---RGACEIKEHVFFKGVRWDLL- 353
           L      P ++ +      +++  + K+P KRLG +    G   IK+H FFK + W LL 
Sbjct: 209 LHDDVLYPVWLSKEA--VSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWVLLE 266

Query: 354 TDVLRPPFIP 363
              ++PPF P
Sbjct: 267 QRKIKPPFKP 276

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 89.7 bits (222), Expect = 5e-20
 Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 7/148 (4%)

Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +     +F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 128 LDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 187

Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTD---LIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ ++ F  +LM+  +F   RT   D   L+  LL KDP KRL G    A
Sbjct: 188 MMCGRLPFYNQDHEKLFELILMEDIKF--PRTLSADAKSLLSGLLIKDPNKRLGGGPDDA 245

Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIP 363
            EI  H FF GV W D+    L PPF P
Sbjct: 246 KEIMRHSFFTGVNWQDVYDKKLVPPFKP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 89.1 bits (222), Expect = 5e-20
 Identities = 83/363 (22%), Positives = 138/363 (38%), Gaps = 124/363 (34%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER--------RARWEI 74
           L+ LG+G  G V+    +A D       ALK +       + + E         R   EI
Sbjct: 4   LEKLGEGTYGVVY----KARDKKTGEIVALKKI-------RLDNEEEGIPSTALR---EI 49

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSE 133
            +L  L HP + KLL  + T+  L     YC   D+++ +Y  +     SP++I+  + +
Sbjct: 50  SLLKELKHPNIVKLLDVIHTERKLYLVFEYC---DMDLKKYLDKRPGPLSPNLIKSIMYQ 106

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           ++  + + H+  I +RDLKP+NILI + G + L DF L+R      AF          P+
Sbjct: 107 LLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLAR------AFG--------IPL 152

Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
              T        ++T W                                           
Sbjct: 153 RTYTHE------VVTLW------------------------------------------- 163

Query: 254 YVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNR---------------KETF 297
           Y +PE++ G  H   AVD W++G +  EM+ G   F G +                +E++
Sbjct: 164 YRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESW 223

Query: 298 RNV------LMKTPEFVGQR---------TALTDLIQRLLEKDPVKRLGYLRGACEIKEH 342
             V          P+F  +              DL+ ++L+ +P KR+     A E  +H
Sbjct: 224 PGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRI----SAKEALKH 279

Query: 343 VFF 345
            +F
Sbjct: 280 PYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 89.7 bits (222), Expect = 6e-20
 Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 7/133 (5%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           ++   +G    +F GT EY++PEV+  + +  AVDWW LG++ YEM+ G  PF  ++ + 
Sbjct: 143 KEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER 202

Query: 296 TFRNVLMKTPEFVGQRTALTD---LIQRLLEKDPVKRL-GYLRGACEIKEHVFFKGVRW- 350
            F  +LM+   F   RT   +   L+  LL+KDP +RL G    A E+ EH FF  + W 
Sbjct: 203 LFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQ 260

Query: 351 DLLTDVLRPPFIP 363
           D++   L PPF P
Sbjct: 261 DVVQKKLLPPFKP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 89.6 bits (222), Expect = 6e-20
 Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS-RLSH 82
           K+LGKG+ G VFL   +  +      FA+K + K  +    + E     E RVLS    H
Sbjct: 1   KMLGKGSFGKVFLAELKGTNQF----FAIKALKKDVVLMDDDVEC-TMVEKRVLSLAWEH 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL  L  + +T E L + + Y  GGDL  + + Q+   F      FY +EIIC ++ LH
Sbjct: 56  PFLTHLYCTFQTKENLFFVMEYLNGGDL--MFHIQSCHKFDLPRATFYAAEIICGLQFLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + GI YRDLK +NIL+   GH+ + DF + +
Sbjct: 114 SKGIVYRDLKLDNILLDTDGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 88.3 bits (220), Expect = 6e-20
 Identities = 65/316 (20%), Positives = 116/316 (36%), Gaps = 74/316 (23%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           L+  K LG+GA G V+    +          A+K + +     + E       E  ++ +
Sbjct: 1   LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLE---EASIMKK 57

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           LSHP + +LLG     E L     Y PGGDL + LR  ++    +   +     +I   +
Sbjct: 58  LSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLR--KHGEKLTLKDLLQMALQIAKGM 115

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTE 198
           E+L +    +RDL   N L+ ++  V ++DF LSR++ +   + K+     K P+     
Sbjct: 116 EYLESKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRG--GGKLPI----- 168

Query: 199 NPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE 258
                     +W+                                            +PE
Sbjct: 169 ----------KWM--------------------------------------------APE 174

Query: 259 VVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNV----LMKTPEFVGQRTA 313
            ++        D W+ G+L +E+   G  P+ G + +E    +     +  PE       
Sbjct: 175 SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLELLEDGYRLPRPENCPDE-- 232

Query: 314 LTDLIQRLLEKDPVKR 329
           L +L+ +    DP  R
Sbjct: 233 LYELMLQCWAYDPEDR 248

Length = 258

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 88.9 bits (220), Expect = 6e-20
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 7/122 (5%)

Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK---ETFRNVLMKTP 305
           VGT  Y++PEVV+ + + F+ DWWALG L YEM+ G +PF+ + +K   E    ++ +  
Sbjct: 162 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQ 221

Query: 306 EFVGQRTA--LTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLL-TDVLRPPF 361
           E   ++ +     L + LL KDP +RLG    GA E+KEH  FK + +  L   +L PPF
Sbjct: 222 EEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLEAGMLEPPF 281

Query: 362 IP 363
            P
Sbjct: 282 KP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 89.7 bits (222), Expect = 6e-20
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 18/163 (11%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +G  + +F GT +Y++PE++    +  +VDWWA G+L YEML G  PF G++  E F+++
Sbjct: 154 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSI 213

Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWDLLT-D 355
           +   +  P+ + +      + + L+ K P KRLG    G  +IKEH FF+ + W+ L   
Sbjct: 214 MEHNVAYPKSMSKEAVA--ICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERK 271

Query: 356 VLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPP 398
            ++PP+ P         KA      +  ++F   R PP   PP
Sbjct: 272 EVQPPYKP---------KACGRDAENFDKFFT--RHPPVLTPP 303

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 89.0 bits (220), Expect = 1e-19
 Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 17/138 (12%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR--------GKNR 293
           G+ +++F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF          +N 
Sbjct: 150 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 209

Query: 294 KETFRNVLM----KTPEFVGQRTALTDLIQRLLEKDPVKRLGYL--RGACEIKEHVFFKG 347
           ++    V++    + P  +  + A   +++  L KDP +RLG     G  +I+ H FF+ 
Sbjct: 210 EDYLFQVILEKQIRIPRSLSVKAA--SVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN 267

Query: 348 VRWDLLTD-VLRPPFIPS 364
           V WDL+    + PPF P+
Sbjct: 268 VDWDLMEQKQVVPPFKPN 285

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 7/129 (5%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETF 297
           GE     VGT  Y++PEV+  + + F+ DWW LG L YEM+ G +PFR +     R+E  
Sbjct: 155 GETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVD 214

Query: 298 RNVLMKTPEFVGQRTA-LTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLL-T 354
           R V     E+  + +     + + LL K+P +RLG    GA  +K+H  FK + +  L  
Sbjct: 215 RRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLEA 274

Query: 355 DVLRPPFIP 363
           ++L PPF P
Sbjct: 275 NMLEPPFCP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 87.3 bits (216), Expect = 3e-19
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS-RLSH 82
           ++LGKG+ G V L   + +       +A+KV+ K  +    + E     E R+LS   +H
Sbjct: 1   RVLGKGSFGKVMLARLKESGRL----YAVKVLKKDVILQDDDVECTMT-EKRILSLARNH 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL +L    +T + L + + +  GGDL  + + Q  R F  +  RFY +EI  A+  LH
Sbjct: 56  PFLTQLYCCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAAEITSALMFLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + GI YRDLK +N+L+   GH  L DF + +
Sbjct: 114 DKGIIYRDLKLDNVLLDHEGHCKLADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 86.0 bits (213), Expect = 4e-19
 Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 68/269 (25%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-----RWEIRVLSR 79
           ++G G+ G+V+L      + ++    A+K V+  ++ A  +  +R+       EI +L  
Sbjct: 7   LIGSGSFGSVYL----GMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKE 62

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L H  + + LGS    + L   + Y PGG +  L    N   F  +++R ++ +I+  + 
Sbjct: 63  LQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALL--NNYGAFEETLVRNFVRQILKGLN 120

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LHN GI +RD+K  NIL+   G + ++DF +S+ L      E  SL+            
Sbjct: 121 YLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKL------EANSLST----------- 163

Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
                                  KT  AR S                   G+  +++PEV
Sbjct: 164 -----------------------KTNGARPS-----------------LQGSVFWMAPEV 183

Query: 260 VRGDGHEFAVDWWALGILTYEMLYGTTPF 288
           V+   +    D W+LG L  EML G  PF
Sbjct: 184 VKQTSYTRKADIWSLGCLVVEMLTGKHPF 212

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIRVLSRLSHP 83
           +G+GA G VF   DR    T     ALK V    L     ++A R    EI+ L    HP
Sbjct: 8   IGEGAHGIVFKAKDRETGETV----ALKKVALRRLEGGIPNQALR----EIKALQACQHP 59

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           ++ KLL            + Y P     VLR    +R    + ++ Y+  ++  + ++H 
Sbjct: 60  YVVKLLDVFPHGSGFVLVMEYMPSDLSEVLR--DEERPLPEAQVKSYMRMLLKGVAYMHA 117

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            GI +RDLKP N+LI   G + + DF L+R
Sbjct: 118 NGIMHRDLKPANLLISADGVLKIADFGLAR 147

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 85.8 bits (212), Expect = 6e-19
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 10/157 (6%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-- 82
           I+G+G  G V+    R AD T +  +A+K +DK  +  K + E  A  E  +LS +S   
Sbjct: 1   IIGRGGFGEVYGC--RKAD-TGKM-YAMKCLDKKRIKMK-QGETLALNERIMLSLVSTGD 55

Query: 83  -PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
            PF+  +  +  T + L++ +    GGDL+   +     VFS + +RFY +EII  +EH+
Sbjct: 56  CPFIVCMSYAFHTPDKLSFILDLMNGGDLHY--HLSQHGVFSEAEMRFYAAEIILGLEHM 113

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           HN  + YRDLKP NIL+ + GHV ++D  L+ +  KK
Sbjct: 114 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 85.3 bits (212), Expect = 7e-19
 Identities = 63/283 (22%), Positives = 107/283 (37%), Gaps = 68/283 (24%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           L   K LG+GA G V+    +          A+K + +     + E   R   E R++ +
Sbjct: 1   LTLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLR---EARIMRK 57

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           L HP + KLLG    +E L   + Y PGGDL + LR  +  +  S S +  +  +I   +
Sbjct: 58  LDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRP-KELSLSDLLSFALQIARGM 116

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTE 198
           E+L +    +RDL   N L+ ++  V ++DF LSR+L     ++ +     K P+     
Sbjct: 117 EYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGG---KLPI----- 168

Query: 199 NPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE 258
                     RW+                                            +PE
Sbjct: 169 ----------RWM--------------------------------------------APE 174

Query: 259 VVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNV 300
            ++        D W+ G+L +E+   G  P+ G +  E    +
Sbjct: 175 SLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVLEYL 217

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 85.8 bits (212), Expect = 7e-19
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            +  ++LGKG  G V     RA        +A K ++K  +  K + E  A  E ++L +
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKM----YACKRLEKKRIK-KRKGESMALNEKQILEK 56

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           ++  F+  L  + ET + L   +    GGDL    Y   +  F      FY +EI+C +E
Sbjct: 57  VNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLE 116

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            LH     YRDLKPENIL+   GH+ ++D  L+
Sbjct: 117 DLHRENTVYRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 86.0 bits (213), Expect = 1e-18
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 7/168 (4%)

Query: 12  TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           T S  L + +  + LG G+ G V +   +          A+K + K  +    + +  A+
Sbjct: 12  TSSWKLSDFEMGETLGTGSFGRVRIAKHKGTGEYY----AIKCLKKREILKMKQVQHVAQ 67

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  +L  LSHPF+  ++ S + +  + + + +  GG+L    + +    F   V +FY 
Sbjct: 68  -EKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGEL--FTHLRKAGRFPNDVAKFYH 124

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +E++ A E+LH+  I YRDLKPEN+L+   GHV +TDF  ++ +  +T
Sbjct: 125 AELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT 172

Length = 329

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 85.0 bits (210), Expect = 1e-18
 Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 7/129 (5%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETF 297
           GE     VGT  Y++PEV+    +  + D+W LG L YEM+ G +PFRG+     R+E  
Sbjct: 155 GESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVD 214

Query: 298 RNVLMKTPEFVGQRTALTDLI-QRLLEKDPVKRLG-YLRGACEIKEHVFFKGVRWDLL-T 354
           R VL     +  + +     I + LL KDP +RLG    GA E+K H FF+ + +  L  
Sbjct: 215 RRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLEA 274

Query: 355 DVLRPPFIP 363
            +L PPF+P
Sbjct: 275 GMLDPPFVP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 70/316 (22%), Positives = 118/316 (37%), Gaps = 75/316 (23%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           L   K LG+GA G V+    +      +   A+K + +     +   E     E R++ +
Sbjct: 1   LTLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDA-SEQQIEEFLR--EARIMRK 57

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAI 138
           L HP + KLLG    +E L   + Y  GGDL  L Y ++N    S S +  +  +I   +
Sbjct: 58  LDHPNVVKLLGVCTEEEPLYIVMEYMEGGDL--LSYLRKNRPKLSLSDLLSFALQIARGM 115

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTE 198
           E+L +    +RDL   N L+ ++  V ++DF LSR+L     + K+     K P+     
Sbjct: 116 EYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGG---KLPI----- 167

Query: 199 NPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE 258
                     RW+                                            +PE
Sbjct: 168 ----------RWM--------------------------------------------APE 173

Query: 259 VVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNV----LMKTPEFVGQRTA 313
            ++        D W+ G+L +E+   G  P+ G + +E    +     +  P        
Sbjct: 174 SLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEYLKNGYRLPQPP--NCPPE 231

Query: 314 LTDLIQRLLEKDPVKR 329
           L DL+ +   +DP  R
Sbjct: 232 LYDLMLQCWAEDPEDR 247

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 8/151 (5%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           ++G+GA G V+    +  +       A+K +    +  K EA +    EI +L  L HP 
Sbjct: 7   LIGRGAFGVVY----KGLNLETGDFVAIKQISLEKI--KEEALKSIMQEIDLLKNLKHPN 60

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
           + K +GS+ET + L   + Y   G L  +  K+    F  S++  Y+ +++  + +LH  
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQI-IKKFGP-FPESLVAVYVYQVLQGLAYLHEQ 118

Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           G+ +RD+K  NIL  + G V L DF ++  L
Sbjct: 119 GVIHRDIKAANILTTKDGVVKLADFGVATKL 149

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 86.9 bits (215), Expect = 3e-18
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 12/134 (8%)

Query: 234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR 293
           RR  +   GER    +GT +Y++PE++ G  H  AVDWWALG+  +E L G  PF  +  
Sbjct: 529 RRGAAPVEGER---ILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETP 585

Query: 294 KETFRNVLMKTPEFVGQRTALTD----LIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
           ++ F+N+L +   +      L+      I+ LL  DP KR     G  E+K+H  F GV 
Sbjct: 586 QQVFQNILNRDIPWPEGEEKLSVNAQNAIEILLTMDPTKR----AGLKELKQHPLFHGVD 641

Query: 350 WDLLTDVLRPPFIP 363
           W+ L +    PFIP
Sbjct: 642 WENLQNQ-TMPFIP 654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 16/157 (10%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-----RW 72
           D+ + LK++G+GA G V +V  +         +A+K+++K       E  +RA     R 
Sbjct: 1   DDFEILKVIGRGAFGEVAVVKMKNTGQV----YAMKILNK------WEMLKRAETACFRE 50

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  VL      ++  L  + + +  L   + Y  GGDL  L  K  DR+    + RFYL+
Sbjct: 51  ERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRL-PEDMARFYLA 109

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           E++ AI+ +H +G  +RD+KP+N+L+ ++GH+ L DF
Sbjct: 110 EMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADF 146

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 82.6 bits (204), Expect = 6e-18
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR-ARWEIRVL 77
             + ++++G+GA G V L   +A          L ++ +  +    + ER  A+ E +VL
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQ-------KLVIIKQIPVEQMTKDERLAAQNECQVL 53

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
             LSHP + +   +   D+ L   + Y PGG L     K+ + +     I  +  +I+ A
Sbjct: 54  KLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLA 113

Query: 138 IEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTA 180
           + H+H   I +RDLK +NIL+ +    V + DF +S+ L  K+ 
Sbjct: 114 LHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 82.8 bits (204), Expect = 9e-18
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            +  ++LGKG  G V     RA        +A K ++K  +  K + E  A  E ++L +
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKM----YACKKLEKKRIK-KRKGESMALNEKQILEK 56

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           ++  F+  L  + ET + L   +    GGDL    Y   +  F      FY +EI C +E
Sbjct: 57  VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLE 116

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            LH   I YRDLKPENIL+   GH+ ++D  L+
Sbjct: 117 DLHQERIVYRDLKPENILLDDHGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 82.0 bits (202), Expect = 1e-17
 Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 7/130 (5%)

Query: 243 ERSNSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFR---GKNRKETFR 298
           ++ ++ VGT  Y++PEV+ +G  ++ + DW++LG + +++L G +PFR    K++ E  R
Sbjct: 150 KKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR 209

Query: 299 NVLMKTPEFVGQRTA-LTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWD-LLTD 355
             L    E     +  L  L++ LL++D  KRLG L RGA E+KEHVFFKG+ W  +   
Sbjct: 210 MTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQVYLQ 269

Query: 356 VLRPPFIPSR 365
              PP IP R
Sbjct: 270 KYPPPLIPPR 279

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 14/159 (8%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           +++G+G+   V LV  +         +A+KV+ K  ++   + +    W   E  V    
Sbjct: 1   RVIGRGSYAKVLLVELKKTRRI----YAMKVIKKELVNDDEDID----WVQTEKHVFETA 52

Query: 81  S-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           S HPFL  L    +T+  L + + +  GGDL  + + Q  R       RFY +EI  A+ 
Sbjct: 53  SNHPFLVGLHSCFQTESRLFFVIEFVSGGDL--MFHMQRQRKLPEEHARFYSAEISLALN 110

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
            LH  GI YRDLK +N+L+   GH+ LTD+ + +  ++ 
Sbjct: 111 FLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRP 149

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 10/157 (6%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-- 82
           I+G+G  G V+    R AD T +  +A+K +DK  +  K + E  A  E  +LS +S   
Sbjct: 1   IIGRGGFGEVYGC--RKAD-TGKM-YAMKCLDKKRIKMK-QGETLALNERIMLSLVSTGD 55

Query: 83  -PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
            PF+  +  +  T + L + +    GGDL+   +     VFS   +RFY +EII  +EH+
Sbjct: 56  CPFIVCMTYAFHTPDKLCFILDLMNGGDLHY--HLSQHGVFSEKEMRFYATEIILGLEHM 113

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           HN  + YRDLKP NIL+ + GHV ++D  L+ +  KK
Sbjct: 114 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 81.0 bits (201), Expect = 2e-17
 Identities = 66/320 (20%), Positives = 118/320 (36%), Gaps = 83/320 (25%)

Query: 24  KILGKGAMGTVFL--VHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS 81
           K LG+GA G V+   +  +          A+K + +     + +   +   E RV+ +L 
Sbjct: 1   KKLGEGAFGEVYKGKLKGK---DGKTTEVAVKTLKEDASEEERKDFLK---EARVMKKLG 54

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVF------SPSVIRFYLSEI 134
           HP + +LLG    +E L   + Y  GGDL + LR  +           S   +  +  +I
Sbjct: 55  HPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQI 114

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
              +E+L +    +RDL   N L+ +   V ++DF LSR++     + K++    K P+ 
Sbjct: 115 AKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKT--GGKLPI- 171

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
                         RW+                                           
Sbjct: 172 --------------RWM------------------------------------------- 174

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVL----MKTPEFVG 309
            +PE ++        D W+ G+L +E+   G TP+ G + +E    +     +  PE+  
Sbjct: 175 -APESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCP 233

Query: 310 QRTALTDLIQRLLEKDPVKR 329
               L +L+    + DP  R
Sbjct: 234 DE--LYELMLSCWQLDPEDR 251

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 81.1 bits (200), Expect = 3e-17
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LGKG  G V  V  +         +A K +DK  L  K   E+ A  E  +L +++ PF+
Sbjct: 1   LGKGGFGEVCAVQVKNTGKM----YACKKLDKKRLK-KKSGEKMALLEKEILEKVNSPFI 55

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
             L  + E+   L   +    GGDL    Y   +R      +  Y ++I C I HLH+M 
Sbjct: 56  VNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMD 115

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLS 172
           I YRD+KPEN+L+   G+  L+D  L+
Sbjct: 116 IVYRDMKPENVLLDDQGNCRLSDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 83.0 bits (205), Expect = 4e-17
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 17/156 (10%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH-----EAERRARWEIRVL 77
           +K + +GA G V+L   +         +A+KVV K+ +  K+     +AER A      L
Sbjct: 9   VKPISRGAFGKVYLGRKKNNSKL----YAVKVVKKADMINKNMVHQVQAERDAL----AL 60

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           S+   PF+  L  SL++   +   + Y  GGD+  L +      F   +   Y+SE+  A
Sbjct: 61  SK--SPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALA 116

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +++LH  GI +RDLKP+N+LI   GH+ LTDF LS+
Sbjct: 117 LDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK 152

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 81.7 bits (202), Expect = 5e-17
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGH--EFA--VDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           R ++ VGT +Y+SPEV++  G    +    DWW++G+  YEML G TPF   +   T+  
Sbjct: 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK 258

Query: 300 VL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLT 354
           ++     +  P+ +       DLI   L    V RLG   G  EIK H FFK  +W    
Sbjct: 259 IMDHKNSLTFPDDIEISKQAKDLICAFLTDREV-RLGR-NGVDEIKSHPFFKNDQWTF-- 314

Query: 355 DVLR---PPFIPSREENDLT 371
           D +R    P +P    +  T
Sbjct: 315 DNIRETVAPVVPELSSDIDT 334

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 79.9 bits (198), Expect = 6e-17
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR--ARWEIR 75
            +L+ +K+LG+G+ G V+ V  +   PT    +ALK +     H   + E R     E++
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHK---PTG-KIYALKKI-----HVDGDEEFRKQLLRELK 51

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
            L     P++ K  G+   +  ++  + Y  GG L  L  K         V+ +   +I+
Sbjct: 52  TLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKK--VGKIPEPVLAYIARQIL 109

Query: 136 CAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +++LH    I +RD+KP N+LI   G V + DF +S+ L
Sbjct: 110 KGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVL 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 80.0 bits (197), Expect = 7e-17
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 7/122 (5%)

Query: 249 VGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFRG---KNRKETFRNVLMKT 304
           VGT  Y++PEV+ +G  ++ + DW++LG + +++L G +PFR    K++ E  R  L   
Sbjct: 156 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA 215

Query: 305 PEFVGQ-RTALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLL-TDVLRPPF 361
            E        L  L++ LL++D  +RLG L RGA E+KEH FF+ + W ++      PP 
Sbjct: 216 VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQKYPPPL 275

Query: 362 IP 363
           IP
Sbjct: 276 IP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 80.8 bits (199), Expect = 7e-17
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 14/135 (10%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRG--DG---HEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           D   +S+  VGT +Y+SPE+++   DG   +    DWW+LG+  YEMLYG TPF  ++  
Sbjct: 155 DGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV 214

Query: 295 ETFRNVL-----MKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ET+  ++      + P  +   +    DLIQRL+     +RLG   G  + K+H FF+G+
Sbjct: 215 ETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRE-RRLGQ-NGIEDFKKHAFFEGI 272

Query: 349 RWDLLTDVLRPPFIP 363
            W+ + + L  P+IP
Sbjct: 273 DWENIRN-LEAPYIP 286

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 80.5 bits (198), Expect = 8e-17
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ + LK++G+GA G V +V  + AD      FA+K+++K  +  + E     R E  VL
Sbjct: 1   EDFEILKVIGRGAFGEVAVVKLKNADKV----FAMKILNKWEMLKRAETAC-FREERDVL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
               + ++  L  + + +  L   + Y  GGDL  L  K  DR+    + RFYL+E++ A
Sbjct: 56  VNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRL-PEDMARFYLAEMVIA 114

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           I+ +H +   +RD+KP+NIL+  +GH+ L DF
Sbjct: 115 IDSVHQLHYVHRDIKPDNILMDMNGHIRLADF 146

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           +++G+G+   V LV  +  +      +A+KVV K  ++   + +   + E  V  + S H
Sbjct: 1   RVIGRGSYAKVLLVRLKKTERI----YAMKVVKKELVNDDEDIDW-VQTEKHVFEQASNH 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL  L    +T+  L + + Y  GGDL  + + Q  R       RFY +EI  A+ +LH
Sbjct: 56  PFLVGLHSCFQTESRLFFVIEYVNGGDL--MFHMQRQRKLPEEHARFYSAEISLALNYLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             GI YRDLK +N+L+   GH+ LTD+ + +
Sbjct: 114 ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK 144

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 80.4 bits (198), Expect = 1e-16
 Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 8   QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE 67
           +P+    +  ++   ++ LG G+ G V L   +  D     P A+K  +KS +  + + +
Sbjct: 20  EPKRKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFP---PVAIKRFEKSKIIKQKQVD 76

Query: 68  RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI 127
                E ++L+ ++HPF   L GS + + +L   + +  GG+     + + ++ F   V 
Sbjct: 77  HVFS-ERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEF--FTFLRRNKRFPNDVG 133

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
            FY ++I+   E+L ++ I YRDLKPEN+L+ + G + +TDF  ++ +  +T
Sbjct: 134 CFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRT 185

Length = 340

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 44/156 (28%), Positives = 91/156 (58%), Gaps = 10/156 (6%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  ++   +K++G+GA G V LV  +    +++  +A+K++ K  +  +  ++    WE 
Sbjct: 40  MKAEDFDVIKVIGRGAFGEVQLVRHK----SSKQVYAMKLLSKFEMIKR--SDSAFFWEE 93

Query: 75  R-VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           R +++  +  ++ +L  + + D++L   + Y PGGDL  L    ++        RFY +E
Sbjct: 94  RDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNL---MSNYDIPEKWARFYTAE 150

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           ++ A++ +H+MG  +RD+KP+N+L+ +SGH+ L DF
Sbjct: 151 VVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 186

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 7/125 (5%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-- 301
           R+ +  GT EY++PE++   GH  A DWW LGI  YE+L G  PF        ++ +L  
Sbjct: 184 RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEG 243

Query: 302 -MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRW-DLLTDVLR 358
            +  P+F+        L+++LL  D  KR G L +GA  +KEH +F  + W  LL   + 
Sbjct: 244 IIYFPKFLD--NNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLLHKNVE 301

Query: 359 PPFIP 363
            P+ P
Sbjct: 302 VPYKP 306

Length = 340

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 78.9 bits (194), Expect = 3e-16
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           +++G+G+   V LV  +  D      +A+KVV K  +H   + +   + E  V  + S +
Sbjct: 1   RVIGRGSYAKVLLVRLKKNDQI----YAMKVVKKELVHDDEDIDW-VQTEKHVFEQASSN 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL  L    +T   L   + Y  GGDL  + + Q  R       RFY +EI  A+  LH
Sbjct: 56  PFLVGLHSCFQTTSRLFLVIEYVNGGDL--MFHMQRQRKLPEEHARFYAAEICIALNFLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             GI YRDLK +N+L+   GH+ LTD+ + +
Sbjct: 114 ERGIIYRDLKLDNVLLDADGHIKLTDYGMCK 144

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 79.1 bits (195), Expect = 3e-16
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L +LGKG+ G V L   +  D      +A+K++ K  +    + E     E RVL+    
Sbjct: 5   LMVLGKGSFGKVMLAERKGTDEL----YAIKILKKDVIIQDDDVEC-TMVEKRVLALPGK 59

Query: 83  P-FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P FL +L    +T + L + + Y  GGDL +   +Q  + F      FY +EI   +  L
Sbjct: 60  PPFLTQLHSCFQTMDRLYFVMEYVNGGDL-MYHIQQVGK-FKEPHAVFYAAEIAIGLFFL 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+ GI YRDLK +N+++   GH+ + DF + +
Sbjct: 118 HSKGIIYRDLKLDNVMLDAEGHIKIADFGMCK 149

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 77.7 bits (191), Expect = 4e-16
 Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKG  G V     RA        +A K ++K  +  K + E  A  E R+L +++  
Sbjct: 6   RVLGKGGFGEVCACQVRATGKM----YACKKLEKKRIK-KRKGEAMALNEKRILEKVNSR 60

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           F+  L  + ET + L   +    GGDL    Y   +  F      FY +E+ C +E L  
Sbjct: 61  FVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQR 120

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLS 172
             I YRDLKPENIL+   GH+ ++D  L+
Sbjct: 121 ERIVYRDLKPENILLDDRGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 78.9 bits (194), Expect = 5e-16
 Identities = 43/153 (28%), Positives = 89/153 (58%), Gaps = 10/153 (6%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-V 76
           ++   +K++G+GA G V LV  +++       +A+K++ K  +  + ++     WE R +
Sbjct: 43  EDYDVVKVIGRGAFGEVQLVRHKSSQKV----YAMKLLSKFEMIKRSDSA--FFWEERDI 96

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           ++  + P++ +L  + + D++L   + Y PGGDL  L    +         +FY +E++ 
Sbjct: 97  MAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYD---VPEKWAKFYTAEVVL 153

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           A++ +H+MG+ +RD+KP+N+L+ + GH+ L DF
Sbjct: 154 ALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADF 186

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS-RLSH 82
           K+LGKG+ G V L   +         FA+K + K  +    + E     E RVL+    +
Sbjct: 1   KVLGKGSFGKVLLAELKGKGEY----FAVKALKKDVVLIDDDVEC-TMVEKRVLALAWEN 55

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           PFL  L  + +T E L + + +  GGDL  + + Q+   F      FY +EI+C ++ LH
Sbjct: 56  PFLTHLYCTFQTKEHLFFVMEFLNGGDL--MFHIQDKGRFDLYRATFYAAEIVCGLQFLH 113

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + GI YRDLK +N+++ + GH+ + DF + +
Sbjct: 114 SKGIIYRDLKLDNVMLDRDGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP 305
            + VGT  Y+SPE+ +   + +  D W+LG + YE+     PF G+N  E    +L    
Sbjct: 161 KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQY 220

Query: 306 EFVGQR--TALTDLIQRLLEKDPVKR 329
             +  +  + L +L+  LL+KDP +R
Sbjct: 221 PPIPSQYSSELRNLVSSLLQKDPEER 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 12/153 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +  K L+ +G+GA G V+   DRA         A+K +       + + +     EI ++
Sbjct: 19  ELYKNLEKIGEGASGEVYKATDRATG----KEVAIKKMR-----LRKQNKELIINEILIM 69

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIIC 136
               HP +     S    + L   + Y  GG L +++   QN    +   I +   E++ 
Sbjct: 70  KDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIIT--QNFVRMNEPQIAYVCREVLQ 127

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
            +E+LH+  + +RD+K +NIL+ + G V L DF
Sbjct: 128 GLEYLHSQNVIHRDIKSDNILLSKDGSVKLADF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 75.8 bits (186), Expect = 1e-15
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 7/159 (4%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+++G+G+ G   LV    +D      +A+K +    L     A   +R E  +L+++ H
Sbjct: 5   LRVVGEGSFGRALLVQHVNSDQK----YAMKEI---RLPKSSSAVEDSRKEAVLLAKMKH 57

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P +     S E D  L   + YC GGDL      Q  ++F    I  +  ++   ++H+H
Sbjct: 58  PNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH 117

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
              + +RD+K +NI + Q+G V L DF  +R L    A+
Sbjct: 118 EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY 156

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 72/350 (20%), Positives = 125/350 (35%), Gaps = 119/350 (34%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWEIRVLSR 79
           +  +G+G  G V+    +A +       ALK +        +E E     A  EI++L +
Sbjct: 4   IAQIGEGTYGQVY----KARNKKTGELVALKKIRME-----NEKEGFPITAIREIKLLQK 54

Query: 80  LSHPFLPKL----LGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFYLSEI 134
           L HP + +L        +   ++ +   Y    DL  +L   +    F+ S I+ Y+ ++
Sbjct: 55  LRHPNIVRLKEIVTSKGKGSIYMVF--EYMDH-DLTGLLDSPEVK--FTESQIKCYMKQL 109

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
           +  +++LH+ GI +RD+K  NILI   G + L DF L+R   K+         N      
Sbjct: 110 LEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKR---NSADYTN------ 160

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
                     R++T W                                           Y
Sbjct: 161 ----------RVITLW-------------------------------------------Y 167

Query: 255 VSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN--------------------- 292
             PE++ G       VD W++G +  E+  G   F+G                       
Sbjct: 168 RPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWP 227

Query: 293 ------------RKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
                        K+ ++  L +  + +   +AL DL+ +LL  DP KR+
Sbjct: 228 GVSKLPWFENLKPKKPYKRRLREFFKHLIDPSAL-DLLDKLLTLDPKKRI 276

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +K +G+G+ G   LV  +         + +K ++ S +  K   E  +R E+ VLS + H
Sbjct: 5   VKKIGEGSFGKAILVKSK----EDGKQYVIKEINISKMSPKEREE--SRKEVAVLSNMKH 58

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + +   S E +  L   + YC GGDL      Q   +F    I  +  +I  A++H+H
Sbjct: 59  PNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH 118

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +  I +RD+K +NI + + G + L DF ++R L
Sbjct: 119 DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVL 151

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 75.4 bits (185), Expect = 2e-15
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 26/163 (15%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDK---------STLHAKHEAERRARWEIRV 76
           LGKG+ GTV+LV D+ A    R    LKV+ +          T+ A  EA+        +
Sbjct: 8   LGKGSFGTVYLVKDKKAVAEER----LKVLKEIPVGELNPNETVQANQEAQ--------L 55

Query: 77  LSRLSHPFLPKLLGS-LETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSE 133
           LS+L HP + K   S LE D F      YC G DL+  +   K   +  S + +  +  +
Sbjct: 56  LSKLDHPAIVKFHASFLERDAFCI-ITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQ 114

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
           ++  + ++H   I +RDLK +NI ++ +  + + DF +SR L+
Sbjct: 115 LLLGVHYMHQRRILHRDLKAKNIFLKNN-LLKIGDFGVSRLLM 156

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           + K LK LGKG+ G+V+ V  R +D      +ALK VD  ++  K   +  A  EIR+L+
Sbjct: 1   DFKVLKKLGKGSYGSVYKV-KRLSDNQF---YALKEVDLGSMSQKERED--AVNEIRILA 54

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSEIIC 136
            ++HP +     +      L   + Y P GDL+  + + K+  ++     I     +++ 
Sbjct: 55  SVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLR 114

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            ++ LH   I +RDLK  NIL+  +  V + D  +S+ L K  A
Sbjct: 115 GLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMA 158

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 74/350 (21%), Positives = 120/350 (34%), Gaps = 110/350 (31%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWEI 74
           +  + L ++G+GA G V    ++A   T        +V         + E   + A  E+
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKA---TGE------IVAIKKFKESEDDEDVKKTALREV 51

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           +VL +L H  +  L  +      L     Y     L +L          P  +R Y+ ++
Sbjct: 52  KVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEASPGG--LPPDAVRSYIWQL 109

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
           + AI + H+  I +RD+KPENIL+ +SG + L DF  +R L  + A              
Sbjct: 110 LQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPA-------------S 156

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
           P+T+       + TRW                                           Y
Sbjct: 157 PLTD------YVATRW-------------------------------------------Y 167

Query: 255 VSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKN--------------------- 292
            +PE++ GD  +   VD WA+G +  E+L G   F G +                     
Sbjct: 168 RAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQE 227

Query: 293 ------RKETFRNVLMKTPEFVGQRTA------LTDLIQRLLEKDPVKRL 330
                 R           PE + +R          D ++  L  DP +RL
Sbjct: 228 LFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERL 277

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 20/165 (12%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-----PFALKVVDKSTLHAKHEAERRARW 72
           D+ + ++++G GA   V+          A C       A+K +D        +  R+   
Sbjct: 1   DDYELIEVIGVGATAVVY---------AAICLPNNEKVAIKRIDLEKCQTSVDELRK--- 48

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGD-LNVLRYKQNDRVFSPSVIRFY 130
           E++ +S+ +HP + K   S    + L W V PY  GG  L++++          ++I   
Sbjct: 49  EVQAMSQCNHPNVVKYYTSFVVGDEL-WLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATV 107

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           L E++  +E+LH+ G  +RD+K  NIL+ + G V + DF +S +L
Sbjct: 108 LKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASL 152

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER-RARWEIRVLSR 79
           K +K LG G  G+V+L  ++          A+K + K   ++  E    R   E++ L +
Sbjct: 2   KVIKQLGDGTFGSVYLARNKETGEL----VAIKKM-KKKFYSWEECMNLR---EVKSLRK 53

Query: 80  L-SHPFLPKLLGS-LETDEFLAWAVPYCPGGDLNVLRY--KQNDRVFSPSVIRFYLSEII 135
           L  HP + KL     E DE L +   Y    + N+ +    +  + FS SVIR  + +I+
Sbjct: 54  LNEHPNIVKLKEVFRENDE-LYFVFEYM---EGNLYQLMKDRKGKPFSESVIRSIIYQIL 109

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             + H+H  G  +RDLKPEN+L+     V + DF L+R
Sbjct: 110 QGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 75.1 bits (184), Expect = 6e-15
 Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 14/135 (10%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRG--DG---HEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           D   +S+  VGT +Y+SPE+++   DG   +    DWW+LG+  YEMLYG TPF  ++  
Sbjct: 155 DGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLV 214

Query: 295 ETFRNVLMKTP--EFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ET+  ++      +F  Q T ++    DLI+RL+      RLG   G  + K+H FF G+
Sbjct: 215 ETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSRE-HRLGQ-NGIEDFKQHPFFTGI 272

Query: 349 RWDLLTDVLRPPFIP 363
            WD + +    P+IP
Sbjct: 273 DWDNIRNC-EAPYIP 286

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 74.1 bits (182), Expect = 6e-15
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVV--DKSTLHAKHEAERRARWEIRV 76
           N +  K+LG+GA G V+L +D   D T R   A+K V  D  +   K E       EI++
Sbjct: 3   NWRRGKLLGQGAFGRVYLCYD--VD-TGR-ELAVKQVPFDPDSPETKKEV-NALECEIQL 57

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L H  + +  G L  DE L+  + Y PGG  +V    +     + +V R Y  +I+ 
Sbjct: 58  LKNLQHERIVQYYGCLRDDETLSIFMEYMPGG--SVKDQLKAYGALTETVTRKYTRQILE 115

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            +E+LH+  I +RD+K  NIL   +G+V L DF  S+ L
Sbjct: 116 GVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRL 154

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 74.7 bits (183), Expect = 8e-15
 Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ + +K++G+GA G V +V  +  +      +A+K+++K  +  + E     R E  VL
Sbjct: 1   DDFEIIKVIGRGAFGEVAVVKMKHTERI----YAMKILNKWEMLKRAETAC-FREERNVL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
                 ++  L  + + + +L   + Y  GGDL  L  K  DR+    + RFY++E++ A
Sbjct: 56  VNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRL-PEDMARFYIAEMVLA 114

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           I  +H +   +RD+KP+N+L+  +GH+ L DF
Sbjct: 115 IHSIHQLHYVHRDIKPDNVLLDMNGHIRLADF 146

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL-HAKHEAERRARWEIRVLSRLS 81
            K LG+G    V+   D+    T R   A+K +       AK      A  EI++L  L 
Sbjct: 5   GKKLGEGTYAVVYKARDKE---TGRI-VAIKKIKLGERKEAKDGINFTALREIKLLQELK 60

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           HP +  LL        +     +    DL  +  K    V +P+ I+ Y+   +  +E+L
Sbjct: 61  HPNIIGLLDVFGHKSNINLVFEFMET-DLEKV-IKDKSIVLTPADIKSYMLMTLRGLEYL 118

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  I +RDLKP N+LI   G + L DF L+R
Sbjct: 119 HSNWILHRDLKPNNLLIASDGVLKLADFGLAR 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 15/159 (9%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVV-----DKSTLHAKHEAERRARWEIRVLS 78
           ++LG G+ G+V+   +          FA+K V      ++   A  + E+    EI +LS
Sbjct: 6   ELLGSGSFGSVYEGLNLDDGDF----FAVKEVSLADDGQTGQEAVKQLEQ----EIALLS 57

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           +L HP + + LG+   ++ L   +   PGG L  L  K+      P VIR Y  +I+  +
Sbjct: 58  KLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKL-LKKYGSFPEP-VIRLYTRQILLGL 115

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
           E+LH+    +RD+K  NIL+  +G V L DF +++ +V+
Sbjct: 116 EYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE 154

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 72.3 bits (177), Expect = 2e-14
 Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH-EAERRARWEIRVL 77
             + +K +G+G+ G ++L   ++   +  C   +K +D + +  K  EA ++   E+ +L
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKS--DSEHC--VIKEIDLTKMPVKEKEASKK---EVILL 53

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +++ HP +     S + +  L   + YC GGDL     +Q   +FS   I  +  +I   
Sbjct: 54  AKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLG 113

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLSRNLVKKTAF 181
           ++H+H+  I +RD+K +NI + ++G V  L DF ++R L      
Sbjct: 114 LKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMEL 158

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 72.7 bits (178), Expect = 3e-14
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 8/152 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L +LGKG+ G V L   +  D      +A+K++ K  +    + E     E RVL+    
Sbjct: 5   LMVLGKGSFGKVMLAERKGTDEL----YAIKILKKDVVIQDDDVEC-TMVEKRVLALSGK 59

Query: 83  P-FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P FL +L    +T + L + + Y  GGDL + + +Q  R   P  + FY +EI   +  L
Sbjct: 60  PPFLTQLHSCFQTMDRLYFVMEYVNGGDL-MYQIQQVGRFKEPHAV-FYAAEIAIGLFFL 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+ GI YRDLK +N+++   GH+ + DF + +
Sbjct: 118 HSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK 149

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
             L+ +GKG+ G V+    +A D       A+KV+D     A+ E E   + EI+ LS+ 
Sbjct: 4   TLLECIGKGSFGEVY----KAIDKRTNQVVAIKVIDLE--EAEDEIEDIQQ-EIQFLSQC 56

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
             P++ K  GS      L   + YC GG  L++L+          + I F L E++  +E
Sbjct: 57  RSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKP----GKLDETYIAFILREVLLGLE 112

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDF----DLSRNLVKKTAF 181
           +LH  G  +RD+K  NIL+ + G V L DF     L+  + K+  F
Sbjct: 113 YLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTF 158

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV-----DKSTLHAKHEAERRARWEIRVL 77
              +G G  G V+     A +       A+K +     D  T+    +       E++VL
Sbjct: 5   GNKIGGGTFGKVY----TAVNLDTGELMAVKEIRIQDNDPKTIKEIAD-------EMKVL 53

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIIC 136
             L HP L K  G     E +   + YC GG L  +L +    R+    VIR Y  +++ 
Sbjct: 54  ELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHG---RILDEHVIRVYTLQLLE 110

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
            + +LH+ GI +RD+KP NI +  +G + L DF  +  L   T
Sbjct: 111 GLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNT 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           ++ +G G  G V+   D A         A+KV+    L    + E   + EI +L    H
Sbjct: 8   IQRIGSGTYGDVYKARDIATGELV----AIKVI---KLEPGDDFEI-IQQEISMLKECRH 59

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P +    GS    + L   + YC GG L  + Y+      S   I +   E +  + +LH
Sbjct: 60  PNIVAYFGSYLRRDKLWIVMEYCGGGSLQDI-YQVTRGPLSELQIAYVCRETLKGLAYLH 118

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDF----DLSRNLVKKTAF 181
             G  +RD+K  NIL+ + G V L DF     L+  + K+ +F
Sbjct: 119 ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSF 161

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 9/160 (5%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+L+ L  LG G  G V  V  R   PT +   A+K +    L      +++   E+ +L
Sbjct: 1   DDLEYLGELGAGNSGVVSKVLHR---PTGKI-MAVKTI---RLEINEAIQKQILRELDIL 53

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
            + + P++    G+   +  ++  + Y  GG L+ +  K+        ++      ++  
Sbjct: 54  HKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKI-LKEVQGRIPERILGKIAVAVLKG 112

Query: 138 IEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
           + +LH    I +RD+KP NIL+   G + L DF +S  LV
Sbjct: 113 LTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLV 152

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 72.0 bits (176), Expect = 4e-14
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 11/153 (7%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSRLSHPF 84
           LG GA G V+   ++     A    A KV++      K E E      EI +L+  +HP+
Sbjct: 20  LGDGAFGKVYKAKNKETGALA----AAKVIE-----TKSEEELEDYMVEIEILATCNHPY 70

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
           + KLLG+   D  L   + +CPGG ++ +  +  DR  +   I+    +++ A+++LH+M
Sbjct: 71  IVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLHSM 129

Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
            I +RDLK  N+L+   G + L DF +S   VK
Sbjct: 130 KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVK 162

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 46/156 (29%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVD-KSTLHAKHEAERRA-----RWEIRVL 77
           +++GKG  G V+L    A + T     A+K V+  +T+  +H++ ++      R EI  L
Sbjct: 7   ELIGKGTYGRVYL----ALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETL 62

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
             L H  + + LG   T+E+L+  + Y PGG +     +   R F   ++RF+  +++  
Sbjct: 63  KDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSC-LRTYGR-FEEQLVRFFTEQVLEG 120

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + +LH+ GI +RDLK +N+L+   G   ++DF +S+
Sbjct: 121 LAYLHSKGILHRDLKADNLLVDADGICKISDFGISK 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 72.0 bits (176), Expect = 6e-14
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L +LGKG+ G V L   +  D      +A+K++ K  +    + E     E RVL+    
Sbjct: 5   LMVLGKGSFGKVMLAERKGTDEL----YAIKILKKDVVIQDDDVEC-TMVEKRVLALQDK 59

Query: 83  P-FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P FL +L    +T + L + + Y  GGDL +   +Q  +   P  + FY +EI   +  L
Sbjct: 60  PPFLTQLHSCFQTVDRLYFVMEYVNGGDL-MYHIQQVGKFKEPQAV-FYAAEISVGLFFL 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H  GI YRDLK +N+++   GH+ + DF + +
Sbjct: 118 HRRGIIYRDLKLDNVMLDSEGHIKIADFGMCK 149

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 71.5 bits (175), Expect = 6e-14
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +G+      GT  Y++PE+++ + + + VDW+A+G   YEM+ G TPF+    K     +
Sbjct: 147 DGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEEL 206

Query: 301 LMKT--PEFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL- 353
             +T   E   +    T    D+ +  L K P  RLG      + ++H FFK + +  L 
Sbjct: 207 KRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTINFPRLE 266

Query: 354 TDVLRPPFIP 363
             ++ PPF+P
Sbjct: 267 AGLIPPPFVP 276

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 70.9 bits (174), Expect = 8e-14
 Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L N K  K +GKG    V+    +A         ALK V    +    +A +    EI +
Sbjct: 1   LGNFKIEKKIGKGQFSVVY----KAICLLDGRVVALKKVQIFEMMDA-KARQDCLKEIDL 55

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVL--RYKQNDRVFSPSVIRFYLSEI 134
           L +L HP + K L S   +  L   +     GDL+ +   +K+  R+     I  Y  ++
Sbjct: 56  LKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQL 115

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             A+EH+H+  I +RD+KP N+ I  +G V L D  L R    KT
Sbjct: 116 CSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 160

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 80/322 (24%), Positives = 139/322 (43%), Gaps = 67/322 (20%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           ++++GKG MG V+L +D    P      ALK + +         +R  R E ++ + L H
Sbjct: 7   IRLIGKGGMGEVYLAYD----PVCSRRVALKKIREDLSENPLLKKRFLR-EAKIAADLIH 61

Query: 83  P-FLPKLLGSLETD-EFLAWAVPYCPGGDLNVL--RYKQNDRVFSP-----SVIRFY--L 131
           P  +P  + S+ +D + + + +PY  G  L  L     Q + +        SV  F    
Sbjct: 62  PGIVP--VYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIF 119

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
            +I   IE++H+ G+ +RDLKP+NIL+   G V + D+  +  + KK   E++ L +   
Sbjct: 120 HKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAA--IFKKL--EEEDLLDIDV 175

Query: 192 PVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT 251
                  N                        T   ++                   VGT
Sbjct: 176 DE----RNICYSSM------------------TIPGKI-------------------VGT 194

Query: 252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKTPEFVGQ 310
            +Y++PE + G     + D +ALG++ Y+ML  + P+R K  RK ++R+V++   E    
Sbjct: 195 PDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPY 254

Query: 311 R---TALTDLIQRLLEKDPVKR 329
           R     L+ +  + L  DP +R
Sbjct: 255 REIPPFLSQIAMKALAVDPAER 276

Length = 932

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +GKG+ G VF V  R AD      +A+K +D S ++ +   E  A  E RVL++L  
Sbjct: 5   LNKIGKGSFGVVFKVV-RKADKRV---YAMKQIDLSKMNRREREE--AIDEARVLAKLDS 58

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI-RFYLSEIICAIEHL 141
            ++ +   S      L   + Y   GDL+ L   Q  R      + RF++ +I+  + HL
Sbjct: 59  SYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFI-QILLGLAHL 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
           H+  I +RD+K  N+ +    +V + D  +++ L   T F  
Sbjct: 118 HSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFAN 159

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS- 81
           ++++G+G  G V+    +          A+K+     +    + E   + E  +L + S 
Sbjct: 11  VEVIGEGTYGKVYKARHKKTGQLV----AIKI-----MDIIEDEEEEIKEEYNILRKYSN 61

Query: 82  HPFLPKLLG-----SLETDEFLAWAV-PYCPGG---DLNVLRYKQNDRVFSPSVIRFYLS 132
           HP +    G     +   ++   W V   C GG   DL V   ++  +      I + L 
Sbjct: 62  HPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDL-VKGLRKKGKRLKEEWIAYILR 120

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           E +  + +LH   + +RD+K +NIL+ ++  V L DF +S  L
Sbjct: 121 ETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQL 163

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSR 79
           + L+ +GKG+ GTV  V  ++           K +D   +    E E++    E+ +L  
Sbjct: 3   EVLETIGKGSFGTVRKVRRKSDGKI----LVWKEIDYGNMT---EKEKQQLVSEVNILRE 55

Query: 80  LSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVL--RYKQNDRVFSPSVIRFYLSEII 135
           L HP + +    +   +++ L   + YC GGDL  L  + K+  +      I   L++++
Sbjct: 56  LKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLL 115

Query: 136 CAIEHLHN-----MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
            A+   HN       + +RDLKP NI +  + +V L DF L++ L   ++F K
Sbjct: 116 LALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAK 168

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG GA G V+    +     A    A K++    + ++ E E     EI +LS   HP +
Sbjct: 13  LGDGAFGKVYKAQHKETGLFA----AAKIIQ---IESEEELEDFMV-EIDILSECKHPNI 64

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
             L  +   +  L   + +C GG L+ +  +  +R  +   IR+   +++ A+  LH+  
Sbjct: 65  VGLYEAYFYENKLWILIEFCDGGALDSIMLEL-ERGLTEPQIRYVCRQMLEALNFLHSHK 123

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLS 172
           + +RDLK  NIL+   G V L DF +S
Sbjct: 124 VIHRDLKAGNILLTLDGDVKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 68.9 bits (168), Expect = 4e-13
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK-STLHAKHEAERRARWEIR 75
           L N +  K +G+G    V+    RA     R P ALK V     + AK  A +    EI 
Sbjct: 1   LANFQIEKKIGRGQFSEVY----RATCLLDRKPVALKKVQIFEMMDAK--ARQDCVKEID 54

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSE 133
           +L +L+HP + K L S   D  L   +     GDL+  +  +K+  R+     +  Y  +
Sbjct: 55  LLKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQ 114

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +  A+EH+H+  + +RD+KP N+ I  +G V L D  L R    KT
Sbjct: 115 LCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 160

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 10/160 (6%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEIRV 76
            +LK +K LG+G  G V L      DP          V KS  H+  E  R     EI +
Sbjct: 4   RHLKFIKQLGEGHFGKVELCR---YDPLGDNTGEQVAV-KSLNHSGEEQHRSDFEREIEI 59

Query: 77  LSRLSHPFLPKLLGSLETDEF--LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           L  L H  + K  G  E      L   + Y P G L     +  D++    ++ F  S  
Sbjct: 60  LRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLF--SSQ 117

Query: 135 IC-AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           IC  +++L +    +RDL   NIL+     V ++DF L++
Sbjct: 118 ICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAK 157

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 244 RSNSFVGTEEYVSPEVVR---GDGHE-FAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           R ++ VGT +Y+SPEV++   GDG+     DWW++G+  +EML G TPF   +   T+  
Sbjct: 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSK 258

Query: 300 VL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD 351
           ++     +  PE V       +LI   L    V RLG   G  EIK+H FFK  +W+
Sbjct: 259 IMDHKNSLNFPEDVEISKHAKNLICAFLTDREV-RLGR-NGVEEIKQHPFFKNDQWN 313

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 71/288 (24%), Positives = 110/288 (38%), Gaps = 70/288 (24%)

Query: 51  ALKVVDKSTLHAKHEAER-RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGG 108
           A+K++   T   + E +R R R E  + +RL HP +  LL S E    L +AV  Y PG 
Sbjct: 7   AIKLL--RTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVPGR 64

Query: 109 DL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---HV 164
            L  VL     D           + +++ A+   HN GI +RDLKP+NI++ Q+G   H 
Sbjct: 65  TLREVL---AADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHA 121

Query: 165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKT 224
            + DF +                     +LP   +       LTR               
Sbjct: 122 KVLDFGIG-------------------TLLPGVRDADVAT--LTR--------------- 145

Query: 225 KSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYG 284
                               +   +GT  Y +PE +RG+      D +A G++  E L G
Sbjct: 146 --------------------TTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTG 185

Query: 285 TTPFRGKNRKETFRNVLMKTPEFVGQRTA---LTDLIQRLLEKDPVKR 329
               +G +  E     L      +    A   L  ++++ L KDP +R
Sbjct: 186 QRVVQGASVAEILYQQLSPVDVSLPPWIAGHPLGQVLRKALNKDPRQR 233

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 11/167 (6%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EI 74
           L N +  K +G+G    V+    RA       P ALK V    L    +A+ RA    EI
Sbjct: 1   LANFRIEKKIGRGQFSEVY----RATCLLDGVPVALKKVQIFDLM---DAKARADCIKEI 53

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLS 132
            +L +L+HP + K   S   D  L   +     GDL+  +  +K+  R+     +  Y  
Sbjct: 54  DLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFV 113

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           ++  A+EH+H+  + +RD+KP N+ I  +G V L D  L R    KT
Sbjct: 114 QLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 160

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 15/169 (8%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           + +  L  LG+GA G+V     +    T    FALK +         +   R   E+ + 
Sbjct: 1   EKIVELSRLGEGAGGSVTKCRLK---NTGMI-FALKTITTDPNPDLQKQILR---ELEIN 53

Query: 78  SRLSHPFLPKLLGS--LETDEFLAWAVPYCPGGDLNVLRYK----QNDRVFSPSVIRFYL 131
                P++ K  G+   E+   +  A+ YC GG L+ + YK    +  R+    V+    
Sbjct: 54  KSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSI-YKKVKKRGGRI-GEKVLGKIA 111

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
             ++  + +LH+  I +RD+KP NIL+ + G V L DF +S  LV   A
Sbjct: 112 ESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA 160

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 34/168 (20%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKV---VDKSTLHAKHEAERRARWEIRVL 77
           + LK +G GA G V    D+          A+K    V    + AK     R   EI++L
Sbjct: 3   ELLKPIGSGAYGVVCSAVDKRTGR----KVAIKKISNVFDDLIDAK-----RILREIKLL 53

Query: 78  SRLSHPFLPKL---LGSLETDEFLAWAVPYCPGGDLN-VLRYKQND--RVF-SPSV---- 126
             L H  +  L   L     ++F           D+  V    + D  +V  SP      
Sbjct: 54  RHLRHENIIGLLDILRPPSPEDF----------NDVYIVTELMETDLHKVIKSPQPLTDD 103

Query: 127 -IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            I+++L +I+  +++LH+  + +RDLKP NIL+  +  + + DF L+R
Sbjct: 104 HIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 80/326 (24%), Positives = 125/326 (38%), Gaps = 95/326 (29%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER-RARWEIRVL----- 77
           ++LG GA GTV L   R +D     PFA+KVVD   +    EA++ RA+ E+  L     
Sbjct: 38  RVLGSGATGTV-LCAKRVSDGE---PFAVKVVD---MEGMSEADKNRAQAEVCCLLNCDF 90

Query: 78  ---SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLS 132
               +    F  K   + E    +A  + Y   GDL   +    + +R F          
Sbjct: 91  FSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFI 150

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           +++ A+ H+H+  + +RD+K  NIL+  +G V L DF                       
Sbjct: 151 QVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDF----------------------- 187

Query: 193 VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                                      G  K  +A VS            +   +F GT 
Sbjct: 188 ---------------------------GFSKMYAATVS-----------DDVGRTFCGTP 209

Query: 253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--------- 303
            YV+PE+ R   +    D ++LG+L YE+L    PF G+N +E     L           
Sbjct: 210 YYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSI 269

Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKR 329
           +PE       + +++  LL  DP +R
Sbjct: 270 SPE-------MQEIVTALLSSDPKRR 288

Length = 496

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVV---DKSTLHAKHEAERRARW 72
           + D      +LGKG  G V+     A D + +   A+K +   D   +   HE       
Sbjct: 6   EYDENGERVVLGKGTYGIVY----AARDLSTQVRIAIKEIPERDSRYVQPLHE------- 54

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFYL 131
           EI + S L H  + + LGS   + F    +   PGG L+ +LR K      +   I FY 
Sbjct: 55  EIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYT 114

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFDLSRNL 175
            +I+  +++LH+  I +RD+K +N+L+   SG V ++DF  S+ L
Sbjct: 115 KQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRL 159

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 31/167 (18%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVD---------KSTLHAKHEAERRARWE 73
           L  +G+GA GTV+    +A D       ALK V           STL            E
Sbjct: 4   LAEIGEGAYGTVY----KARDLNTGRFVALKKVRVPLSEEGIPLSTLR-----------E 48

Query: 74  IRVLSRL---SHPFLPKLL----GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV 126
           I +L +L    HP + +LL    G     E     V      DL     K       P  
Sbjct: 49  IALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPET 108

Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           I+  + +++  ++ LH+  I +RDLKP+NIL+   G V + DF L+R
Sbjct: 109 IKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLAR 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 61.5 bits (150), Expect = 9e-11
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 22/117 (18%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR--------- 289
             + +  N+ VGT  +++PEV+ G  +++  D W+LGI   E+  G  P+          
Sbjct: 148 LSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALF 207

Query: 290 --GKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
               N     RN    + EF        D +++ L+K+P KR      A ++ +H F
Sbjct: 208 KIATNGPPGLRNPEKWSDEFK-------DFLKKCLQKNPEKRP----TAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 16/106 (15%)

Query: 250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR-NVLM----KT 304
           GT +Y SPE ++G  ++ + DWWA+G+LTYE+L G  PF+ ++  E      L+    K 
Sbjct: 168 GTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFK-EDEDEELDLESLLKRQQKK 226

Query: 305 PEFVGQR-TALTDLIQRLLEKDPVKRLGYLRGAC---EIKEHVFFK 346
             F+        D +Q +L+ +   RL          EI +H F K
Sbjct: 227 LPFIKNVSKNANDFVQSMLKYNINYRL------TNYNEIIKHPFLK 266

Length = 267

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  + ++ +GKG  G VF V ++     A    A+K++D       H+ +     E  +L
Sbjct: 18  DTWEIIETIGKGTYGKVFKVLNKKNGSKA----AVKILDPI-----HDIDEEIEAEYNIL 68

Query: 78  SRLS-HPFLPKLLG-----SLETDEFLAWAVPYCPGG---DLNVLRYKQNDRVFSPSVIR 128
             LS HP + K  G      ++  + L   +  C GG   DL     K+ +R+  P +I 
Sbjct: 69  KALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEP-IIA 127

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + L E +  ++HLH     +RD+K  NIL+   G V L DF +S  L
Sbjct: 128 YILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQL 174

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           +++  +ILG G  GTV+    +A     R   A+KV+    L    E +++   E+ +L 
Sbjct: 2   DIQYQEILGHGNGGTVY----KAYHLLTRRILAVKVI---PLDITVELQKQIMSELEILY 54

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           +   P++    G+   +  ++    +  GG L+V R     ++    + R  ++ ++  +
Sbjct: 55  KCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVYR-----KIPEHVLGRIAVA-VVKGL 108

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            +L ++ I +RD+KP N+L+   G V L DF +S  LV   A
Sbjct: 109 TYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIA 150

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 30/186 (16%)

Query: 5   PPPQPQTTPS-------------LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFA 51
           PPP   ++ S               L  L+ +  +G GA GTV+ V  R   PT R  +A
Sbjct: 48  PPPSSSSSSSSSSSASGSAPSAAKSLSELERVNRIGSGAGGTVYKVIHR---PTGR-LYA 103

Query: 52  LKVVDKSTLHAKHE--AERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD 109
           LKV     ++  HE    R+   EI +L  ++HP + K     + +  +   + +  GG 
Sbjct: 104 LKV-----IYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGS 158

Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           L        D  F   V R    +I+  I +LH   I +RD+KP N+LI  + +V + DF
Sbjct: 159 LEGTHI--ADEQFLADVAR----QILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADF 212

Query: 170 DLSRNL 175
            +SR L
Sbjct: 213 GVSRIL 218

Length = 353

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 9/155 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEIRVLSRLS 81
           ++++GKG+ G V LV  R             V+ K  L      ER+A   E ++LS+L 
Sbjct: 5   VRVVGKGSYGEVSLVRHRTDGKQY-------VIKKLNLRNASRRERKAAEQEAQLLSQLK 57

Query: 82  HPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
           HP +     S E ++ L + V  +C GGDL     +Q  ++   + +  +  +I  A+++
Sbjct: 58  HPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQY 117

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           LH   I +RDLK +N+ + ++  + + D  ++R L
Sbjct: 118 LHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 73/225 (32%)

Query: 73  EIRVLSRLS-HPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDR-VFSPSVIR 128
           EI+ L RLS HP + +L+  L       LA         D+N+    +  +       ++
Sbjct: 47  EIQALRRLSPHPNILRLIEVLFDRKTGRLALV---FELMDMNLYELIKGRKRPLPEKRVK 103

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
            Y+ +++ +++H+H  GI +RD+KPENILI+    + L DF   R       + K     
Sbjct: 104 SYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCR-----GIYSKP---- 153

Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
                 P TE       I TRW                                      
Sbjct: 154 ------PYTE------YISTRW-------------------------------------- 163

Query: 249 VGTEEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKN 292
                Y +PE +  DG +   +D WA+G + +E+L     F G N
Sbjct: 164 -----YRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTN 203

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP 305
            ++VGT  Y+SPE +    ++   D W+LG L YE+   + PF  +N+ +    +  K  
Sbjct: 168 KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKI--KEG 225

Query: 306 EF----VGQRTALTDLIQRLLEKDPVKR 329
           +F        + L ++I+ +L  DP KR
Sbjct: 226 KFRRIPYRYSSELNEVIKSMLNVDPDKR 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 64/326 (19%), Positives = 119/326 (36%), Gaps = 89/326 (27%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALK-VVDKSTLHAKHEAERRARWEIRV 76
              K ++ +G GA G V      A D  +    A+K +     +     A+R  R E+++
Sbjct: 5   SRYKPIENIGSGAYGVVC----SAIDTRSGKKVAIKKIPHAFDVPTL--AKRTLR-ELKI 57

Query: 77  LSRLSHP--------FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           L    H           P   G+   D ++   V      DL+ + +       +   IR
Sbjct: 58  LRHFKHDNIIAIRDILRPP--GADFKDVYV---VMDLMESDLHHIIHSDQP--LTEEHIR 110

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
           ++L +++  ++++H+  + +RDLKP N+L+ +   + + DF ++R L             
Sbjct: 111 YFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS---------- 160

Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
                      P  H+  +T                                       +
Sbjct: 161 -----------PTEHKYFMT--------------------------------------EY 171

Query: 249 VGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL----MK 303
           V T  Y +PE++     +  A+D W++G +  EML     F GKN     + +L      
Sbjct: 172 VATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSP 231

Query: 304 TPEFVGQRTA--LTDLIQRLLEKDPV 327
           + E + +  +  +   IQ L  K PV
Sbjct: 232 SEEVLNRIGSDRVRKYIQNLPRKQPV 257

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 9/158 (5%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           LK +K+LG GA GTV+           + P A+KV+ ++T     +A +    E  V++ 
Sbjct: 9   LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT---SPKANKEILDEAYVMAG 65

Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +  P++ +LLG   T   + +   +PY  G  L+ +R +  DR+ S  ++ + + +I   
Sbjct: 66  VGSPYVCRLLGICLTSTVQLVTQLMPY--GCLLDYVR-ENKDRIGSQDLLNWCV-QIAKG 121

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L  + + +RDL   N+L++   HV +TDF L+R L
Sbjct: 122 MSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLL 159

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 59.5 bits (144), Expect = 6e-10
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)

Query: 26  LGKGAMGTV----------FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR---- 71
           LG+G  G V          F+  D + D +   P  + V     L    +A + AR    
Sbjct: 13  LGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAV---KMLRE--DANKNARNDFL 67

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVL---------RYKQNDRVF 122
            EI+++SRL  P + +LL    T + L     Y   GDLN             K +    
Sbjct: 68  KEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTI 127

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           S S + F  ++I   +++L ++   +RDL   N L+ ++  + + DF +SRNL
Sbjct: 128 SYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNL 180

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTLHAKHEAERRARWEIRVLSRLS 81
           + LG GA  + +     A D       A+K V   ++T   + E     R EIR+++RL+
Sbjct: 6   QQLGTGAFSSCYQ----ARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLN 61

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           HP + ++LG+   D      V +  GG ++ L  K     F  +VI  Y  +++  + +L
Sbjct: 62  HPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYL 119

Query: 142 HNMGIAYRDLKPENILIRQSGH-VTLTDF 169
           H   I +RD+K  N+LI  +G  + + DF
Sbjct: 120 HENQIIHRDVKGANLLIDSTGQRLRIADF 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 15/161 (9%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSRLSHPF 84
           LG GA G V+   ++     A    A KV+D      K E E      EI +L+   HP 
Sbjct: 13  LGDGAFGKVYKAQNKETGVLA----AAKVID-----TKSEEELEDYMVEIDILASCDHPN 63

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
           + KLL +   +  L   + +C GG ++ +  +  +R  +   IR    + + A+ +LH  
Sbjct: 64  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTEPQIRVVCKQTLEALNYLHEN 122

Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLS----RNLVKKTAF 181
            I +RDLK  NIL    G + L DF +S    R + ++ +F
Sbjct: 123 KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSF 163

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK--NRKETFRNVLM-K 303
           S VGT  Y+SPE +  +G+ F  D W+LG L YEM    +PF G   N     + +    
Sbjct: 165 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCD 224

Query: 304 TPEFVGQR--TALTDLIQRLLEKDPVKRL 330
            P          L DL+ R +  DP KR 
Sbjct: 225 YPPLPADHYSEELRDLVSRCINPDPEKRP 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 24/170 (14%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARC-----PFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L+ LG+G+ G+V+          A         A+KVV         E  +    EI +L
Sbjct: 8   LEKLGEGSYGSVY---------KAIHKETGQVVAIKVV--PVEEDLQEIIK----EISIL 52

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            +   P++ K  GS   +  L W V  YC  G ++ +  K  ++  +   I   L + + 
Sbjct: 53  KQCDSPYIVKYYGSYFKNTDL-WIVMEYCGAGSVSDI-MKITNKTLTEEEIAAILYQTLK 110

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
            +E+LH+    +RD+K  NIL+ + G   L DF +S  L   T  ++ ++
Sbjct: 111 GLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLT-DTMAKRNTV 159

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 13/158 (8%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           N K L+ LG+G   TV+   +R          ALK +    L A+      A  EI ++ 
Sbjct: 1   NFKQLEKLGEGTYATVYKGRNRTTGEIV----ALKEIH---LDAEEGTPSTAIREISLMK 53

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ---NDRVFSPSVIRFYLSEII 135
            L H  + +L   + T+  L     Y    DL   +Y           P+ ++ +  +++
Sbjct: 54  ELKHENIVRLHDVIHTENKLMLVFEYMDK-DLK--KYMDTHGVRGALDPNTVKSFTYQLL 110

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             I   H   + +RDLKP+N+LI + G + L DF L+R
Sbjct: 111 KGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLAR 148

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 90/370 (24%), Positives = 136/370 (36%), Gaps = 156/370 (42%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALK-VVD---KSTLHAKHEAERRARWEIRVLS 78
           L+ LGKGA G V+    +A D   +   ALK + D    +T     +A+R  R EI  L 
Sbjct: 12  LQKLGKGAYGIVW----KAIDRRTKEVVALKKIFDAFRNAT-----DAQRTFR-EIMFLQ 61

Query: 79  RLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR----VFS------PSVI 127
            L  HP + KLL                     NV++  +ND+    VF        +VI
Sbjct: 62  ELGDHPNIVKLL---------------------NVIK-AENDKDIYLVFEYMETDLHAVI 99

Query: 128 R----------FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
           R          + + +++ A++++H+  + +RDLKP NIL+     V L DF L+R+L  
Sbjct: 100 RANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSL-- 157

Query: 178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQ 237
                 +   N + PVL  T+       + TRW                           
Sbjct: 158 -----SELEENPENPVL--TD------YVATRW--------------------------- 177

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
                           Y +PE++ G       VD W++G +  EML G   F G +   T
Sbjct: 178 ----------------YRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTS---T 218

Query: 297 FRNVLMKTPEFVGQRTAL------------------------------------TDLIQR 320
             N L K  E +G  +A                                      DL+++
Sbjct: 219 L-NQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKK 277

Query: 321 LLEKDPVKRL 330
           LL  +P KRL
Sbjct: 278 LLVFNPNKRL 287

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           S +R YL +I+  IE  H+  I +RD+KPENIL+ QSG V L DF  +R L
Sbjct: 100 SRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTL 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 99/277 (35%)

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
                I F L +++ A++++H+ G  +R +K  +IL+   G V L+    S +++K    
Sbjct: 98  LPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHG-- 155

Query: 182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN 241
                              KR R +     H  P++        S +  P          
Sbjct: 156 -------------------KRQRVV-----HDFPKS--------SVKNLP---------- 173

Query: 242 GERSNSFVGTEEYVSPEVVRGD--GHEFAVDWWALGILTYEMLYGTTPF----------- 288
                       ++SPEV++ +  G+    D +++GI   E+  G  PF           
Sbjct: 174 ------------WLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLE 221

Query: 289 --RG-------------------KNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEK 324
             RG                   ++R          + +    RT        ++  L++
Sbjct: 222 KVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQR 281

Query: 325 DPVKRLGYLRGACEIKEHVFFKGVRW--DLLTDVLRP 359
           DP  R      A ++  H FFK  +     L D+L+P
Sbjct: 282 DPESR----PSASQLLNHSFFKQCKRRNTSLLDLLKP 314

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF-- 297
           +  ++ N+FVGT  Y+SPE ++G+ + +A D W+LG+   E   G  PF    +   F  
Sbjct: 152 NTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFEL 211

Query: 298 -RNVLMKTPEFVGQRTA---LTDLIQRLLEKDPVKR 329
            + +    P  +          D I   L+KDP KR
Sbjct: 212 MQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKR 247

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 62/313 (19%), Positives = 110/313 (35%), Gaps = 104/313 (33%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNV--------LRYKQNDRV-FS 123
           E+++++ + H  +  L+            V Y  G  +N+        L+   + ++  +
Sbjct: 70  ELKIMNEIKHENIMGLV-----------DV-YVEGDFINLVMDIMASDLKKVVDRKIRLT 117

Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
            S ++  L +I+  +  LH     +RDL P NI I   G   + DF L+R          
Sbjct: 118 ESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYG------- 170

Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
                     L   E  +R   + ++                                  
Sbjct: 171 ---YPPYSDTLSKDETMQRREEMTSK---------------------------------- 193

Query: 244 RSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV-- 300
                V T  Y +PE++ G + + FAVD W++G +  E+L G   F G+N  +    +  
Sbjct: 194 -----VVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFE 248

Query: 301 LMKTPEFVGQRTALT---------------------------DLIQRLLEKDPVKRLGYL 333
           L+ TP       A                             DL+Q LL+ +P++R+   
Sbjct: 249 LLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERI--- 305

Query: 334 RGACEIKEHVFFK 346
             A E  +H +FK
Sbjct: 306 -SAKEALKHEYFK 317

Length = 335

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKGA GTV+          A     L   D S + A  +   + + E+ +L  L H 
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVEL---DTSNVLAAEKEYEKLQEEVDLLKSLKHV 62

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSP---SVIRFYLSEIICAIEH 140
            + + LG+   D  ++  + + PGG ++ +  +     F P    V   Y  +I+  + +
Sbjct: 63  NIVQYLGTCLDDNTISIFMEFVPGGSISSILNR-----FGPLPEPVFCKYTKQILDGVAY 117

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           LHN  + +RD+K  N+++  +G + L DF  +R L
Sbjct: 118 LHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL 152

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR----GKNRKETFRNVLMKTPEFVG 309
           Y +PEV        A DWW+LG + +E+L G T       G N   T     +  PE+V 
Sbjct: 148 YCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGINTHTT-----LNIPEWVS 202

Query: 310 QRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFF 345
           +      L+Q+LL+ +P +RLG  + G  +IK H FF
Sbjct: 203 EEAR--SLLQQLLQFNPTERLGAGVAGVEDIKSHPFF 237

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 21  KALKILGKGAMGTVFL-VHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           + L+++G+GA G V+   H     PT R   ALK+++  T        +R   E+ +LS+
Sbjct: 4   QRLELIGRGAYGAVYRGKHV----PTGRV-VALKIINLDTPDDDVSDIQR---EVALLSQ 55

Query: 80  LSH---PFLPKLLGSLETDEFLAWAVPYCPGGDLNVL-RYKQNDRVFSPSVIRFYLSEII 135
           L     P + K  GS      L   + Y  GG +  L +       +   +IR    E++
Sbjct: 56  LRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIR----EVL 111

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV----KKTAF 181
            A++++H +G+ +RD+K  NIL+  +G+V L DF ++  L     K++ F
Sbjct: 112 VALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTF 161

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 35/108 (32%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           +    +     + VGT  Y++PEV+ G G+     D W+LG++ YE+             
Sbjct: 141 KLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL------------- 187

Query: 295 ETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH 342
                     PE         DLI+++L+KDP KR        EI EH
Sbjct: 188 ----------PELK-------DLIRKMLQKDPEKRPSAK----EILEH 214

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 56.2 bits (135), Expect = 7e-09
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +GKG+ G VF    +  D   +   A+K++D   L    +     + EI VLS+   
Sbjct: 9   LEKIGKGSFGEVF----KGIDNRTQKVVAIKIID---LEEAEDEIEDIQQEITVLSQCDS 61

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P++ K  GS   D  L   + Y  GG  L++L     D     +++R    EI+  +++L
Sbjct: 62  PYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILR----EILKGLDYL 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL----VKKTAF 181
           H+    +RD+K  N+L+ + G V L DF ++  L    +K+  F
Sbjct: 118 HSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTF 161

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 56.2 bits (135), Expect = 8e-09
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           LK +K+LG GA GTV+         T + P A+K+++++T     +A      E  +++ 
Sbjct: 9   LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT---GPKANVEFMDEALIMAS 65

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           + HP L +LLG   +   +       P G L    ++  D + S  ++ + + +I   + 
Sbjct: 66  MDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCV-QIAKGMM 123

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +L    + +RDL   N+L++   HV +TDF L+R L
Sbjct: 124 YLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL 159

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 36/167 (21%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-----AERRARWEIR 75
           K  KI G+G  G V+   D+          ALK   K  L  + E     A R    EI 
Sbjct: 3   KVEKI-GEGTYGVVYKARDKLTGEIV----ALK---KIRLETEDEGVPSTAIR----EIS 50

Query: 76  VLSRLSHPFLPKLLGSLETD-------EFLAWAVPYCPGGDLNVLRYKQNDRVFS--PSV 126
           +L  L+HP + +LL  + ++       EFL          DL++ +Y  +  +    P +
Sbjct: 51  LLKELNHPNIVRLLDVVHSENKLYLVFEFL----------DLDLKKYMDSSPLTGLDPPL 100

Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           I+ YL +++  I + H+  + +RDLKP+N+LI + G + L DF L+R
Sbjct: 101 IKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           L+ +K+LG GA GTV+           + P A+KV+ + T    ++       E  V++ 
Sbjct: 9   LEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILD---EAYVMAS 65

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQN-DRVFSPSVIRFYLSEIICA 137
           + HP + +LLG +     +       P G L  L Y + + D + S  ++ + + +I   
Sbjct: 66  VDHPHVVRLLG-ICLSSQVQLITQLMPLGCL--LDYVRNHKDNIGSQYLLNWCV-QIAKG 121

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L    + +RDL   N+L++   HV +TDF L++ L
Sbjct: 122 MSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 159

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVV--DKSTLHAKHEAERRARWEIRVLSRLSHP 83
           +G+G  GTVF    +A +       ALK V  D         A R    EI +L  L H 
Sbjct: 8   IGEGTYGTVF----KAKNRETHEIVALKRVRLDDDDEGVPSSALR----EICLLKELKHK 59

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR-VFSPSVIRFYLSEIICAIEHLH 142
            + +L   L +D+ L     YC   D ++ +Y  +      P +++ ++ +++  +   H
Sbjct: 60  NIVRLYDVLHSDKKLTLVFEYC---DQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH 116

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +  + +RDLKP+N+LI ++G + L DF L+R 
Sbjct: 117 SHNVLHRDLKPQNLLINKNGELKLADFGLARA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 55.8 bits (134), Expect = 9e-09
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 15/163 (9%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEIRVL 77
           N +  K+LG+GA G V+L +D  AD T R   A+K V       +   E  A   EI++L
Sbjct: 3   NWRLGKLLGRGAFGEVYLCYD--AD-TGR-ELAVKQVPFDPDSQETSKEVNALECEIQLL 58

Query: 78  SRLSHPFLPKLLGSLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVF---SPSVIRFYLS 132
             L H  + +  G L    ++ L+  V Y PGG +     K   + +   + +V R Y  
Sbjct: 59  KNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSI-----KDQLKAYGALTENVTRRYTR 113

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +I+  + +LH+  I +RD+K  NIL   +G+V L DF  S+ +
Sbjct: 114 QILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRI 156

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-KTPEF 307
           +GT  Y++PEV +G  + +  D W+LG L YEM     PF  ++ ++    V   K P  
Sbjct: 162 IGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPI 221

Query: 308 VGQRTA-LTDLIQRLLEKDPVKRLG 331
               +  L + I+ +L+  P  R  
Sbjct: 222 PPIYSQDLQNFIRSMLQVKPKLRPN 246

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 242 GERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETF 297
           GE   S  GT  Y++PEV+ G    GH  A D W+LG +  EM  G  P+    N  +  
Sbjct: 157 GEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIM 216

Query: 298 RNVLMKTPEFVGQRTALTDL----IQRLLEKDPVKRLGYLRGACEIKEHVF 344
            +V       +     L+      + R LE DP KR      A E+ +H F
Sbjct: 217 FHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRP----TASELLQHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +GKG+ G VF    +  D   +   A+K++D     A+ E E   + EI VLS+   
Sbjct: 9   LERIGKGSFGEVF----KGIDNRTQQVVAIKIIDLE--EAEDEIED-IQQEITVLSQCDS 61

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P++ K  GS      L   + Y  GG  L++LR       F    I   L EI+  +++L
Sbjct: 62  PYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGP----FDEFQIATMLKEILKGLDYL 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           H+    +RD+K  N+L+ + G V L DF ++  L   T  ++ +     F + P
Sbjct: 118 HSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLT-DTQIKRNTFVGTPFWMAP 170

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA-ERRARWEIRV 76
           D  + L+ +G+G  G V+   D+    T +   ALK   K+ L    E     A  EI +
Sbjct: 1   DAYEKLEKIGEGTYGKVYKARDKN---TGKL-VALK---KTRLEMDEEGIPPTALREISL 53

Query: 77  LSRLSH-PFLPKLLGSLETDEFLAWAVPYCP----GGDLN---VLRYKQNDRVFSPSVIR 128
           L  LS   ++ +LL     +E       Y        DL        +   R      I+
Sbjct: 54  LQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIK 113

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRN 174
            ++ +++  + H H  G+ +RDLKP+N+L+ +Q G + + D  L R 
Sbjct: 114 SFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRA 160

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 9   FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 65

Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R  + D + S  ++ + + +I   
Sbjct: 66  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVREHK-DNIGSQYLLNWCV-QIAKG 121

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ 184
           + +L    + +RDL   N+L++   HV +TDF L++ L    A EK+
Sbjct: 122 MNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLL---GADEKE 165

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEIRVL 77
           N +  K+LG+GA G V+L +D  AD T R   A+K V       +   E  A   EI++L
Sbjct: 3   NWRLGKLLGQGAFGRVYLCYD--AD-TGR-ELAVKQVQFDPESPETSKEVNALECEIQLL 58

Query: 78  SRLSHPFLPKLLGSLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + +  G L    +  L+  + + PGG +      ++    + +V R Y  +I+
Sbjct: 59  KNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIK--DQLKSYGALTENVTRKYTRQIL 116

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             + +LH+  I +RD+K  NIL    G+V L DF  S+ L
Sbjct: 117 EGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRL 156

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 10/113 (8%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNV-LRYKQNDRVFS-----PSV 126
           EI+++SRL +P + +LLG   +D+ L     Y   GDLN  L  ++ +  F+     PSV
Sbjct: 67  EIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSV 126

Query: 127 IR---FYLS-EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
                 Y++ +I   +++L ++   +RDL   N L+     + + DF +SRNL
Sbjct: 127 SIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNL 179

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 14/136 (10%)

Query: 50  FALKVV-DKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGG 108
            A+KV+   ++ +A+ +  +    E+++LSRLS P + +LLG    D  L   + Y   G
Sbjct: 49  VAVKVLRPDASDNAREDFLK----EVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENG 104

Query: 109 DLN-VLRYKQ--------NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR 159
           DLN  L+           N +  S S + +  ++I   + +L ++   +RDL   N L+ 
Sbjct: 105 DLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVG 164

Query: 160 QSGHVTLTDFDLSRNL 175
           ++  + + DF +SRNL
Sbjct: 165 KNYTIKIADFGMSRNL 180

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)

Query: 233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
           ++R    + GE + S  GT  +++PEV+RG+ +  A D W+LG    EM  G  P+   +
Sbjct: 148 AKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPW---S 204

Query: 293 RKETFRNVLMKT---------PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV 343
                   L K          PE + +     D +++ L +DP KR      A E+ +H 
Sbjct: 205 ELGNPMAALYKIGSSGEPPEIPEHLSE--EAKDFLRKCLRRDPKKRP----TADELLQHP 258

Query: 344 FF 345
           F 
Sbjct: 259 FL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           DN   +N+ VGT  Y+SPE+     +    D WALG++ YE   G  PF   N+      
Sbjct: 153 DNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILK 212

Query: 300 VLMKTPEFVGQR--TALTDLIQRLLEKDPVKR 329
           ++      V Q     L  LI + L KD  +R
Sbjct: 213 IIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQR 244

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 31/164 (18%)

Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           LK +G GA G V   +D       A      PF      ++  HAK     RA  E+ ++
Sbjct: 21  LKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPF------QNVTHAK-----RAYRELVLM 69

Query: 78  SRLSHPFLPKLLG------SLET--DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
             ++H  +  LL       SLE   D +L   +      D N+ +  Q D       + +
Sbjct: 70  KLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELM-----DANLCQVIQMD--LDHERMSY 122

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 123 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 166

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 16/119 (13%)

Query: 239 FDNGERS----NSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNR 293
            D G+R+     +FVGT  +++PEV+    G++F  D W+ GI   E+  G  P+     
Sbjct: 153 ADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP 212

Query: 294 KETFRNVLMKTP-------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            +     L   P       ++     +   +I   L+KDP KR      A E+ +H FF
Sbjct: 213 MKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKR----PTAEELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 86/372 (23%), Positives = 129/372 (34%), Gaps = 110/372 (29%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-AKHEAERRARWEIR 75
           L + + L  LG+G  G V+    +A         ALK   K  +H  K      A  EI+
Sbjct: 7   LRDYEILGKLGEGTFGEVY----KARQIKTGRVVALK---KILMHNEKDGFPITALREIK 59

Query: 76  VLSRLSHPFLPKLL--------GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-FSPSV 126
           +L +L HP +  L+         S      +    PY    DL+ L   +N  V  + S 
Sbjct: 60  ILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYM-DHDLSGLL--ENPSVKLTESQ 116

Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
           I+ Y+ +++  I +LH   I +RD+K  NILI   G + + DF L+R             
Sbjct: 117 IKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLAR------------- 163

Query: 187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN 246
                   P    P              P  K G                       +  
Sbjct: 164 --------PYDGPP--------------PNPKGG-----------------GGGGTRKYT 184

Query: 247 SFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKN------------- 292
           + V T  Y  PE++ G+  +  AVD W +G +  EM       +GK+             
Sbjct: 185 NLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCG 244

Query: 293 --RKETFRNVLMKTPEFVGQRTALT-----------------DLIQRLLEKDPVKRLGYL 333
              +ET+       P   G  +                    DL+ +LL  DP KRL   
Sbjct: 245 TPTEETWPG-WRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRL--- 300

Query: 334 RGACEIKEHVFF 345
             A +  EH +F
Sbjct: 301 -TASDALEHPYF 311

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 53.5 bits (128), Expect = 8e-08
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 17/163 (10%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V      A D       A+K + +   +  H   +RA  E+ +
Sbjct: 20  LKRYQQLKPIGSGAQGIVC----AAFDTVLGINVAVKKLSRPFQNQTHA--KRAYRELVL 73

Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           L  ++H  +  LL       SLE  + +   +         V+  + +    S     + 
Sbjct: 74  LKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHMELDHERMS-----YL 128

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 129 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 171

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 52.8 bits (126), Expect = 8e-08
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 9/155 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEIRVLSRLSH 82
           K+LG+GA G V+L +D     T R   A K V       +   E  A   EI++L  L H
Sbjct: 8   KLLGQGAFGRVYLCYDV---DTGR-ELAAKQVQFDPESPETSKEVSALECEIQLLKNLQH 63

Query: 83  PFLPKLLGSLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
             + +  G L    ++ L   + Y PGG  +V    +     + SV R Y  +I+  + +
Sbjct: 64  ERIVQYYGCLRDRAEKTLTIFMEYMPGG--SVKDQLKAYGALTESVTRKYTRQILEGMSY 121

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           LH+  I +RD+K  NIL   +G+V L DF  S+ L
Sbjct: 122 LHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRL 156

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 241 NGERSNSFVGTEEYVSPEVVR-GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           N  + ++FVGT  +++PEV+  G  ++   D W+LGI  YEM  G  P+      + FR 
Sbjct: 154 NSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSD---VDAFRA 210

Query: 300 VLM----KTPEFVGQR--TALTDLIQRLLEKDPVKRL 330
           +++    K P          L + +   L+++P +RL
Sbjct: 211 MMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERL 247

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVV--DKSTLHAKHEAERRARWEIRV 76
           N + ++ +G+G  G V+   ++          ALK +  D  T      A R    EI +
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVV----ALKKIRLDTETEGVPSTAIR----EISL 52

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L+HP + KLL  + T+  L     +    DL               +I+ YL +++ 
Sbjct: 53  LKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASPLSGIPLPLIKSYLFQLLQ 111

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 GLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D ++ L  LGKG  G+V+ V  R    T     A+K +      +K     +   E+ +L
Sbjct: 1   DEIEVLDELGKGNYGSVYKVLHRPTGVT----MAMKEIRLELDESKF---NQIIMELDIL 53

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSP-SVIRFYLSEIIC 136
            +   P++    G+   +  +   + Y   G L+ L          P  V+R     ++ 
Sbjct: 54  HKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVK 113

Query: 137 AIEHL---HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            ++ L   HN  I +RD+KP N+L+  +G V L DF +S NLV   A
Sbjct: 114 GLKFLKEEHN--IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLA 158

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +GKG+ G V+    +  D   +   A+K++D   L    +     + EI VLS+   
Sbjct: 9   LERIGKGSFGEVY----KGIDNRTKEVVAIKIID---LEEAEDEIEDIQQEITVLSQCDS 61

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P++ +  GS      L   + Y  GG  L++L+    +  +  +++R    EI+  +++L
Sbjct: 62  PYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILR----EILKGLDYL 117

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL----VKKTAF 181
           H+    +RD+K  N+L+ + G V L DF ++  L    +K+  F
Sbjct: 118 HSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTF 161

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 25/192 (13%)

Query: 20  LKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           LK ++ LGKG  G+V L  +D   D T        V  K   H+  E  R    EI +L 
Sbjct: 6   LKFIQQLGKGNFGSVELCRYDPLQDNTGEV-----VAVKKLQHSTAEHLRDFEREIEILK 60

Query: 79  RLSHPFLPKLLG---SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
            L H  + K  G   S      L   + Y P G L     K  +R+    ++  Y S+I 
Sbjct: 61  SLQHDNIVKYKGVCYSAGRRN-LRLVMEYLPYGSLRDYLQKHRERLDHRKLL-LYASQIC 118

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL--------VKKTA------F 181
             +E+L +    +RDL   NIL+     V + DF L++ L        V++        +
Sbjct: 119 KGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWY 178

Query: 182 EKQSLNNNKFPV 193
             +SL  +KF V
Sbjct: 179 APESLTESKFSV 190

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 16/153 (10%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT 304
           ++SF GT  Y++PE+     +    D W+LG++ YE+L    PF+G +++E  + VL   
Sbjct: 228 ASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGK 287

Query: 305 --PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFI 362
             P      + +  L+  LL K+P  R        ++    F K V  +L  D++R    
Sbjct: 288 YDPFPCPVSSGMKALLDPLLSKNPALR----PTTQQLLHTEFLKYVA-NLFQDIVRHSET 342

Query: 363 PSREENDLTEKAMSGGGVDIREYFENLRAPPPS 395
            S  + +   + +   G          RAPPPS
Sbjct: 343 ISPHDREEILRQLQESGE---------RAPPPS 366

Length = 478

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 14/161 (8%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA-ERRARWEIR 75
           +D  + ++ +G+G  G V+   DR  + T     ALK   K  L  + E     A  EI 
Sbjct: 1   MDQYEKVEKIGEGTYGVVYKARDRVTNET----IALK---KIRLEQEDEGVPSTAIREIS 53

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFS--PSVIRFYLSE 133
           +L  + H  + +L   + +++ L     Y    DL++ ++  +   F+  P +I+ YL +
Sbjct: 54  LLKEMQHGNIVRLQDVVHSEKRLYLVFEYL---DLDLKKHMDSSPDFAKNPRLIKTYLYQ 110

Query: 134 IICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSR 173
           I+  I + H+  + +RDLKP+N+LI R++  + L DF L+R
Sbjct: 111 ILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLAR 151

Length = 294

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           EIR+L +L HP L  L+        L     YC    LN L  ++N R     +I+  + 
Sbjct: 50  EIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNEL--EKNPRGVPEHLIKKIIW 107

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + + A+   H     +RD+KPENILI + G + L DF  +R L
Sbjct: 108 QTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARIL 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 19/167 (11%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  + ++ +GKG  G V+ V ++     A    A+K++D  +     + +     E  +L
Sbjct: 22  DTWEIIETIGKGTYGKVYKVTNKKDGSLA----AVKILDPIS-----DVDEEIEAEYNIL 72

Query: 78  SRLS-HPFLPKLLGSL-ETDEFLA---WAV-PYCPGGDLNVL---RYKQNDRVFSPSVIR 128
             L  HP + K  G   + D+ +    W V   C GG +  L         R+    +I 
Sbjct: 73  QSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEA-MIS 131

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + L   +  ++HLHN  I +RD+K  NIL+   G V L DF +S  L
Sbjct: 132 YILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQL 178

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 69

Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       SLE   D +L   +      D N+ +  Q +       + 
Sbjct: 70  MKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELM-----DANLCQVIQME--LDHERMS 122

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 123 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
           L  +G GA G V    D           A+K + +   S +HAK     R   E+R+L  
Sbjct: 20  LSPVGSGAYGQVCSAFDTKTGRK----VAIKKLSRPFQSAIHAK-----RTYRELRLLKH 70

Query: 80  LSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFYLSE 133
           + H  +  LL        L      + V +  G DLN +++ +      S   I+F + +
Sbjct: 71  MDHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKCQ----KLSDDHIQFLVYQ 126

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           I+  ++++H+ GI +RDLKP NI + +   + + DF L+R
Sbjct: 127 ILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLAR 166

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 21/157 (13%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRVLSRLSHP 83
           LG G  G+V                A+K     TL  +H A  +  +  E  V+++L HP
Sbjct: 3   LGHGNFGSVVKGVYLMKS-GKEVEVAVK-----TLKQEHIAAGKKEFLREASVMAQLDHP 56

Query: 84  FLPKLLGSLETDEF-----LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
            + +L+G  + +       LA      P G L   +Y +  R    S ++    ++   +
Sbjct: 57  CIVRLIGVCKGEPLMLVMELA------PLGPLL--KYLKKRREIPVSDLKELAHQVAMGM 108

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            +L +    +RDL   N+L+       ++DF +SR L
Sbjct: 109 AYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRAL 145

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 80/339 (23%), Positives = 135/339 (39%), Gaps = 78/339 (23%)

Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           L+  + +K +G G  G VFLV H R  +      F  K +    L  K   + +   E+ 
Sbjct: 12  LNEYEVIKKIGNGRFGEVFLVKHKRTQEF-----FCWKAISYRGL--KEREKSQLVIEVN 64

Query: 76  VLSRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDL--NVLR-YKQNDRVFSPSVIRFY 130
           V+  L H  + + +     + ++ L   + +C  GDL  N+ + YK   ++   +++   
Sbjct: 65  VMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDI- 123

Query: 131 LSEIICAIEHLHNMG-------IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
             +++ A+ + HN+        + +RDLKP+NI +              R++ K TA   
Sbjct: 124 TRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTG----------IRHIGKITA--- 170

Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
           Q+ N N  P+  + +                     GL K                    
Sbjct: 171 QANNLNGRPIAKIGD--------------------FGLSKNIGIE--------------S 196

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEF--AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
            ++S VGT  Y SPE++  +   +    D WALG + YE+  G TPF   N      + L
Sbjct: 197 MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISEL 256

Query: 302 MKTPEF--VGQRTALTDLIQRLLEKDPVKR------LGY 332
            + P+    G+   L  LI+ LL     +R      LGY
Sbjct: 257 KRGPDLPIKGKSKELNILIKNLLNLSAKERPSALQCLGY 295

Length = 1021

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 27/187 (14%)

Query: 13  PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           P L+ +++K   ++G+G  G V  +  R      R   A+K + +   +A  +  R    
Sbjct: 2   PVLEWNDIKFQDVIGEGNFGQV--LKARIKKDGLRMDAAIKRMKE---YASKDDHRDFAG 56

Query: 73  EIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF--------- 122
           E+ VL +L  HP +  LLG+ E   +L  A+ Y P G  N+L + +  RV          
Sbjct: 57  ELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG--NLLDFLRKSRVLETDPAFAIA 114

Query: 123 -------SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN- 174
                  S   +  + +++   +++L      +RDL   NIL+ ++    + DF LSR  
Sbjct: 115 NSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 174

Query: 175 --LVKKT 179
              VKKT
Sbjct: 175 EVYVKKT 181

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTV+     A D       A+K ++      K         EI V+    HP +
Sbjct: 27  IGQGASGTVYT----AIDVATGQEVAIKQMNLQQQPKKELIIN----EILVMRENKHPNI 78

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A+E LH+ 
Sbjct: 79  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR----ECLQALEFLHSN 134

Query: 145 GIAYRDLKPENILIRQSGHVTLTDF 169
            + +RD+K +NIL+   G V LTDF
Sbjct: 135 QVIHRDIKSDNILLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           EI ++    H  +    GS    + L   + +C GG L  + +       S S I +   
Sbjct: 56  EIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGP--LSESQIAYVSR 113

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
           E +  + +LH+ G  +RD+K  NIL+  +GHV L DF +S  +    A  K
Sbjct: 114 ETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRK 164

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE--AERRARWEIRVLSRL 80
           L+ LG+G   TVF           R      +V    +  +HE  A   A  E+ +L  L
Sbjct: 11  LEKLGEGTYATVF---------KGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDL 61

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIE 139
            H  +  L   + TD+ L     Y    D ++ +Y  +   + S   ++ +L +I+  + 
Sbjct: 62  KHANIVTLHDIVHTDKSLTLVFEYL---DKDLKQYMDDCGNIMSMHNVKIFLYQILRGLA 118

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + H   + +RDLKP+N+LI + G + L DF L+R
Sbjct: 119 YCHRRKVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 30/178 (16%)

Query: 26  LGKGAMGTVFL--VHDRAADPTARCPFALK-----VVDKSTLHAKHEAERRAR----WEI 74
           LG+G  G V L  V +    PT + PF ++     +V    L    +A + AR     E+
Sbjct: 13  LGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRP--DANKNARNDFLKEV 70

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDR------------- 120
           ++LSRL  P + +LLG    ++ L     Y   GDLN  L     D              
Sbjct: 71  KILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAH 130

Query: 121 ---VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
                S S +     +I   +++L ++   +RDL   N L+ ++  + + DF +SRNL
Sbjct: 131 CLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNL 188

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 65/359 (18%), Positives = 125/359 (34%), Gaps = 120/359 (33%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
             + +K LG+GA G V    +           A+K +  + + +K    +RA  E+++L 
Sbjct: 1   RYELIKELGQGAYGIVCSARNAETSEEETV--AIKKI--TNVFSKKILAKRALRELKLLR 56

Query: 79  RL-SHPFLPKLLGSLETDEFLAWAVPY-----------CPGGDLN-VLRYKQNDRVFSPS 125
               H  +  L      D  + +   +               DL+ ++R  Q     + +
Sbjct: 57  HFRGHKNITCLY-----DMDIVFPGNFNELYLYEELMEA---DLHQIIRSGQP---LTDA 105

Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
             + ++ +I+C ++++H+  + +RDLKP N+L+     + + DF L+R            
Sbjct: 106 HFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARG----------- 154

Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
                F   P          + TRW                                   
Sbjct: 155 -----FSENPGENAGFMTEYVATRW----------------------------------- 174

Query: 246 NSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL--M 302
                   Y +PE++     +  A+D W++G +  E+L     F+GK+  +    +L  +
Sbjct: 175 --------YRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVL 226

Query: 303 KTPE-----FVGQRTALT-------------------------DLIQRLLEKDPVKRLG 331
            TP+      +G   A                           DL+++LL  DP KR+ 
Sbjct: 227 GTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRIS 285

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTP-FRGKNRKETFRNVLMKT 304
           NS VGT  +++PEV++   +   VD W+LGI+  EM  G  P  R    +  F       
Sbjct: 174 NSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGI 233

Query: 305 PEFVGQR---TALTDLIQRLLEKDPVKR 329
           P             D + + L KDP KR
Sbjct: 234 PPLKNPEKWSPEFKDFLNKCLVKDPEKR 261

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTP 287
           + N+FVGT  +++PEV++  G++   D W+LGI   E+  G  P
Sbjct: 154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPP 197

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 19/143 (13%)

Query: 29  GAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKL 88
           G +  V LV D     T    F LK + KS      E  R    E   +     P +  L
Sbjct: 4   GVIDKVLLVMDTRTQQT----FILKGLRKS-----SEYSR----ERLTIIPHCVPNMVCL 50

Query: 89  LGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGI 146
              + +++ +   + +  GG L  ++ ++           ++ + +E++ A++ LH  GI
Sbjct: 51  HKYIVSEDSVFLVLQHAEGGKLWSHISKFLN----IPEECVKRWAAEMVVALDALHREGI 106

Query: 147 AYRDLKPENILIRQSGHVTLTDF 169
             RDL P NIL+   GH+ LT F
Sbjct: 107 VCRDLNPNNILLDDRGHIQLTYF 129

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 9/151 (5%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           ++G+      F V  R +DP        KVV K  +         AR E+  L+   H  
Sbjct: 74  LVGRNPTTAAF-VATRGSDP------KEKVVAKFVMLNDERQAAYARSELHCLAACDHFG 126

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRV-FSPSVIRFYLSEIICAIEHLH 142
           + K     ++D+ L   + Y  GGDLN  ++ +  + + F    +     +I+ A++ +H
Sbjct: 127 IVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH 186

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +  + +RDLK  NI +  +G + L DF  S+
Sbjct: 187 SRKMMHRDLKSANIFLMPTGIIKLGDFGFSK 217

Length = 478

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 20/111 (18%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETD-------EFLAWAVPYCPGGDLNVLRYKQN---DRVF 122
           EI +L  L HP +  L   L  +       EFL           +++ +Y  +    +  
Sbjct: 49  EISLLKELQHPNIVCLQDVLMQESRLYLIFEFL----------SMDLKKYLDSLPKGQYM 98

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              +++ YL +I+  I   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 99  DAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLAR 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 48/155 (30%), Positives = 68/155 (43%), Gaps = 13/155 (8%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---H 82
           +G GA GTV+    +A DP +    ALK V   T   +         E+ +L RL    H
Sbjct: 8   IGVGAYGTVY----KARDPHSGHFVALKSVRVQT--NEDGLPLSTVREVALLKRLEAFDH 61

Query: 83  PFLPKLL---GSLETD-EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +L+    +  TD E     V      DL     K          I+  + + +  +
Sbjct: 62  PNIVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGL 121

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + LH   I +RDLKPENIL+   G V L DF L+R
Sbjct: 122 DFLHANCIVHRDLKPENILVTSGGQVKLADFGLAR 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 72/330 (21%), Positives = 117/330 (35%), Gaps = 87/330 (26%)

Query: 24  KILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS 81
             LG GA G V+     D     +     A+K + K    A  + ++    E  ++S  +
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKG---ATDQEKKEFLKEAHLMSNFN 57

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI--IC--- 136
           HP + KLLG    +E     +    GGDL  L Y ++ RV         L E+  IC   
Sbjct: 58  HPNIVKLLGVCLLNEPQYIIMELMEGGDL--LSYLRDARVERFGPPLLTLKELLDICLDV 115

Query: 137 --AIEHLHNMGIAYRDLKPENILIRQSGH-----VTLTDFDLSRNLVKKTAFEKQSLNNN 189
                +L  M   +RDL   N L+ + G+     V + DF L+R++ K   + K+     
Sbjct: 116 AKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEG--EG 173

Query: 190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV 249
             PV               RW+                  +P S     F          
Sbjct: 174 LLPV---------------RWM------------------APESLLDGKFTTQS------ 194

Query: 250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVL----MKT 304
                               D W+ G+L +E+L  G  P+   N +E  ++V     ++ 
Sbjct: 195 --------------------DVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQK 234

Query: 305 PEFVGQRTALTDLIQRLLEKDPVKRLGYLR 334
           PE    +  +  L+     +DP +R  + R
Sbjct: 235 PENCPDK--IYQLMTNCWAQDPSERPTFDR 262

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 29/161 (18%)

Query: 23  LKILGKGAMGTV-----FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L+ +G GA G V      L     A      PF+  V+ K T             E+++L
Sbjct: 15  LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYR-----------ELKLL 63

Query: 78  SRLSHPFLPKLLGSLETDEFLA-----WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             L H  +  L     +D F++     + V    G DL+ L      R      I+++L 
Sbjct: 64  KHLRHENIISL-----SDIFISPLEDIYFVTELLGTDLHRL---LTSRPLEKQFIQYFLY 115

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +I+  ++++H+ G+ +RDLKP NILI ++  + + DF L+R
Sbjct: 116 QILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLAR 156

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76

Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 131

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 174

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIR 75
           L  ++ L+ LG+GA G V+       +        A+K + ++      +  R+   E  
Sbjct: 4   LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQ---EAE 60

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLS- 132
           ++S L HP +  LLG    ++       Y   GDL+  ++R   +  V + S      S 
Sbjct: 61  LMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSS 120

Query: 133 -----------EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
                      +I   +E+L +    +RDL   N L+ +   V ++DF LSR
Sbjct: 121 LDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSR 172

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 65/293 (22%), Positives = 105/293 (35%), Gaps = 94/293 (32%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA----- 70
            +   + L  +G+G  G V+    RA D T+    ALK V       + + ER       
Sbjct: 5   SVTEFEKLNRIGEGTYGIVY----RARDTTSGEIVALKKV-------RMDNERDGIPISS 53

Query: 71  -RWEIRVLSRLSHPFLPKLL----GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPS 125
            R EI +L  L HP + +L     G      FL   + YC   DL  L        FS S
Sbjct: 54  LR-EITLLLNLRHPNIVELKEVVVGKHLDSIFLV--MEYCEQ-DLASLLD-NMPTPFSES 108

Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
            ++  + +++  +++LH   I +RDLK  N+L+   G + + DF L+R            
Sbjct: 109 QVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLART----------- 157

Query: 186 LNNNKFPVLPVTENPKRHR--RILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
                         P +    +++T W                                 
Sbjct: 158 -----------YGLPAKPMTPKVVTLW--------------------------------- 173

Query: 244 RSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
                     Y +PE++ G   +  A+D WA+G +  E+L       GK+  E
Sbjct: 174 ----------YRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIE 216

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRV 76
            + L  +G GA G+V      A D   R   A+K + +   S +HA     RR   E+R+
Sbjct: 17  YQNLTPVGSGAYGSV----CSAYDTRLRQKVAVKKLSRPFQSLIHA-----RRTYRELRL 67

Query: 77  LSRLSHPFLPKLLG----SLETDEF-LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           L  + H  +  LL     +   + F   + V    G DLN +   Q     S   ++F +
Sbjct: 68  LKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKCQK---LSDEHVQFLI 124

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            +++  ++++H+ GI +RDLKP N+ + +   + + DF L+R
Sbjct: 125 YQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLAR 166

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 14/93 (15%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT 304
           + +F GT  Y+SPE ++  G++   D W+LG + YEM      F G+N    F +V+++ 
Sbjct: 162 ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN----FLSVVLRI 217

Query: 305 PEFVGQRTALTD--------LIQRLLEKDPVKR 329
            E  G   +L +        ++Q +L KDP  R
Sbjct: 218 VE--GPTPSLPETYSRQLNSIMQSMLNKDPSLR 248

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 16/180 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           ++   L  +K LG G  G V L   RA     +   A+K +++  +  +   E     E 
Sbjct: 1   INPSELTFMKELGSGQFGVVHLGKWRA-----QIKVAIKAINEGAMSEEDFIE-----EA 50

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+ +LSHP L +L G     + L     +   G L N LR +Q     S  ++     +
Sbjct: 51  KVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQG--KLSKDMLLSMCQD 108

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +   +E+L      +RDL   N L+  +G V ++DF ++R ++     E  S +  KFPV
Sbjct: 109 VCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDD---EYTSSSGAKFPV 165

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R  S VGT  +++PEV+    +   VD W+LGI+  EM+ G  P+  +   +  + +   
Sbjct: 171 RRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDN 230

Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
            P  +         L   + R+L +DP +R      A E+  H F     
Sbjct: 231 LPPKLKNLHKVSPRLRSFLDRMLVRDPAQRA----TAAELLNHPFLAKAG 276

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 15/160 (9%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE--AERRARWEI 74
           L+    L  LG+G   TVF           R      +V    +  +HE  A   A  E+
Sbjct: 4   LETYVKLDKLGEGTYATVF---------KGRSKLTENLVALKEIRLEHEEGAPCTAIREV 54

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSE 133
            +L  L H  +  L   + T+  L     Y    D ++ +Y  N   + S   ++ ++ +
Sbjct: 55  SLLKNLKHANIVTLHDIIHTERCLTLVFEYL---DSDLKQYLDNCGNLMSMHNVKIFMFQ 111

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  + + H   I +RDLKP+N+LI + G + L DF L+R
Sbjct: 112 LLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 24/167 (14%)

Query: 18  DNLKALKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           +  + L  +G GA G+V    D     R A      PF      +S +HAK     R   
Sbjct: 17  ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYR 65

Query: 73  EIRVLSRLSHPFLPKLLG----SLETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVI 127
           E+R+L  + H  +  LL     +   +EF   + V +  G DLN +   Q     +   +
Sbjct: 66  ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHV 122

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +F + +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 123 QFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 169

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS---TLHAKHEAERRARWEIRVLSRL 80
           KILG+G  G+V        D +      LKV  K+    +H   E E     E   +   
Sbjct: 5   KILGEGEFGSVMEGQLSQDDGSQ-----LKVAVKTMKLDIHTYSEIEEFLS-EAACMKDF 58

Query: 81  SHPFLPKLLG-SLETDEFLAWA-----VPYCPGGDLNVL----RYKQNDRVFSPSVIRFY 130
            HP + KL+G   E             +P+   GDL+      R            +  +
Sbjct: 59  DHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKF 118

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +I   +E+L N    +RDL   N ++R+   V + DF LS+ +
Sbjct: 119 MVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKI 163

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 134 IICAIEHLH-NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I+ A+E+LH  + + +RD+KP N+LI ++G V L DF +S  LV   A
Sbjct: 112 IVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA 159

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 10/167 (5%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L  ++L+ +  LG G  G+V  V             A KVV    + AK    ++   E+
Sbjct: 2   LRNEDLETISDLGAGNGGSVSKVKHIPTGTV----MAKKVV---HIGAKSSVRKQILREL 54

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           +++     P++    G+   +  +   + +   G L+ + YK+   +    ++      +
Sbjct: 55  QIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRI-YKKGGPI-PVEILGKIAVAV 112

Query: 135 ICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +  + +L+N+  I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 113 VEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIA 159

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT 304
           +++FVGT  Y+SPE ++G  +    D W+LGI   E+  G  PF   N  +  ++  M  
Sbjct: 159 ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGI 218

Query: 305 PEFVGQ--------------RTALTDLIQRLLEKDPVKR 329
            + + Q                 L D +   L KDP +R
Sbjct: 219 LDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTER 257

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ + L+ LG+G+  TV+    +          ALKV+    L  +      A  E  +L
Sbjct: 5   DSYEKLEKLGEGSYATVYKGKSKVNGKLV----ALKVI---RLQEEEGTPFTAIREASLL 57

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIIC 136
             L H  +  L   + T E L     Y      ++ +Y  ++     P  ++ +L +++ 
Sbjct: 58  KGLKHANIVLLHDIIHTKETLTLVFEYV---HTDLCQYMDKHPGGLHPENVKLFLFQLLR 114

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            + ++H   I +RDLKP+N+LI  +G + L DF L+R
Sbjct: 115 GLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 22/165 (13%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWEI 74
           D  + LK +G GA GTV    DR            KV  K  L+   ++E   +RA  E+
Sbjct: 15  DRYRDLKQVGSGAYGTVCSALDRRT--------GAKVAIKK-LYRPFQSELFAKRAYREL 65

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLA------WAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           R+L  + H  +  LL     D  L         +P+  G DL  L   +     S   I+
Sbjct: 66  RLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKHEK---LSEDRIQ 121

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           F + +++  ++++H  GI +RDLKP N+ + +   + + DF L+R
Sbjct: 122 FLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLAR 166

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 18/105 (17%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG----- 290
            Q  D   + N+ +GT  +++PEV++  G+    D W+LGI   EM  G  P+       
Sbjct: 147 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMR 206

Query: 291 ------KNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                      T  +    +PEF        D +++ L KDP +R
Sbjct: 207 AIFMIPNKPPPTLSDPEKWSPEF-------NDFVKKCLVKDPEER 244

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLM 302
           + ++ VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N  +  +     
Sbjct: 171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATN 230

Query: 303 KTPEFVG---QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R LE D  KR      A E+ +H F K
Sbjct: 231 GTPELQNPEKLSAIFRDFLNRCLEMDVEKRG----SAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTVF   D A           +V  K     K   +     EI V+  L +P +
Sbjct: 27  IGQGASGTVFTAIDVA--------TGQEVAIKQINLQKQPKKELIINEILVMKELKNPNI 78

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A+E LH  
Sbjct: 79  VNFLDSFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCR----ECLQALEFLHAN 134

Query: 145 GIAYRDLKPENILIRQSGHVTLTDF 169
            + +RD+K +N+L+   G V LTDF
Sbjct: 135 QVIHRDIKSDNVLLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 20/177 (11%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RW 72
           ++L  ++ ++ LG+   G V+  H     P  +     + V   TL  K E   R   + 
Sbjct: 2   INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQT----QAVAIKTLKDKAEGPLREEFKH 57

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN---VLRYKQND---------- 119
           E  + SRL HP +  LLG +  ++ L+    YC   DL+   V+R   +D          
Sbjct: 58  EAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTV 117

Query: 120 -RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
                P+     +++I   +E L +  + ++DL   N+L+    +V ++D  L R +
Sbjct: 118 KSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREV 174

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG 290
           ++S VGT  Y+SPE +  +G+ F  D W+LG L YEM    +PF G
Sbjct: 163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG 208

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG 290
           ++S VGT  Y+SPE +  +G+ F  D W+LG L YEM    +PF G
Sbjct: 163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG 208

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKG  G VF           + P A+K   +       E + +   E R+L +  HP
Sbjct: 1   ELLGKGNFGEVF-----KGTLKDKTPVAVKTCKEDL---PQELKIKFLSEARILKQYDHP 52

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            + KL+G     + +   +   PGGD      K+ D + +  +++F L +    + +L +
Sbjct: 53  NIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFAL-DAAAGMAYLES 111

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
               +RDL   N L+ ++  + ++DF +SR
Sbjct: 112 KNCIHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  +L  ++HP + +L G+   ++F    +P          RYK +   +  +     + 
Sbjct: 133 EAHILRAINHPSIIQLKGTFTYNKFTCLILP----------RYKTDLYCYLAAKRNIAIC 182

Query: 133 EIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           +I+        AI++LH   I +RD+K ENI I   G V L DF
Sbjct: 183 DILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDF 226

Length = 391

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 20/162 (12%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           ++++G G  G V+          A    A+KV+D        + E   + EI +L + SH
Sbjct: 21  VEVVGNGTYGQVYKGRHVKTGQLA----AIKVMD-----VTEDEEEEIKLEINMLKKYSH 71

Query: 83  ---------PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
                     F+ K       D+ L   + +C  G +  L             I +   E
Sbjct: 72  HRNIATYYGAFIKK--SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICRE 129

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I+  + HLH   + +RD+K +N+L+ ++  V L DF +S  L
Sbjct: 130 ILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 171

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARW- 72
           +D   +K  K++G G  G V     R   P  R  P A+K     TL A +  ++R  + 
Sbjct: 1   IDASCIKIEKVIGAGEFGEV--CSGRLKLPGKREIPVAIK-----TLKAGYTEKQRRDFL 53

Query: 73  -EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  ++ +  HP +  L G +   + +     Y   G L+    +++D  F+   +   L
Sbjct: 54  SEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAF-LRKHDGQFTVIQLVGML 112

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             I   +++L +MG  +RDL   NIL+  +    ++DF LSR L
Sbjct: 113 RGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           Q  D   + N+FVGT  +++PEV++   ++F  D W+LGI   E+  G  P    +    
Sbjct: 150 QLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRV 209

Query: 297 FRNVLMKT-PEFVGQRTA-LTDLIQRLLEKDPVKR 329
              +   + P   GQ +    + ++  L KDP  R
Sbjct: 210 LFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFR 244

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 41/213 (19%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           ++   + L  +G+G  G VF    +          ALK V     + K      A  EI+
Sbjct: 10  EVSKYEKLAKIGQGTFGEVFKARHKKTKQI----VALKKV--LMENEKEGFPITALREIK 63

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND--RVFSPSVIRFYLSE 133
           +L  L H  +  L+   E     A       G    V  + ++D   + S   ++F LSE
Sbjct: 64  ILQLLKHENVVNLI---EICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSE 120

Query: 134 IICAIEHL-------HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
           I   ++ L       H   I +RD+K  NILI + G + L DF L+R             
Sbjct: 121 IKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFS---------- 170

Query: 187 NNNKFPVLPVTENPKRHR---RILTRWLHALPE 216
                    +++N K +R   R++T W    PE
Sbjct: 171 ---------LSKNSKPNRYTNRVVTLWYRP-PE 193

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 38/203 (18%)

Query: 19  NLKALKILGKGAMGTV-----FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           NL   K LG+G  G V     F +  RA   T     A+K++ ++       +E R    
Sbjct: 1   NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTV----AVKMLKENA----SSSELRDLLS 52

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLR--------------YKQ 117
           E  +L +++HP + KL G+   D  L   V Y   G L + LR               + 
Sbjct: 53  EFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRN 112

Query: 118 NDRVFSPSVIRFYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD 170
           +  + +P      + ++I         +++L  M + +RDL   N+L+ +   + ++DF 
Sbjct: 113 SSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFG 172

Query: 171 LSRNLVKKTAFEKQSLNNNKFPV 193
           LSR++ ++ ++ K+S    + PV
Sbjct: 173 LSRDVYEEDSYVKRS--KGRIPV 193

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           P  +R Y+ ++I AI   H   I +RD+KPEN+LI  +  + L DF  +RNL + +
Sbjct: 99  PEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGS 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           + ++ VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N       +   
Sbjct: 171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATN 230

Query: 304 -TPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R LE D V R G    A E+ +H F K
Sbjct: 231 GTPELQNPERLSAVFRDFLNRCLEMD-VDRRG---SAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +K+L  G    V+L+  +  D      + LK+       A  E E      +++L+R   
Sbjct: 3   IKLLKGGLTNRVYLLGTKDED------YVLKINPSREKGADREREVAI---LQLLARKGL 53

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P +PK+L S E+D +    + +  G  L+ +  ++ + +         L+E++  +  L 
Sbjct: 54  P-VPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQ------LAELLAKLHQLP 106

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            + + + DL P NIL+     + + D++ + 
Sbjct: 107 LLVLCHGDLHPGNILVDDGKILGIIDWEYAG 137

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE-TFRNVLMK 303
           +++ +GT  Y+SPE+     + +  D WALG   YEM      F  K+     +R +  K
Sbjct: 159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGK 218

Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKR 329
            P      +  L +LI  +L K P KR
Sbjct: 219 LPPMPKDYSPELGELIATMLSKRPEKR 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           + ++ VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N       +   
Sbjct: 171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATN 230

Query: 304 -TPEFVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R LE D  KR      A E+ +H F K
Sbjct: 231 GTPELQNPEKLSPIFRDFLNRCLEMDVEKR----GSAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 25/163 (15%)

Query: 22  ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWEIRVLS 78
           +LK +G GA G+V      A D       A+K      L    ++E   +RA  E+ +L 
Sbjct: 19  SLKQVGSGAYGSVC----SAIDKRTGEKVAIK-----KLSRPFQSEIFAKRAYRELTLLK 69

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQND------RVFSPSVIRFYL 131
            + H  +  LL     D F + AV      D   V+ Y Q D         S   +++ +
Sbjct: 70  HMQHENVIGLL-----DVFTS-AVSGDEFQDFYLVMPYMQTDLQKIMGHPLSEDKVQYLV 123

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
            +++C ++++H+ GI +RDLKP N+ + +   + + DF L+R+
Sbjct: 124 YQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARH 166

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 11/152 (7%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ LG+G+  TV+    R          ALKV+   ++  +      A  E  +L  L H
Sbjct: 10  LEKLGEGSYATVYKGISRINGQLV----ALKVI---SMKTEEGVPFTAIREASLLKGLKH 62

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIEHL 141
             +  L   + T E L +   Y      ++ +Y  Q+     P  +R ++ +++  + ++
Sbjct: 63  ANIVLLHDIIHTKETLTFVFEYM---HTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYI 119

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H   I +RDLKP+N+LI   G + L DF L+R
Sbjct: 120 HGQHILHRDLKPQNLLISYLGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPF-ALKVVDKSTLHAKHEAERRARWE 73
           +  D +   + LG+GA G VFL      +P       A+K + ++  +   +   R   E
Sbjct: 2   VQRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFER---E 58

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVF--SPSVIRFY 130
             +L+   H  + K  G     +       Y   GDLN  LR    D  F  SP      
Sbjct: 59  AELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGE 118

Query: 131 LSE---------IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           L+          I   + +L +    +RDL   N L+     V + DF +SR++
Sbjct: 119 LTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDV 172

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 7/161 (4%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL   K LG GA G V    +  A   ++    +KV  K      H +ER A   E+++
Sbjct: 35  NNLSFGKTLGAGAFGKVV---EATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKI 91

Query: 77  LSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEI 134
           +S L +H  +  LLG+      +     YC  GDL N LR K+   +    ++ F   ++
Sbjct: 92  MSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFS-YQV 150

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              +  L +    +RDL   N+L+     V + DF L+R++
Sbjct: 151 AKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDI 191

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%)

Query: 20  LKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRV 76
           LK +++LG+G  G V L  +D A D T       ++V   TL  +   +  + W  EI +
Sbjct: 6   LKKIRVLGEGHFGKVSLYCYDPANDGTG------EMVAVKTLKRECGQQNTSGWKKEINI 59

Query: 77  LSRLSHPFLPKLLG--SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           L  L H  + K  G  S +  + L   + Y P G L    Y    ++ + + +  +  +I
Sbjct: 60  LKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSL--RDYLPKHKL-NLAQLLLFAQQI 116

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              + +LH+    +RDL   N+L+     V + DF L++
Sbjct: 117 CEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAK 155

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 22/169 (13%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER---RARWE 73
           +D    +  +G+G  G V+   D+          ALK V        +E E     A  E
Sbjct: 6   VDKFDIIGQIGEGTYGQVYKARDKDTGELV----ALKKV-----RLDNEKEGFPITAIRE 56

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV---------FSP 124
           I++L +L+H  +  L   + TD+  A       G    V  Y  +D +         FS 
Sbjct: 57  IKILRQLNHRNIVNLK-EIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSE 115

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             I+ ++ +++  + + H     +RD+K  NIL+   G + L DF L+R
Sbjct: 116 DHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLAR 164

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 27  GKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLP 86
           G+G  G V+    +         +A+K            ++   R EI +L  L H  + 
Sbjct: 9   GRGTYGRVYKAKRKNGKDGK--EYAIKKFKGDKEQYTGISQSACR-EIALLRELKHENVV 65

Query: 87  KLLGS-LETDEFLAW-AVPYCPGGDLNVLRY-KQNDRV-FSPSVIRFYLSEIICAIEHLH 142
            L+   LE  +   +    Y       ++++ +Q  RV   PS+++  L +I+  + +LH
Sbjct: 66  SLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH 125

Query: 143 NMGIAYRDLKPENILI----RQSGHVTLTDFDLSR 173
           +  + +RDLKP NIL+     + G V + D  L+R
Sbjct: 126 SNWVLHRDLKPANILVMGEGPERGVVKIGDLGLAR 160

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L+  K L  LG+G+  TV+    +          ALK +    L  +  A   A  E  +
Sbjct: 4   LETYKKLDKLGEGSYATVY----KGRSKLTGQLVALKEI---RLEHEEGAPFTAIREASL 56

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEII 135
           L  L H  +  L   + T + L     Y    D ++ +Y  +     S   +R +L +++
Sbjct: 57  LKDLKHANIVTLHDIIHTKKTLTLVFEYL---DTDLKQYMDDCGGGLSMHNVRLFLFQLL 113

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             + + H   + +RDLKP+N+LI + G + L DF L+R
Sbjct: 114 RGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 109 DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD 168
           DL     K  +       I+  + +++  ++ LH+  + +RDLKP+NIL+  SG + L D
Sbjct: 94  DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD 153

Query: 169 FDLSR 173
           F L+R
Sbjct: 154 FGLAR 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           F  S ++  + +++  + HLH+  I +RDLK  N+L+   G + + DF L+R
Sbjct: 103 FLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAR 154

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           +  S VGT  +++PEV+    +   VD W+LGI+  EM+ G  P+   +  +  + +   
Sbjct: 173 KRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDS 232

Query: 304 TP----EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P            L D ++R+L ++P +R      A E+ +H F 
Sbjct: 233 PPPKLKNAHKISPVLRDFLERMLTREPQER----ATAQELLDHPFL 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 20/162 (12%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           ++++G G  G V+          A    A+KV+D +      + E   + EI +L + SH
Sbjct: 11  VELVGNGTYGQVYKGRHVKTGQLA----AIKVMDVTG-----DEEEEIKQEINMLKKYSH 61

Query: 83  ---------PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
                     F+ K    +  D+ L   + +C  G +  L             I +   E
Sbjct: 62  HRNIATYYGAFIKKNPPGM--DDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICRE 119

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I+  + HLH   + +RD+K +N+L+ ++  V L DF +S  L
Sbjct: 120 ILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 161

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           + ++ VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N       +   
Sbjct: 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 231

Query: 304 -TPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R L+ D  KR      A E+ +H F K
Sbjct: 232 GTPELQNPEKLSAIFRDFLNRCLDMDVEKR----GSAKELLQHQFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET-FR 298
           D  +   S VGT  +++PEV+   G   A D W+LG    E+L G  P+   N     FR
Sbjct: 151 DVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFR 210

Query: 299 NVLMKTPEF-VGQRTALTDLIQRLLEKDPVKR 329
            V    P    G    L D + +  +KDP  R
Sbjct: 211 IVQDDHPPLPEGISPELKDFLMQCFQKDPNLR 242

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     R      +   A+K++ + ++     +E     E 
Sbjct: 1   IDPKDLTFLKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGSM-----SEDEFIEEA 50

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+ +LSH  L +L G       +     Y   G L N LR     + F PS +     +
Sbjct: 51  KVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHG--KRFQPSQLLEMCKD 108

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +   + +L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV
Sbjct: 109 VCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDD---EYTSSVGSKFPV 165

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 17/163 (10%)

Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           +L++  LK L+ +GKG  G V L   R      +C              K++A  +A   
Sbjct: 2   ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC-------------IKNDATAQAFLA 48

Query: 73  EIRVLSRLSHPFLPKLLGSL-ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFY 130
           E  V+++L H  L +LLG + E    L     Y   G L + LR +    +    +++F 
Sbjct: 49  EASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS 108

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           L ++  A+E+L      +RDL   N+L+ +     ++DF L++
Sbjct: 109 L-DVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF------RN 299
            +FVGT  Y++PE ++G+ +    D W+LG+   E+  G  P+  +N             
Sbjct: 157 KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYI 216

Query: 300 VLMKTPEFVGQRTA--LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
           V    P     + +    D +   L KDP +R  Y     E+ EH F K   
Sbjct: 217 VNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYK----ELLEHPFIKKYE 264

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 39/163 (23%)

Query: 23  LKILGKGAMGTVFLVHD-RAADPTARCPFALKVVDKSTLHAKHEAERRARW-----EIRV 76
           L+ +G G+ G V+   D R  +  A        + K +   K   E+   W     E++ 
Sbjct: 30  LREIGHGSFGAVYFARDVRTNEVVA--------IKKMSYSGKQSNEK---WQDIIKEVKF 78

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI- 134
           L R+ HP   +  G     E  AW V  YC G   ++L   +             L E+ 
Sbjct: 79  LQRIKHPNSIEYKGCY-LREHTAWLVMEYCLGSASDLLEVHKKP-----------LQEVE 126

Query: 135 ICAIEH--------LHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           I AI H        LH+  + +RD+K  NIL+ + G V L DF
Sbjct: 127 IAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADF 169

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 26/182 (14%)

Query: 15  LDLDNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           L+L  L   +I+G+G  G V        + A    +C     V  ++ L           
Sbjct: 3   LNLQKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKC----DVTAQAFLE---------- 48

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  V+++L H  L +LLG +  +           G  +N LR +    V    +++F L
Sbjct: 49  -ETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSL 107

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
            ++   +E+L +  + +RDL   NIL+ + G   ++DF L+R            ++N+K 
Sbjct: 108 -DVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLAR-------VGSMGVDNSKL 159

Query: 192 PV 193
           PV
Sbjct: 160 PV 161

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 20/178 (11%)

Query: 24  KILGKGAMGTVFLVHDRAADPTAR---CPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           +++GKG  G V+  H    D   +   C  A+K +++ T     E E+  + E  ++   
Sbjct: 1   RVIGKGHFGCVY--HGTLIDSDGQKIHC--AVKSLNRIT--DLEEVEQFLK-EGIIMKDF 53

Query: 81  SHPFLPKLLGSLETDEFLAWAV-PYCPGGDL-NVLRYKQNDRVFSPSV---IRFYLSEII 135
           SHP +  LLG     E     V PY   GDL N +R + ++    P+V   I F L ++ 
Sbjct: 54  SHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHN----PTVKDLIGFGL-QVA 108

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
             +E+L +    +RDL   N ++ +S  V + DF L+R++  K  +   +    K PV
Sbjct: 109 KGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPV 166

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           +VI+  + +++  +  LH +GI +RD+KPEN+L+   G V + DF
Sbjct: 309 NVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDF 353

Length = 507

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARW- 72
           +D   +   K++G G  G V     +   P  +    A+K     TL A    ++R  + 
Sbjct: 1   IDPSYVTIEKVIGGGEFGEVCRGRLKL--PGKKEIDVAIK-----TLKAGSSDKQRLDFL 53

Query: 73  -EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFY 130
            E  ++ +  HP + +L G +     +     Y   G L+  LR  +ND  F+   +   
Sbjct: 54  TEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLR--ENDGKFTVGQLVGM 111

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           L  I   +++L  M   +RDL   NIL+  +    ++DF LSR L
Sbjct: 112 LRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 26  LGKGAMGTVFLVHDRAADPTA-RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           LG+GA G VFL       PT  +   A+K +   TL A+ + +R A     +L+ L H  
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAE----LLTNLQHEH 68

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLN-VLRY-------------KQNDRVFSPSVIRFY 130
           + K  G     + L     Y   GDLN  LR              +Q       S +   
Sbjct: 69  IVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHI 128

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            S+I   + +L +    +RDL   N L+  +  V + DF +SR++
Sbjct: 129 ASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDV 173

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYL 131
           E  V+  + HP L +LLG    +        +   G  N+L Y ++ +R    +V+  Y+
Sbjct: 52  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG--NLLDYLRECNRQEVNAVVLLYM 109

Query: 132 -SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
            ++I  A+E+L      +RDL   N L+ ++  V + DF LSR L+    +   +    K
Sbjct: 110 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR-LMTGDTYTAHA--GAK 166

Query: 191 FPV 193
           FP+
Sbjct: 167 FPI 169

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           ++ + VGT  Y+SPE+  G  +    D WALG + YE+      F   N       ++  
Sbjct: 157 KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSG 216

Query: 304 TPEFVGQRTA--LTDLIQRLLEKDPVKR 329
           T   +  R +  L  LI  +L  DP KR
Sbjct: 217 TFAPISDRYSPDLRQLILSMLNLDPSKR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 29/105 (27%)

Query: 244 RSNSFVGTEEYVSPEVV---RGDGHEFAVDWWALGILTYEM------LYGTTPFRGKNRK 294
           +  SF+GT  +++PEV    R  G++   D WALGI   E+      ++   P R     
Sbjct: 157 KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMR----- 211

Query: 295 ETFRNVLMKTPEFVGQRTALTD----------LIQRLLEKDPVKR 329
                 L    +       L D           I++ L KDP KR
Sbjct: 212 -----ALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKR 251

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 24/140 (17%)

Query: 61  HAKHEAERRARWEIRVLSRLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND 119
           +A  +  R    E+ VL +L H P +  LLG+ E   +L  A+ Y P G  N+L + +  
Sbjct: 33  YASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG--NLLDFLRKS 90

Query: 120 RVF-----------------SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
           RV                  S  ++ F  +++   +++L      +RDL   NIL+ ++ 
Sbjct: 91  RVLETDPAFAIANSTASTLSSQQLLHF-AADVARGMDYLSQKQFIHRDLAARNILVGENY 149

Query: 163 HVTLTDFDLSRN---LVKKT 179
              + DF LSR     VKKT
Sbjct: 150 VAKIADFGLSRGQEVYVKKT 169

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 27/166 (16%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ LG G+ G VF     A D       A+K +  +   +   A R    EI+++ RL H
Sbjct: 10  LRPLGCGSNGLVF----SAVDSDCDKRVAVKKIVLTDPQSVKHALR----EIKIIRRLDH 61

Query: 83  PFLPKL---LGSLETD---------EF-LAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIR 128
             + K+   LG   +D         E    + V      DL NVL         S    R
Sbjct: 62  DNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGP----LSEEHAR 117

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSR 173
            ++ +++  ++++H+  + +RDLKP N+ I     V  + DF L+R
Sbjct: 118 LFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLAR 163

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 17/163 (10%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV------DKSTLHAKHEAERRARWEIRV 76
           L+ LG GA G V+ V  +          ALK +             + ++      E+ +
Sbjct: 5   LEHLGSGAFGCVYKVRKKNNGQNL---LALKEINVHNPAFGKDKRERDKSIGDIVSEVTI 61

Query: 77  L-SRLSHPFLPKLLGS-LETDEF--LAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYL 131
           +  +L HP + +   + LE D    +   +   P G+  N L+ K+    F+   I    
Sbjct: 62  IKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQR--FTEERIWNIF 119

Query: 132 SEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            +++ A+ +LH    I +RDL P NI++ +   VT+TDF L++
Sbjct: 120 VQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAK 162

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 24/128 (18%)

Query: 73  EIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF--------- 122
           E+ VL +L  HP +  LLG+ E   +L  A+ Y P G  N+L + +  RV          
Sbjct: 52  ELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYG--NLLDFLRKSRVLETDPAFAKE 109

Query: 123 --------SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
                   S  +++F  S++   +++L      +RDL   N+L+ ++    + DF LSR 
Sbjct: 110 HGTASTLTSQQLLQF-ASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRG 168

Query: 175 ---LVKKT 179
               VKKT
Sbjct: 169 EEVYVKKT 176

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 15/158 (9%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVV-DKSTLHAKHEAERRARWEIR 75
           L+ LK+LG G  GTV   H     P   + + P A+K + D+S      E        + 
Sbjct: 9   LRKLKLLGSGVFGTV---HKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITD----HML 61

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEI 134
            +  L H ++ +LLG +     L       P G L  L + +Q+     P  +  +  +I
Sbjct: 62  AMGSLDHAYIVRLLG-ICPGASLQLVTQLSPLGSL--LDHVRQHRDSLDPQRLLNWCVQI 118

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
              + +L    + +R+L   NIL++    V + DF ++
Sbjct: 119 AKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVA 156

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L+    L  LG+G   TV+    +  D       ALK +    L  +  A   A  E+ +
Sbjct: 5   LETYIKLDKLGEGTYATVYKGRSKLTDNLV----ALKEI---RLEHEEGAPCTAIREVSL 57

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEII 135
           L  L H  +  L   + T++ L     Y    D ++ +Y  +     +   ++ +L +++
Sbjct: 58  LKDLKHANIVTLHDIIHTEKSLTLVFEYL---DKDLKQYLDDCGNSINMHNVKLFLFQLL 114

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             + + H   + +RDLKP+N+LI + G + L DF L+R
Sbjct: 115 RGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W+LG+   EM  G  P    + KE
Sbjct: 155 ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKE 205

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           GE     +GT  +++PEV+RG+ +  + D W++G +  EM     P+  +        ++
Sbjct: 162 GEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLA-LI 220

Query: 302 MK---------TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            K          PE +     L D+  R LE  P  R      + E+ +H  F+
Sbjct: 221 FKIASATTAPSIPEHLSP--GLRDVTLRCLELQPEDR----PPSRELLKHPVFR 268

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           Q  D   + N+FVGT  +++PEV++   ++   D W+LGI   E+  G  P    N    
Sbjct: 150 QLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP----NSDMH 205

Query: 297 FRNVLMKTPEF-----VGQRT-ALTDLIQRLLEKDPVKR 329
              VL   P+       G+ +    + I   L KDP  R
Sbjct: 206 PMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFR 244

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 38/157 (24%)

Query: 248 FVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-- 304
           +V T  Y +PEV+    H    VD W++G +  EML G T F+GK+  +    +L  T  
Sbjct: 174 YVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGV 233

Query: 305 --PEFVGQ-----------------RTALT-----------DLIQRLLEKDPVKRLGYLR 334
             PEFV +                 R   +           DL++++LE D  KRL    
Sbjct: 234 PGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRL---- 289

Query: 335 GACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLT 371
            A E  EH +F   R D   +  + P+  S E   L+
Sbjct: 290 TATEALEHPYFDSFR-DADEETEQQPYDDSLENEKLS 325

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP- 83
           +L +G  G +F        P       +K V     HA          E  +L  LSH  
Sbjct: 13  LLQEGTFGRIFYGILIDEKPGKEEEVFVKTV---KDHASEIQVTLLLQESCLLYGLSHQN 69

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNV------LRYKQNDRVFSPSVIRFYLSEIICA 137
            LP L   +E  E      PY   G+L +      L    N +  S   +     +I C 
Sbjct: 70  ILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACG 129

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +LH  G+ ++D+   N +I +   V +TD  LSR+L
Sbjct: 130 MSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDL 167

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           EI ++    H  +    GS  + E L   + YC GG L  + +       S   I +   
Sbjct: 56  EIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGP--LSELQIAYVCR 113

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
           E +  + +LH+ G  +RD+K  NIL+  +G V L DF ++  +    A  K
Sbjct: 114 ETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRK 164

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 134 IICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            + A+ +L   + I +RD+KP NIL+ ++G++ L DF +S  LV   A
Sbjct: 116 TVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIA 163

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 18/183 (9%)

Query: 13  PSLDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA 70
           P +  D++  L+ LG GA G V+  L   R  D       A+K + +S      + E   
Sbjct: 1   PEVPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVEL-QVAVKTLPES---CSEQDESDF 56

Query: 71  RWEIRVLSRLSHPFLPKLLG-SLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIR 128
             E  ++S+ +H  + +L+G S E        +    GGDL + LR  +  R   PS + 
Sbjct: 57  LMEALIMSKFNHQNIVRLIGVSFERLPRFI-LLELMAGGDLKSFLRENRP-RPERPSSLT 114

Query: 129 -----FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSRNLVKKTA 180
                F   ++    ++L      +RD+   N L+   G      + DF ++R++ + + 
Sbjct: 115 MKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASY 174

Query: 181 FEK 183
           + K
Sbjct: 175 YRK 177

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYL 131
           E  V++ L HP L +LLG +     L     Y   G L + LR +    +     + F L
Sbjct: 50  EASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFAL 109

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
            ++   +E+L      +RDL   N+L+ +     ++DF L++          Q  ++ K 
Sbjct: 110 -DVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKE-------ASQGQDSGKL 161

Query: 192 PV 193
           PV
Sbjct: 162 PV 163

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 45/209 (21%), Positives = 71/209 (33%), Gaps = 74/209 (35%)

Query: 134 IICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           I+ A+ +L    G+ +RD+KP NIL+  SG+V L DF +S  LV   A            
Sbjct: 123 IVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKA------------ 170

Query: 193 VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                                         KT+SA                      G  
Sbjct: 171 ------------------------------KTRSA----------------------GCA 178

Query: 253 EYVSPEVV----RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKTPEF 307
            Y++PE +        ++   D W+LGI   E+  G  P++    + E    +L + P  
Sbjct: 179 AYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPS 238

Query: 308 VGQRTALTDLIQRLLE----KDPVKRLGY 332
           +      +      ++    KD  KR  Y
Sbjct: 239 LPPNEGFSPDFCSFVDLCLTKDHRKRPKY 267

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 115 YKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH-VTLTDFDLSR 173
           Y +N+      +++ Y  ++  A+ ++H+  I +RDLKP+N+LI  + H + L DF  ++
Sbjct: 160 YARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAK 219

Query: 174 NLV 176
           NL+
Sbjct: 220 NLL 222

Length = 440

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTV+   D A             + +  L  + + E     EI V+    +P +
Sbjct: 28  IGQGASGTVYTAMDVATGQEV-------AIRQMNLQQQPKKELIIN-EILVMRENKNPNI 79

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A+E LH+ 
Sbjct: 80  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR----ECLQALEFLHSN 135

Query: 145 GIAYRDLKPENILIRQSGHVTLTDF 169
            + +RD+K +NIL+   G V LTDF
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE
Sbjct: 159 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKE 209

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 14/183 (7%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPT-ARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           NL+ +  LG+G  G VFL   +  +         +K + K+         RR   E+ + 
Sbjct: 6   NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRR---ELDMF 62

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSP----SVIRFYL 131
            +LSH  + +LLG     E     + Y   GDL   +   K  D    P    +  +  L
Sbjct: 63  RKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVAL 122

Query: 132 SEIIC-AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
              I   ++HL N    +RDL   N L+     V ++   LS+++      E   L N  
Sbjct: 123 CTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNS---EYYKLRNAL 179

Query: 191 FPV 193
            P+
Sbjct: 180 IPL 182

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 63  KHEAERRARWEI----RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN 118
           K+E E+  R E+     ++ +L +P++ +++G  E  E L   +    GG LN     + 
Sbjct: 31  KNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGPLNKFLSGKK 89

Query: 119 DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           D +   +V+   + ++   +++L      +RDL   N+L+    +  ++DF LS+ L
Sbjct: 90  DEITVSNVVEL-MHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKAL 145

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYL 131
           E  ++  L H  L +L G + T   L       P G L + LR K     F  S +  Y 
Sbjct: 46  EAAIMHSLDHENLIRLYGVVLTHP-LMMVTELAPLGSLLDRLR-KDALGHFLISTLCDYA 103

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            +I   + +L +    +RDL   NIL+     V + DF L R L
Sbjct: 104 VQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRAL 147

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 18/163 (11%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALK--VVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           LG+GA G VFL     A+    CP   K  V  K+   A   A +    E  +L+ L H 
Sbjct: 13  LGEGAFGKVFL-----AECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHE 67

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVF----------SPSVIRFYLS 132
            + K  G     + L     Y   GDLN  LR    D V           + S +     
Sbjct: 68  HIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQ 127

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +I   + +L +    +RDL   N L+ ++  V + DF +SR++
Sbjct: 128 QIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDV 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 22/109 (20%)

Query: 247 SFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTP----------FRGKNRKE 295
           SF G+  +++PEV+ +  G+  A D W+LG    EM  G  P          F+    KE
Sbjct: 160 SFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKE 219

Query: 296 TFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
                L   P+ +       D I + L++DP  R      A E+ EH F
Sbjct: 220 -----LPPIPDHLSDE--AKDFILKCLQRDPSLRP----TAAELLEHPF 257

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 24/165 (14%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
              P   LDN    KI G+G+ G V +  D++         A+K +D        + +RR
Sbjct: 14  PGDPRSYLDNFV--KI-GEGSTGIVCIATDKSTGRQV----AVKKMDLR------KQQRR 60

Query: 70  ARW--EIRVLSRLSHPFLPKLLGS-LETDEFLAWAV-PYCPGGDL-NVLRYKQNDRVFSP 124
                E+ ++    HP + ++  S L  DE   W V  +  GG L +++ + + +     
Sbjct: 61  ELLFNEVVIMRDYQHPNIVEMYSSYLVGDEL--WVVMEFLEGGALTDIVTHTRMNEEQIA 118

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           +V    L     A+  LH  G+ +RD+K ++IL+   G V L+DF
Sbjct: 119 TVCLAVLK----ALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 37/162 (22%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-----EIRVL 77
           L+ +G G+ G V+   D               + K +   K   E+   W     E+R L
Sbjct: 20  LREIGHGSFGAVYFARDVRNSEVV-------AIKKMSYSGKQSNEK---WQDIIKEVRFL 69

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI-I 135
            +L HP   +  G     E  AW V  YC G   ++L   +             L E+ I
Sbjct: 70  QKLRHPNTIQYRGCY-LREHTAWLVMEYCLGSASDLLEVHKKP-----------LQEVEI 117

Query: 136 CAIEH--------LHNMGIAYRDLKPENILIRQSGHVTLTDF 169
            A+ H        LH+  + +RD+K  NIL+ + G V L DF
Sbjct: 118 AAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D   L  LK LG G  G V L   R     A     +K++ +  +     +E     E 
Sbjct: 1   IDPSELTFLKELGSGQFGVVHLGKWRGKIDVA-----IKMIREGAM-----SEDDFIEEA 50

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+ +LSHP L +L G       +     Y   G L N LR  +         +    S+
Sbjct: 51  KVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLR--ERKGKLGTEWLLDMCSD 108

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L + G  +RDL   N L+ +   V ++DF L+R ++     +  S    KFPV
Sbjct: 109 VCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDD---QYTSSQGTKFPV 165

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 27/103 (26%), Positives = 49/103 (47%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           +  S VGT  +++PEV+    +   VD W+LGI+  EM+ G  P+  +   +  R +   
Sbjct: 174 KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDN 233

Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            P  V     ++ +++  L+   V+       A E+ +H F K
Sbjct: 234 LPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLK 276

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKG  G+V     ++ D + +   A+K++ K+ + +  + E   R E   +    HP
Sbjct: 5   RMLGKGEFGSVREAQLKSEDGSFQ-KVAVKML-KADIFSSSDIEEFLR-EAACMKEFDHP 61

Query: 84  FLPKLLG-SLETDEFLAWAVP-----YCPGGDLN--VLRYKQNDRVFSPSV---IRFYLS 132
            + KL+G SL +       +P     +   GDL+  +L  +  +  F+  +   +RF + 
Sbjct: 62  NVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMI- 120

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           +I   +E+L +    +RDL   N ++ ++  V + DF LS+ +     + +     +K P
Sbjct: 121 DIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCA--SKLP 178

Query: 193 V 193
           V
Sbjct: 179 V 179

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 33/121 (27%)

Query: 242 GERSNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGK--------- 291
           GE    +V T  Y +PE++ GD  +  AVD WA+G L  EML G   F G          
Sbjct: 154 GEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHI 213

Query: 292 -----NRKETFRNVLMKTPEFVGQRTA------------------LTDLIQRLLEKDPVK 328
                N     + +  K P F G R                    + DL ++ L  DP  
Sbjct: 214 IKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDD 273

Query: 329 R 329
           R
Sbjct: 274 R 274

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ + +  LG G  G VF V  +   P+     A K++    L  K     +   E++VL
Sbjct: 5   DDFEKISELGAGNGGVVFKVSHK---PSGLI-MARKLIH---LEIKPAIRNQIIRELQVL 57

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EIIC 136
              + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +I 
Sbjct: 58  HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAVIK 114

Query: 137 AIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 115 GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 159

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           S   ++ +L +I+  +++LH+ GI +RD+KP N+L+  +  + + DF L+R
Sbjct: 101 SSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +GKG  G V+               A+K   +STL    + +R+   E  +L +  HP +
Sbjct: 3   IGKGNFGDVY-----KGVLKGNTEVAVKTC-RSTLPP--DLKRKFLQEAEILKQYDHPNI 54

Query: 86  PKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
            KL+G     + +   +   PGG  L  LR K+ +R+    +++  L +    +E+L + 
Sbjct: 55  VKLIGVCVQKQPIYIVMELVPGGSLLTFLR-KKKNRLTVKKLLQMSL-DAAAGMEYLESK 112

Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              +RDL   N L+ ++  + ++DF +SR
Sbjct: 113 NCIHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)

Query: 26  LGKGAMGTVFLVHDRAADPTA-RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           LG+GA G VFL       P   +   A+K + +++  A+ + +R A     +L+ L H  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAE----LLTVLQHQH 68

Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLN-VLRY---------KQNDRVFSPSVIRFYL--- 131
           + +  G       L     Y   GDLN  LR             D       +   L   
Sbjct: 69  IVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIA 128

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           S+I   + +L ++   +RDL   N L+ Q   V + DF +SR++
Sbjct: 129 SQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 172

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRVLSRLS 81
           K++G G  G VF    +          A+K     TL   +  ++R  +  E  ++ + S
Sbjct: 11  KVIGAGEFGEVFRGILKMPG-RKEVAVAIK-----TLKPGYTEKQRQDFLSEASIMGQFS 64

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIEH 140
           H  + +L G +   +       Y   G L+  +Y + +D  FS   +   L  I   +++
Sbjct: 65  HHNIIRLEGVVTKFKPAMIITEYMENGALD--KYLRDHDGEFSSYQLVGMLRGIAAGMKY 122

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           L +M   +RDL   NIL+  +    ++DF LSR L
Sbjct: 123 LSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVL 157

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+G  G VF    RA D T   P A+K   + TL    +A  +   E R+L + SHP +
Sbjct: 3   IGRGNFGEVFSGRLRA-DNT---PVAVKSC-RETLPPDLKA--KFLQEARILKQYSHPNI 55

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            +L+G     + +   +    GGD       +  R+    +I+  +      +E+L +  
Sbjct: 56  VRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQM-VENAAAGMEYLESKH 114

Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLSR 173
             +RDL   N L+ +   + ++DF +SR
Sbjct: 115 CIHRDLAARNCLVTEKNVLKISDFGMSR 142

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 32/185 (17%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVV----DKSTLHAKHEAERRAR 71
             +N++ ++ +G+GA G VF    RA       PF +  V    ++++   + + +R A 
Sbjct: 3   PRNNIEYVRDIGQGAFGRVF--QARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 60

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLR----YKQNDRVFSPSV 126
               +++   HP + KLLG     + +     Y   GDLN  LR      Q     S S 
Sbjct: 61  ----LMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSS 116

Query: 127 IRFYLSEIICAIEHLHNM--------GIAY--------RDLKPENILIRQSGHVTLTDFD 170
            R         +     +        G+AY        RDL   N L+ ++  V + DF 
Sbjct: 117 ARKC-GLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFG 175

Query: 171 LSRNL 175
           LSRN+
Sbjct: 176 LSRNI 180

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 16/155 (10%)

Query: 24  KILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRVLSR 79
           + +G+G  G V+  +      +   +   A+K     T         R ++  E  ++ +
Sbjct: 12  RCIGEGQFGDVYQGVYMSPENE---KIAVAVKTCKNCT-----SPSVREKFLQEAYIMRQ 63

Query: 80  LSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
             HP + KL+G +  +    W V    P G+L          +   S+I  Y  ++  A+
Sbjct: 64  FDHPHIVKLIGVITENP--VWIVMELAPLGELRSYLQVNKYSLDLASLI-LYSYQLSTAL 120

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            +L +    +RD+   N+L+     V L DF LSR
Sbjct: 121 AYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSR 155

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 245 SNSFVGTEEYVSPEVV-RG-DGHEFAVDWWALGILTYEMLYGTTPFR--GKNRKETFRNV 300
           + +F GT +Y++PEV+ +G  G+    D W+LG    EM  G  PF   G+ +   F+  
Sbjct: 166 TETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVG 225

Query: 301 LMKT-PEFVGQRTA-LTDLIQRLLEKDPVKR 329
           + K  PE     +A   + I R  E DP KR
Sbjct: 226 MFKIHPEIPESLSAEAKNFILRCFEPDPDKR 256

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTV+   D A             + +  L  + + E     EI V+    +P +
Sbjct: 27  IGQGASGTVYTAIDIATGQEV-------AIKQMNLQQQPKKELIIN-EILVMRENKNPNI 78

Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A++ LH+ 
Sbjct: 79  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR----ECLQALDFLHSN 134

Query: 145 GIAYRDLKPENILIRQSGHVTLTDF 169
            + +RD+K +NIL+   G V LTDF
Sbjct: 135 QVIHRDIKSDNILLGMDGSVKLTDF 159

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 244 RSNSFVGTEEYVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPF 288
           R N+F+GT  +++PEV+  D      ++F  D W+LGI   EM  G  P 
Sbjct: 167 RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPL 216

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)

Query: 18  DNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           D+ + L  LG G  G V  V H  +    AR     K++    L  K     +   E++V
Sbjct: 1   DDFEKLGELGAGNGGVVTKVLHRPSGLIMAR-----KLIH---LEIKPAIRNQIIRELKV 52

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI-I 135
           L   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   L +I I
Sbjct: 53  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PENI---LGKISI 106

Query: 136 CAIEHL----HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
             +  L        I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 107 AVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 155

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 67/343 (19%), Positives = 128/343 (37%), Gaps = 100/343 (29%)

Query: 15  LDLDNLKALKILGKGAMGTVFL-VHDRAADPTARCPFALK-VVDKSTLHAKHEAERRARW 72
           L  + +  ++ LG+G+ G V+  +             A+K V + +++      ER    
Sbjct: 3   LPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMR-----ERIEFL 57

Query: 73  -EIRVLSRLSHPFLPKLLGSLETD-------EFLAWAVPYCPGGDL-NVLRYK-----QN 118
            E  V+   +   + +LLG + T        E +A        GDL + LR +      N
Sbjct: 58  NEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAK-------GDLKSYLRSRRPEAENN 110

Query: 119 DRVFSPSVIRFYL--SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
             +  P++ +F    +EI   + +L      +RDL   N ++ +   V + DF ++R++ 
Sbjct: 111 PGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIY 170

Query: 177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPEN-KTGLKKTKSARVSPVSRR 235
           +   + K         +LPV            RW+   PE+ K G+  TKS         
Sbjct: 171 ETDYYRKGGKG-----LLPV------------RWMA--PESLKDGVFTTKS--------- 202

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRK 294
                                             D W+ G++ +EM      P++G + +
Sbjct: 203 ----------------------------------DVWSFGVVLWEMATLAEQPYQGLSNE 228

Query: 295 ETFRNVL----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYL 333
           E  + V+    +  PE    +  L +L++   + +P  R  +L
Sbjct: 229 EVLKFVIDGGHLDLPENCPDK--LLELMRMCWQYNPKMRPTFL 269

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG----KNRKETFR 298
            R  S VGT  +++PE++    +   VD W+LGI+  EM+ G  P+      K  K    
Sbjct: 171 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRD 230

Query: 299 NVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
           N+  K         +L   + RLL +DP +R      A E+ +H F 
Sbjct: 231 NLPPKLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 37/162 (22%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-----EIRVL 77
           L+ +G G+ G V+   D   +       A+K   K +   K   E+   W     E+R L
Sbjct: 20  LREIGHGSFGAVYFARDVRTNEVV----AIK---KMSYSGKQSNEK---WQDIIKEVRFL 69

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI-- 134
            +L HP   +  G     E  AW V  YC G   ++L            V +  L E+  
Sbjct: 70  QQLRHPNTIEYKGCY-LREHTAWLVMEYCLGSASDIL-----------EVHKKPLQEVEI 117

Query: 135 --IC-----AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
             IC      + +LH+    +RD+K  NIL+ + G V L DF
Sbjct: 118 AAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   E+  G  P    + KE
Sbjct: 159 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKE 209

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 36/167 (21%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV---DKSTLHAKHEAERRARWEIRVLSR 79
           L  +G+GA G V     +   PT     A+K +   +  T       +R  R EI++L R
Sbjct: 10  LSYIGEGAYGMVCSATHK---PT-GVKVAIKKISPFEHQTF-----CQRTLR-EIKILRR 59

Query: 80  LSHPFLPKLL-----GSLET-------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI 127
             H  +  +L      S E+        E +          DL  L   Q+    S   I
Sbjct: 60  FKHENIIGILDIIRPPSFESFNDVYIVQELME--------TDLYKLIKTQH---LSNDHI 108

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +++L +I+  ++++H+  + +RDLKP N+L+  +  + + DF L+R 
Sbjct: 109 QYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARI 155

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 233 SRRQQSF-DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF 288
           S+R Q+   +G    S  GT  ++SPEV+ G+G+    D W++G    EML    P+
Sbjct: 151 SKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPW 207

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
           R+IL R + +  +N    K    A++      +Q  D+ E + + VGT  Y+SPE+ +  
Sbjct: 120 RKILHRDIKS--QNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNR 177

Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKN 292
            +    D W+LG + YE+     PF G N
Sbjct: 178 PYNNKTDIWSLGCVLYELCTLKHPFEGNN 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL--MKTP 305
           +V T  Y +PEV+ G G++  VD W++G +  E++ G+  F+G +  + +  V+  + TP
Sbjct: 182 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTP 241

Query: 306 --EFVGQRTALTDLIQRLLEKDP 326
             EF+     L   ++  +E  P
Sbjct: 242 SAEFM---NRLQPTVRNYVENRP 261

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           K  +++GKG+ G V      A D       A+K ++    H   +A R  R EI++L  L
Sbjct: 3   KIQEVIGKGSYGVVC----SAIDTHTGEKVAIKKINDVFEHVS-DATRILR-EIKLLRLL 56

Query: 81  SHPFLPKLLGSL---ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            HP + ++   +      EF   + V      DL+ +  K ND + +P   +F+L +++ 
Sbjct: 57  RHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQV-IKANDDL-TPEHHQFFLYQLLR 114

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           A++++H   + +RDLKP+NIL      + + DF L+R
Sbjct: 115 ALKYIHTANVFHRDLKPKNILANADCKLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK-STLHAKHEAERRARWEIRVL 77
               +K L  G+ G VF+    A  P    P  LK+  K +TL            E  +L
Sbjct: 67  GYTVIKTLTPGSEGRVFV----ATKPGQPDPVVLKIGQKGTTL-----------IEAMLL 111

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
             ++HP + ++  +L +       +P+        L   +  R            +I+  
Sbjct: 112 QNVNHPSVIRMKDTLVSGAITCMVLPHYSSDLYTYL--TKRSRPLPIDQALIIEKQILEG 169

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
           + +LH   I +RD+K ENI I     V + D   ++  V   AF
Sbjct: 170 LRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAF 213

Length = 357

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARW- 72
           +D+  +K  +++G G  G V     R   P  R    A+K     TL + +  ++R  + 
Sbjct: 1   IDVSCVKIEEVIGAGEFGEVC--RGRLKLPGKREIFVAIK-----TLKSGYTEKQRRDFL 53

Query: 73  -EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  ++ +  HP +  L G +     +     +   G L+    +QND  F+   +   L
Sbjct: 54  SEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSF-LRQNDGQFTVIQLVGML 112

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             I   +++L  M   +RDL   NIL+  +    ++DF LSR L
Sbjct: 113 RGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTP 287
           Q  D   + N+FVGT  +++PEV++   ++   D W+LGI   E+  G  P
Sbjct: 150 QLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPP 200

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ + +  LG G  G V  V  + +        A K++    L  K     +   E++VL
Sbjct: 5   DDFERISELGAGNGGVVTKVQHKPS----GLIMARKLIH---LEIKPAIRNQIIRELQVL 57

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EIIC 136
              + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  ++ 
Sbjct: 58  HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKEAKRI--PEEILGKVSIAVLR 114

Query: 137 AIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 115 GLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 159

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 250 GTEEYVSPEVVRGD----GHEFAVDWWALGILTYEMLYGTTPF-RGKNRKETFRNVLMKT 304
           G + Y++PE +  +    G++   D W+LGI   E+  G  P+   K   +  + V+ + 
Sbjct: 165 GCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEP 224

Query: 305 PEFVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
              +          D + + L+K+  +R  Y     E+ +H FF+
Sbjct: 225 SPQLPAEKFSPEFQDFVNKCLKKNYKERPNYP----ELLQHPFFE 265

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 27/154 (17%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G G+ G V+     A +       A+K +  S     +E  +    E++ L +L HP  
Sbjct: 29  IGHGSFGAVYF----ATNSHTNEVVAVKKMSYSGKQT-NEKWQDIIKEVKFLQQLKHPNT 83

Query: 86  PKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI-ICAIEH--- 140
            +  G     E  AW V  YC G   ++L   +             L E+ I AI H   
Sbjct: 84  IEYKGCY-LKEHTAWLVMEYCLGSASDLLEVHKKP-----------LQEVEIAAITHGAL 131

Query: 141 -----LHNMGIAYRDLKPENILIRQSGHVTLTDF 169
                LH+  + +RD+K  NIL+ + G V L DF
Sbjct: 132 QGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADF 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG1152	772	consensus Signal transduction serine/threonine kin	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
KOG0576	829	consensus Mitogen-activated protein kinase kinase	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.98
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.97
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.97
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.96
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.96
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.95
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.95
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.94
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.93
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.92
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.91
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.91
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.9
PRK12274	218	serine/threonine protein kinase; Provisional	99.9
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.9
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.89
PRK10345	210	hypothetical protein; Provisional	99.88
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.86
smart00090	237	RIO RIO-like kinase.	99.85
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.83
PRK14879	211	serine/threonine protein kinase; Provisional	99.83
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.81
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.8
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.8
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.79
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.75
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.74
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.72
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.67
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.63
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.58
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.53
KOG1243	690	consensus Protein kinase [General function predict	99.48
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.47
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.46
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.45
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.38
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.28
KOG3087	229	consensus Serine/threonine protein kinase [General	99.25
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.21
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.21
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.13
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	99.08
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.04
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.87
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.79
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.7
COG4248	637	Uncharacterized protein with protein kinase and he	98.69
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.62
PRK09902	216	hypothetical protein; Provisional	98.6
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.56
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.48
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.45
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.43
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.38
PF01636	239	APH: Phosphotransferase enzyme family This family	98.34
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.24
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.17
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.16
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.11
PLN02876	822	acyl-CoA dehydrogenase	98.09
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.94
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.84
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.67
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.66
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.57
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.53
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.48
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.46
PRK10593	297	hypothetical protein; Provisional	97.38
PRK05231	319	homoserine kinase; Provisional	97.31
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.26
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.21
PLN02236	344	choline kinase	96.98
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	96.95
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.94
KOG2270	520	consensus Serine/threonine protein kinase involved	96.83
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.78
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.7
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.57
PLN02756	418	S-methyl-5-thioribose kinase	96.19
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	95.94
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	95.74
PTZ00384	383	choline kinase; Provisional	95.72
PRK12396	409	5-methylribose kinase; Reviewed	95.61
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	94.84
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	94.74
PRK06148	1013	hypothetical protein; Provisional	94.39
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	94.1
PHA03111	444	Ser/Thr kinase; Provisional	93.59
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	93.36
KOG1236	565	consensus Predicted unusual protein kinase [Genera	93.32
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	93.29
PRK10271	188	thiK thiamine kinase; Provisional	93.29

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-70  Score=508.39  Aligned_cols=287  Identities=41%  Similarity=0.737  Sum_probs=259.3

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .....++|+++++||+|+||+||+|+.+.++    +.||+|+++|..+..+ .....+..|..||.+++||+||+++..|
T Consensus        20 ~~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~----kiYAmKvl~K~~iv~~-~e~~~~~~Er~IL~~v~hPFiv~l~ysF   94 (357)
T KOG0598|consen   20 EMVGPDDFEILKVIGKGSFGKVFQVRKKDTG----KIYAMKVLKKKKIVEK-KEVRHTKAERNILSKIKHPFIVKLIYSF   94 (357)
T ss_pred             ccCChhheeeeeeeeccCCceEEEEEEcccC----ceeehhhhhhhHhhhh-hhHHHHHHHHHHHHhCCCCcEeeeEEec
Confidence            4678999999999999999999999998654    4599999999887544 4567788899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      |+.+.+|||+||+.||+|...+.++  +.|+|..+++|+++|+.||.|||++|||||||||+|||+|..|+++|+|||||
T Consensus        95 Qt~~kLylVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~  172 (357)
T KOG0598|consen   95 QTEEKLYLVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLC  172 (357)
T ss_pred             ccCCeEEEEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccc
Confidence            9999999999999999997766654  45999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +...                                                               ..+..+.++|||+
T Consensus       173 k~~~---------------------------------------------------------------~~~~~t~tfcGT~  189 (357)
T KOG0598|consen  173 KEDL---------------------------------------------------------------KDGDATRTFCGTP  189 (357)
T ss_pred             hhcc---------------------------------------------------------------cCCCccccccCCc
Confidence            8542                                                               3445667899999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCCCC-CChHHHHHHHHhhhhCCCccC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEFVG-QRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~~~-~~~~~~dli~~~L~~dP~~R~  330 (412)
                      .|||||++.+.+|+.++||||||+++|||++|.+||.+.+...++.+|.... +..+. .+.+++|||+++|.+||++|+
T Consensus       190 eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  190 EYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             cccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhc
Confidence            9999999999999999999999999999999999999999999999999887 66666 789999999999999999999


Q ss_pred             CCCCChhhhhcCCCCCCCCchhh-cccCCCCCCCCCCCch
Q 042539          331 GYLRGACEIKEHVFFKGVRWDLL-TDVLRPPFIPSREEND  369 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~~~~~~-~~~~~pp~~p~~~~~~  369 (412)
                      +...++.++.+||||.+++|+.+ .....|||.|......
T Consensus       270 g~~~d~~~ik~HpfF~~inW~~l~~k~l~PpF~P~~~~~~  309 (357)
T KOG0598|consen  270 GGPGDAEEIKRHPFFKGINWEKLLAKKLSPPFKPNVTGLE  309 (357)
T ss_pred             CCCCChHHhhcCcccccCCHHHHHhcCCCCCeecCCCCcc
Confidence            76668999999999999999855 5577899999876654

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=3.3e-69  Score=522.73  Aligned_cols=332  Identities=36%  Similarity=0.610  Sum_probs=265.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+.++||+++++||+|+||.||+|+.+.++..    ||||+++|+.+... .....++.|..+|....+++||+||+.
T Consensus       135 R~r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~i----yAmK~LkKS~M~~~-~Qv~hV~aERdiL~~~ds~~vVKLyYs  209 (550)
T KOG0605|consen  135 RTRLSLDDFELLKVIGKGAFGEVRLARKKDTGEI----YAMKILKKSEMLKK-NQVEHVRAERDILAEVDSPWVVKLYYS  209 (550)
T ss_pred             cccCCcccchhheeeccccceeEEEEEEccCCcE----EeeecccHHHHHhh-hhHHHHHHHHHHhhhcCCCcEEEEEEE
Confidence            3477899999999999999999999999997766    99999999988654 446778889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      |++.+++||||||++|||+..++...  +.|+++++++|+++++.||+.||++|+|||||||+|+|||..||+||+||||
T Consensus       210 FQD~~~LYLiMEylPGGD~mTLL~~~--~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGL  287 (550)
T KOG0605|consen  210 FQDKEYLYLIMEYLPGGDMMTLLMRK--DTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGL  287 (550)
T ss_pred             ecCCCeeEEEEEecCCccHHHHHHhc--CcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccc
Confidence            99999999999999999998888765  4599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhc----ccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          172 SRNLVKKTAFEKQS----LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       172 a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |..+..........    .+.......+......                 .......+.+.....+   .-..-....+
T Consensus       288 s~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~w---~~nrr~~a~S  347 (550)
T KOG0605|consen  288 STGLDKKHRIESYRLDEQMQINLSEAKPSDFPKF-----------------NTPRSTMSRREQLQTW---KRNRRQLAYS  347 (550)
T ss_pred             cchhhhhhhhhhhcchhhhhhhhccCCCcccccc-----------------ccccchhhHHHHHHHH---Hhhhhhhhhc
Confidence            98775443221100    0000000000000000                 0000000000000000   0012234567


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhh
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L  322 (412)
                      .+|||.|||||++.+.+|+..+||||||||+||||.|.+||.+.+..+++++|+...     |.-..++++++|||.+||
T Consensus       348 tVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll  427 (550)
T KOG0605|consen  348 TVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLL  427 (550)
T ss_pred             ccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999998754     444556799999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCchhhhh
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEK  373 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~~~~~~  373 (412)
                      . ||++|++ ..+++||++||||++++|+.+.+.. |||+|...+...+.+
T Consensus       428 ~-d~~~RLG-~~G~~EIK~HPfF~~v~W~~l~~~~-apfvP~v~~~~DT~y  475 (550)
T KOG0605|consen  428 C-DPENRLG-SKGAEEIKKHPFFKGVDWDHLREMP-APFVPQVNSELDTQY  475 (550)
T ss_pred             c-CHHHhcC-cccHHHHhcCCccccCCcchhhcCC-CCCCCCCCCcccccc
Confidence            8 9999998 5689999999999999999998865 999999888765543

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6.6e-67  Score=492.44  Aligned_cols=347  Identities=48%  Similarity=0.782  Sum_probs=277.4

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      .....+.+++|++++.||.|.-|+||+|+.+.++    +.+||||+.|..+.. .....++..|.+||+.++||++++||
T Consensus        69 ~~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~----~~fAmKVmdK~~l~~-rkKl~Ra~tE~eIL~~lDHPFlPTLY  143 (459)
T KOG0610|consen   69 SKDGSLGLRHFRLLKRLGCGDIGTVYLVELRGTN----CLFAMKVMDKESLAS-RKKLKRAQTEREILSLLDHPFLPTLY  143 (459)
T ss_pred             cCCCccCHHHHHHHHHcCCCCceeEEEEEecCCC----ceEEEEEecHHHHhh-hhHHHHHHHHHHHHHhcCCCccchhh
Confidence            3456889999999999999999999999998865    559999999988754 45577888899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      ..|++++.+|+|||||.||+|..+++.+..+.|+++.|++|+++++.||+|||-.|||+||||||||||.++|++.|+||
T Consensus       144 a~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDF  223 (459)
T KOG0610|consen  144 ASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDF  223 (459)
T ss_pred             heeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhcc-CCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHA-LPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      -|+....-.......+.    .+.  ....+......+...... ....+.+-+...+..  .+...-.....+.++++|
T Consensus       224 DLS~~~~~~Pt~~~s~~----~~~--~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~--~~~p~~~aep~~~RSnSF  295 (459)
T KOG0610|consen  224 DLSLRCPVSPTLVKSSS----PRS--SGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESAS--RSLPELVAEPTGARSNSF  295 (459)
T ss_pred             cccccCCCCCeeeccCC----CCC--CCCCcccccccccccccchhcccccccccccccc--ccchhhhcCCCCcccccc
Confidence            99987632222111000    000  000000000000000000 000000000011111  111112234556788999


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCC---hHHHHHHHHhhhhC
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQR---TALTDLIQRLLEKD  325 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~---~~~~dli~~~L~~d  325 (412)
                      +||-.|+|||++.|.+++.++|||+||+.+|||++|..||.|.+..+++.+|+.....++..+   ..++|||+++|.+|
T Consensus       296 VGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKd  375 (459)
T KOG0610|consen  296 VGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKD  375 (459)
T ss_pred             ccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999888777654   89999999999999


Q ss_pred             CCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCchh
Q 042539          326 PVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDL  370 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~~~  370 (412)
                      |.+|+++.++|.||++||||++++|. +-...+||++|...+...
T Consensus       376 P~kRlg~~rGA~eIK~HpFF~gVnWa-Lir~~~PP~iP~~~d~~~  419 (459)
T KOG0610|consen  376 PSKRLGSKRGAAEIKRHPFFEGVNWA-LIRCARPPEIPKPVDGGL  419 (459)
T ss_pred             hhhhhccccchHHhhcCccccCCChh-heeccCCCcCCCccccCc
Confidence            99999999999999999999999999 556789999999876654

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-66  Score=471.86  Aligned_cols=277  Identities=40%  Similarity=0.744  Sum_probs=255.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ...+++|+++++||.|+||+|.+++++.++..    ||+|++++..+. +....++..+|.++|+.+.||++++|++.|.
T Consensus        40 ~~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~y----YAmKvL~k~~vV-klKQveH~~nEk~vL~~v~~PFlv~l~~t~~  114 (355)
T KOG0616|consen   40 PYSLQDFERLKTLGTGSFGRVHLVREKHSGNY----YAMKVLDKQKVV-KLKQVEHTHNEKRVLKAVSHPFLVKLYGTFK  114 (355)
T ss_pred             CcchhhhhheeeeccCccceEEEEEEccCCce----eehhhcCHHHHH-HHHHHHHHhhHHHHHhhccCceeEEEEEeec
Confidence            38999999999999999999999999987666    999999988763 3445677888999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +.+++|+||||++||.|.++++..+  +|++..+++|++||+.||+|||+++|++|||||||||+|++|++||+|||+|+
T Consensus       115 d~~~lymvmeyv~GGElFS~Lrk~~--rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK  192 (355)
T KOG0616|consen  115 DNSNLYMVMEYVPGGELFSYLRKSG--RFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAK  192 (355)
T ss_pred             cCCeEEEEEeccCCccHHHHHHhcC--CCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceE
Confidence            9999999999999999998887654  59999999999999999999999999999999999999999999999999998


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ...                                                                  .++.++||||.
T Consensus       193 ~v~------------------------------------------------------------------~rT~TlCGTPe  206 (355)
T KOG0616|consen  193 RVS------------------------------------------------------------------GRTWTLCGTPE  206 (355)
T ss_pred             Eec------------------------------------------------------------------CcEEEecCCcc
Confidence            652                                                                  34668999999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |+|||+++..+|++++|||||||++|||+.|.+||.+.+...++.+|+.+...+|. .+.+++|||.++|++|-++|++.
T Consensus       207 YLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R~gn  286 (355)
T KOG0616|consen  207 YLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKRFGN  286 (355)
T ss_pred             ccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHhhhcC
Confidence            99999999999999999999999999999999999999999999999999988887 48999999999999999999887


Q ss_pred             CC-ChhhhhcCCCCCCCCchhh-cccCCCCCCC
Q 042539          333 LR-GACEIKEHVFFKGVRWDLL-TDVLRPPFIP  363 (412)
Q Consensus       333 ~~-~~~e~l~h~ff~~~~~~~~-~~~~~pp~~p  363 (412)
                      .. +.++++.||||++++|..+ +....+|+.|
T Consensus       287 lknG~~dIk~H~wF~~v~W~~i~~r~ie~P~~p  319 (355)
T KOG0616|consen  287 LKNGVEDIKNHPWFKGVDWEAILQRKIEPPFEP  319 (355)
T ss_pred             cCCCccccccCcccccccHHHHhhccccCCCCC
Confidence            64 8999999999999999855 4567889988

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-66  Score=512.12  Aligned_cols=304  Identities=35%  Similarity=0.709  Sum_probs=269.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~   91 (412)
                      ..+.+++|.++++||+|+||+|++|..+.++..    ||||+++|..+-.+. ....++.|.+|+.... ||+++.|+.+
T Consensus       363 ~~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~----yAIK~LKK~~Il~~d-~Ve~~~~EkrI~~la~~HPFL~~L~~~  437 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFGKVLLAELKGTNEY----YAIKVLKKGDILQRD-EVESLMCEKRIFELANRHPFLVNLFSC  437 (694)
T ss_pred             CcccccceEEEEEeccCcCceEEEEEEcCCCcE----EEEEEeeccceeccc-cHHHHHHHHHHHHHhccCCeEeecccc
Confidence            478999999999999999999999999986655    999999999875544 4566778999999996 9999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      |++.+++|+||||+.|||+...   +..+.|++..+++|+++|+.||+|||++||||||||.+|||+|..|++||+|||+
T Consensus       438 fQT~~~l~fvmey~~Ggdm~~~---~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGl  514 (694)
T KOG0694|consen  438 FQTKEHLFFVMEYVAGGDLMHH---IHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGL  514 (694)
T ss_pred             cccCCeEEEEEEecCCCcEEEE---EecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEeccccc
Confidence            9999999999999999996433   3335699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++...                                                               ..+.+++|||||
T Consensus       515 cKe~m---------------------------------------------------------------~~g~~TsTfCGT  531 (694)
T KOG0694|consen  515 CKEGM---------------------------------------------------------------GQGDRTSTFCGT  531 (694)
T ss_pred             ccccC---------------------------------------------------------------CCCCccccccCC
Confidence            98642                                                               345678899999


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |.|||||++.+..|+.++|||||||+|||||.|+.||.|.++++++..|+...+.+|. ++.++.+++++||.+||++|+
T Consensus       532 pey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRL  611 (694)
T KOG0694|consen  532 PEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRL  611 (694)
T ss_pred             hhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHHHHHHHHhccCccccc
Confidence            9999999999999999999999999999999999999999999999999998888775 689999999999999999999


Q ss_pred             CC-CCChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCCchhhhhhhcCCCCChhhhhhccCCCCCCCCC
Q 042539          331 GY-LRGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPP  398 (412)
Q Consensus       331 ~~-~~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (412)
                      ++ .++++++++||||+.++|+.+. ...+|||+|...++.           |.+++-+.+....|...|
T Consensus       612 G~~e~d~~~i~~hpFFr~i~w~~L~~r~i~PPf~P~i~~~~-----------D~snFd~eFt~e~p~Lt~  670 (694)
T KOG0694|consen  612 GSGERDAEDIKKHPFFRSIDWDDLLNRRIKPPFVPTIKGPE-----------DVSNFDEEFTSEKPALTP  670 (694)
T ss_pred             CCCCCCchhhhhCCccccCCHHHHhhccCCCCCCcccCChh-----------hhcccchhhhcCCCccCC
Confidence            97 3569999999999999998664 477999999976654           445555666666666666

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-64  Score=485.20  Aligned_cols=286  Identities=38%  Similarity=0.607  Sum_probs=249.9

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~   92 (412)
                      .-...||++++.||+|+|++|++|+++.++..    |||||+.|..+ .++...+.+.+|..+|.+| .||.|++||.+|
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~ke----YAiKVl~K~~I-ike~KvkYV~~Ek~~l~~L~~hPgivkLy~TF  143 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKE----YAIKVLDKRYI-IKEKKVKYVTREKEALTQLSGHPGIVKLYFTF  143 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCce----eeHhhhhHHHH-HhhcccchhhHHHHHHHHhhCCCCeEEEEEEe
Confidence            56788999999999999999999999986655    99999999887 3455667788899999999 699999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      +++..+|+|+||+++|+|..++...+  .|++..+++|++||+.||+|||++|||||||||||||+|.+|++||+|||.|
T Consensus       144 QD~~sLYFvLe~A~nGdll~~i~K~G--sfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsA  221 (604)
T KOG0592|consen  144 QDEESLYFVLEYAPNGDLLDLIKKYG--SFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSA  221 (604)
T ss_pred             ecccceEEEEEecCCCcHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeecccc
Confidence            99999999999999999988887764  5999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+........       .|   ..                                        ......+..+||||.
T Consensus       222 K~l~~~~~~~~-------~~---~~----------------------------------------~~~a~s~~~SFVGTA  251 (604)
T KOG0592|consen  222 KILSPSQKSQE-------NP---VD----------------------------------------PNQASSRRSSFVGTA  251 (604)
T ss_pred             ccCChhhcccc-------Cc---cC----------------------------------------cccccCcccceeeee
Confidence            98743211000       00   00                                        001112246899999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      .|.+||+|.+...+..+|+||||||||+|+.|.+||.+.++..+|++|+.....++ +.++.++|||.++|..||.+|+ 
T Consensus       252 eYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rl-  330 (604)
T KOG0592|consen  252 EYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRL-  330 (604)
T ss_pred             cccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHccCccccc-
Confidence            99999999999999999999999999999999999999999999999998887775 5689999999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCCCchhhcccCCCC
Q 042539          332 YLRGACEIKEHVFFKGVRWDLLTDVLRPP  360 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~~~~~~~~~~~pp  360 (412)
                         |+++|++||||.+++|+.+.....|+
T Consensus       331 ---t~~qIk~HpFF~~Vdw~nlw~~~PP~  356 (604)
T KOG0592|consen  331 ---TSQQIKAHPFFEGVDWENLWQQTPPK  356 (604)
T ss_pred             ---cHHHHhhCcccccCChhhhhhcCCCc
Confidence               68999999999999999887765554

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.5e-61  Score=472.72  Aligned_cols=265  Identities=30%  Similarity=0.529  Sum_probs=239.1

Q ss_pred             CCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccce
Q 042539            8 QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPK   87 (412)
Q Consensus         8 ~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~   87 (412)
                      .|...-...-.+|+..+.||+|||++||.+++..++..    ||+|+|.|..+. +.....++.+||+|.++|+|||||+
T Consensus         8 ip~~i~D~~~~~Y~~g~~LGkGgFA~cYe~~~~~tge~----~A~KvVpk~~l~-k~~~reKv~~EIeIHr~L~HpnIV~   82 (592)
T KOG0575|consen    8 IPEVIEDPRSKRYKRGRFLGKGGFARCYEARDLDTGEV----VAVKVVPKKLLK-KPKQREKVLNEIEIHRSLKHPNIVQ   82 (592)
T ss_pred             CCCeeecCCcceeeeeeeeccCcceEEEEEEEcCCCcE----EEEEEeehHHhc-CcchHHHHHHHHHHHHhcCCCcEEe
Confidence            33333344447899999999999999999999886655    999999987763 4456778888999999999999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      +|++|++.+++|||+|+|..++|..++..+  +.++|.+|+.++.||+.||.|||+++|||||||..|||++.+-+|||+
T Consensus        83 f~~~FEDs~nVYivLELC~~~sL~el~Krr--k~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIg  160 (592)
T KOG0575|consen   83 FYHFFEDSNNVYIVLELCHRGSLMELLKRR--KPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIG  160 (592)
T ss_pred             eeeEeecCCceEEEEEecCCccHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEec
Confidence            999999999999999999999998887744  459999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||||..+.                                                               .++++..+
T Consensus       161 DFGLAt~le---------------------------------------------------------------~~~Erk~T  177 (592)
T KOG0575|consen  161 DFGLATQLE---------------------------------------------------------------YDGERKKT  177 (592)
T ss_pred             ccceeeeec---------------------------------------------------------------Ccccccce
Confidence            999998763                                                               34567789


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCC
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP  326 (412)
                      +||||.|+|||++...++++.+||||+||++|.||+|+|||...+-.+++.+|......+| ..+.+++|||++||..||
T Consensus       178 lCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P  257 (592)
T KOG0575|consen  178 LCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLRPNP  257 (592)
T ss_pred             ecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999999999999999999999999998877665 468999999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCC
Q 042539          327 VKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~  346 (412)
                      .+||    ++++++.|+||+
T Consensus       258 ~~Rp----sl~~vL~h~Ff~  273 (592)
T KOG0575|consen  258 SERP----SLDEVLDHPFFK  273 (592)
T ss_pred             ccCC----CHHHHhcCHhhh
Confidence            9999    699999999993

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-61  Score=455.94  Aligned_cols=263  Identities=28%  Similarity=0.425  Sum_probs=226.9

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh---HHHHHHHHHHHHHHhhcCCCccceee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK---HEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~---~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      +....+.|.+.+.||+|+||.|-+|..+.++..    ||||++.+......   ......+.+|++||++|+|||||+++
T Consensus       167 pks~~d~yii~~~LGsGafg~Vkla~e~~tgk~----vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~  242 (475)
T KOG0615|consen  167 PKSFNDYYIISKTLGSGAFGLVKLAYEKKTGKQ----VAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIK  242 (475)
T ss_pred             cchhcceeEeeeeecCCceeEEEEEEEcccCcE----EEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEe
Confidence            345678899999999999999999999986655    99999988765321   11234467899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC---CCEEE
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS---GHVTL  166 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~---g~vkL  166 (412)
                      ++|+..+..|+||||+.||+|.+.+-...  .+.+...+.++.|++.||.|||+.||+||||||+|||+..+   ..+||
T Consensus       243 d~f~~~ds~YmVlE~v~GGeLfd~vv~nk--~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKI  320 (475)
T KOG0615|consen  243 DFFEVPDSSYMVLEYVEGGELFDKVVANK--YLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKI  320 (475)
T ss_pred             eeeecCCceEEEEEEecCccHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEe
Confidence            99999999999999999999987766544  48999999999999999999999999999999999999877   67999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+|+...                                                                .+....
T Consensus       321 tDFGlAK~~g----------------------------------------------------------------~~sfm~  336 (475)
T KOG0615|consen  321 TDFGLAKVSG----------------------------------------------------------------EGSFMK  336 (475)
T ss_pred             cccchhhccc----------------------------------------------------------------cceehh
Confidence            9999998652                                                                345567


Q ss_pred             ccccCCCCccceeecCCCC---CchhhHHHHHHHHHHHhhCCCCCCCCCHHH-HHHHHhcCCC-----CCCCCChHHHHH
Q 042539          247 SFVGTEEYVSPEVVRGDGH---EFAVDWWALGILTYEMLYGTTPFRGKNRKE-TFRNVLMKTP-----EFVGQRTALTDL  317 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~---~~~~DiwSlGvil~ell~g~~Pf~~~~~~~-~~~~i~~~~~-----~~~~~~~~~~dl  317 (412)
                      ++||||.|.|||++.+.++   ..++|+|||||+||.+|+|.+||.+..... ..++|..+..     .+..++.++.+|
T Consensus       337 TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dl  416 (475)
T KOG0615|consen  337 TLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDL  416 (475)
T ss_pred             hhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHH
Confidence            9999999999999988764   458899999999999999999999866555 6677776553     344678999999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      |++||..||++|+    +++|+|+||||+.+.
T Consensus       417 I~~mL~VdP~~R~----s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  417 INWMLVVDPENRP----SADEALNHPWFKDAP  444 (475)
T ss_pred             HHHhhEeCcccCc----CHHHHhcChhhhccc
Confidence            9999999999999    699999999999765

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-59  Score=430.28  Aligned_cols=292  Identities=37%  Similarity=0.670  Sum_probs=262.1

Q ss_pred             CCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccce
Q 042539            8 QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPK   87 (412)
Q Consensus         8 ~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~   87 (412)
                      ....+..+++++|..+++||+|.||+|-+|+.++++..    ||||+++|+.+-.+.+ ....+.|-++|+..+||++..
T Consensus       158 ~~~~~~kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~----YAiKIlkKeviiakdE-VAHTlTE~RVL~~~~HPFLt~  232 (516)
T KOG0690|consen  158 EAKRKNKVTMEDFDFLKVLGKGTFGKVILCREKATGKL----YAIKILKKEVIIAKDE-VAHTLTENRVLQNCRHPFLTS  232 (516)
T ss_pred             cccccceeccchhhHHHHhcCCccceEEEEeecccCce----eehhhhhhhheeehHH-hhhhhhHHHHHHhccCcHHHH
Confidence            44556788999999999999999999999999997766    9999999987766544 456677999999999999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      |-..|++++++|+||||++||+|.-.+..  .+.|+|..+++|-++|+.||.|||+.+||+||||.+|+|+|++|++||+
T Consensus       233 LKYsFQt~drlCFVMeyanGGeLf~HLsr--er~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKit  310 (516)
T KOG0690|consen  233 LKYSFQTQDRLCFVMEYANGGELFFHLSR--ERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKIT  310 (516)
T ss_pred             hhhhhccCceEEEEEEEccCceEeeehhh--hhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEee
Confidence            99999999999999999999999655544  4569999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++.-.                                                               ..+....+
T Consensus       311 DFGLCKE~I---------------------------------------------------------------~~g~t~kT  327 (516)
T KOG0690|consen  311 DFGLCKEEI---------------------------------------------------------------KYGDTTKT  327 (516)
T ss_pred             ecccchhcc---------------------------------------------------------------cccceecc
Confidence            999998642                                                               34556679


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCC
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDP  326 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP  326 (412)
                      |||||.|.|||++....|+.++|||.+||++|||++|+.||...+...++.-|+.....++. ++++++.|+..+|.+||
T Consensus       328 FCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr~ls~eAktLLsGLL~kdP  407 (516)
T KOG0690|consen  328 FCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPRTLSPEAKTLLSGLLKKDP  407 (516)
T ss_pred             ccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCccCCHHHHHHHHHHhhcCh
Confidence            99999999999999999999999999999999999999999999999999999998888876 68999999999999999


Q ss_pred             CccCCCC-CChhhhhcCCCCCCCCch-hhcccCCCCCCCCCCCch
Q 042539          327 VKRLGYL-RGACEIKEHVFFKGVRWD-LLTDVLRPPFIPSREEND  369 (412)
Q Consensus       327 ~~R~~~~-~~~~e~l~h~ff~~~~~~-~~~~~~~pp~~p~~~~~~  369 (412)
                      .+|++-. .++.|+..|+||.+++|. ....-..|||.|...++.
T Consensus       408 ~kRLGgGpdDakEi~~h~FF~~v~W~~~~~Kki~PPfKPqVtSet  452 (516)
T KOG0690|consen  408 KKRLGGGPDDAKEIMRHRFFASVDWEATYRKKIEPPFKPQVTSET  452 (516)
T ss_pred             HhhcCCCchhHHHHHhhhhhccCCHHHHHHhccCCCCCCCccccc
Confidence            9999864 359999999999999997 456678999999876654

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-59  Score=434.52  Aligned_cols=257  Identities=26%  Similarity=0.475  Sum_probs=230.4

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+.+++++.++.||+|..|+||+|+++.++..    +|+|+|..   ..+....+++.+|+++++.++|||||++|++|.
T Consensus        75 ~i~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i----~AlK~I~~---~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~  147 (364)
T KOG0581|consen   75 GISLSDLERLGVLGSGNGGTVYKVRHKPTGKI----YALKVILL---NIDPALQKQILRELEILRSCQSPYIVGFYGAFY  147 (364)
T ss_pred             ccCHHHhhhhhhcccCCCcEEEEEEEcCCCeE----EEEEeecc---cCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEE
Confidence            45667999999999999999999999986665    99999933   345677888999999999999999999999999


Q ss_pred             eCCe-EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccc
Q 042539           94 TDEF-LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        94 ~~~~-~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .+.. ++|+||||+||+|+.++...  ++++|.....++.+++.||.|||+ ++||||||||+|||++..|.|||||||.
T Consensus       148 ~~~~~isI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGV  225 (364)
T KOG0581|consen  148 SNGEEISICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGV  225 (364)
T ss_pred             eCCceEEeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccc
Confidence            9984 99999999999999887654  459999999999999999999995 9999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.+.++                                                                 .+++++||
T Consensus       226 S~~lvnS-----------------------------------------------------------------~a~tfvGT  240 (364)
T KOG0581|consen  226 SGILVNS-----------------------------------------------------------------IANTFVGT  240 (364)
T ss_pred             cHHhhhh-----------------------------------------------------------------hccccccc
Confidence            9887432                                                                 45689999


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCC-CCCCC--CChHHHHHHHHhhh
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK-----NRKETFRNVLMKT-PEFVG--QRTALTDLIQRLLE  323 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~-----~~~~~~~~i~~~~-~~~~~--~~~~~~dli~~~L~  323 (412)
                      ..|||||.+.+..|+.++||||||++++|+++|+.||...     +..+++..|+.+. |.++.  +++++++||..||+
T Consensus       241 ~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~  320 (364)
T KOG0581|consen  241 SAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLR  320 (364)
T ss_pred             ccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999874     6678888888854 44443  78999999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      +||.+|+    ++.++++|||+++.
T Consensus       321 Kdp~~R~----s~~qLl~Hpfi~~~  341 (364)
T KOG0581|consen  321 KDPSERP----SAKQLLQHPFIKKF  341 (364)
T ss_pred             CCcccCC----CHHHHhcCHHHhhc
Confidence            9999999    79999999999853

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-56  Score=421.76  Aligned_cols=259  Identities=25%  Similarity=0.491  Sum_probs=226.9

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .-.+++|.+.+.||+|+||+||+++++.++..    ||||.|.+..+.  .+....+..|+.+|+.++|||||+|+++..
T Consensus         6 ~~~~~~y~~~~~iG~GsfavVykg~h~~~~~~----VAIK~i~~~~l~--~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~   79 (429)
T KOG0595|consen    6 MRVVGDYELSREIGSGSFAVVYKGRHKKSGTE----VAIKCIAKKKLN--KKLVELLLSEIKILKELKHPNIVRLLDCIE   79 (429)
T ss_pred             ccccccceehhhccCcceEEEEEeEeccCCce----EEeeeehhhccC--HHHHHHHHHHHHHHHhcCCcceeeEEEEEe
Confidence            34578999999999999999999999886544    999999888763  345667788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC------CCEEEc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS------GHVTLT  167 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~------g~vkL~  167 (412)
                      +++.+|||||||.||||..+++.++  .++|..++.++.||+.||++||+++||||||||+||||+..      -.+||+
T Consensus        80 ~~~~i~lVMEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIA  157 (429)
T KOG0595|consen   80 DDDFIYLVMEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIA  157 (429)
T ss_pred             cCCeEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEec
Confidence            9999999999999999999988765  59999999999999999999999999999999999999875      358999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+|+.+.                                                                .+....+
T Consensus       158 DFGfAR~L~----------------------------------------------------------------~~~~a~t  173 (429)
T KOG0595|consen  158 DFGFARFLQ----------------------------------------------------------------PGSMAET  173 (429)
T ss_pred             ccchhhhCC----------------------------------------------------------------chhHHHH
Confidence            999999763                                                                3445668


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC----CCChHHHHHHHHhhh
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV----GQRTALTDLIQRLLE  323 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~----~~~~~~~dli~~~L~  323 (412)
                      .||+|.|||||++....|+.|+|+||+|+|+|+|++|++||...+..+.+..+..+....+    ..+..+.+|+..+|.
T Consensus       174 lcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~  253 (429)
T KOG0595|consen  174 LCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQ  253 (429)
T ss_pred             hhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHh
Confidence            8999999999999999999999999999999999999999999999999887765543222    235677899999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      .++..|.+    .++...|+|....
T Consensus       254 ~~~~~~~~----~~~~~~~~~l~~~  274 (429)
T KOG0595|consen  254 RNPKDRIS----FEDFFDHPFLAAN  274 (429)
T ss_pred             cCccccCc----hHHhhhhhhcccC
Confidence            99999984    6777888887653

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=3.2e-57  Score=411.29  Aligned_cols=256  Identities=28%  Similarity=0.469  Sum_probs=221.3

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ++.|+.+.++|+|+||+||+|+++.++..    ||||.+..+.  ......+.++|||++|++++|+|+|.|+++|....
T Consensus         1 MekYE~LgkvGEGSYGvV~KCrnk~TgqI----VAIKkF~Ese--dd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkr   74 (396)
T KOG0593|consen    1 MEKYEKLGKVGEGSYGVVMKCRNKDTGQI----VAIKKFVESE--DDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKR   74 (396)
T ss_pred             CcHHhhhhccccCcceEEEEeccCCcccE----EEEEeeccCC--ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcc
Confidence            57899999999999999999999986655    9999996554  34567888999999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+++|+|||+..-|..+-..  ...++++.++.|++|++.|+.|+|+++||||||||+||||+.+|.+||||||+|+.+.
T Consensus        75 klhLVFE~~dhTvL~eLe~~--p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~  152 (396)
T KOG0593|consen   75 KLHLVFEYCDHTVLHELERY--PNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLS  152 (396)
T ss_pred             eeEEEeeecchHHHHHHHhc--cCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhc
Confidence            99999999988777665433  3459999999999999999999999999999999999999999999999999998763


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                               .+...+.++.|.+|+|
T Consensus       153 ~---------------------------------------------------------------pgd~YTDYVATRWYRa  169 (396)
T KOG0593|consen  153 A---------------------------------------------------------------PGDNYTDYVATRWYRA  169 (396)
T ss_pred             C---------------------------------------------------------------CcchhhhhhhhhhccC
Confidence            1                                                               2233446789999999


Q ss_pred             ceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--------------CC----------------
Q 042539          257 PEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--------------TP----------------  305 (412)
Q Consensus       257 PE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--------------~~----------------  305 (412)
                      ||.+.| ..|+.++||||+||++.||++|.+.|+|.++.+++..|...              .+                
T Consensus       170 PELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epL  249 (396)
T KOG0593|consen  170 PELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPL  249 (396)
T ss_pred             hhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccch
Confidence            999998 57999999999999999999999999999988877665421              11                


Q ss_pred             --CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          306 --EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       306 --~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                        .++..+.-+.||+.+||..||.+|+    +.++++.|+||.+
T Consensus       250 e~k~p~~s~~~ld~~k~cL~~dP~~R~----sc~qll~H~yFd~  289 (396)
T KOG0593|consen  250 ERKYPKISNVLLDLLKKCLKMDPDDRL----SCEQLLHHPYFDG  289 (396)
T ss_pred             hhhcccchHHHHHHHHHHhcCCccccc----cHHHHhcChHHHH
Confidence              1234556788999999999999999    5799999999964

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-56  Score=425.77  Aligned_cols=286  Identities=38%  Similarity=0.679  Sum_probs=254.6

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..++.+.|..-++||+||||.||-|+.+.++.-    ||+|.+.|..+..+ ......+.|.+||.+++.++||.|-++|
T Consensus       180 qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKM----YAcKkL~KKRiKkr-~ge~maLnEk~iL~kV~s~FiVslaYAf  254 (591)
T KOG0986|consen  180 QPVTKNTFRVYRVLGKGGFGEVCACQVRATGKM----YACKKLDKKRIKKR-KGETMALNEKQILEKVSSPFIVSLAYAF  254 (591)
T ss_pred             hhccccceeeeEEEecccccceeEEEEecchhh----HHHHHHHHHHHHHh-hhhHHhhHHHHHHHHhccCcEEEEeeee
Confidence            467788999999999999999999999886655    99999988887543 4566778899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ++.+.+|+||..|+||||.-.+++.++..|+++.+++|++||++||++||+.+||+|||||+|||+|+.|+++|+|+|||
T Consensus       255 eTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLA  334 (591)
T KOG0986|consen  255 ETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLA  334 (591)
T ss_pred             cCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceE
Confidence            99999999999999999998899988888999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      ..+                                                                ..+......+||.
T Consensus       335 vei----------------------------------------------------------------~~g~~~~~rvGT~  350 (591)
T KOG0986|consen  335 VEI----------------------------------------------------------------PEGKPIRGRVGTV  350 (591)
T ss_pred             Eec----------------------------------------------------------------CCCCccccccCcc
Confidence            876                                                                3445556669999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC----CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~----~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~  327 (412)
                      +|||||++.+..|+...|||||||+||||+.|+.||...    ..+++.+.++.....++ ..+++++++++.+|++||+
T Consensus       351 GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~~kFS~eakslc~~LL~Kdp~  430 (591)
T KOG0986|consen  351 GYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPE  430 (591)
T ss_pred             cccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcccccCHHHHHHHHHHHccCHH
Confidence            999999999999999999999999999999999999764    34456666666554443 5789999999999999999


Q ss_pred             ccCCCC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          328 KRLGYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       328 ~R~~~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      +|+++. .+++++++||||++++|..+.. ...|||+|.+..
T Consensus       431 ~RLGcrg~ga~evk~HpfFk~lnw~rleagml~PPfiPdp~a  472 (591)
T KOG0986|consen  431 KRLGCRGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPDPGA  472 (591)
T ss_pred             HhccCCCcCcchhhhCcccccCCHhHHhccCCCCCCCCCccc
Confidence            999996 5799999999999999997755 779999987643

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-56  Score=464.55  Aligned_cols=287  Identities=34%  Similarity=0.631  Sum_probs=250.4

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+..+||.|+++||+|+||.|.+|+.+.++..    ||+|++.|-... +...-..|+.|..||..-+.++||+|+.+|
T Consensus        70 lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~V----YAMK~lnK~eMl-Kr~~tA~F~EERDimv~~ns~Wiv~LhyAF  144 (1317)
T KOG0612|consen   70 LRLKAEDFEILKVIGRGAFGEVALVRHKSTEKV----YAMKILNKWEML-KRAETACFREERDIMVFGNSEWIVQLHYAF  144 (1317)
T ss_pred             HhCCHHhhHHHHHhcccccceeEEEEeeccccc----hhHHHhhHHHHh-hchhHHHHHHHhHHHHcCCcHHHHHHHHHh
Confidence            457789999999999999999999999987766    999999875542 233456677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ++++++|+||||++||||-.++....  ++++..|++|+++|+.||..||+.|+|||||||+|||||..||+||+|||.|
T Consensus       145 QD~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsC  222 (1317)
T KOG0612|consen  145 QDERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSC  222 (1317)
T ss_pred             cCccceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhH
Confidence            99999999999999999988887655  6999999999999999999999999999999999999999999999999988


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      -.+..                                                              +...++.+.+|||
T Consensus       223 lkm~~--------------------------------------------------------------dG~V~s~~aVGTP  240 (1317)
T KOG0612|consen  223 LKMDA--------------------------------------------------------------DGTVRSSVAVGTP  240 (1317)
T ss_pred             HhcCC--------------------------------------------------------------CCcEEeccccCCC
Confidence            76531                                                              1223455779999


Q ss_pred             CCccceeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-----CCCCCCCChHHHHHHHHhh
Q 042539          253 EYVSPEVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       253 ~Y~APE~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-----~~~~~~~~~~~~dli~~~L  322 (412)
                      .|++||+++.     ..|+..+||||+||++|||++|..||...+..+++.+|+..     .|....+|.+++|||.++|
T Consensus       241 DYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll  320 (1317)
T KOG0612|consen  241 DYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALL  320 (1317)
T ss_pred             CccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHh
Confidence            9999999963     34789999999999999999999999999999999999864     3444567899999999988


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCchhh
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLT  371 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~~~~  371 (412)
                       .+|+.|++= +++++++.||||.+++|+.+.+ ..|||+|...+++.+
T Consensus       321 -~~~e~RLgr-ngiedik~HpFF~g~~W~~iR~-~~pP~vPevssd~DT  366 (1317)
T KOG0612|consen  321 -CDREVRLGR-NGIEDIKNHPFFEGIDWDNIRE-SVPPVVPEVSSDDDT  366 (1317)
T ss_pred             -cChhhhccc-ccHHHHHhCccccCCChhhhhh-cCCCCCCcCCCCCcc
Confidence             788999962 4699999999999999998877 568999998887654

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-55  Score=429.99  Aligned_cols=261  Identities=31%  Similarity=0.537  Sum_probs=232.9

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh-HHHHHHHHHHHHHHhhcC-CCccceeeee
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRVLSRLS-HPFLPKLLGS   91 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~~~Ei~il~~l~-hpnIv~l~~~   91 (412)
                      ....+.|++.+.||+|+||+|++|++..++.    .||+|++++...... ......+.+|+.+++.+. ||||++++++
T Consensus        13 ~~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~----~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev   88 (370)
T KOG0583|consen   13 QLSIGKYELGRTLGSGSFGKVKLAKHRLTGE----KVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEV   88 (370)
T ss_pred             ccccCceeeeeeecCCCCeeEEEeeeccCCC----eEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEE
Confidence            4678899999999999999999999988664    499998877643212 245666778999999999 9999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEcccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDFD  170 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DFG  170 (412)
                      +.+...+|+|||||.||+|.+++..  .+++.|.+++.++.|++.||+|||++||+||||||+|||++.+ +++||+|||
T Consensus        89 ~~t~~~~~ivmEy~~gGdL~~~i~~--~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG  166 (370)
T KOG0583|consen   89 FATPTKIYIVMEYCSGGDLFDYIVN--KGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFG  166 (370)
T ss_pred             EecCCeEEEEEEecCCccHHHHHHH--cCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccc
Confidence            9999999999999999999988876  4569999999999999999999999999999999999999999 999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      ++....                                                               .......++||
T Consensus       167 ~s~~~~---------------------------------------------------------------~~~~~l~t~cG  183 (370)
T KOG0583|consen  167 LSAISP---------------------------------------------------------------GEDGLLKTFCG  183 (370)
T ss_pred             cccccC---------------------------------------------------------------CCCCcccCCCC
Confidence            997541                                                               12345568899


Q ss_pred             CCCCccceeecCCC-C-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCC--ChHHHHHHHHhhhhCC
Q 042539          251 TEEYVSPEVVRGDG-H-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQ--RTALTDLIQRLLEKDP  326 (412)
Q Consensus       251 t~~Y~APE~l~~~~-~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~--~~~~~dli~~~L~~dP  326 (412)
                      |+.|+|||++.+.. | +.++||||+||+||.|++|+.||...+...++..|..+...++..  +.++++||.+||..||
T Consensus       184 sp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P  263 (370)
T KOG0583|consen  184 SPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLLSPEARSLIEKMLVPDP  263 (370)
T ss_pred             CcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcCCHHHHHHHHHHcCCCc
Confidence            99999999999988 8 599999999999999999999999999999999998887766654  9999999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCCC
Q 042539          327 VKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      .+|+    ++.++++|+||+.
T Consensus       264 ~~R~----t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  264 STRI----TLLEILEHPWFQK  280 (370)
T ss_pred             ccCC----CHHHHhhChhhcc
Confidence            9999    7999999999996

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2.7e-54  Score=420.81  Aligned_cols=281  Identities=32%  Similarity=0.613  Sum_probs=240.0

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ..+....+++|++.+.||+|+||+||+|+++.++.    .||+|++++..... ......+.+|+.+++.++||||++++
T Consensus        10 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~   84 (329)
T PTZ00263         10 PDTSSWKLSDFEMGETLGTGSFGRVRIAKHKGTGE----YYAIKCLKKREILK-MKQVQHVAQEKSILMELSHPFIVNMM   84 (329)
T ss_pred             cccCCCCchheEEEEEEEecCCeEEEEEEECCCCC----EEEEEEEEHHHHhh-hhhHHHHHHHHHHHHhCCCCCCCcEE
Confidence            35677789999999999999999999999987554    49999997765422 23456678899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.+++.+|+|||||.||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+||
T Consensus        85 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Df  162 (329)
T PTZ00263         85 CSFQDENRVYFLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDF  162 (329)
T ss_pred             EEEEcCCEEEEEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeec
Confidence            9999999999999999999998777654  35899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++....                                                                  ...+.+
T Consensus       163 g~~~~~~~------------------------------------------------------------------~~~~~~  176 (329)
T PTZ00263        163 GFAKKVPD------------------------------------------------------------------RTFTLC  176 (329)
T ss_pred             cCceEcCC------------------------------------------------------------------Ccceec
Confidence            99864311                                                                  112457


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCc
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~  328 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+.+..+......++. .+..+++||.+||+.||.+
T Consensus       177 gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~  256 (329)
T PTZ00263        177 GTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNWFDGRARDLVKGLLQTDHTK  256 (329)
T ss_pred             CChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHhhcCHHH
Confidence            999999999999999999999999999999999999999998888888888776655544 6788999999999999999


Q ss_pred             cCCCC-CChhhhhcCCCCCCCCchhhccc-CCCCCCC
Q 042539          329 RLGYL-RGACEIKEHVFFKGVRWDLLTDV-LRPPFIP  363 (412)
Q Consensus       329 R~~~~-~~~~e~l~h~ff~~~~~~~~~~~-~~pp~~p  363 (412)
                      |++.. .++++++.||||++++|+.+... ..+|+.+
T Consensus       257 R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~  293 (329)
T PTZ00263        257 RLGTLKGGVADVKNHPYFHGANWDKLYARYYPAPIPV  293 (329)
T ss_pred             cCCCCCCCHHHHhcCCccCCCCHHHHHhCCCCCCcCC
Confidence            99642 35899999999999999866442 3344443

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-55  Score=412.98  Aligned_cols=286  Identities=32%  Similarity=0.610  Sum_probs=252.4

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~   90 (412)
                      ...+.+.+|.++.+||+|+||+|.++..+.+.    +.||||+++|+.+-+. +.....+.|.++|+... -|++++|+.
T Consensus       343 ~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtd----ELyAiKiLkKDViiQd-DDvectm~EKrvLAL~~kppFL~qlHS  417 (683)
T KOG0696|consen  343 RDRIKATDFNFLMVLGKGSFGKVLLAERKGTD----ELYAIKILKKDVIIQD-DDVECTMVEKRVLALPGKPPFLVQLHS  417 (683)
T ss_pred             ccceeecccceEEEeccCccceeeeecccCcc----hhhhhhhhccceeeec-CcccceehhhhheecCCCCchHHHHHH
Confidence            44778889999999999999999999887755    4599999998876443 34556667999999885 689999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +|++-+.+|+||||++||||-..+.+  -+.|.|.+|.+|+++|+-||-+||++|||+||||.+|+|++..|++||+|||
T Consensus       418 cFQTmDRLyFVMEyvnGGDLMyhiQQ--~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFG  495 (683)
T KOG0696|consen  418 CFQTMDRLYFVMEYVNGGDLMYHIQQ--VGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFG  495 (683)
T ss_pred             HhhhhhheeeEEEEecCchhhhHHHH--hcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecc
Confidence            99999999999999999999544444  4569999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.-.                                                               ..+..+.++||
T Consensus       496 mcKEni---------------------------------------------------------------~~~~TTkTFCG  512 (683)
T KOG0696|consen  496 MCKENI---------------------------------------------------------------FDGVTTKTFCG  512 (683)
T ss_pred             cccccc---------------------------------------------------------------cCCcceeeecC
Confidence            997532                                                               34556779999


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCcc
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R  329 (412)
                      ||.|+|||++..++|+.++||||+||+||||+.|++||.|.+..++++.|......++ ..|.++.+++..+|.+.|.+|
T Consensus       513 TPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kR  592 (683)
T KOG0696|consen  513 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKR  592 (683)
T ss_pred             CCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCcccccHHHHHHHHHHhhcCCccc
Confidence            9999999999999999999999999999999999999999999999999998776665 578999999999999999999


Q ss_pred             CCCCC-ChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          330 LGYLR-GACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       330 ~~~~~-~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      +++.+ +-.++.+||||+.++|+.++. ...|||.|...-
T Consensus       593 LGcg~~ge~di~~H~FFR~iDWek~E~~eiqPPfkPk~k~  632 (683)
T KOG0696|consen  593 LGCGPEGERDIREHPFFRRIDWEKLERREIQPPFKPKIKC  632 (683)
T ss_pred             cCCCCccccchhhCcchhhccHHHHhhccCCCCCCCcccc
Confidence            99854 467899999999999997766 568999998643

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.9e-56  Score=398.01  Aligned_cols=250  Identities=30%  Similarity=0.480  Sum_probs=219.1

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee-e
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG-S   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~-~   91 (412)
                      ....+.+|+++++||+|+||+||+|.+..++..    ||.|.|....+.  ....+.+..|+.+|++|+|||||++|+ .
T Consensus        14 ~~~~l~~y~Il~~IG~GsFg~vykv~~~~~g~l----~a~K~i~f~~md--~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~   87 (375)
T KOG0591|consen   14 PQKTLADYQILKKIGRGSFGEVYKVQCLLDGKL----VALKKIQFGMMD--AKARQDCVKEISLLKQLNHPNIVQYYAHS   87 (375)
T ss_pred             CcccHHHHHHHHHHcCCcchheEEeeeccCcch----hhhhhcchhhcc--HHHHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence            467788999999999999999999999886554    999999866553  445677888999999999999999999 5


Q ss_pred             EEeCC-eEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHH--cC--ceeeeCCCCceEEccCCCE
Q 042539           92 LETDE-FLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHN--MG--IAYRDLKPENILIRQSGHV  164 (412)
Q Consensus        92 ~~~~~-~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~--~~--iiHrDlKp~NiLl~~~g~v  164 (412)
                      |..+. -++||||||.+|||..++..  .....++|..++.++.|+|.||..+|+  .+  |+||||||.||+++.+|.|
T Consensus        88 f~~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvv  167 (375)
T KOG0591|consen   88 FIEDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVV  167 (375)
T ss_pred             hhccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCce
Confidence            55554 49999999999999988654  345679999999999999999999999  45  9999999999999999999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+||||++.+.+..                                                               ..
T Consensus       168 KLGDfGL~r~l~s~~---------------------------------------------------------------tf  184 (375)
T KOG0591|consen  168 KLGDFGLGRFLSSKT---------------------------------------------------------------TF  184 (375)
T ss_pred             eeccchhHhHhcchh---------------------------------------------------------------HH
Confidence            999999999875332                                                               23


Q ss_pred             CcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-CC--CCChHHHHHHHHh
Q 042539          245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-FV--GQRTALTDLIQRL  321 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-~~--~~~~~~~dli~~~  321 (412)
                      +.+++|||.||+||.+.+.+|+++||||||||++|||+.-++||.|.+..++.++|..+... .+  -.|.++..+|+.|
T Consensus       185 A~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~c  264 (375)
T KOG0591|consen  185 AHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEHYSTDLRELINMC  264 (375)
T ss_pred             HHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999877543 44  2578999999999


Q ss_pred             hhhCCCccCC
Q 042539          322 LEKDPVKRLG  331 (412)
Q Consensus       322 L~~dP~~R~~  331 (412)
                      +..||+.||+
T Consensus       265 i~vd~~~RP~  274 (375)
T KOG0591|consen  265 IAVDPEQRPD  274 (375)
T ss_pred             ccCCcccCCC
Confidence            9999999996

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-54  Score=428.80  Aligned_cols=270  Identities=26%  Similarity=0.432  Sum_probs=237.0

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      +++-|++.+.||+|+-|.|-+|++..||+    .+|||+|.+..- ..+.....+.+||-||+.+.||||++||++|+++
T Consensus        10 tiGpwkLgkTLG~Gstg~vrlakh~~TGq----laaiKii~k~~~-~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~   84 (786)
T KOG0588|consen   10 TIGPWKLGKTLGKGSTGCVRLAKHAETGQ----LAAIKIIPKRSE-LSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENK   84 (786)
T ss_pred             cccceeccccccCCCCceehhhhcccccc----eeEEEeeccccc-cccccccchhhhhHHHHHhcCCCeeeeeeeeccC
Confidence            45679999999999999999998877554    599999987631 2234456778899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      .++|+|+||+.||.|.+++..++  .+++.+++.+++||+.|+.|||..+|+||||||+|+|+|.++++||+|||+|..-
T Consensus        85 ~~lylvlEyv~gGELFdylv~kG--~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe  162 (786)
T KOG0588|consen   85 QHLYLVLEYVPGGELFDYLVRKG--PLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLE  162 (786)
T ss_pred             ceEEEEEEecCCchhHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecc
Confidence            99999999999999988877654  5999999999999999999999999999999999999999999999999999643


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                                                                                      ..+....+.||+|+|.
T Consensus       163 ----------------------------------------------------------------~~gklLeTSCGSPHYA  178 (786)
T KOG0588|consen  163 ----------------------------------------------------------------VPGKLLETSCGSPHYA  178 (786)
T ss_pred             ----------------------------------------------------------------cCCccccccCCCcccC
Confidence                                                                            2344556789999999


Q ss_pred             cceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC
Q 042539          256 SPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       256 APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |||++.|.+| +.++||||.|||||.||+|+.||++.+...++.++..+....+ .++.++.|||++||..||++|+   
T Consensus       179 ~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~Ri---  255 (786)
T KOG0588|consen  179 APEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRI---  255 (786)
T ss_pred             CchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCccccc---
Confidence            9999999999 7999999999999999999999999999999999988876665 4689999999999999999999   


Q ss_pred             CChhhhhcCCCCCCCCchhhcccCCCC
Q 042539          334 RGACEIKEHVFFKGVRWDLLTDVLRPP  360 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~~~~~~~~~~~pp  360 (412)
                       |.+|+++|||+.+..-.......++|
T Consensus       256 -T~~eI~kHP~l~g~~~~~~~~~~~~~  281 (786)
T KOG0588|consen  256 -TTEEILKHPFLSGYTSLPSSKSLRPP  281 (786)
T ss_pred             -cHHHHhhCchhhcCCCCChhhhcCCC
Confidence             78999999999987654444334433

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=3.5e-53  Score=411.82  Aligned_cols=274  Identities=38%  Similarity=0.681  Sum_probs=231.2

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||+||+|+++.++.    .||||++++..... ......+.+|+.+++.++||||+++++++..++.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e   75 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGK----YYAMKILKKEVIIA-KDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEHHHhhh-hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEe
Confidence            479999999999999877554    49999998765432 2334566789999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....      
T Consensus        76 ~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~------  147 (323)
T cd05571          76 YANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS------  147 (323)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCccccc------
Confidence            99999998776543  4589999999999999999999999999999999999999999999999999864310      


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                               ........+||+.|+|||++.+.
T Consensus       148 ---------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~  170 (323)
T cd05571         148 ---------------------------------------------------------DGATMKTFCGTPEYLAPEVLEDN  170 (323)
T ss_pred             ---------------------------------------------------------CCCcccceecCccccChhhhcCC
Confidence                                                                     11122356899999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCC-Chhhhhc
Q 042539          264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLR-GACEIKE  341 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~-~~~e~l~  341 (412)
                      .++.++|||||||++|||++|..||.+.+....+..+......++ ..++++.+||.+||+.||++|++... ++.++++
T Consensus       171 ~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         171 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             CCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            999999999999999999999999999888888887776665544 46789999999999999999996432 6999999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      |+||.+++|..+.. ...||+.|....
T Consensus       251 h~~f~~~~~~~~~~~~~~~~~~~~~~~  277 (323)
T cd05571         251 HRFFASINWQDVVQKKLEPPFKPQVTS  277 (323)
T ss_pred             CCCcCCCCHHHHHhCCCCCCcCCCCCC
Confidence            99999999986654 445666655433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=8.8e-55  Score=422.58  Aligned_cols=256  Identities=29%  Similarity=0.502  Sum_probs=229.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|.+.+.||+|+||+||+++.+.+..    .||||.+.|..-  .+...+.+.+|++|++.++|||||.++++|++..
T Consensus         1 me~yhv~e~iG~Gsfg~VYKgrrK~t~~----~vAik~i~K~gr--~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~   74 (808)
T KOG0597|consen    1 MEQYHVYEMIGEGSFGRVYKGRRKYTIQ----VVAIKFIDKSGR--NEKELKNLRQEVRILRSLKHPNIVEMLESFETSA   74 (808)
T ss_pred             CcchhHHHHhcCCccceeeeccccccee----EEEEEEehhcCC--chHHHHHHHHHHHHHHhcCCcchhhHHHhhcccc
Confidence            5789999999999999999988776554    499999988753  3445778889999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ++|+|+|||.| +|..++...  +.++|++++.++.+++.||.|||+++|+|||+||+|||+..+|++|+||||+|+-+.
T Consensus        75 ~~~vVte~a~g-~L~~il~~d--~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~  151 (808)
T KOG0597|consen   75 HLWVVTEYAVG-DLFTILEQD--GKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMS  151 (808)
T ss_pred             eEEEEehhhhh-hHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcc
Confidence            99999999988 898777654  459999999999999999999999999999999999999999999999999998663


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                                                                                     .+....+++.|||.|||
T Consensus       152 ---------------------------------------------------------------~~t~vltsikGtPlYmA  168 (808)
T KOG0597|consen  152 ---------------------------------------------------------------TNTSVLTSIKGTPLYMA  168 (808)
T ss_pred             ---------------------------------------------------------------cCceeeeeccCcccccC
Confidence                                                                           23344567789999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      ||++.+.+|+..+|+||||||+|||++|++||-..+..+..+.|......++. .+..+++|++.+|++||.+|++    
T Consensus       169 PElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~Rlt----  244 (808)
T KOG0597|consen  169 PELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLT----  244 (808)
T ss_pred             HHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHhhcChhhccc----
Confidence            99999999999999999999999999999999999989999999887766654 5789999999999999999995    


Q ss_pred             hhhhhcCCCCCCC
Q 042539          336 ACEIKEHVFFKGV  348 (412)
Q Consensus       336 ~~e~l~h~ff~~~  348 (412)
                      -.+++.|||.++.
T Consensus       245 W~~Ll~HpF~k~~  257 (808)
T KOG0597|consen  245 WTDLLGHPFWKGK  257 (808)
T ss_pred             HHHHhcChHHhhh
Confidence            5899999998763

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.2e-52  Score=409.43  Aligned_cols=318  Identities=42%  Similarity=0.729  Sum_probs=246.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~   97 (412)
                      +|++++.||+|+||+||+|++.. +..+++.||+|++.+............+.+|+.+++.+. |+||+++++++..++.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~-~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~   79 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVT-GHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAK   79 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcc-cCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCE
Confidence            68999999999999999998743 223566799999987655444445667788999999995 8999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus        80 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~  157 (332)
T cd05614          80 LHLILDYVSGGEMFTHLYQRD--NFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLS  157 (332)
T ss_pred             EEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccc
Confidence            999999999999988776543  499999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                              .......++||+.|+||
T Consensus       158 ~--------------------------------------------------------------~~~~~~~~~gt~~y~aP  175 (332)
T cd05614         158 E--------------------------------------------------------------EKERTYSFCGTIEYMAP  175 (332)
T ss_pred             c--------------------------------------------------------------CCCccccccCCccccCH
Confidence            0                                                              11122356799999999


Q ss_pred             eeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCC----CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCC
Q 042539          258 EVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       258 E~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~----~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |++.+. .++.++|||||||++|||++|..||...    ........+....+.++ ..++.+.+||.+||+.||++|++
T Consensus       176 E~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~  255 (332)
T cd05614         176 EIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLG  255 (332)
T ss_pred             HHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCC
Confidence            999875 4788999999999999999999999653    23344445555444443 46789999999999999999996


Q ss_pred             CC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCchhhhhhhcCCCCChhhhhhccCCCCCCCCCCCCCCCCCCCc
Q 042539          332 YL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPSHRSF  409 (412)
Q Consensus       332 ~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  409 (412)
                      .. .+++++++||||++.+|..... ...+++.|......           +...+.+......|...|++.|++..+.|
T Consensus       256 ~~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (332)
T cd05614         256 AGPQGASEIKEHPFFKGLDWEALALRKVNPPFRPSIRNEL-----------DVGNFAEEFTNLEPVYSPAGTPPSGARVF  324 (332)
T ss_pred             CCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCcc-----------hhhhcCcccccCCcccCCCCCCccccccc
Confidence            42 2588999999999999976544 34566766644332           22223333333334444555555566666


Q ss_pred             cCC
Q 042539          410 AEY  412 (412)
Q Consensus       410 ~~~  412 (412)
                      .+|
T Consensus       325 ~~~  327 (332)
T cd05614         325 QGY  327 (332)
T ss_pred             CCc
Confidence            665

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-54  Score=381.47  Aligned_cols=266  Identities=31%  Similarity=0.538  Sum_probs=242.5

Q ss_pred             CCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccce
Q 042539            8 QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPK   87 (412)
Q Consensus         8 ~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~   87 (412)
                      +...+....+++|++.+.||+|.||.||+|+.+.++-.    ||+||+-|+.+. .....+.+.||++|-..|+||||++
T Consensus        12 ~~~~~~~~~l~dfeigr~LgkgkFG~vYlarekks~~I----valKVlfKsqi~-~~~v~~qlrREiEIqs~L~hpnilr   86 (281)
T KOG0580|consen   12 GSRATKTWTLDDFEIGRPLGKGKFGNVYLAREKKSLFI----VALKVLFKSQIL-KTQVEHQLRREIEIQSHLRHPNILR   86 (281)
T ss_pred             ccccccccchhhccccccccCCccccEeEeeeccCCcE----EEEeeeeHHHHH-HhcchhhhhheeEeecccCCccHHh
Confidence            34556789999999999999999999999999886665    999999998863 4567788999999999999999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      +|++|.+...+||++||..+|+|...+.......|++..+..|+.|++.||.|+|.+++|||||||+|+|++..|.+||+
T Consensus        87 lY~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiA  166 (281)
T KOG0580|consen   87 LYGYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIA  166 (281)
T ss_pred             hhhheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeecc
Confidence            99999999999999999999999888886677789999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||.+...                                                                 ...+..+
T Consensus       167 dfGwsV~~-----------------------------------------------------------------p~~kR~t  181 (281)
T KOG0580|consen  167 DFGWSVHA-----------------------------------------------------------------PSNKRKT  181 (281)
T ss_pred             CCCceeec-----------------------------------------------------------------CCCCcee
Confidence            99988542                                                                 2345668


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCC
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP  326 (412)
                      .|||..|.+||...+..++..+|+|++|++.||++.|.+||...+..+++++|......++ .++.+++|||.+||.++|
T Consensus       182 lcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~is~~a~dlI~~ll~~~p  261 (281)
T KOG0580|consen  182 LCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTISGGAADLISRLLVKNP  261 (281)
T ss_pred             eecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCcccChhHHHHHHHHhccCc
Confidence            9999999999999999999999999999999999999999999999999999987766555 468999999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCCC
Q 042539          327 VKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      .+|+    ...|++.|||+..
T Consensus       262 ~~r~----~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  262 IERL----ALTEVMDHPWIVA  278 (281)
T ss_pred             cccc----cHHHHhhhHHHHh
Confidence            9999    6899999999864

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-52  Score=412.85  Aligned_cols=313  Identities=35%  Similarity=0.619  Sum_probs=236.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||||++++..... ......+.+|+.+++.++|+||++++++|.+++.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~~-~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~   75 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGH----IYAMKKLRKSEMLE-KEQVAHVRAERDILAEADNPWVVKLYYSFQDENY   75 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCe
Confidence            589999999999999999999987554    49999997765422 2345667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++.+..
T Consensus        76 ~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  153 (364)
T cd05599          76 LYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKK  153 (364)
T ss_pred             EEEEECCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceeccc
Confidence            99999999999998887654  3599999999999999999999999999999999999999999999999999976532


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc--CCCCCCcccccCCCCc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF--DNGERSNSFVGTEEYV  255 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gt~~Y~  255 (412)
                      .........   .....+.                    ..   ......... ......+.  .......+.+||+.|+
T Consensus       154 ~~~~~~~~~---~~~~~~~--------------------~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gt~~y~  206 (364)
T cd05599         154 SHRTEFYRI---LSHALPS--------------------NF---LDFISKPMS-SKRKAETWKRNRRALAYSTVGTPDYI  206 (364)
T ss_pred             ccccccccc---ccccccc--------------------cc---ccccccccc-ccccccchhhcccccccccccCcccc
Confidence            110000000   0000000                    00   000000000 00000000  0011223568999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-----CCCCCChHHHHHHHHhhhhCCCccC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-----EFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-----~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |||++.+..++.++|||||||++|||++|.+||.+.+..+.+..++....     .....++++++||.+||. +|.+|+
T Consensus       207 aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~  285 (364)
T cd05599         207 APEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRL  285 (364)
T ss_pred             CHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcC
Confidence            99999999999999999999999999999999999988888777765332     222457899999999996 999999


Q ss_pred             CCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREE  367 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~  367 (412)
                      +. ++++++++||||++++|+.+.. ..++++|....
T Consensus       286 ~~-~~~~~ll~h~~~~~~~~~~~~~-~~~~~~~~~~~  320 (364)
T cd05599         286 GN-NGVNEIKSHPFFKGVDWEHIRE-RPAPIIPELKS  320 (364)
T ss_pred             CC-CCHHHHhcCCCcCCCCHHHHhh-cCCCCCCCCCC
Confidence            54 4699999999999999987654 34566665443

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.5e-52  Score=410.27  Aligned_cols=288  Identities=30%  Similarity=0.588  Sum_probs=245.1

Q ss_pred             CCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccce
Q 042539            8 QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPK   87 (412)
Q Consensus         8 ~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~   87 (412)
                      .+.....+..++|++++.||+|+||.||+|.++..+   ...||+|++.+..... ......+.+|+.+++.++||||++
T Consensus        20 ~~~~~~~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~---~~~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~Iv~   95 (340)
T PTZ00426         20 EPKRKNKMKYEDFNFIRTLGTGSFGRVILATYKNED---FPPVAIKRFEKSKIIK-QKQVDHVFSERKILNYINHPFCVN   95 (340)
T ss_pred             ccccCCCCChhhcEEEEEEeecCCeEEEEEEEECCC---CeEEEEEEEEHHHhhh-hhhHHHHHHHHHHHHhCCCCCCcc
Confidence            456678899999999999999999999999876543   2359999997765422 234556778999999999999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      +++++.+++.+|+|||||.||+|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+
T Consensus        96 ~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~  173 (340)
T PTZ00426         96 LYGSFKDESYLYLVLEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMT  173 (340)
T ss_pred             eEEEEEeCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEe
Confidence            9999999999999999999999988876543  59999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++.+..                                                                  ...+
T Consensus       174 DFG~a~~~~~------------------------------------------------------------------~~~~  187 (340)
T PTZ00426        174 DFGFAKVVDT------------------------------------------------------------------RTYT  187 (340)
T ss_pred             cCCCCeecCC------------------------------------------------------------------Ccce
Confidence            9999864310                                                                  1124


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCC
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP  326 (412)
                      .+||+.|+|||++.+..++.++|||||||++|||++|.+||.+.+....+..+......++ ..++.+.++|++||+.||
T Consensus       188 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~dp  267 (340)
T PTZ00426        188 LCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKFLDNNCKHLMKKLLSHDL  267 (340)
T ss_pred             ecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCH
Confidence            5799999999999998899999999999999999999999999988888888877655443 457899999999999999


Q ss_pred             CccCCC-CCChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCC
Q 042539          327 VKRLGY-LRGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREE  367 (412)
Q Consensus       327 ~~R~~~-~~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~  367 (412)
                      ++|++. ..+++++++||||++++|.... ....+|+.|....
T Consensus       268 ~~R~~~~~~~~~~~~~hp~f~~~~~~~~~~~~~~~~~~p~~~~  310 (340)
T PTZ00426        268 TKRYGNLKKGAQNVKEHPWFGNIDWVSLLHKNVEVPYKPKYKN  310 (340)
T ss_pred             HHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCC
Confidence            999853 2479999999999999997543 3456778877544

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-52  Score=415.74  Aligned_cols=320  Identities=33%  Similarity=0.596  Sum_probs=235.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|.+++.||+|+||+||+|+++.++.    .||||++.+..... ......+.+|+++++.++||||++++++|.+++.
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~   75 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGK----IYAMKTLLKSEMFK-KDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQY   75 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCC----EEEEEEEEHHHHHH-hHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCe
Confidence            589999999999999999999887554    49999997654422 3345677889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++..++.++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++.+..
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~  153 (377)
T cd05629          76 LYLIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHK  153 (377)
T ss_pred             eEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccccccc
Confidence            99999999999998877643  4599999999999999999999999999999999999999999999999999975432


Q ss_pred             hhhh--hhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc--CCCCCCcccccCCC
Q 042539          178 KTAF--EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF--DNGERSNSFVGTEE  253 (412)
Q Consensus       178 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gt~~  253 (412)
                      ....  ..+...... ...+.                   ....+...................  .......+.+||+.
T Consensus       154 ~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  213 (377)
T cd05629         154 QHDSAYYQKLLQGKS-NKNRI-------------------DNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPD  213 (377)
T ss_pred             ccccccccccccccc-ccccc-------------------ccccccccccccccccchhhhhhhhhcccccccccCCCcc
Confidence            1100  000000000 00000                   000000000000000000000000  00111235689999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCC---CCCChHHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEF---VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~---~~~~~~~~dli~~~L~~dP~~  328 (412)
                      |+|||++.+..++.++|||||||++|||++|.+||.+.+..+.+..+....  ..+   ...+.++++||.+||. +|.+
T Consensus       214 y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~  292 (377)
T cd05629         214 YIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAEN  292 (377)
T ss_pred             ccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhh
Confidence            999999999999999999999999999999999999988888777776422  222   2467899999999997 8888


Q ss_pred             cCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREE  367 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~  367 (412)
                      |++- .++.+++.||||++++|+.+.. ..+|++|....
T Consensus       293 r~~r-~~~~~~l~hp~~~~~~~~~~~~-~~~~~~~~~~~  329 (377)
T cd05629         293 RLGR-GGAHEIKSHPFFRGVDWDTIRQ-IRAPFIPQLKS  329 (377)
T ss_pred             cCCC-CCHHHHhcCCCcCCCCHHHHcc-CCCCcccCCCC
Confidence            7642 3799999999999999988854 45677776543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-54  Score=414.95  Aligned_cols=287  Identities=35%  Similarity=0.656  Sum_probs=257.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..++.+.+++++..||-||||.|=+++.+....    .+|+|+++|.++... ....++..|.+||..++.|+||+||.+
T Consensus       414 ~a~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~----~fAlKilkK~hIVdt-kQqeHv~sEr~Im~~~~s~fIvrLYrT  488 (732)
T KOG0614|consen  414 FAQVKLSDLKRIATLGVGGFGRVELVKVNSQKA----TFALKILKKKHIVDT-KQQEHVFSERNIMMECRSDFIVRLYRT  488 (732)
T ss_pred             hcccchhhhhhhhhcccCccceEEEEEecccch----HHHHHHHhHhhccch-hHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            457889999999999999999999998776443    399999999887443 446677889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      |.++..+|++||-|-||+|+..+..++  .|++..+++|++.++.|++|||++|||+|||||+|+|++.+|-+||.|||+
T Consensus       489 frd~kyvYmLmEaClGGElWTiLrdRg--~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGF  566 (732)
T KOG0614|consen  489 FRDSKYVYMLMEACLGGELWTILRDRG--SFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGF  566 (732)
T ss_pred             hccchhhhhhHHhhcCchhhhhhhhcC--CcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhh
Confidence            999999999999999999998887654  599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.+                                                                ..+..+.+||||
T Consensus       567 AKki----------------------------------------------------------------~~g~KTwTFcGT  582 (732)
T KOG0614|consen  567 AKKI----------------------------------------------------------------GSGRKTWTFCGT  582 (732)
T ss_pred             HHHh----------------------------------------------------------------ccCCceeeecCC
Confidence            9977                                                                345677899999


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCCC-CCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEFV-GQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~~-~~~~~~~dli~~~L~~dP~~  328 (412)
                      |.|.|||++.+.+++.++|.||||+++|||++|.+||.+.+...++..|+.+.  ..+| .+++.+.+||.++...+|.+
T Consensus       583 pEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~E  662 (732)
T KOG0614|consen  583 PEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTE  662 (732)
T ss_pred             cccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHh
Confidence            99999999999999999999999999999999999999999999999998764  3344 35688999999999999999


Q ss_pred             cCCCC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCch
Q 042539          329 RLGYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEND  369 (412)
Q Consensus       329 R~~~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~~  369 (412)
                      |+++. .++.+|++|.||.+.+|+-+.. ...||++|+.....
T Consensus       663 RLG~~~~gI~DIkkH~Wf~gfdweglr~~~L~pPi~~~va~pt  705 (732)
T KOG0614|consen  663 RLGYQKGGINDIKKHRWFEGFDWEGLRSRTLPPPIIPSVANPT  705 (732)
T ss_pred             hhccccCChHHHHhhhhhhcCChhhhhhccCCCCccccCCCcc
Confidence            99973 5799999999999999997755 67999999977664

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=4.5e-52  Score=404.13  Aligned_cols=277  Identities=32%  Similarity=0.665  Sum_probs=231.2

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHH---hhcCCCccceeeeeEEeCC
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL---SRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il---~~l~hpnIv~l~~~~~~~~   96 (412)
                      |++++.||+|+||.||+|+++.++..    ||||++++...... .....+.+|++++   +.++||||+++++++.+++
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~----~aiK~~~~~~~~~~-~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~   75 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGEL----YAIKALKKGDIIAR-DEVESLMCEKRIFETANSERHPFLVNLFACFQTED   75 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCE----EEEEEEEHHHhhhh-hHHHHHHHHHHHHHhccccCCCChhceeeEEEcCC
Confidence            78999999999999999998875544    99999987653222 2344566676665   4567999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+|||||.||+|..++..   ..+++.++..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++...
T Consensus        76 ~~~lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05589          76 HVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGM  152 (324)
T ss_pred             EEEEEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCC
Confidence            99999999999999766543   359999999999999999999999999999999999999999999999999986431


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                               ......+.+||+.|+|
T Consensus       153 ~---------------------------------------------------------------~~~~~~~~~g~~~y~a  169 (324)
T cd05589         153 G---------------------------------------------------------------FGDRTSTFCGTPEFLA  169 (324)
T ss_pred             C---------------------------------------------------------------CCCcccccccCccccC
Confidence            0                                                               1112235689999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-C
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-R  334 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~  334 (412)
                      ||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+....+.++ ..++.+.+||.+||+.||.+|++.. .
T Consensus       170 PE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  249 (324)
T cd05589         170 PEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSREAISIMRRLLRRNPERRLGSGEK  249 (324)
T ss_pred             HhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCC
Confidence            9999999899999999999999999999999999988888888877655544 4678999999999999999999753 3


Q ss_pred             ChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCC
Q 042539          335 GACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREE  367 (412)
Q Consensus       335 ~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~  367 (412)
                      ++.++++|+||++++|.... ....||+.|....
T Consensus       250 ~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  283 (324)
T cd05589         250 DAEDVKKQPFFRDINWDDLLARKIKPPFVPTIKG  283 (324)
T ss_pred             CHHHHhhCCCcCCCCHHHHHhCCCCcCccCCCCC
Confidence            69999999999999998543 3456777766443

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=5.7e-52  Score=409.76  Aligned_cols=301  Identities=32%  Similarity=0.545  Sum_probs=229.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||||++.+..... ......+.+|+.++..++|+||+++++.++++..
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~   75 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGH----VYAMKILRKADMLE-KEQVGHIRAERDILVEADSLWVVKMFYSFQDKLN   75 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCC----EEEEEEEEHHHHHH-hhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCe
Confidence            589999999999999999999877544    49999997765422 3345667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++.+++.++.|++.||+|||++||+||||||+|||++.+|++||+|||+++.+..
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~  153 (363)
T cd05628          76 LYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKK  153 (363)
T ss_pred             EEEEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCcccccc
Confidence            99999999999998887654  3599999999999999999999999999999999999999999999999999986532


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ............                       ..+....-.... +.....    ...........+.+||+.|+||
T Consensus       154 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~Gt~~Y~aP  205 (363)
T cd05628         154 AHRTEFYRNLNH-----------------------SLPSDFTFQNMN-SKRKAE----TWKRNRRQLAFSTVGTPDYIAP  205 (363)
T ss_pred             cccccccccccc-----------------------cccccccccccc-cccccc----hhhhccccccccccCCccccCH
Confidence            111000000000                       000000000000 000000    0000011223467899999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |++.+..++.++|||||||++|||++|+.||.+.+..+.+.++....     +.....++++++||.+|+. +|.+|++-
T Consensus       206 E~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~~~~r~~r  284 (363)
T cd05628         206 EVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCC-EWEHRIGA  284 (363)
T ss_pred             HHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcC-ChhhcCCC
Confidence            99999999999999999999999999999999998888888887532     2223467899999999885 67766531


Q ss_pred             CCChhhhhcCCCCCCCCchhhcc
Q 042539          333 LRGACEIKEHVFFKGVRWDLLTD  355 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~~~~~~~~  355 (412)
                       ++++++++||||++++|+.+..
T Consensus       285 -~~~~ei~~hp~f~~~~~~~~~~  306 (363)
T cd05628         285 -PGVEEIKTNPFFEGVDWEHIRE  306 (363)
T ss_pred             -CCHHHHhCCCCCCCCCHHHHHh
Confidence             3799999999999999998755

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-52  Score=399.81  Aligned_cols=274  Identities=42%  Similarity=0.737  Sum_probs=234.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||+|++.+..... ......+.+|+.+++.++||||+++++++.+++.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   75 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEH----YYALKVMAIPEVIR-LKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRF   75 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCC----EEEEEEEEHHHHhh-hHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCe
Confidence            589999999999999999999887554    49999997654322 2334567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~  153 (291)
T cd05612          76 LYMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD  153 (291)
T ss_pred             EEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccC
Confidence            99999999999998877654  3589999999999999999999999999999999999999999999999999865411


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                        .....+||+.|+||
T Consensus       154 ------------------------------------------------------------------~~~~~~gt~~y~aP  167 (291)
T cd05612         154 ------------------------------------------------------------------RTWTLCGTPEYLAP  167 (291)
T ss_pred             ------------------------------------------------------------------CcccccCChhhcCH
Confidence                                                                              11235799999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCC-CC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYL-RG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~-~~  335 (412)
                      |++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+......++. .+..+++||.+||+.||.+|++.. .+
T Consensus       168 E~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~  247 (291)
T cd05612         168 EVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNG  247 (291)
T ss_pred             HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcCCCHHHccCCccCC
Confidence            9999999999999999999999999999999999888888888877665543 578999999999999999999643 36


Q ss_pred             hhhhhcCCCCCCCCchhhcc-cCCCCCCCC
Q 042539          336 ACEIKEHVFFKGVRWDLLTD-VLRPPFIPS  364 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~  364 (412)
                      +++++.|+||+.++|..... ...|++.|.
T Consensus       248 ~~~~l~h~~~~~~~~~~~~~~~~~~~~~p~  277 (291)
T cd05612         248 ADDVKNHRWFKSVDWDDVPQRKLKPPIVPK  277 (291)
T ss_pred             HHHHhcCccccCCCHHHHhcCCCCCCEeCC
Confidence            99999999999999985544 234444444

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-53  Score=408.80  Aligned_cols=260  Identities=29%  Similarity=0.465  Sum_probs=222.9

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~   91 (412)
                      .-+.+++|.++++||.|+||.||+|+.+.++..    ||||.+++.... -++.  .-+||++.|++|+ |||||+|.++
T Consensus         5 ~~~~m~RY~~i~klGDGTfGsV~la~~~~~~~~----VAIK~MK~Kf~s-~ee~--~nLREvksL~kln~hpniikL~Ev   77 (538)
T KOG0661|consen    5 QVIFMDRYTVIRKLGDGTFGSVYLAKSKETGEL----VAIKKMKKKFYS-WEEC--MNLREVKSLRKLNPHPNIIKLKEV   77 (538)
T ss_pred             ehhHHHHHHHHHHhcCCcceeEEEeeecCCCce----eeHHHHHhhhcc-HHHH--HHHHHHHHHHhcCCCCcchhhHHH
Confidence            345679999999999999999999998886665    999999776543 2222  2346999999999 9999999999


Q ss_pred             EEeCC-eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           92 LETDE-FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        92 ~~~~~-~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +.+++ .+|+|||||+ ..|+.++..+ +..|++..++.|+.||+.||+|+|.+|+.|||+||||||+..+..+||+|||
T Consensus        78 i~d~~~~L~fVfE~Md-~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFG  155 (538)
T KOG0661|consen   78 IRDNDRILYFVFEFMD-CNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFG  155 (538)
T ss_pred             hhccCceEeeeHHhhh-hhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccc
Confidence            99888 9999999995 5787787776 6789999999999999999999999999999999999999989999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +||.+.+..                                                                ..+.++.
T Consensus       156 LARev~Skp----------------------------------------------------------------PYTeYVS  171 (538)
T KOG0661|consen  156 LAREVRSKP----------------------------------------------------------------PYTEYVS  171 (538)
T ss_pred             cccccccCC----------------------------------------------------------------Ccchhhh
Confidence            999874332                                                                2345688


Q ss_pred             CCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCCC---------------------
Q 042539          251 TEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KTPE---------------------  306 (412)
Q Consensus       251 t~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~~~---------------------  306 (412)
                      |++|+|||++... -|+.++||||+|||++|+++-++.|+|.++.+++.+|+.  +.|.                     
T Consensus       172 TRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~  251 (538)
T KOG0661|consen  172 TRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQV  251 (538)
T ss_pred             cccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcC
Confidence            9999999998765 479999999999999999999999999999888877762  2111                     


Q ss_pred             --------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          307 --------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       307 --------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                              ++..+.++.+||.+||.+||.+||    ||.++++||||+...
T Consensus       252 ~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRp----TA~~al~~pffq~~~  298 (538)
T KOG0661|consen  252 KPSPLKDLLPNASSEAASLIERLLAWDPDKRP----TASQALQHPFFQVGR  298 (538)
T ss_pred             CCCChHHhCcccCHHHHHHHHHHhcCCCccCc----cHHHHhcCccccccc
Confidence                    124568899999999999999999    799999999998543

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.8e-53  Score=399.35  Aligned_cols=254  Identities=28%  Similarity=0.482  Sum_probs=232.7

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      -+|++.+.||+|+||+|-+|.++..+.    .||||.|+|+.+... ....+++|||+||..|+||||+++|++|++.+.
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR----~VAiKsIrKdkIkde-qDlvhIRREIeIMSsLNHPhII~IyEVFENkdK  127 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGR----EVAIKSIRKDKIKDE-QDLVHIRREIEIMSSLNHPHIIQIYEVFENKDK  127 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCc----EeehhhhhhhhcccH-HHHHHHHHHHHHHhhcCCCceeehhhhhcCCce
Confidence            489999999999999999988876554    499999999988654 456788999999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +.|||||..||+|++++...+  .++|.+++.+++||+.|+.|+|.++++|||||.+|||+|.++++||+||||+..+  
T Consensus       128 IvivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly--  203 (668)
T KOG0611|consen  128 IVIVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLY--  203 (668)
T ss_pred             EEEEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhh--
Confidence            999999999999998887655  4999999999999999999999999999999999999999999999999999765  


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                    .++....+|||+|-|.+|
T Consensus       204 --------------------------------------------------------------~~~kfLqTFCGSPLYASP  221 (668)
T KOG0611|consen  204 --------------------------------------------------------------ADKKFLQTFCGSPLYASP  221 (668)
T ss_pred             --------------------------------------------------------------ccccHHHHhcCCcccCCc
Confidence                                                                          234455689999999999


Q ss_pred             eeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          258 EVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       258 E~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      |++.|.+| +..+|.|||||+||-|++|.+||.|.+...+.++|-.+.+.-+..+.++.-||+.||..||++|.    |+
T Consensus       222 EIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~~PSdA~gLIRwmLmVNP~RRA----Ti  297 (668)
T KOG0611|consen  222 EIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPETPSDASGLIRWMLMVNPERRA----TI  297 (668)
T ss_pred             cccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCCCCchHHHHHHHHHhcCcccch----hH
Confidence            99999999 78999999999999999999999999999999999988877777788899999999999999998    79


Q ss_pred             hhhhcCCCCC
Q 042539          337 CEIKEHVFFK  346 (412)
Q Consensus       337 ~e~l~h~ff~  346 (412)
                      +++..|-|.+
T Consensus       298 eDiAsHWWvN  307 (668)
T KOG0611|consen  298 EDIASHWWVN  307 (668)
T ss_pred             HHHhhhheee
Confidence            9999999974

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.5e-52  Score=385.39  Aligned_cols=263  Identities=25%  Similarity=0.394  Sum_probs=223.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..--.+++|+++..|++|+||.||+|+++.++..    ||+|.++.+.  .+...-...+|||.+|.+++|||||.+-.+
T Consensus        70 ~gCrsv~efe~lnrI~EGtyGiVYRakdk~t~eI----VALKr~kmek--ek~GFPItsLREIniLl~~~H~NIV~vkEV  143 (419)
T KOG0663|consen   70 GGCRSVEEFEKLNRIEEGTYGVVYRAKDKKTDEI----VALKRLKMEK--EKEGFPITSLREINILLKARHPNIVEVKEV  143 (419)
T ss_pred             cCcccHHHHHHHhhcccCcceeEEEeccCCccee----EEeeeccccc--ccCCCcchhHHHHHHHHhcCCCCeeeeEEE
Confidence            3345678999999999999999999999987665    9999997664  344455667789999999999999999998


Q ss_pred             EEeC--CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           92 LETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        92 ~~~~--~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      ..-.  +.+|+|||||+. ||..++.... ..|.+.+++.++.|++.||+|||++.|+|||||++|+|++..|.+||+||
T Consensus       144 VvG~~~d~iy~VMe~~Eh-DLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDF  221 (419)
T KOG0663|consen  144 VVGSNMDKIYIVMEYVEH-DLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADF  221 (419)
T ss_pred             EeccccceeeeeHHHHHh-hHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEeccc
Confidence            8643  579999999966 7777777655 46999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+.+.+.                                                               ....+..+
T Consensus       222 GLAR~ygsp---------------------------------------------------------------~k~~T~lV  238 (419)
T KOG0663|consen  222 GLAREYGSP---------------------------------------------------------------LKPYTPLV  238 (419)
T ss_pred             chhhhhcCC---------------------------------------------------------------cccCcceE
Confidence            999987421                                                               12234567


Q ss_pred             cCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCCC--------------------
Q 042539          250 GTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KTPE--------------------  306 (412)
Q Consensus       250 gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~~~--------------------  306 (412)
                      -|.+|+|||++.|. .|+.++|+||+|||+.||+++.+.|.|.+..+++.+|..  +.|.                    
T Consensus       239 VTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~  318 (419)
T KOG0663|consen  239 VTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSE  318 (419)
T ss_pred             EEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCC
Confidence            89999999999986 589999999999999999999999999999888887763  1110                    


Q ss_pred             ---------CCC--CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          307 ---------FVG--QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       307 ---------~~~--~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                               |..  .++...||++.+|.+||.+|+    ||+++|+|.||.+..
T Consensus       319 ~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~----tA~~~L~h~~F~e~P  368 (419)
T KOG0663|consen  319 HPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRI----TAEDGLKHEYFRETP  368 (419)
T ss_pred             CCchhhhhhccccccchhHHHHHHHHhccCccccc----cHHHhhcccccccCC
Confidence                     111  346788999999999999999    799999999999743

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=6.9e-52  Score=395.46  Aligned_cols=277  Identities=34%  Similarity=0.619  Sum_probs=229.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|++++.||+|+||+||+|.+..++..    ||+|++.+...... .....+.+|+++++.++|+||+++++++.+++.+
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~----~avK~~~~~~~~~~-~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~   75 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKM----YACKKLEKKRIKKR-KGEAMALNEKRILEKVNSRFVVSLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCce----EEEEEeeHhhhhhh-hhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeE
Confidence            488999999999999999998875544    99999977654322 2344567799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+|||||.||+|..++.......+++..+..++.|++.||+|||++||+||||||+|||++.++.+||+|||++..... 
T Consensus        76 ~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~-  154 (285)
T cd05631          76 CLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE-  154 (285)
T ss_pred             EEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCC-
Confidence            9999999999998777655545699999999999999999999999999999999999999999999999999865311 


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     .......+||+.|+|||
T Consensus       155 ---------------------------------------------------------------~~~~~~~~g~~~y~aPE  171 (285)
T cd05631         155 ---------------------------------------------------------------GETVRGRVGTVGYMAPE  171 (285)
T ss_pred             ---------------------------------------------------------------CCeecCCCCCCCccCHh
Confidence                                                                           11112347899999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH----HHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE----TFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~----~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ++.+..++.++|||||||++|+|++|+.||.+.+...    ....+......+ ...+.++.+||++||+.||.+|++..
T Consensus       172 ~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05631         172 VINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCR  251 (285)
T ss_pred             hhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCCC
Confidence            9999999999999999999999999999998765322    222222222222 34678999999999999999999642


Q ss_pred             -CChhhhhcCCCCCCCCchhhcc-cCCCCCCCC
Q 042539          334 -RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPS  364 (412)
Q Consensus       334 -~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~  364 (412)
                       .+++++++||||.+++|+.+.. ...|||.|.
T Consensus       252 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05631         252 GNGAAGVKQHPIFKNINFKRLEANMLEPPFCPD  284 (285)
T ss_pred             CCCHHHHhcCHhhcCCCHHHHHhCcCCcCCCCC
Confidence             3589999999999999986655 568888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.6e-52  Score=374.67  Aligned_cols=255  Identities=28%  Similarity=0.470  Sum_probs=220.1

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|..++.||+|.||.||+|++..++..    ||||.|+....  ++.....+.|||+.|+.++|+||+.|+++|.+.+.
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~----VAIKKIkl~~~--kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~   75 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKR----VAIKKIKLGNA--KDGINRTALREIKLLQELKHPNIIELIDVFPHKSN   75 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcE----EEEEEeecccc--ccCccHHHHHHHHHHHHccCcchhhhhhhccCCCc
Confidence            6899999999999999999999886554    99999987753  34556778899999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +.||+||++ .||...+... ...++..+++.|+.+++.||+|||++.|+||||||.|+||+.+|.+||+|||+|+.+..
T Consensus        76 l~lVfEfm~-tdLe~vIkd~-~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~  153 (318)
T KOG0659|consen   76 LSLVFEFMP-TDLEVVIKDK-NIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGS  153 (318)
T ss_pred             eEEEEEecc-ccHHHHhccc-ccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCC
Confidence            999999994 5887776654 45799999999999999999999999999999999999999999999999999998742


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                               ......+-|.+|+||
T Consensus       154 p~---------------------------------------------------------------~~~~~~V~TRWYRAP  170 (318)
T KOG0659|consen  154 PN---------------------------------------------------------------RIQTHQVVTRWYRAP  170 (318)
T ss_pred             CC---------------------------------------------------------------cccccceeeeeccCh
Confidence            21                                                               111122778999999


Q ss_pred             eeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC---------------------------CC
Q 042539          258 EVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP---------------------------EF  307 (412)
Q Consensus       258 E~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~---------------------------~~  307 (412)
                      |++.|. .|+..+||||.|||+.||+-|.+-|.|.++-+++..|...  .|                           -+
T Consensus       171 ELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf  250 (318)
T KOG0659|consen  171 ELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLF  250 (318)
T ss_pred             HHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCcccccc
Confidence            999885 5899999999999999999999999999999888777631  11                           12


Q ss_pred             CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       308 ~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +..+.++.||+.+||.+||.+|+    ++.|+++|+||+.
T Consensus       251 ~aas~d~ldLl~~m~~ynP~~Ri----ta~qaL~~~yf~~  286 (318)
T KOG0659|consen  251 PAASSDALDLLSKMLTYNPKKRI----TASQALKHPYFKS  286 (318)
T ss_pred             ccccHHHHHHHHhhhccCchhcc----cHHHHhcchhhhc
Confidence            34567889999999999999999    6999999999985

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=1.9e-51  Score=408.60  Aligned_cols=324  Identities=28%  Similarity=0.475  Sum_probs=234.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      .+|++++.||+|+||+||+|+++.++.    .||||++.+..... ......+.+|+.+++.++|+||+++++++.+++.
T Consensus         1 ~~f~~~~~LG~G~~g~Vy~~~~~~~~~----~~aiK~i~~~~~~~-~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~   75 (381)
T cd05626           1 SMFVKIKTLGIGAFGEVCLACKVDTHA----LYAMKTLRKKDVLN-RNQVAHVKAERDILAEADNEWVVKLYYSFQDKDN   75 (381)
T ss_pred             CCceEEEEEeecCCEEEEEEEECCCCC----EEEEEEEEHHHhhh-hHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCE
Confidence            369999999999999999999887554    49999997765432 2345678889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+++.+..
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~  153 (381)
T cd05626          76 LYFVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRW  153 (381)
T ss_pred             EEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccccc
Confidence            99999999999998887654  3599999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .....  ....+. ........       ..    .+....+.+.-  .....................+++||+.|+||
T Consensus       154 ~~~~~--~~~~~~-~~~~~~~~-------~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aP  217 (381)
T cd05626         154 THNSK--YYQKGS-HIRQDSME-------PS----DLWDDVSNCRC--GDRLKTLEQRATKQHQRCLAHSLVGTPNYIAP  217 (381)
T ss_pred             ccccc--cccccc-cccccccC-------cc----ccccccccccc--ccccchhhccccccccccccccccCCccccCH
Confidence            11000  000000 00000000       00    00000000000  00000000000000111223567899999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhhh--CCCccC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLLEK--DPVKRL  330 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~~--dP~~R~  330 (412)
                      |++.+..++.++|||||||++|||++|.+||.+.+..+....+....     +.....++++++||.+||..  ++..|+
T Consensus       218 E~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~  297 (381)
T cd05626         218 EVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRN  297 (381)
T ss_pred             HHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCC
Confidence            99999999999999999999999999999999888777666665322     22335689999999997654  444588


Q ss_pred             CCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          331 GYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                          +++++++||||.+++|........+|+.|.....
T Consensus       298 ----~~~~~l~hp~f~~~~~~~~~~~~~~~~~p~~~~~  331 (381)
T cd05626         298 ----GADDIKAHPFFSEVDFSSDIRTQPAPYVPKISHP  331 (381)
T ss_pred             ----CHHHHhcCcccCCCChhHHhhcCCCCccCcCCCc
Confidence                7999999999999999865555667777765443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.6e-51  Score=398.72  Aligned_cols=277  Identities=40%  Similarity=0.703  Sum_probs=230.9

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEe
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ++.||+|+||.||+|++... ...++.||+|++++............+.+|+.+++.++||||++++++|.+++.+|+||
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~-~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   79 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTG-ADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLIL   79 (323)
T ss_pred             CceeeecCCeEEEEEEEccc-CCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEE
Confidence            47899999999999987432 23566799999987655433344556778999999999999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      ||+.||+|..++...  +.+.+..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        80 e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----  152 (323)
T cd05584          80 EYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIH-----  152 (323)
T ss_pred             eCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeeccc-----
Confidence            999999998776543  4589999999999999999999999999999999999999999999999999864311     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       153 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  174 (323)
T cd05584         153 ----------------------------------------------------------EGTVTHTFCGTIEYMAPEILMR  174 (323)
T ss_pred             ----------------------------------------------------------CCCcccccCCCccccChhhccC
Confidence                                                                      1112234679999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC-CCChhhhh
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY-LRGACEIK  340 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~-~~~~~e~l  340 (412)
                      ..++.++|||||||++|||++|+.||.+.+.......+.......+ ..++++.+||.+||++||++|++. ..++++++
T Consensus       175 ~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~  254 (323)
T cd05584         175 SGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQ  254 (323)
T ss_pred             CCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHh
Confidence            8899999999999999999999999999988888888877655443 457899999999999999999954 23699999


Q ss_pred             cCCCCCCCCchhhc-ccCCCCCCCCC
Q 042539          341 EHVFFKGVRWDLLT-DVLRPPFIPSR  365 (412)
Q Consensus       341 ~h~ff~~~~~~~~~-~~~~pp~~p~~  365 (412)
                      +||||+...|.... ....+|+.+..
T Consensus       255 ~h~~~~~~~~~~~~~~~~~~~~~~~~  280 (323)
T cd05584         255 SHPFFRHVNWDDLLARKVEPPFKPLL  280 (323)
T ss_pred             cCCCcCCCCHHHHhcCCCCCCcCCCC
Confidence            99999999997553 34445555443

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-52  Score=401.00  Aligned_cols=266  Identities=32%  Similarity=0.554  Sum_probs=221.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHH----------HHHHHHHHHHHHhhcCC
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE----------AERRARWEIRVLSRLSH   82 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~----------~~~~~~~Ei~il~~l~h   82 (412)
                      ....+++|++++.||+|.||+|-+|++...+..    ||||++.|..+.....          -.+++++||.||++|.|
T Consensus        92 ~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l----~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H  167 (576)
T KOG0585|consen   92 DRKQLNQYELIKEIGSGQYGKVKLARDEVDGKL----YAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHH  167 (576)
T ss_pred             cceehhheehhhhhcCCccceEEEEeecCCCcE----EEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999875554    9999998876532211          22478899999999999


Q ss_pred             CccceeeeeEEeC--CeEEEEeeccCCCCchhHHHhhCCCC-CCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc
Q 042539           83 PFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRV-FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR  159 (412)
Q Consensus        83 pnIv~l~~~~~~~--~~~~lv~e~~~gg~L~~~~~~~~~~~-l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~  159 (412)
                      ||||+|+++..+.  +.+|||+|||..|.+..   ...... +++.+++.|++.++.||+|||.+|||||||||+|+|++
T Consensus       168 ~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w---~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~  244 (576)
T KOG0585|consen  168 PNVVKLIEVLDDPESDKLYLVLEYCSKGEVKW---CPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLS  244 (576)
T ss_pred             cCeeEEEEeecCcccCceEEEEEeccCCcccc---CCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEc
Confidence            9999999999764  68999999999988732   223344 89999999999999999999999999999999999999


Q ss_pred             cCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc
Q 042539          160 QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF  239 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      .+|+|||+|||.+..+.....                                                          -
T Consensus       245 ~~g~VKIsDFGVs~~~~~~~~----------------------------------------------------------~  266 (576)
T KOG0585|consen  245 SDGTVKISDFGVSNEFPQGSD----------------------------------------------------------E  266 (576)
T ss_pred             CCCcEEeeccceeeecccCCc----------------------------------------------------------c
Confidence            999999999999875421100                                                          0


Q ss_pred             CCCCCCcccccCCCCccceeecCC---CC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC---CCCh
Q 042539          240 DNGERSNSFVGTEEYVSPEVVRGD---GH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV---GQRT  312 (412)
Q Consensus       240 ~~~~~~~~~~gt~~Y~APE~l~~~---~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~---~~~~  312 (412)
                      .........+|||.|||||...+.   .+ +++.||||+||+||-|+.|+.||.+....+++.+|+.....++   .+..
T Consensus       267 ~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e  346 (576)
T KOG0585|consen  267 GSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPEINE  346 (576)
T ss_pred             ccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCcccccH
Confidence            011112236899999999998773   23 7899999999999999999999999999999999998765544   4578


Q ss_pred             HHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          313 ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       313 ~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +++|||.+||.+||+.|+    ++.+++.|||...
T Consensus       347 ~~kDli~~lL~KdP~~Ri----~l~~ik~Hpwvt~  377 (576)
T KOG0585|consen  347 DLKDLIKRLLEKDPEQRI----TLPDIKLHPWVTR  377 (576)
T ss_pred             HHHHHHHHHhhcChhhee----ehhhheecceecc
Confidence            999999999999999999    6899999999864

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-54  Score=379.87  Aligned_cols=259  Identities=29%  Similarity=0.458  Sum_probs=228.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+.-++|++-++||+|.|+.|+.+.+..++.    .||+|+|....+...  ..+.+.+|++|-+.|+|||||+|++.+.
T Consensus         7 ~~f~d~y~l~e~igkG~FSvVrRc~~~~tg~----~fa~kiin~~k~~~~--~~e~l~rEarIC~~LqHP~IvrL~~ti~   80 (355)
T KOG0033|consen    7 TKFSDNYDVKEELGKGAFSVVRRCVHKTTGL----EFAAKIINTKKLSAR--DFQKLEREARICRKLQHPNIVRLHDSIQ   80 (355)
T ss_pred             cccchhhhHHHHHccCchHHHHHHHhccchH----HHHHHHhhhhhhccc--cHHHHHHHHHHHHhcCCCcEeehhhhhc
Confidence            4456789999999999999999887776554    499999977666443  4567788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC---CCEEEcccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS---GHVTLTDFD  170 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~---g~vkL~DFG  170 (412)
                      .....|+|+|++.|++|..-+-.+  ..++|..+..+++||+.||.|+|.+||||||+||+|+|+-+.   --+||+|||
T Consensus        81 ~~~~~ylvFe~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FG  158 (355)
T KOG0033|consen   81 EESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFG  158 (355)
T ss_pred             ccceeEEEEecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccc
Confidence            999999999999999996554444  348999999999999999999999999999999999999654   348999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|..+.                                                                .+.....++|
T Consensus       159 vAi~l~----------------------------------------------------------------~g~~~~G~~G  174 (355)
T KOG0033|consen  159 LAIEVN----------------------------------------------------------------DGEAWHGFAG  174 (355)
T ss_pred             eEEEeC----------------------------------------------------------------CccccccccC
Confidence            998652                                                                3445567899


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-----CCCCCChHHHHHHHHhhhhC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-----EFVGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-----~~~~~~~~~~dli~~~L~~d  325 (412)
                      ||.|||||++...+|+.++||||.|||||-|+.|++||-+.+...++++|..+..     .++.+++++++||++||..|
T Consensus       175 tP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~d  254 (355)
T KOG0033|consen  175 TPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVN  254 (355)
T ss_pred             CCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999987653     55667899999999999999


Q ss_pred             CCccCCCCCChhhhhcCCCCCCC
Q 042539          326 PVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      |.+|+    |+.|+|+|||+.+-
T Consensus       255 P~kRI----ta~EAL~HpWi~~r  273 (355)
T KOG0033|consen  255 PKKRI----TADEALKHPWICNR  273 (355)
T ss_pred             hhhhc----cHHHHhCCchhcch
Confidence            99999    79999999999863

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-52  Score=412.03  Aligned_cols=316  Identities=31%  Similarity=0.547  Sum_probs=242.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ...-.-|..++.||-|+||+|+||+...++.    .||+|.+.|.++..++ ....+..|..||..-++++||+||..|+
T Consensus       625 KMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~----lYAmKTLrKaDVl~rn-QvaHVKAERDILAEADn~WVVrLyySFQ  699 (1034)
T KOG0608|consen  625 KMDKSMFVKIKTIGVGAFGEVCLVRKVDTRA----LYAMKTLRKADVLMRN-QVAHVKAERDILAEADNEWVVRLYYSFQ  699 (1034)
T ss_pred             hccccceEEEeeecccccceeEEEeecchhh----HHHHhhhHHHHHHhhh-hhhhhhhhhhhHhhcCCcceEEEEEEec
Confidence            3445678899999999999999999887644    4999999988865543 3456777999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +++++|+||+|++|||+-.++...  +.|+|+.|++|++++.+|+++.|..|+|||||||+|||||.+|++||+|||||.
T Consensus       700 DkdnLYFVMdYIPGGDmMSLLIrm--gIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCT  777 (1034)
T KOG0608|consen  700 DKDNLYFVMDYIPGGDMMSLLIRM--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  777 (1034)
T ss_pred             cCCceEEEEeccCCccHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccc
Confidence            999999999999999998776554  469999999999999999999999999999999999999999999999999998


Q ss_pred             hhh---chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCC--CCccccccccCCCCCCccc
Q 042539          174 NLV---KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARV--SPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       174 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  248 (412)
                      .+.   ++..|.      .+...++..-      ..-.+|              .....  .....+-......-...++
T Consensus       778 GfRWTHdskYYq------~gdH~RqDSm------ep~~e~--------------~d~~~~lkvL~~ra~~~h~r~~ahsl  831 (1034)
T KOG0608|consen  778 GFRWTHDSKYYQ------EGDHHRQDSM------EPSPEW--------------ADISKCLKVLERRAMRQHQRILAHSL  831 (1034)
T ss_pred             cceecccccccc------CCCccccccC------CCchhh--------------ccccccchHHHHHHHhhhhhhhhhhh
Confidence            762   111110      0000100000      000011              00000  0000000000112234689


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~  323 (412)
                      +||+.|+|||++...+|+..|||||.|||||||+.|++||-.....++..++.+..     +...++++++.++|.+++ 
T Consensus       832 vgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~ls~e~~~li~kLc-  910 (1034)
T KOG0608|consen  832 VGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWRNFLHIPYQGNLSKEALDLIQKLC-  910 (1034)
T ss_pred             cCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehhhccccccccccCHHHHHHHHHHh-
Confidence            99999999999999999999999999999999999999999887777666665432     344567899999999876 


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSR  365 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~  365 (412)
                      .+++.|++- .++++++.||||+++||..+... +.|++|..
T Consensus       911 ~sad~RLGk-ng~d~vKaHpfFkgIDfsslRkq-~ApYIP~I  950 (1034)
T KOG0608|consen  911 CSADSRLGK-NGADQVKAHPFFKGIDFSSLRKQ-RAPYIPRI  950 (1034)
T ss_pred             cChhhhhcc-cchhhhhcCccccccchHhhhhc-cCCcCccc
Confidence            788999984 46788999999999999987664 34466644

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=2.1e-51  Score=407.45  Aligned_cols=322  Identities=31%  Similarity=0.548  Sum_probs=237.1

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||||++.+..... ......+.+|+.+++.++|+||+++++.|.+++.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~----~~avK~~~~~~~~~-~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~   75 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNA----LYAMKTLRKADVLM-RNQAAHVKAERDILAEADNEWVVKLYYSFQDKDN   75 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCC----EEEEEEEcHHHHHh-hhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCE
Confidence            479999999999999999999887544    49999997655422 2345667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+|..+..
T Consensus        76 ~~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~  153 (376)
T cd05598          76 LYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  153 (376)
T ss_pred             EEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccc
Confidence            99999999999998887654  4589999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ....  ........ ....                ...... ...........+...............+++||+.||||
T Consensus       154 ~~~~--~~~~~~~~-~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  213 (376)
T cd05598         154 THDS--KYYQKGDH-HRQD----------------SMEPSE-EWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAP  213 (376)
T ss_pred             cccc--cccccccc-cccc----------------cccccc-cccccccccccchhhhhhhhcccccccccCCCccccCH
Confidence            1000  00000000 0000                000000 00000000000000000000111223467899999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |++.+..++.++|||||||++|||++|+.||.+.+..+....+....     +.....+.++.+||.+|+ .+|.+|++.
T Consensus       214 E~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~  292 (376)
T cd05598         214 EVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGK  292 (376)
T ss_pred             HHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCC
Confidence            99999999999999999999999999999999988777766665432     223356789999999976 699999953


Q ss_pred             CCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          333 LRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                       .++.++++||||++++|..+.....+|+.|....+
T Consensus       293 -~t~~ell~h~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (376)
T cd05598         293 -NGADEIKAHPFFKGIDFASLIRRQKAPYIPKITHP  327 (376)
T ss_pred             -CCHHHHhCCCCcCCCCHHHHhhcCCCCCCCcCCCc
Confidence             26999999999999999877666667777665443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=6.4e-51  Score=395.88  Aligned_cols=277  Identities=32%  Similarity=0.630  Sum_probs=233.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~   97 (412)
                      +|.+++.||+|+||+||+|+++.++.    .||||++++..... .........|+.++..+. |++|+++++++.+.+.
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~   75 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDE----LYAIKILKKDVVIQ-DDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDR   75 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCE
Confidence            68999999999999999999887544    49999998764322 233445666888888885 8999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.||+|..++...  +.+++.++..++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~  153 (323)
T cd05616          76 LYFVMEYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMW  153 (323)
T ss_pred             EEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCC
Confidence            99999999999998776554  3599999999999999999999999999999999999999999999999999864310


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ........+||+.|+||
T Consensus       154 ---------------------------------------------------------------~~~~~~~~~gt~~y~aP  170 (323)
T cd05616         154 ---------------------------------------------------------------DGVTTKTFCGTPDYIAP  170 (323)
T ss_pred             ---------------------------------------------------------------CCCccccCCCChhhcCH
Confidence                                                                           11122356799999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~  335 (412)
                      |++.+..++.++|||||||++|||++|+.||.+.+..+.+..+......++ ..+.++.+||.+||++||.+|++.. ..
T Consensus       171 E~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~  250 (323)
T cd05616         171 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEG  250 (323)
T ss_pred             HHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCC
Confidence            999999999999999999999999999999999988888888877665543 4678999999999999999999753 24


Q ss_pred             hhhhhcCCCCCCCCchhhcc-cCCCCCCCCC
Q 042539          336 ACEIKEHVFFKGVRWDLLTD-VLRPPFIPSR  365 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~  365 (412)
                      ..++++|+||+.++|..... ...||+.|..
T Consensus       251 ~~~i~~h~~~~~~~~~~~~~~~~~~~~~~~~  281 (323)
T cd05616         251 ERDIKEHAFFRYIDWEKLERKEVQPPYKPKA  281 (323)
T ss_pred             HHHHhcCCCcCCCCHHHHHhCCCCCCcCCcC
Confidence            68999999999999986654 4567777653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.2e-51  Score=405.04  Aligned_cols=302  Identities=32%  Similarity=0.556  Sum_probs=231.6

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||||++++.... .......+.+|+.++..++|+||+++++.+++++.
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   75 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGH----IYAMKILRKADML-EKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRN   75 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCC----EEEEEEEEHHHHh-hhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE
Confidence            589999999999999999999887554    4999999765432 23345677889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++..++.++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++.+..
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~  153 (360)
T cd05627          76 LYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKK  153 (360)
T ss_pred             EEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCccccc
Confidence            99999999999998877654  3599999999999999999999999999999999999999999999999999976532


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ........                           ..+..... .........................+.+||+.|+||
T Consensus       154 ~~~~~~~~---------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  205 (360)
T cd05627         154 AHRTEFYR---------------------------NLTHNPPS-DFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAP  205 (360)
T ss_pred             cccccccc---------------------------ccccCCcc-cccccccccccccccccccccccccccCCCccccCH
Confidence            11100000                           00000000 000000000000000000111223467899999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |++.+..++.++|||||||++|||++|++||.+.+..+.+.+++...     +.....+.++++||.+|+ .||.+|++.
T Consensus       206 E~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~  284 (360)
T cd05627         206 EVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFPPEVPISEKAKDLILRFC-TDSENRIGS  284 (360)
T ss_pred             HHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhc-cChhhcCCC
Confidence            99999999999999999999999999999999988888888777532     222346789999999987 499999963


Q ss_pred             CCChhhhhcCCCCCCCCchhhccc
Q 042539          333 LRGACEIKEHVFFKGVRWDLLTDV  356 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~~~~~~~~~  356 (412)
                       .+++++++||||++++|..+...
T Consensus       285 -~~~~ei~~hp~f~~~~~~~~~~~  307 (360)
T cd05627         285 -NGVEEIKSHPFFEGVDWGHIRER  307 (360)
T ss_pred             -CCHHHHhcCCCCCCCCHHHHhcC
Confidence             36899999999999999877553

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-52  Score=388.13  Aligned_cols=272  Identities=25%  Similarity=0.366  Sum_probs=225.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe---
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET---   94 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~---   94 (412)
                      ..|..++.||+|+||.|+.|.++.++..    ||||.+...  .......++..||+++|+.++|+||+.+++++..   
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~----VAIKKi~~~--F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~   95 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEK----VAIKKILNP--FENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSR   95 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCE----eehhhhhhh--hhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccc
Confidence            3555689999999999999999987644    999998532  3445678889999999999999999999999965   


Q ss_pred             --CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           95 --DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        95 --~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                        -+.+|+|+|+| +.||...+..+..  +++..++.+++||+.||+|+|+.||+||||||.|+|++.++.+||||||+|
T Consensus        96 ~~f~DvYiV~elM-etDL~~iik~~~~--L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLA  172 (359)
T KOG0660|consen   96 DKFNDVYLVFELM-ETDLHQIIKSQQD--LTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLA  172 (359)
T ss_pred             cccceeEEehhHH-hhHHHHHHHcCcc--ccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccce
Confidence              25799999999 7788888776543  999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.....                                                             ......+..+.|.
T Consensus       173 R~~~~~-------------------------------------------------------------~~~~~mTeYVaTR  191 (359)
T KOG0660|consen  173 RYLDKF-------------------------------------------------------------FEDGFMTEYVATR  191 (359)
T ss_pred             eecccc-------------------------------------------------------------Ccccchhcceeee
Confidence            876321                                                             1122234568899


Q ss_pred             CCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------------------C---
Q 042539          253 EYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----------------------P---  305 (412)
Q Consensus       253 ~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----------------------~---  305 (412)
                      +|.|||++.. ..|+.++||||+|||+.||++|++.|.|.+..+++..|+.-.                       +   
T Consensus       192 WYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p  271 (359)
T KOG0660|consen  192 WYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIP  271 (359)
T ss_pred             eecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCC
Confidence            9999999764 679999999999999999999999999998877766654211                       1   


Q ss_pred             ------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCC
Q 042539          306 ------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP  363 (412)
Q Consensus       306 ------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p  363 (412)
                            .++..++.+.||+.+||+.||.+|+    |++|+|+|||+....-...+....++|.+
T Consensus       272 ~~~f~~~fp~a~p~AidLlekmL~fdP~kRi----ta~eAL~hPYl~~~hdp~dEP~~~~~~~~  331 (359)
T KOG0660|consen  272 KQPFSSIFPNANPLAIDLLEKMLVFDPKKRI----TAEEALAHPYLAPYHDPEDEPVCQPIFDS  331 (359)
T ss_pred             CCCHHHHcCCCCHHHHHHHHHHhccCccccC----CHHHHhcChhhhhhcCCccCCCCCCCCcc
Confidence                  1346678999999999999999999    79999999999987655444445555543

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.4e-51  Score=408.02  Aligned_cols=326  Identities=30%  Similarity=0.534  Sum_probs=238.1

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      .+|+++++||+|+||+||+|+++.++.    .||+|++.+.... .......+.+|+.++++++|+|||++++.|.+++.
T Consensus         1 ~~f~~~~~LG~G~~g~Vy~a~~~~~~~----~~aiK~i~~~~~~-~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~   75 (382)
T cd05625           1 SMFVKIKTLGIGAFGEVCLARKVDTKA----LYAMKTLRKKDVL-LRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDN   75 (382)
T ss_pred             CCcEEEEEEEeCCCEEEEEEEECCCCC----EEEEEEEeHHHhh-hHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCE
Confidence            369999999999999999999887554    4999999775432 23345677889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+.+..
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~  153 (382)
T cd05625          76 LYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  153 (382)
T ss_pred             EEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccccc
Confidence            99999999999998877654  3589999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ......  ...+.. ......   .   +...|     .....+.  ......+...............+.+||+.|+||
T Consensus       154 ~~~~~~--~~~~~~-~~~~~~---~---~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aP  217 (382)
T cd05625         154 THDSKY--YQSGDH-VRQDSM---D---FSNEW-----GDPANCR--CGDRLKPLERRAARQHQRCLAHSLVGTPNYIAP  217 (382)
T ss_pred             cccccc--cccccc-cccccc---c---ccccc-----ccccccc--ccccccchhhhhccccccccccccccCcccCCH
Confidence            110000  000000 000000   0   00000     0000000  000000000000000111223467899999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |++.+..++.++|||||||++|||++|++||.+.+..+...++....     +.....++++.++|.+|+ .+|.+|++.
T Consensus       218 E~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~  296 (382)
T cd05625         218 EVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGK  296 (382)
T ss_pred             HHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCC
Confidence            99999999999999999999999999999999988877777766432     233456899999999986 599999952


Q ss_pred             CCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          333 LRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                       .+++++++||||++++|........+|+.|.....
T Consensus       297 -~~~~ei~~hp~f~~~~~~~~~~~~~~~~~~~~~~~  331 (382)
T cd05625         297 -NGADEIKAHPFFKTIDFSSDLRQQSAPYIPKITHP  331 (382)
T ss_pred             -CCHHHHhcCCCcCCcChHHHHhcCCCCccCcCCCc
Confidence             35999999999999999865455667777775544

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=4.2e-51  Score=396.81  Aligned_cols=273  Identities=35%  Similarity=0.665  Sum_probs=230.2

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ++||+|+||+||+|+++.++.    .||||++++..... ......+..|++++..+ +||||++++++|.+++.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~   75 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDE----VYAIKVLKKDVILQ-DDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVM   75 (321)
T ss_pred             CccccCCCeEEEEEEECCCCC----EEEEEEEeHHHhhh-hhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEE
Confidence            469999999999999877544    49999997764422 33445566789999876 6999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~-----  148 (321)
T cd05591          76 EYVNGGDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGIL-----  148 (321)
T ss_pred             eCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceeccc-----
Confidence            999999998776544  3589999999999999999999999999999999999999999999999999864311     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (321)
T cd05591         149 ----------------------------------------------------------NGVTTTTFCGTPDYIAPEILQE  170 (321)
T ss_pred             ----------------------------------------------------------CCccccccccCccccCHHHHcC
Confidence                                                                      1112234579999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCCC---Chhh
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYLR---GACE  338 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~~---~~~e  338 (412)
                      ..++.++|||||||++|+|++|+.||.+.+..+.+..+......++. .+.++.+||.+||+.||++|+++..   ++++
T Consensus       171 ~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~  250 (321)
T cd05591         171 LEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDA  250 (321)
T ss_pred             CCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHH
Confidence            89999999999999999999999999999988888888876655443 5789999999999999999997654   7999


Q ss_pred             hhcCCCCCCCCchhhcc-cCCCCCCCCCC
Q 042539          339 IKEHVFFKGVRWDLLTD-VLRPPFIPSRE  366 (412)
Q Consensus       339 ~l~h~ff~~~~~~~~~~-~~~pp~~p~~~  366 (412)
                      +++||||.+++|..+.. ...+||.|...
T Consensus       251 ~~~hp~~~~~~~~~~~~~~~~~~~~~~~~  279 (321)
T cd05591         251 IKQHPFFKEIDWVLLEQRKIKPPFKPKIK  279 (321)
T ss_pred             HhcCCccCCCCHHHHHhCCCCCCCCCCCC
Confidence            99999999999986644 34566666543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=7.8e-51  Score=395.26  Aligned_cols=274  Identities=39%  Similarity=0.701  Sum_probs=227.3

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHH-HHhhcCCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-VLSRLSHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~-il~~l~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||+|++.+........ ...+..|.. +++.++||||+++++++.+.+.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~~~~~-~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~   75 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGK----FYAVKVLQKKAILKKKE-QKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVL   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEHHHHhhhhH-HHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEE
Confidence            479999999999999987554    49999998765433332 334444554 567889999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~-----  148 (323)
T cd05575          76 DYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIE-----  148 (323)
T ss_pred             cCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCccccc-----
Confidence            999999998776543  3599999999999999999999999999999999999999999999999999864310     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (323)
T cd05575         149 ----------------------------------------------------------HSKTTSTFCGTPEYLAPEVLRK  170 (323)
T ss_pred             ----------------------------------------------------------CCCccccccCChhhcChhhhcC
Confidence                                                                      1112234579999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++.++|||||||++|+|++|..||.+.+..+.+.++....... +..+..+.++|.+||+.||.+|++......++++
T Consensus       171 ~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~  250 (323)
T cd05575         171 QPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKN  250 (323)
T ss_pred             CCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHc
Confidence            999999999999999999999999999988888888887654333 4568899999999999999999986666789999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      ||||..++|..+.. ...+|+.|....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (323)
T cd05575         251 HVFFSSINWDDLVNKKITPPFNPNVSG  277 (323)
T ss_pred             CCCcCCCCHHHHhhccCCCCcCCCCCC
Confidence            99999999976543 456677765443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.7e-51  Score=396.50  Aligned_cols=273  Identities=39%  Similarity=0.680  Sum_probs=234.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||.||+|++..++.    .||||++++..... ......+.+|+.+++.++||||+++++++.+++.
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~   75 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGE----IVALKRMKKSLLFK-LNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEY   75 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCC----EEEEEEEEHHHHhh-hhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCE
Confidence            479999999999999999999987554    49999998765432 2345567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~  153 (333)
T cd05600          76 LYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT  153 (333)
T ss_pred             EEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc
Confidence            99999999999998887654  3589999999999999999999999999999999999999999999999999865321


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                        .....+||+.|+||
T Consensus       154 ------------------------------------------------------------------~~~~~~gt~~y~aP  167 (333)
T cd05600         154 ------------------------------------------------------------------YANSVVGSPDYMAP  167 (333)
T ss_pred             ------------------------------------------------------------------ccCCcccCccccCh
Confidence                                                                              12345799999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCC----CCChHHHHHHHHhhhhCCCc
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFV----GQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~----~~~~~~~dli~~~L~~dP~~  328 (412)
                      |++.+..++.++|||||||++|||++|..||.+.+..+.+..+....     +...    ..++++.+||.+||..+|.+
T Consensus       168 E~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~r  247 (333)
T cd05600         168 EVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRR  247 (333)
T ss_pred             hHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhh
Confidence            99999999999999999999999999999999988877776665322     2221    45789999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          329 RLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                      |+    +++++++||||++++|..+. ...||+.|.....
T Consensus       248 r~----s~~~ll~h~~~~~~~~~~~~-~~~~~~~~~~~~~  282 (333)
T cd05600         248 FG----SLEDIKNHPFFKEVDWNELR-ELKPPFVPELESE  282 (333)
T ss_pred             cC----CHHHHHhCcccCCCCHHHHh-hCCCCCCCCCCCc
Confidence            98    69999999999999998776 5677888876554

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-51  Score=401.57  Aligned_cols=305  Identities=37%  Similarity=0.672  Sum_probs=238.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|++..++.    .||||++++..... ......+.+|+.++..++|+||+++++++.+++.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQ----VYAMKVLRKSDMIK-RNQIAHVRAERDILADADSPWIVKLYYSFQDEEH   75 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCC----EEEEEEEEHHHHhh-ccHHHHHHHHHHHHHhcCCCCccchhhheecCCe
Confidence            589999999999999999999987544    49999998765432 2345567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.|++|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  153 (350)
T cd05573          76 LYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNK  153 (350)
T ss_pred             EEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcc
Confidence            99999999999998887655  4599999999999999999999999999999999999999999999999999976532


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ...........                             .....  . .. ....... ...........+||+.|+||
T Consensus       154 ~~~~~~~~~~~-----------------------------~~~~~--~-~~-~~~~~~~-~~~~~~~~~~~~gt~~y~aP  199 (350)
T cd05573         154 AKDREYYLNDS-----------------------------HNLLF--R-DN-VLVRRRD-HKQRRVRANSTVGTPDYIAP  199 (350)
T ss_pred             cCccccccccc-----------------------------ccccc--c-cc-ccccccc-cccccccccccccCccccCH
Confidence            21000000000                             00000  0 00 0000000 00111223456799999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--C---CCCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--K---TPEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~---~~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |++.+..++.++|||||||++|+|++|+.||.+.+..+...++..  .   .+.....++++.+||.+||. ||.+|++ 
T Consensus       200 E~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~~-  277 (350)
T cd05573         200 EVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-DPEDRLG-  277 (350)
T ss_pred             HHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-ChhhcCC-
Confidence            999999999999999999999999999999999888777777765  2   23334468999999999997 9999994 


Q ss_pred             CCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          333 LRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                        +++++++||||++++|+... ...+|+.|.....
T Consensus       278 --s~~~ll~hp~~~~~~~~~~~-~~~~~~~~~~~~~  310 (350)
T cd05573         278 --SFEEIKSHPFFKGIDWENLR-ETKPPFVPELSSP  310 (350)
T ss_pred             --CHHHHhcCCCcCCCCHHHHh-hCCCCcCCCCCCc
Confidence              39999999999999998776 4557777765544

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=5.8e-51  Score=395.78  Aligned_cols=275  Identities=35%  Similarity=0.653  Sum_probs=230.2

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||||++++..... ......+.+|+.++..+ +||||+++++++.+.+.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~   75 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGR----LYAVKVLKKDVILQ-DDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVM   75 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCC----EEEEEEEEHHHHhh-ccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEE
Confidence            479999999999999887554    49999998765432 23345566788888877 5999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  ..+++..+..++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 Ey~~~g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~-----  148 (320)
T cd05590          76 EFVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIF-----  148 (320)
T ss_pred             cCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCc-----
Confidence            999999998776544  3599999999999999999999999999999999999999999999999999864310     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (320)
T cd05590         149 ----------------------------------------------------------NGKTTSTFCGTPDYIAPEILQE  170 (320)
T ss_pred             ----------------------------------------------------------CCCcccccccCccccCHHHHcC
Confidence                                                                      1112234579999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC--CChhhh
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL--RGACEI  339 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~--~~~~e~  339 (412)
                      ..++.++|||||||++|+|++|+.||.+.+..+.+..+......++ ..+.++.+||.+||+.||.+|++..  ...+++
T Consensus       171 ~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~  250 (320)
T cd05590         171 MLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAI  250 (320)
T ss_pred             CCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHH
Confidence            8899999999999999999999999999998888888877665544 3678999999999999999999642  124899


Q ss_pred             hcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          340 KEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       340 l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      ++||||++++|+.+.. ...|||.|.....
T Consensus       251 ~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~  280 (320)
T cd05590         251 LRHPFFKELDWEKLNRRQIEPPFRPRIKSR  280 (320)
T ss_pred             HcCCCcCCCCHHHHHhCCCCCCcCCCCCCc
Confidence            9999999999987654 4567787775443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=8.1e-51  Score=395.27  Aligned_cols=275  Identities=36%  Similarity=0.673  Sum_probs=230.0

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||.||+|+++.++.    .||+|++++..... ......+.+|+++++.++||||++++++|..++.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E   75 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGR----YYAMKILRKEVIIA-KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----EEEEEEEEHHHhhh-hHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEe
Confidence            479999999999999877554    49999997765432 2334566779999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      ||.||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....      
T Consensus        76 ~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~------  147 (323)
T cd05595          76 YANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS------  147 (323)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccC------
Confidence            99999997766543  3589999999999999999999999999999999999999999999999998864210      


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                               ........+||+.|+|||++.+.
T Consensus       148 ---------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~  170 (323)
T cd05595         148 ---------------------------------------------------------DGATMKTFCGTPEYLAPEVLEDN  170 (323)
T ss_pred             ---------------------------------------------------------CCCccccccCCcCcCCcccccCC
Confidence                                                                     01112345799999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CChhhhhc
Q 042539          264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKE  341 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~~~e~l~  341 (412)
                      .++.++|||||||++|+|++|+.||.+.+.......+......++ ..++++.+||.+||..||.+|++.. .++.++++
T Consensus       171 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         171 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             CCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence            999999999999999999999999999888888877776554443 4678999999999999999998542 37999999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      |+||.+++|..... ...||+.|.....
T Consensus       251 h~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (323)
T cd05595         251 HRFFLSINWQDVVQKKLLPPFKPQVTSE  278 (323)
T ss_pred             CCCcCCCCHHHHHhCCCCCCcCCCCCCh
Confidence            99999999985543 4456666655443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-51  Score=389.08  Aligned_cols=272  Identities=27%  Similarity=0.420  Sum_probs=235.7

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCcccee
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKL   88 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l   88 (412)
                      ......+..++|++..+||.|.-++||+|+...++..    ||||++..+..+.   ....+++|++.|..++||||+++
T Consensus        17 ~~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~----VAIK~inLEkc~~---~ld~l~kE~~~msl~~HPNIv~~   89 (516)
T KOG0582|consen   17 SEKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEV----VAIKIINLEKCNN---DLDALRKEVQTMSLIDHPNIVTY   89 (516)
T ss_pred             ccccCCCCccceeEEEEEeccceeEeeeeeecccCCE----EEEEEeehhhhhh---hHHHHHHHHHHhhhcCCCCcceE
Confidence            3456789999999999999999999999999987655    9999998776533   25678889999999999999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      +.+|..+..+|+||.||.+|++.+++...-...|+|..+..++++++.||.|||++|.||||||+.||||+.+|.|||+|
T Consensus        90 ~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLad  169 (516)
T KOG0582|consen   90 HCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLAD  169 (516)
T ss_pred             EEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcC
Confidence            99999999999999999999999998887777799999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||.+-.+..+..                                                           ....+.+++
T Consensus       170 Fgvsa~l~~~G~-----------------------------------------------------------R~~~rf~tf  190 (516)
T KOG0582|consen  170 FGVSASLFDSGD-----------------------------------------------------------RQVTRFNTF  190 (516)
T ss_pred             ceeeeeecccCc-----------------------------------------------------------eeeEeeccc
Confidence            998865532110                                                           111122688


Q ss_pred             ccCCCCccceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-----------CCChHHH
Q 042539          249 VGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-----------GQRTALT  315 (412)
Q Consensus       249 ~gt~~Y~APE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~  315 (412)
                      +||+.|||||++..  .+|++|+||||||++..||.+|..||......+++..-+.+.++.+           ..++.++
T Consensus       191 vgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~  270 (516)
T KOG0582|consen  191 VGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFR  270 (516)
T ss_pred             cCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHH
Confidence            99999999999654  4799999999999999999999999999888887777676665422           2346799


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      .+|..||++||++||    +++++++|+||+.+.-
T Consensus       271 e~i~~CL~kDP~kRp----tAskLlkh~FFk~~k~  301 (516)
T KOG0582|consen  271 EMIALCLVKDPSKRP----TASKLLKHAFFKKAKS  301 (516)
T ss_pred             HHHHHHhhcCcccCC----CHHHHhccHHHhhccc
Confidence            999999999999999    7999999999987653

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.2e-51  Score=393.64  Aligned_cols=270  Identities=39%  Similarity=0.719  Sum_probs=228.2

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||+|+||+||+|++..++.    .||+|++++..... ......+.+|+.++++++||||+++++++.+++.+|+|||||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~----~~aiK~i~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   75 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQR----IYALKTIRKAHIVS-RSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFI   75 (312)
T ss_pred             CCcCCCeEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCC
Confidence            7999999999999877544    49999997654322 233456778999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhc
Q 042539          106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS  185 (412)
Q Consensus       106 ~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~  185 (412)
                      .||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....        
T Consensus        76 ~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~--------  145 (312)
T cd05585          76 NGGELFHHLQRE--GRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMK--------  145 (312)
T ss_pred             CCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCcc--------
Confidence            999998777654  4599999999999999999999999999999999999999999999999999864311        


Q ss_pred             ccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCC
Q 042539          186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  265 (412)
                                                                             ........+||+.|+|||++.+..+
T Consensus       146 -------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~  170 (312)
T cd05585         146 -------------------------------------------------------DDDKTNTFCGTPEYLAPELLLGHGY  170 (312)
T ss_pred             -------------------------------------------------------CCCccccccCCcccCCHHHHcCCCC
Confidence                                                                   1112235679999999999999999


Q ss_pred             CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCC
Q 042539          266 EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       266 ~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~f  344 (412)
                      +.++|||||||++|+|++|+.||.+.+..+.+..+......++ ..++++++||.+||..||.+|++. .++.+++.|||
T Consensus       171 ~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~-~~~~e~l~hp~  249 (312)
T cd05585         171 TKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGY-NGAQEIKNHPF  249 (312)
T ss_pred             CCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCC-CCHHHHHcCCC
Confidence            9999999999999999999999999888888888877655543 467899999999999999999975 36899999999


Q ss_pred             CCCCCchhhcc-cCCCCCCCCCC
Q 042539          345 FKGVRWDLLTD-VLRPPFIPSRE  366 (412)
Q Consensus       345 f~~~~~~~~~~-~~~pp~~p~~~  366 (412)
                      |+..+|..... ...+++.|...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~  272 (312)
T cd05585         250 FSQLSWKKLLMKGIQPPFKPAVS  272 (312)
T ss_pred             cCCCCHHHHHhCCCCCCcCCCCC
Confidence            99999875533 34556665543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=5.7e-51  Score=397.25  Aligned_cols=275  Identities=39%  Similarity=0.679  Sum_probs=230.2

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||.||+|+++.++.    .||+|++.+..... ......+.+|+++++.++||||+++++++..++.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----~~avK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~E   75 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGK----YYAMKILKKEVIIA-KDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVME   75 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEe
Confidence            479999999999999887554    49999997765432 2345567789999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.||+|..++...  ..+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....      
T Consensus        76 y~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~------  147 (328)
T cd05593          76 YVNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT------  147 (328)
T ss_pred             CCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCC------
Confidence            99999997766543  4599999999999999999999999999999999999999999999999999864311      


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                               ........+||+.|+|||++.+.
T Consensus       148 ---------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~  170 (328)
T cd05593         148 ---------------------------------------------------------DAATMKTFCGTPEYLAPEVLEDN  170 (328)
T ss_pred             ---------------------------------------------------------cccccccccCCcCccChhhhcCC
Confidence                                                                     01112345799999999999998


Q ss_pred             CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CChhhhhc
Q 042539          264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKE  341 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~~~e~l~  341 (412)
                      .++.++|||||||++|+|++|+.||.+.+..+....+......++ ..+.++.+||.+||.+||.+|++.. .++.++++
T Consensus       171 ~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         171 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             CCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence            899999999999999999999999999888887777766554443 4678999999999999999998542 37999999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      |+||.+++|..+.. ...+|+.|.....
T Consensus       251 h~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (328)
T cd05593         251 HSFFTGVNWQDVYDKKLVPPFKPQVTSE  278 (328)
T ss_pred             CCCcCCCCHHHHHhCCCCCCcCCcCCCc
Confidence            99999999986544 3456666655433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=9.8e-51  Score=394.15  Aligned_cols=274  Identities=40%  Similarity=0.695  Sum_probs=226.4

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHH-HHHhhcCCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI-RVLSRLSHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei-~il~~l~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ++||+|+||+||+|++..++.    .||+|++.+...... .....+.+|+ .+++.++||||+++++++.+.+.+|+||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~~-~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   75 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGS----FYAVKVLQKKTILKK-KEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVL   75 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----EEEEEEEEHHHHHHh-hHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEE
Confidence            479999999999999877544    499999987654322 2234444455 4678899999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|...+...  ..+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~-----  148 (321)
T cd05603          76 DYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVE-----  148 (321)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCC-----
Confidence            999999997666543  4589999999999999999999999999999999999999999999999999864210     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (321)
T cd05603         149 ----------------------------------------------------------PEETTSTFCGTPEYLAPEVLRK  170 (321)
T ss_pred             ----------------------------------------------------------CCCccccccCCcccCCHHHhcC
Confidence                                                                      0111234679999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++.++|||||||++|||++|..||.+.+....+..+......++ ..+.++.++|.+||+.||.+|++...+..++++
T Consensus       171 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~  250 (321)
T cd05603         171 EPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKN  250 (321)
T ss_pred             CCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhC
Confidence            8899999999999999999999999999988888888776554443 467889999999999999999987667889999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      |+||..++|..+.. ...+++.+....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (321)
T cd05603         251 HVFFSPINWDDLYHKRITPPYNPNVAG  277 (321)
T ss_pred             CCCcCCCCHHHHhcCCCCCCcCCCCCC
Confidence            99999999986643 445666555433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=9.7e-51  Score=394.94  Aligned_cols=272  Identities=39%  Similarity=0.694  Sum_probs=225.2

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHH-HHHhhcCCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI-RVLSRLSHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei-~il~~l~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||+|++.+........ ...+..|. .+++.++|+||+++++++.+++.+|+||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~----~~aiK~~~~~~~~~~~~-~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~   75 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEK----FYAVKVLQKKAILKKKE-EKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVL   75 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEHHHHHhhhH-HHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEE
Confidence            479999999999999887544    49999997765432222 23333444 4567889999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  ..+.+..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~-----  148 (325)
T cd05602          76 DYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE-----  148 (325)
T ss_pred             eCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCccccc-----
Confidence            999999998777653  3589999999999999999999999999999999999999999999999999864311     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (325)
T cd05602         149 ----------------------------------------------------------HNGTTSTFCGTPEYLAPEVLHK  170 (325)
T ss_pred             ----------------------------------------------------------CCCCcccccCCccccCHHHHcC
Confidence                                                                      1112235679999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++.++|||||||++|+|++|.+||.+.+..+.+..+...... .+..++.+.++|.+||++||.+|++......++++
T Consensus       171 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~  250 (325)
T cd05602         171 QPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKN  250 (325)
T ss_pred             CCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhc
Confidence            99999999999999999999999999998888888887765433 34678999999999999999999987667789999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSR  365 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~  365 (412)
                      |+||..++|+.+.. ...+|+.|..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~  275 (325)
T cd05602         251 HIFFSPINWDDLINKKITPPFNPNV  275 (325)
T ss_pred             CcccCCCCHHHHHhCCCCcCcCCCC
Confidence            99999999986543 3455555543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.9e-50  Score=392.79  Aligned_cols=277  Identities=32%  Similarity=0.643  Sum_probs=232.2

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC-CccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-PFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h-pnIv~l~~~~~~~~~   97 (412)
                      +|++++.||+|+||.||+|+++.++.    .||||++.+..... ......+..|++++..+.| ++|+++++++.+.+.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~----~~avK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~   75 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDE----LYAIKILKKDVIIQ-DDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR   75 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCE
Confidence            68999999999999999999887544    49999998765422 2344567779999999976 568999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05587          76 LYFVMEYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIF  153 (324)
T ss_pred             EEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCC
Confidence            99999999999998776544  3589999999999999999999999999999999999999999999999999864210


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ........+||+.|+||
T Consensus       154 ---------------------------------------------------------------~~~~~~~~~gt~~y~aP  170 (324)
T cd05587         154 ---------------------------------------------------------------GGKTTRTFCGTPDYIAP  170 (324)
T ss_pred             ---------------------------------------------------------------CCCceeeecCCccccCh
Confidence                                                                           11122356799999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCC-C
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLR-G  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~-~  335 (412)
                      |++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+......++ ..+.++.++|.+||.+||.+|++... .
T Consensus       171 E~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~  250 (324)
T cd05587         171 EIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTG  250 (324)
T ss_pred             hhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCC
Confidence            999999999999999999999999999999999998888888877665544 46789999999999999999997532 3


Q ss_pred             hhhhhcCCCCCCCCchhhcc-cCCCCCCCCC
Q 042539          336 ACEIKEHVFFKGVRWDLLTD-VLRPPFIPSR  365 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~  365 (412)
                      .+++++||||++++|..+.. ...+|+.|..
T Consensus       251 ~~~~~~hp~~~~~~~~~~~~~~~~~~~~~~~  281 (324)
T cd05587         251 ERDIREHAFFRRIDWEKLERREIQPPFKPKV  281 (324)
T ss_pred             HHHHhcCCCcCCCCHHHHHhCCCCCCccCcC
Confidence            58999999999999986644 3455665554

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.4e-52  Score=398.38  Aligned_cols=261  Identities=27%  Similarity=0.411  Sum_probs=222.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .....+.|+.+++||+|+||.||+|++..++..    ||+|.+..+..  +........|||.||++|+||||++|.+..
T Consensus       112 ~~r~~~~feki~kIGeGTyg~VYkAr~~~tgki----vALKKvr~d~~--~~~~~~t~~REI~ILr~l~HpNIikL~eiv  185 (560)
T KOG0600|consen  112 GPRRADSFEKIEKIGEGTYGQVYKARDLETGKI----VALKKVRFDNE--KEGFPITAIREIKILRRLDHPNIIKLEEIV  185 (560)
T ss_pred             cccchHHHHHHHHhcCcchhheeEeeecccCcE----EEEEEeecccC--CCcchHHHHHHHHHHHhcCCCcccceeeEE
Confidence            356778999999999999999999999886655    99999987753  456677888999999999999999999998


Q ss_pred             EeC--CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           93 ETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        93 ~~~--~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ...  ..+|||+|||+. ||.-++.. ..-.|++.++++|+.||+.||+|||++||+|||||.+|||||.+|.+||+|||
T Consensus       186 t~~~~~siYlVFeYMdh-DL~GLl~~-p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFG  263 (560)
T KOG0600|consen  186 TSKLSGSIYLVFEYMDH-DLSGLLSS-PGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFG  263 (560)
T ss_pred             EecCCceEEEEEecccc-hhhhhhcC-CCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEecccc
Confidence            776  689999999976 66555543 33469999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      ||+.+...                                                              .....++.+-
T Consensus       264 LAr~y~~~--------------------------------------------------------------~~~~~T~rVv  281 (560)
T KOG0600|consen  264 LARFYTPS--------------------------------------------------------------GSAPYTSRVV  281 (560)
T ss_pred             ceeeccCC--------------------------------------------------------------CCcccccceE
Confidence            99876321                                                              1122445678


Q ss_pred             CCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCCC---------------------
Q 042539          251 TEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KTPE---------------------  306 (412)
Q Consensus       251 t~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~~~---------------------  306 (412)
                      |.+|+|||++.|. .|+.++|+||.||||.||+.|++.|.|.++.+++..|..  +.|.                     
T Consensus       282 TLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y  361 (560)
T KOG0600|consen  282 TLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPY  361 (560)
T ss_pred             EeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcc
Confidence            9999999999996 589999999999999999999999999999999888863  1110                     


Q ss_pred             -------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          307 -------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       307 -------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                             +...+..+.+|+..||..||.+|.    ||.++|+|+||..
T Consensus       362 ~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~----tA~~aL~seyF~t  405 (560)
T KOG0600|consen  362 KRRLRETFKDFPASALDLLEKLLSLDPDKRG----TASSALQSEYFTT  405 (560)
T ss_pred             cchHHHHhccCCHHHHHHHHHHhccCccccc----cHHHHhcCccccc
Confidence                   113456788999999999999998    7999999999954

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6e-52  Score=381.21  Aligned_cols=288  Identities=35%  Similarity=0.683  Sum_probs=245.6

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLL   89 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~   89 (412)
                      ..+.+.+++|.++++||+|+|++|.+++.+.+++.    ||+|+++|+..+. .+...-++.|..++.+.. ||++|.|+
T Consensus       243 ~~~~l~l~df~ll~vigrgsyakvl~~~~~~t~qi----yamkvvkkel~nd-dedidwvqtek~vfe~asn~pflvglh  317 (593)
T KOG0695|consen  243 ISQGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQI----YAMKVVKKELVND-DEDIDWVQTEKHVFEQASNNPFLVGLH  317 (593)
T ss_pred             cccccccccceeeeeecCcchhhhhheehccccee----eehhhHHHHhcCC-cccchhHHhhHHHHHhccCCCeEEehh
Confidence            35678899999999999999999999999886655    9999998876644 445556777999999885 99999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      .+|+++..+++|.||++||+|-..+..  .+.++|+.|++|..+|+.||.|||+.|||+||||.+|+|+|..|++||+|+
T Consensus       318 scfqtesrlffvieyv~ggdlmfhmqr--qrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdy  395 (593)
T KOG0695|consen  318 SCFQTESRLFFVIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDY  395 (593)
T ss_pred             hhhcccceEEEEEEEecCcceeeehhh--hhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeeccc
Confidence            999999999999999999999544443  445999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.-.                                                               ..+..++++|
T Consensus       396 gmcke~l---------------------------------------------------------------~~gd~tstfc  412 (593)
T KOG0695|consen  396 GMCKEGL---------------------------------------------------------------GPGDTTSTFC  412 (593)
T ss_pred             chhhcCC---------------------------------------------------------------CCCccccccc
Confidence            9997542                                                               3455677999


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCC-------CCHHH-HHHHHhcCCCCCC-CCChHHHHHHHH
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG-------KNRKE-TFRNVLMKTPEFV-GQRTALTDLIQR  320 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~-------~~~~~-~~~~i~~~~~~~~-~~~~~~~dli~~  320 (412)
                      |||.|+|||++.|..|++.+|||||||++|||+.|+.||.-       .+.++ +++-|+......+ ..+-.+..++..
T Consensus       413 gtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiriprslsvkas~vlkg  492 (593)
T KOG0695|consen  413 GTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPRSLSVKASHVLKG  492 (593)
T ss_pred             CCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccceeehhhHHHHHH
Confidence            99999999999999999999999999999999999999953       23333 4455555554444 345677889999


Q ss_pred             hhhhCCCccCCCCC--ChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          321 LLEKDPVKRLGYLR--GACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       321 ~L~~dP~~R~~~~~--~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      .|++||.+|+++..  +..+++.|+||+.++|+.+.. .+.|||.|..+++
T Consensus       493 flnkdp~erlgc~~~~g~~dik~h~ffr~idwd~leqk~v~ppf~p~i~~d  543 (593)
T KOG0695|consen  493 FLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQVLPPFQPQITDD  543 (593)
T ss_pred             hhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHhhcccCCCCCCccccc
Confidence            99999999999853  578999999999999997755 6789999987654

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=1.5e-50  Score=394.36  Aligned_cols=274  Identities=34%  Similarity=0.672  Sum_probs=223.2

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ++||+|+||+||+|+++.++.    .||+|++++..... ......+.+|+.+++.+ +||||++++++|.+++.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----~~aiK~i~~~~~~~-~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~   75 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRR----IYAMKVIKKELVND-DEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVI   75 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEE
Confidence            479999999999999887554    49999998765432 33455677899999999 6999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++...      
T Consensus        76 e~~~~g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~------  147 (329)
T cd05588          76 EFVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGI------  147 (329)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccc------
Confidence            999999997766543  459999999999999999999999999999999999999999999999999986421      


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                               .......+.+||+.|+|||++.+
T Consensus       148 ---------------------------------------------------------~~~~~~~~~~gt~~y~aPE~~~~  170 (329)
T cd05588         148 ---------------------------------------------------------RPGDTTSTFCGTPNYIAPEILRG  170 (329)
T ss_pred             ---------------------------------------------------------cCCCccccccCCccccCHHHHcC
Confidence                                                                     01122335689999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCC---------CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGK---------NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~---------~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ..++.++|+|||||++|+|++|+.||...         ........+.......+ ..+.++.++|.+||+.||.+|++.
T Consensus       171 ~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~  250 (329)
T cd05588         171 EDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGC  250 (329)
T ss_pred             CCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            99999999999999999999999999632         11223444444444433 467899999999999999999974


Q ss_pred             C--CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          333 L--RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       333 ~--~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      .  .+++++++||||..++|..... ...|++.|....
T Consensus       251 ~~~~~~~~i~~hp~~~~~~~~~~~~~~~~~~~~~~~~~  288 (329)
T cd05588         251 HPQTGFRDIKSHPFFRNIDWDLLEQKQVLPPYKPNIES  288 (329)
T ss_pred             CCCCCHHHHhcCCCCCCCCHHHHHhCCCCCCccccCCC
Confidence            3  3589999999999999986654 345566665443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.7e-50  Score=391.88  Aligned_cols=271  Identities=36%  Similarity=0.743  Sum_probs=225.0

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ++||+|+||+||+|++..++.    .||||++++...... ........|..++..+ +||||+++++++..++.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~   75 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNE----FFAIKALKKDVVLED-DDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEHHHhhhh-hhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEE
Confidence            479999999999999887554    499999987653222 2333445577777765 7999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~gg~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~-----  148 (316)
T cd05592          76 EYLNGGDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMN-----  148 (316)
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCC-----
Confidence            999999998776543  3599999999999999999999999999999999999999999999999999864311     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (316)
T cd05592         149 ----------------------------------------------------------GEGKASTFCGTPDYIAPEILKG  170 (316)
T ss_pred             ----------------------------------------------------------CCCccccccCCccccCHHHHcC
Confidence                                                                      1122335679999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++.++|||||||++|+|++|..||.+.+..+.+..+....+.++. .++++.+||.+||..||.+|++   ...+++.
T Consensus       171 ~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~---~~~~l~~  247 (316)
T cd05592         171 QKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWISKEAKDCLSKLFERDPTKRLG---VDGDIRQ  247 (316)
T ss_pred             CCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCC---ChHHHHc
Confidence            88999999999999999999999999999988888887766555443 5789999999999999999995   3568999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      |+||+.++|..+.. ...|++.|....
T Consensus       248 h~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (316)
T cd05592         248 HPFFRGIDWERLEKREIPPPFKPKVKS  274 (316)
T ss_pred             CcccCCCCHHHHHhCCCCCCcCCCCCC
Confidence            99999999986654 345666665433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=7e-51  Score=395.95  Aligned_cols=274  Identities=38%  Similarity=0.691  Sum_probs=228.6

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||+||+|+++.++.    .||+|++++...... .......+|+++++.++||||+++++++.+++.+|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----~~a~K~~~~~~~~~~-~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E   75 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGR----YYAMKILKKEVIVAK-DEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVME   75 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----EEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEe
Confidence            479999999999999877554    499999987654332 334556679999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      ||.||+|..++...  ..+++..++.++.||+.||.|||+ +||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 ~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~-----  148 (325)
T cd05594          76 YANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK-----  148 (325)
T ss_pred             CCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCC-----
Confidence            99999997766543  359999999999999999999998 7999999999999999999999999999864311     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (325)
T cd05594         149 ----------------------------------------------------------DGATMKTFCGTPEYLAPEVLED  170 (325)
T ss_pred             ----------------------------------------------------------CCcccccccCCcccCCHHHHcc
Confidence                                                                      1111234579999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CChhhhh
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RGACEIK  340 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~~~e~l  340 (412)
                      ..++.++|||||||++|+|++|..||.+.+.......+......++ ..++++.+||.+||++||++|++.. .++.+++
T Consensus       171 ~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il  250 (325)
T cd05594         171 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIM  250 (325)
T ss_pred             CCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHh
Confidence            8999999999999999999999999999888888777776555544 4678999999999999999998542 3799999


Q ss_pred             cCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          341 EHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       341 ~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      +|+||.++.|..... ...+|+.+....
T Consensus       251 ~h~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (325)
T cd05594         251 QHKFFAGIVWQDVYEKKLVPPFKPQVTS  278 (325)
T ss_pred             cCCCcCCCCHHHHHhCCCCCCcCCcCCC
Confidence            999999999985543 345666655443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1.2e-50  Score=394.23  Aligned_cols=274  Identities=38%  Similarity=0.670  Sum_probs=226.9

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHH-HHhhcCCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-VLSRLSHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~-il~~l~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||+|++.+...... .....+.+|.. +++.++||||+++++++..++.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~~-~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~   75 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGK----CYAVKVLQKKIVLNR-KEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVL   75 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCC----EEEEEEEEHHHhhhh-hHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEE
Confidence            479999999999999877544    499999977644322 22334444554 567789999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~-----  148 (325)
T cd05604          76 DFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIA-----  148 (325)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCC-----
Confidence            999999997666543  4599999999999999999999999999999999999999999999999999864210     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (325)
T cd05604         149 ----------------------------------------------------------QSDTTTTFCGTPEYLAPEVIRK  170 (325)
T ss_pred             ----------------------------------------------------------CCCCcccccCChhhCCHHHHcC
Confidence                                                                      1112235679999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++.++|||||||++|+|++|.+||.+.+..+.+.++...... .+..+..+.++|.+||+.||.+|++...+..++++
T Consensus       171 ~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~  250 (325)
T cd05604         171 QPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQE  250 (325)
T ss_pred             CCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhc
Confidence            99999999999999999999999999998888888887765433 34577899999999999999999987777889999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      ||||.+++|..+.. ...+|+.|....
T Consensus       251 h~~f~~~~~~~~~~~~~~~~~~~~~~~  277 (325)
T cd05604         251 HPFFESLSWTDLEQKKIPPPFNPNVEG  277 (325)
T ss_pred             CCCcCCCCHHHHHhCCCCCCcCCcCCC
Confidence            99999999976654 345566665443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=2.3e-50  Score=399.31  Aligned_cols=283  Identities=29%  Similarity=0.551  Sum_probs=234.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||+||+|+++.++..    ||+|++.+..... ......+.+|+.+++.++||||++++++
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~----~aiK~~~~~~~~~-~~~~~~~~~e~~il~~~~h~~iv~~~~~  111 (370)
T cd05596          37 KLRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQV----YAMKLLSKFEMIK-RSDSAFFWEERDIMAHANSEWIVQLHYA  111 (370)
T ss_pred             cCCCCHHHcEEEEEEeeCCCEEEEEEEECCCCCE----EEEEEEEHHHhhh-hhhHHHHHHHHHHHHhCCCCCcceEEEE
Confidence            4567789999999999999999999999875544    9999997654422 2234456779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+|||||.||+|..++...   .+++..+..++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus       112 ~~~~~~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~  188 (370)
T cd05596         112 FQDDKYLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGT  188 (370)
T ss_pred             EecCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccc
Confidence            99999999999999999998877542   489999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.....                                                              ........+||
T Consensus       189 ~~~~~~~--------------------------------------------------------------~~~~~~~~~gt  206 (370)
T cd05596         189 CMKMDAN--------------------------------------------------------------GMVRCDTAVGT  206 (370)
T ss_pred             eeeccCC--------------------------------------------------------------CcccCCCCCCC
Confidence            8754210                                                              00112356799


Q ss_pred             CCCccceeecCC----CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhh
Q 042539          252 EEYVSPEVVRGD----GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       252 ~~Y~APE~l~~~----~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L  322 (412)
                      +.|+|||++.+.    .++.++|||||||++|||++|.+||.+.+....+.++....     +.....+.++.+||.+||
T Consensus       207 ~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  286 (370)
T cd05596         207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFL  286 (370)
T ss_pred             cCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHc
Confidence            999999998764    36889999999999999999999999998888888887543     222346899999999999


Q ss_pred             hhCCCc--cCCCCCChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          323 EKDPVK--RLGYLRGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       323 ~~dP~~--R~~~~~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      +.+|.+  |+    +++++++||||++.+|..... ...+|+.|.....
T Consensus       287 ~~~p~r~~R~----s~~ell~h~~~~~~~~~~~~~~~~~~~~~p~~~~~  331 (370)
T cd05596         287 TDREVRLGRN----GVDEIKSHPFFKNDQWTFDNIRETVAPVVPELSSD  331 (370)
T ss_pred             cChhhccCCC----CHHHHhcCcccCCCChhhHHhcCCCcCccCcCCCc
Confidence            999987  87    699999999999998874432 3346677765443

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=3.7e-50  Score=389.46  Aligned_cols=271  Identities=35%  Similarity=0.713  Sum_probs=225.5

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ++||+|+||.||+|+++.++.    .||+|++++...... ........|+.++..+ +||||+++++++.+++.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~----~~avK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   75 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGE----YFAVKALKKDVVLID-DDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEHHHhhhc-chHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEE
Confidence            479999999999999987554    499999987643222 2334556688888765 7999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  ..+++.++..++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----  148 (316)
T cd05620          76 EFLNGGDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVF-----  148 (316)
T ss_pred             CCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeeccc-----
Confidence            999999998776543  4589999999999999999999999999999999999999999999999999863210     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (316)
T cd05620         149 ----------------------------------------------------------GDNRASTFCGTPDYIAPEILQG  170 (316)
T ss_pred             ----------------------------------------------------------CCCceeccCCCcCccCHHHHcC
Confidence                                                                      1112235679999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++.++|||||||++|+|++|..||.+.+..+....+....+.++. .+.++++||.+||+.||++|++   .++++++
T Consensus       171 ~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~---~~~~~~~  247 (316)
T cd05620         171 LKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFERDPTRRLG---VVGNIRG  247 (316)
T ss_pred             CCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHccCCHHHcCC---ChHHHHc
Confidence            99999999999999999999999999999888888887766655544 6789999999999999999995   3578999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      ||||++++|..+.. ...+|+.|....
T Consensus       248 h~~f~~~~~~~~~~~~~~~~~~~~~~~  274 (316)
T cd05620         248 HPFFKTINWTALEKRELDPPFKPKVKS  274 (316)
T ss_pred             CCCcCCCCHHHHHhCCCCCCcCCCCCC
Confidence            99999999986543 345666665443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.5e-50  Score=398.97  Aligned_cols=282  Identities=29%  Similarity=0.565  Sum_probs=230.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||.||+|+++.++..    ||+|++.+..... ......+.+|+.+++.++||||++++++
T Consensus        37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~----~aiK~~~~~~~~~-~~~~~~~~~e~~i~~~~~hp~iv~~~~~  111 (370)
T cd05621          37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKV----YAMKLLSKFEMIK-RSDSAFFWEERDIMAFANSPWVVQLFCA  111 (370)
T ss_pred             hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCE----EEEEEEEHHHhhh-hhhHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            3456778999999999999999999999875544    9999997654322 2334557779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+|||||.||+|..++...   .+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus       112 ~~~~~~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~  188 (370)
T cd05621         112 FQDDKYLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGT  188 (370)
T ss_pred             EEcCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEeccc
Confidence            99999999999999999998877543   489999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.....                                                              ......+.+||
T Consensus       189 a~~~~~~--------------------------------------------------------------~~~~~~~~~gt  206 (370)
T cd05621         189 CMKMDET--------------------------------------------------------------GMVRCDTAVGT  206 (370)
T ss_pred             ceecccC--------------------------------------------------------------CceecccCCCC
Confidence            9754210                                                              01122356899


Q ss_pred             CCCccceeecCCC----CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhh
Q 042539          252 EEYVSPEVVRGDG----HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       252 ~~Y~APE~l~~~~----~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L  322 (412)
                      +.|+|||++.+..    ++.++|||||||++|+|++|++||.+.+....+.+++...     +.....+..++++|.+||
T Consensus       207 ~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L  286 (370)
T cd05621         207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFL  286 (370)
T ss_pred             cccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHc
Confidence            9999999997653    6789999999999999999999999998888888887533     222345789999999999


Q ss_pred             hhCCCc--cCCCCCChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          323 EKDPVK--RLGYLRGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       323 ~~dP~~--R~~~~~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      ..++.+  |+    +++++++||||++..|+.... ...+|+.|....
T Consensus       287 ~~~~~r~~R~----~~~e~l~hp~~~~~~~~~~~~~~~~~~~~p~~~~  330 (370)
T cd05621         287 TDREVRLGRN----GVEEIKQHPFFKNDQWNWDNIRETAAPVVPELSS  330 (370)
T ss_pred             cCchhccCCC----CHHHHhcCcccCCCCcChHhcCCCCCCcCCCCCC
Confidence            844433  55    799999999999977753322 345667666543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=6.1e-50  Score=389.14  Aligned_cols=276  Identities=33%  Similarity=0.648  Sum_probs=232.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~   97 (412)
                      +|++++.||+|+||+||+|+++.++.    .||||++.+..... ......+..|+.++..+. |++|+++++++++.+.
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~   75 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDE----LYAIKILKKDVVIQ-DDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDR   75 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhccCCCchhheeeEEecCCE
Confidence            58899999999999999999887554    49999998764422 233456667999998886 5788899999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...  +.+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus        76 ~~lv~Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~  153 (323)
T cd05615          76 LYFVMEYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMV  153 (323)
T ss_pred             EEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCC
Confidence            99999999999998776544  3599999999999999999999999999999999999999999999999999864310


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ........+||+.|+||
T Consensus       154 ---------------------------------------------------------------~~~~~~~~~gt~~y~aP  170 (323)
T cd05615         154 ---------------------------------------------------------------DGVTTRTFCGTPDYIAP  170 (323)
T ss_pred             ---------------------------------------------------------------CCccccCccCCccccCH
Confidence                                                                           11122355799999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~  335 (412)
                      |++.+..++.++|||||||++|+|++|++||.+.+.......+......++ ..+.++.++|.+||.+||.+|++.. ..
T Consensus       171 E~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~  250 (323)
T cd05615         171 EIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEG  250 (323)
T ss_pred             HHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHhhCCCCCCCC
Confidence            999998899999999999999999999999999988888888877665543 4678999999999999999999753 24


Q ss_pred             hhhhhcCCCCCCCCchhhcc-cCCCCCCCC
Q 042539          336 ACEIKEHVFFKGVRWDLLTD-VLRPPFIPS  364 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~  364 (412)
                      .+++++|+||++++|..+.. ...+|+.|.
T Consensus       251 ~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~  280 (323)
T cd05615         251 ERDIREHAFFRRIDWDKLENREIQPPFKPK  280 (323)
T ss_pred             HHHHhcCcccCCCCHHHHhcCCCCcCccCc
Confidence            68999999999999987755 346677664

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.6e-50  Score=392.11  Aligned_cols=275  Identities=40%  Similarity=0.745  Sum_probs=228.5

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEe
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ++.||+|+||.||++++.. +..+++.||+|++++.....  .....+.+|++++++++||||+++++++.+++.+|+||
T Consensus         1 l~~lg~G~~g~Vy~~~~~~-~~~~~~~~aiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   77 (318)
T cd05582           1 LKVLGQGSFGKVFLVRKIT-GPDAGQLYAMKVLKKATLKV--RDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLIL   77 (318)
T ss_pred             CceeeeCCCEEEEEEEEec-cCCCCCEEEEEEEEHHHhhh--hhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEE
Confidence            4689999999999998742 22356679999998765422  23445667999999999999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  ..+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        78 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~-----  150 (318)
T cd05582          78 DFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID-----  150 (318)
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCC-----
Confidence            999999998777543  3589999999999999999999999999999999999999999999999999864321     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       151 ----------------------------------------------------------~~~~~~~~~g~~~y~aPE~~~~  172 (318)
T cd05582         151 ----------------------------------------------------------HEKKAYSFCGTVEYMAPEVVNR  172 (318)
T ss_pred             ----------------------------------------------------------CCCceecccCChhhcCHHHHcC
Confidence                                                                      1112235679999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCC-Chhhhh
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLR-GACEIK  340 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~-~~~e~l  340 (412)
                      ..++.++|||||||++|+|++|+.||.+.+..+....+.......+ ..++++.+||++||+.||++|++... .+++++
T Consensus       173 ~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~  252 (318)
T cd05582         173 RGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIK  252 (318)
T ss_pred             CCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHh
Confidence            8899999999999999999999999999888888887776555443 46789999999999999999996422 278899


Q ss_pred             cCCCCCCCCchhhcc-cCCCCCCCCC
Q 042539          341 EHVFFKGVRWDLLTD-VLRPPFIPSR  365 (412)
Q Consensus       341 ~h~ff~~~~~~~~~~-~~~pp~~p~~  365 (412)
                      .|+||..++|..+.. ...|++.+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (318)
T cd05582         253 RHPFFSTIDWNKLYRREIKPPFKPAV  278 (318)
T ss_pred             CCCCcCCCCHHHHHhcCCCCCcCCCC
Confidence            999999999985543 3455665543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-51  Score=395.76  Aligned_cols=260  Identities=28%  Similarity=0.453  Sum_probs=234.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ..=|.+.+.||+|.|++|-+|++.-++..    ||||+|.|..+..-  ....+.+|++.|+.++|||||+||++..++.
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGek----VAVKviDKTKlD~~--st~hlfqEVRCMKLVQHpNiVRLYEViDTQT   90 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEK----VAVKVIDKTKLDTL--STGHLFQEVRCMKLVQHPNIVRLYEVIDTQT   90 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccce----eEEEEecccccchh--hhhHHHHHHHHHHHhcCcCeeeeeehhcccc
Confidence            34588889999999999999988775554    99999999876432  3456777999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEccccccchh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDFDLSRNL  175 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DFGla~~~  175 (412)
                      .+|||+|+=.||||++++-.... .+.|+.++.|++||+.|+.|+|+..+|||||||+|+++.+. |-|||+|||++..+
T Consensus        91 KlyLiLELGD~GDl~DyImKHe~-Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf  169 (864)
T KOG4717|consen   91 KLYLILELGDGGDLFDYIMKHEE-GLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKF  169 (864)
T ss_pred             eEEEEEEecCCchHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccC
Confidence            99999999999999999877654 49999999999999999999999999999999999988765 99999999998544


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                                                                                      ..++..+++||+..|-
T Consensus       170 ----------------------------------------------------------------~PG~kL~TsCGSLAYS  185 (864)
T KOG4717|consen  170 ----------------------------------------------------------------QPGKKLTTSCGSLAYS  185 (864)
T ss_pred             ----------------------------------------------------------------CCcchhhcccchhhcc
Confidence                                                                            4566778999999999


Q ss_pred             cceeecCCCCC-chhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCC
Q 042539          256 SPEVVRGDGHE-FAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       256 APE~l~~~~~~-~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |||++.|..|+ .++||||||||||.|++|++||...+..+++..|+...+..+. .+++++|||.+||+.||.+|.   
T Consensus       186 APEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPshvS~eCrdLI~sMLvRdPkkRA---  262 (864)
T KOG4717|consen  186 APEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLVRDPKKRA---  262 (864)
T ss_pred             CchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchhhhHHHHHHHHHHHhcCchhhc---
Confidence            99999999994 7899999999999999999999999999999999998887776 589999999999999999998   


Q ss_pred             CChhhhhcCCCCCCCCch
Q 042539          334 RGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~~~~  351 (412)
                       ++++|..|+|+++++-.
T Consensus       263 -slEeI~s~~Wlq~~D~~  279 (864)
T KOG4717|consen  263 -SLEEIVSTSWLQAGDRG  279 (864)
T ss_pred             -cHHHHhccccccCCCCC
Confidence             69999999999998743

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-50  Score=397.01  Aligned_cols=259  Identities=32%  Similarity=0.546  Sum_probs=231.5

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~   92 (412)
                      .-..+.|++.+.||+|.||.||+|+++.++..    ||+|++.|....... ....+.+|+++|+++. |||||.++++|
T Consensus        31 ~~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~----~A~K~i~k~~~~~~~-~~~~v~~Ev~il~~l~~hpniv~l~~~~  105 (382)
T KOG0032|consen   31 EDIKEKYELGRELGRGQFGVVYLCREKSTGKE----VACKVIPKRKLRGKE-DREDVRREVAILQQLSGHPNIVQLKDAF  105 (382)
T ss_pred             ccccccEEehhhhCCCCceEEEEEEecCCCce----eEEEEeehhhccccc-cHHHHHHHHHHHHhccCCCCEEEEEEEE
Confidence            34456899999999999999999999986554    999999888765432 4556778999999998 99999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC----CCEEEcc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS----GHVTLTD  168 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~----g~vkL~D  168 (412)
                      ++...+++|||+|.||+|.+.+...   .++|..+..++.|++.|+.|||+.||+||||||+|+|+...    +.+|++|
T Consensus       106 e~~~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~D  182 (382)
T KOG0032|consen  106 EDPDSVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLID  182 (382)
T ss_pred             EcCCeEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEee
Confidence            9999999999999999998887766   29999999999999999999999999999999999999754    4799999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+|....                                                                .+......
T Consensus       183 FGla~~~~----------------------------------------------------------------~~~~~~~~  198 (382)
T KOG0032|consen  183 FGLAKFIK----------------------------------------------------------------PGERLHTI  198 (382)
T ss_pred             CCCceEcc----------------------------------------------------------------CCceEeee
Confidence            99998752                                                                23455688


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-----CCCCCChHHHHHHHHhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-----EFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-----~~~~~~~~~~dli~~~L~  323 (412)
                      |||+.|+|||++.+.+|+..+||||+||++|.|++|.+||.+.+....+.++..+..     .++.++..++|||++||.
T Consensus       199 ~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~  278 (382)
T KOG0032|consen  199 VGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLE  278 (382)
T ss_pred             cCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999987654     456778999999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      .||.+|+    ++.++|+|||+++.
T Consensus       279 ~dp~~R~----ta~~~L~HpWi~~~  299 (382)
T KOG0032|consen  279 FDPRKRL----TAAQALQHPWIKSI  299 (382)
T ss_pred             cCcccCC----CHHHHhcCccccCC
Confidence            9999999    79999999999875

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-50  Score=394.62  Aligned_cols=271  Identities=37%  Similarity=0.675  Sum_probs=225.2

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc---CCCccceeeeeEEeCCeEEEEe
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL---SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l---~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      ||+|+||+||+|+++.++.    .||+|++.+....... .......|..++..+   .||||+++++++.+.+.+|+||
T Consensus         1 lG~G~~g~Vy~~~~~~~~~----~~avK~~~~~~~~~~~-~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~   75 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRR----IYAMKVLSKKEIVAKK-EVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVT   75 (330)
T ss_pred             CCCCCceEEEEEEECCCCC----EEEEEEEeHHHHhhhh-HHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEE
Confidence            7999999999999887554    4999999776543322 233445577777665   5999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      ||+.||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~-----  148 (330)
T cd05586          76 DYMSGGELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLT-----  148 (330)
T ss_pred             cCCCCChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCC-----
Confidence            999999997776543  4599999999999999999999999999999999999999999999999999864311     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (330)
T cd05586         149 ----------------------------------------------------------DNKTTNTFCGTTEYLAPEVLLD  170 (330)
T ss_pred             ----------------------------------------------------------CCCCccCccCCccccCHHHHcC
Confidence                                                                      1112335689999999999876


Q ss_pred             C-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC--CCChHHHHHHHHhhhhCCCccCCCCCChhhh
Q 042539          263 D-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV--GQRTALTDLIQRLLEKDPVKRLGYLRGACEI  339 (412)
Q Consensus       263 ~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~  339 (412)
                      . .++.++|||||||++|+|++|..||.+.+..+.+.++......++  ..++++.+||.+||..||.+|++...+++++
T Consensus       171 ~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~l  250 (330)
T cd05586         171 EKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVEL  250 (330)
T ss_pred             CCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHH
Confidence            5 478999999999999999999999999888888888876655444  3578999999999999999999877789999


Q ss_pred             hcCCCCCCCCchhhcc-cCCCCCCCCCC
Q 042539          340 KEHVFFKGVRWDLLTD-VLRPPFIPSRE  366 (412)
Q Consensus       340 l~h~ff~~~~~~~~~~-~~~pp~~p~~~  366 (412)
                      ++||||...+|+.+.. ...+|+.|...
T Consensus       251 l~h~~~~~~~~~~~~~~~~~~~~~~~~~  278 (330)
T cd05586         251 KEHPFFADIDWDLLSKKQITPPFKPIVD  278 (330)
T ss_pred             hcCccccCCCHHHHHhCCCCCCccCCCC
Confidence            9999999999986644 34566666544

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5e-51  Score=386.69  Aligned_cols=260  Identities=31%  Similarity=0.506  Sum_probs=214.5

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ..+|...+.||+|+||.||++.++.++..    +|||.+.....   .. .+.+.+|+++|.+++|||||++++.....+
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~----~AvK~v~~~~~---~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~   87 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGEL----MAVKSVELEDS---PT-SESLEREIRILSRLNHPNIVQYYGSSSSRE   87 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcc----eeeeeeecccc---hh-HHHHHHHHHHHHhCCCCCEEeeCCcccccc
Confidence            56799999999999999999999876444    99999866521   11 566778999999999999999999865554


Q ss_pred             --eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CCCEEEccccccc
Q 042539           97 --FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFDLSR  173 (412)
Q Consensus        97 --~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g~vkL~DFGla~  173 (412)
                        .+++.|||+.||+|.+++...++ .|+|..++.|.+||+.||+|||++|||||||||+|||++. +|.+||+|||+++
T Consensus        88 ~~~~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~  166 (313)
T KOG0198|consen   88 NDEYNIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAK  166 (313)
T ss_pred             CeeeEeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccc
Confidence              69999999999999999887665 7999999999999999999999999999999999999999 7999999999998


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                            .........+.||+.
T Consensus       167 ~~~~~------------------------------------------------------------~~~~~~~~~~~Gtp~  186 (313)
T KOG0198|consen  167 KLESK------------------------------------------------------------GTKSDSELSVQGTPN  186 (313)
T ss_pred             ccccc------------------------------------------------------------cccccccccccCCcc
Confidence            65310                                                            011233446789999


Q ss_pred             CccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcCC--CCCC-CCChHHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMKT--PEFV-GQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~~--~~~~-~~~~~~~dli~~~L~~dP~~  328 (412)
                      |||||++.+. ...+++|||||||++.||+||.+||.. ....+.+-.+....  |.++ .+++++++||.+||.+||++
T Consensus       187 ~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~  266 (313)
T KOG0198|consen  187 YMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEK  266 (313)
T ss_pred             ccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCccc
Confidence            9999999962 234599999999999999999999987 34334333343332  3333 46789999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      ||    +|+++|+|||.....
T Consensus       267 Rp----ta~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  267 RP----TAEELLEHPFLKQNS  283 (313)
T ss_pred             Cc----CHHHHhhChhhhccc
Confidence            99    799999999997643

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=4.4e-50  Score=390.96  Aligned_cols=277  Identities=33%  Similarity=0.618  Sum_probs=232.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++.+.||+|+||+||+|+++.++.    .||+|++++.... .......+.+|+.+++.++|+||+++++++.+++.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~-~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~   75 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGD----IYAMKVMKKSVLL-AQETVSFFEEERDILSISNSPWIPQLQYAFQDKDN   75 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCC----EEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCe
Confidence            589999999999999999999887554    4999999876542 23345667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.+..
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~  154 (330)
T cd05601          76 LYLVMEYQPGGDLLSLLNRY-EDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTA  154 (330)
T ss_pred             EEEEECCCCCCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCC
Confidence            99999999999998887654 24599999999999999999999999999999999999999999999999999975421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                              .......+||+.|+||
T Consensus       155 ~~--------------------------------------------------------------~~~~~~~~gt~~y~aP  172 (330)
T cd05601         155 NK--------------------------------------------------------------MVNSKLPVGTPDYIAP  172 (330)
T ss_pred             CC--------------------------------------------------------------ceeeecccCCccccCH
Confidence            10                                                              0111234789999999


Q ss_pred             eeec------CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhhhCC
Q 042539          258 EVVR------GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       258 E~l~------~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      |++.      +..++.++|||||||++|+|++|..||.+.+....+.+++...     +..+..++++.+||++||. ||
T Consensus       173 E~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p  251 (330)
T cd05601         173 EVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQ  251 (330)
T ss_pred             HHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-Ch
Confidence            9987      4457889999999999999999999999988888877776432     2334568899999999997 99


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                      .+|+    +++++++||||..++|..+.. ..|++.|.....
T Consensus       252 ~~R~----t~~~l~~h~~~~~~~~~~~~~-~~~~~~~~~~~~  288 (330)
T cd05601         252 KERL----GYEGLCCHPFFSKIDWNNIRN-SLPPFVPTLKSD  288 (330)
T ss_pred             hhCC----CHHHHhCCCCcCCCCHHHHhh-CCCCccCcCCCc
Confidence            9999    689999999999999987765 345666655443

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.2e-49  Score=386.29  Aligned_cols=274  Identities=36%  Similarity=0.687  Sum_probs=227.3

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||||++++..... ......+.+|+.+++.+ +||||+++++++.+.+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~   75 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDE----LYAVKVLKKDVILQ-DDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVM   75 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEHHHHhh-hhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEE
Confidence            479999999999999877544    49999998765432 23345566799999888 5999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  +.+++.++..++.|++.||.|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~-----  148 (318)
T cd05570          76 EYVNGGDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGIL-----  148 (318)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCc-----
Confidence            999999997766543  3599999999999999999999999999999999999999999999999999864210     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~g~~~y~aPE~~~~  170 (318)
T cd05570         149 ----------------------------------------------------------GGVTTSTFCGTPDYIAPEILSY  170 (318)
T ss_pred             ----------------------------------------------------------CCCcccceecCccccCHHHhcC
Confidence                                                                      1112234579999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CChhhhh
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RGACEIK  340 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~~~e~l  340 (412)
                      ..++.++|+|||||++|+|++|+.||.+.+.......+......++ ..++.+.+||.+||..||.+|++.. ....+++
T Consensus       171 ~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll  250 (318)
T cd05570         171 QPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIK  250 (318)
T ss_pred             CCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHh
Confidence            9999999999999999999999999999888888887776665544 3678999999999999999999521 1139999


Q ss_pred             cCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          341 EHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       341 ~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      +||||+.++|..... ...||+.|....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (318)
T cd05570         251 GHPFFREIDWDKLERKEIKPPFKPKIKG  278 (318)
T ss_pred             cCCCcCCCCHHHHHhCCCCCCcCCCCCC
Confidence            999999999975543 445666665443

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-49  Score=380.09  Aligned_cols=276  Identities=36%  Similarity=0.622  Sum_probs=227.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++.+.||+|+||+||++.+..++.    .||+|++.+..... ......+.+|+.+++.++|+||+++++++.+++.+
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   75 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGK----MYACKKLEKKRIKK-RKGEAMALNEKQILEKVNSRFVVSLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCc----eEEEEEEehhhhhh-hhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeE
Confidence            58999999999999999999876544    49999997655432 22345567799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+|||||.||+|..++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.++|+|||++..... 
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~-  154 (285)
T cd05605          76 CLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE-  154 (285)
T ss_pred             EEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCC-
Confidence            9999999999998777665555699999999999999999999999999999999999999999999999999865311 


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     .......+||+.|+|||
T Consensus       155 ---------------------------------------------------------------~~~~~~~~~~~~y~aPE  171 (285)
T cd05605         155 ---------------------------------------------------------------GETIRGRVGTVGYMAPE  171 (285)
T ss_pred             ---------------------------------------------------------------CCccccccCCCCccCcH
Confidence                                                                           01112447899999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHH----HhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN----VLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~----i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ++.+..++.++||||+||++|+|++|+.||.+.+.......    +......+ ...+..+.+||.+||..||.+|+++.
T Consensus       172 ~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05605         172 VVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCR  251 (285)
T ss_pred             HhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCC
Confidence            99988899999999999999999999999998665433222    22222222 34678999999999999999999652


Q ss_pred             -CChhhhhcCCCCCCCCchhhcc-cCCCCCCC
Q 042539          334 -RGACEIKEHVFFKGVRWDLLTD-VLRPPFIP  363 (412)
Q Consensus       334 -~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p  363 (412)
                       .+++++++|+||...+|+.+.. ...|||.|
T Consensus       252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  283 (285)
T cd05605         252 GEGAEEVKAHPFFRTANFKRLEAGMLEPPFCP  283 (285)
T ss_pred             CCCHHHHhcCcCccCCCHHHHhhCCCCCCCCC
Confidence             2689999999999999987755 34566665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-49  Score=385.46  Aligned_cols=280  Identities=33%  Similarity=0.624  Sum_probs=226.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+++++.++.    .||+|++.+.... .......+.+|+.+++.++|+||+++++++.++++
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQ----VYAMKILNKWEML-KRAETACFREERDVLVNGDRRWITNLHYAFQDENN   75 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCC----EEEEEEEEHHHHh-hhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCe
Confidence            589999999999999999999887554    4999999765432 22344567779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.||+|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||++..+..
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  154 (331)
T cd05597          76 LYLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLA  154 (331)
T ss_pred             EEEEEecCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCC
Confidence            99999999999998887643 34589999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                              ........+||+.|+||
T Consensus       155 ~--------------------------------------------------------------~~~~~~~~~gt~~y~aP  172 (331)
T cd05597         155 D--------------------------------------------------------------GTVQSNVAVGTPDYISP  172 (331)
T ss_pred             C--------------------------------------------------------------CCccccceeccccccCH
Confidence            1                                                              00111234699999999


Q ss_pred             eeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC------CCCCCChHHHHHHHHhhhhCC
Q 042539          258 EVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP------EFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       258 E~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~------~~~~~~~~~~dli~~~L~~dP  326 (412)
                      |++.+     ..++.++|||||||++|+|++|+.||.+.+..+.+..+.....      .....+..+++||++||.. |
T Consensus       173 E~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~-~  251 (331)
T cd05597         173 EILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICS-P  251 (331)
T ss_pred             HHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccC-c
Confidence            99874     3467899999999999999999999999888887777764321      1234678999999999975 3


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                      .+|++- .+++++++||||.+++|...... .+++.|.....
T Consensus       252 ~~r~~r-~~~~~~l~hp~~~~~~~~~~~~~-~~~~~~~~~~~  291 (331)
T cd05597         252 ETRLGR-NGLQDFKDHPFFEGIDWDNIRNS-TAPYVPEVSSP  291 (331)
T ss_pred             ccccCC-CCHHHHhcCCCCCCCCHHHHhhC-CCCccCcCCCc
Confidence            443321 17999999999999999877653 45566655443

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.6e-49  Score=378.17  Aligned_cols=270  Identities=33%  Similarity=0.600  Sum_probs=220.0

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||+|+||+||+|.++.++.    .||+|++.+...... .....+..|+++++.++|+||+++++++..+..+|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~----~~avK~~~~~~~~~~-~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (280)
T cd05608           1 LGKGGFGEVSACQMRATGK----LYACKKLNKKRLKKR-KGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIM   75 (280)
T ss_pred             CCCCCceeEEEEEEccCCc----EEEEEeeeHHHHhhh-HHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCC
Confidence            7999999999999887554    499999976654322 23455677999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          106 PGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       106 ~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      .||+|..++...  ....+++..+..++.||+.||.|||++||+||||||+||+++.+|.+||+|||++..+...     
T Consensus        76 ~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~-----  150 (280)
T cd05608          76 NGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDG-----  150 (280)
T ss_pred             CCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCC-----
Confidence            999998766432  2346899999999999999999999999999999999999999999999999998654210     


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                ........||+.|+|||++.+.
T Consensus       151 ----------------------------------------------------------~~~~~~~~g~~~y~aPE~~~~~  172 (280)
T cd05608         151 ----------------------------------------------------------QSKTKGYAGTPGFMAPELLQGE  172 (280)
T ss_pred             ----------------------------------------------------------CccccccCCCcCccCHHHhcCC
Confidence                                                                      0112245789999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHhhCCCCCCCCCH----HHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCCCC-Chh
Q 042539          264 GHEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLR-GAC  337 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~----~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~~-~~~  337 (412)
                      .++.++|+|||||++|+|++|+.||.....    ......+......+ ...+..+.++|.+||+.||++|+++.. +++
T Consensus       173 ~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~  252 (280)
T cd05608         173 EYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCD  252 (280)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHH
Confidence            999999999999999999999999987542    22333333332222 346789999999999999999998754 799


Q ss_pred             hhhcCCCCCCCCchhhcc-cCCCCCCC
Q 042539          338 EIKEHVFFKGVRWDLLTD-VLRPPFIP  363 (412)
Q Consensus       338 e~l~h~ff~~~~~~~~~~-~~~pp~~p  363 (412)
                      ++++||||++++|..+.. ...+||.|
T Consensus       253 ~~l~h~~~~~~~~~~~~~~~~~~~~~~  279 (280)
T cd05608         253 GLRTHPLFRDLNWRQLEAGMLPPPFVP  279 (280)
T ss_pred             HHhcChhhhcCCHhHHhhccCCCCCCC
Confidence            999999999999986544 34455554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=3.1e-49  Score=385.20  Aligned_cols=273  Identities=35%  Similarity=0.680  Sum_probs=221.4

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||+|++++..... ......+.+|+.++.++ +||||+++++++.+++.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   75 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTER----IYAMKVVKKELVND-DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVI   75 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEhhHhcc-hhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEE
Confidence            479999999999999887554    49999998765432 23445677799998887 6999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 E~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~-----  148 (329)
T cd05618          76 EYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-----  148 (329)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccC-----
Confidence            999999997766543  4599999999999999999999999999999999999999999999999999864310     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                .......++||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (329)
T cd05618         149 ----------------------------------------------------------PGDTTSTFCGTPNYIAPEILRG  170 (329)
T ss_pred             ----------------------------------------------------------CCCccccccCCccccCHHHHcC
Confidence                                                                      1112235689999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCC---------CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGK---------NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~---------~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ..++.++|||||||++|+|++|+.||...         ........+......++ ..+..+.+||.+||+.||.+|++.
T Consensus       171 ~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         171 EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence            99999999999999999999999999521         12223444444444433 467889999999999999999964


Q ss_pred             C--CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCC
Q 042539          333 L--RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSRE  366 (412)
Q Consensus       333 ~--~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~  366 (412)
                      .  .+..++++||||++++|..... ...|++.|...
T Consensus       251 ~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~~~~~~~~  287 (329)
T cd05618         251 HPQTGFADIQGHPFFRNVDWDLMEQKQVVPPFKPNIS  287 (329)
T ss_pred             CCCCCHHHHhcCCCCCCCCHHHHHcCCCCcCccCCCC
Confidence            2  2468999999999999986654 44666666543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-51  Score=397.05  Aligned_cols=252  Identities=29%  Similarity=0.443  Sum_probs=219.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ..|....+||+|+-|.||.|+...++..    ||||.+.....    .....+.+|+.+|+..+|+|||.+++.|..++.
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~----VaiK~m~l~~Q----~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~de  344 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQE----VAIKRMDLRKQ----PKKELLLNEILVMRDLHHPNIVNFLDSYLVGDE  344 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCce----EEEEEEEeccC----CchhhhHHHHHHHHhccchHHHHHHHHhcccce
Confidence            4678889999999999999998886555    99999977543    334567779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||++||+|.+.+...   .++|.++..++++++.||+|||.+||+|||||.+|||++.+|.+||+|||+|..+..
T Consensus       345 LWVVMEym~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~  421 (550)
T KOG0578|consen  345 LWVVMEYMEGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISE  421 (550)
T ss_pred             eEEEEeecCCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeecccc
Confidence            99999999999998877643   399999999999999999999999999999999999999999999999999987631


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ......+.+|||.||||
T Consensus       422 ---------------------------------------------------------------~~~KR~TmVGTPYWMAP  438 (550)
T KOG0578|consen  422 ---------------------------------------------------------------EQSKRSTMVGTPYWMAP  438 (550)
T ss_pred             ---------------------------------------------------------------ccCccccccCCCCccch
Confidence                                                                           22245678999999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc-CCCCC---CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-KTPEF---VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~-~~~~~---~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |++....|+.++||||||++++||+-|.+||-..+.-..+..|.. +.+.+   ...++.++||+++||+.|+.+|+   
T Consensus       439 EVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~Ra---  515 (550)
T KOG0578|consen  439 EVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRA---  515 (550)
T ss_pred             hhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCC---
Confidence            999999999999999999999999999999987665555555554 34443   34689999999999999999999   


Q ss_pred             CChhhhhcCCCCCC
Q 042539          334 RGACEIKEHVFFKG  347 (412)
Q Consensus       334 ~~~~e~l~h~ff~~  347 (412)
                       +|.|||+||||+-
T Consensus       516 -sA~eLL~HpFl~~  528 (550)
T KOG0578|consen  516 -SAKELLEHPFLKM  528 (550)
T ss_pred             -CHHHHhcChhhhh
Confidence             6999999999964

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=4.8e-49  Score=384.21  Aligned_cols=278  Identities=33%  Similarity=0.604  Sum_probs=226.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|+++++||+|+||+||+++++.++.    .||+|++.+.... .......+..|+.++..++|+||+++++++.+.+.
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~----~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADK----VFAMKILNKWEML-KRAETACFREERDVLVNGDNQWITTLHYAFQDENN   75 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCC----EEEEEEEeHHHHH-HhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCE
Confidence            589999999999999999999877544    4999999765432 22334456779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.||+|..++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.+..
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~  154 (332)
T cd05623          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME  154 (332)
T ss_pred             EEEEEeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheeccc
Confidence            999999999999988876532 3589999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                              ........+||+.|+||
T Consensus       155 ~--------------------------------------------------------------~~~~~~~~~gt~~y~aP  172 (332)
T cd05623         155 D--------------------------------------------------------------GTVQSSVAVGTPDYISP  172 (332)
T ss_pred             C--------------------------------------------------------------CcceecccccCccccCH
Confidence            0                                                              00112245799999999


Q ss_pred             eeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC------CCCCChHHHHHHHHhhhhCC
Q 042539          258 EVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE------FVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       258 E~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~------~~~~~~~~~dli~~~L~~dP  326 (412)
                      |++.+     ..++.++|||||||++|||++|+.||.+.+..+.+.++......      ....++++++||.+||..++
T Consensus       173 E~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~  252 (332)
T cd05623         173 EILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSRE  252 (332)
T ss_pred             HHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChh
Confidence            99863     35788999999999999999999999999888888888754321      13468899999999997654


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCC
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSRE  366 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~  366 (412)
                      .+ ++- .+++++++||||.+++|+.+.. ..+|++|...
T Consensus       253 ~r-~~r-~~~~~~~~h~~f~~~~~~~~~~-~~~~~~~~~~  289 (332)
T cd05623         253 HR-LGQ-NGIEDFKQHPFFTGIDWDNIRN-CEAPYIPEVS  289 (332)
T ss_pred             hh-cCC-CCHHHHhCCCCcCCCCHHHHhh-CCCCccCCCC
Confidence            43 321 2799999999999999998764 4555665543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=4.5e-49  Score=390.19  Aligned_cols=284  Identities=31%  Similarity=0.572  Sum_probs=230.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||.||+|+++.++.    .||+|++.+..... ......+.+|+.+++.++||||++++++
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~----~~aiK~i~~~~~~~-~~~~~~~~~e~~i~~~~~hp~iv~~~~~  111 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRK----VYAMKLLSKFEMIK-RSDSAFFWEERDIMAFANSPWVVQLFYA  111 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCc----EEEEEEEEHHHhhh-hHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            356777999999999999999999999987554    49999997654322 2334556779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+|||||.||+|..++...   .+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus       112 ~~~~~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~  188 (371)
T cd05622         112 FQDDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGT  188 (371)
T ss_pred             EEcCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCc
Confidence            99999999999999999998877543   489999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.....                                                              ......+.+||
T Consensus       189 a~~~~~~--------------------------------------------------------------~~~~~~~~~gt  206 (371)
T cd05622         189 CMKMNKE--------------------------------------------------------------GMVRCDTAVGT  206 (371)
T ss_pred             eeEcCcC--------------------------------------------------------------CcccccCcccC
Confidence            8754210                                                              00112356899


Q ss_pred             CCCccceeecCCC----CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHHhh
Q 042539          252 EEYVSPEVVRGDG----HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       252 ~~Y~APE~l~~~~----~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L  322 (412)
                      +.|+|||++.+..    ++.++|||||||++|||++|.+||.+.+....+.+++...     +.....+..+++||.+||
T Consensus       207 ~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  286 (371)
T cd05622         207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFL  286 (371)
T ss_pred             ccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHc
Confidence            9999999997643    6889999999999999999999999999888888887543     223357889999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCC
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREE  367 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~  367 (412)
                      . +|..|++- .+++++++|+||++..|.... ....+|+.|....
T Consensus       287 ~-~~~~r~~r-~~~~ei~~h~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (371)
T cd05622         287 T-DREVRLGR-NGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSS  330 (371)
T ss_pred             C-ChhhhcCC-CCHHHHhcCcccCCCChhHHhcCCCCCCCCCCCCC
Confidence            8 66665432 279999999999997664322 2234566665433

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.1e-49  Score=383.09  Aligned_cols=272  Identities=35%  Similarity=0.702  Sum_probs=225.1

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||||++++...... ........|..++..+ +||||+++++++.+++.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   75 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQ----FFAIKALKKDVVLMD-DDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVM   75 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCC----EEEEEEEEHHHhhhc-chHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEE
Confidence            479999999999999887554    499999977643222 2234455688888765 7999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      ||+.||+|..++...  ..+++.++..++.|++.||.|||++||+||||||+|||++.++.+||+|||+++....     
T Consensus        76 ey~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~-----  148 (316)
T cd05619          76 EYLNGGDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENML-----  148 (316)
T ss_pred             eCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCC-----
Confidence            999999998777543  3589999999999999999999999999999999999999999999999999864210     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ........+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (316)
T cd05619         149 ----------------------------------------------------------GDAKTCTFCGTPDYIAPEILLG  170 (316)
T ss_pred             ----------------------------------------------------------CCCceeeecCCccccCHHHHcC
Confidence                                                                      0111234579999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++.++|||||||++|+|++|..||.+.+..+.+..+....+.++ ..+.++++||.+||+.||.+|++   ..++++.
T Consensus       171 ~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~---~~~~l~~  247 (316)
T cd05619         171 QKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPRWLTREAKDILVKLFVREPERRLG---VKGDIRQ  247 (316)
T ss_pred             CCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhccCHhhcCC---ChHHHHc
Confidence            8999999999999999999999999999888888877766555444 36789999999999999999995   2359999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      ||||+.++|..+.. ...+|+.|.....
T Consensus       248 h~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (316)
T cd05619         248 HPFFREIDWSALEEREIEPPFKPKVKSA  275 (316)
T ss_pred             CcccCCCCHHHHHhCCCCCCcCCCCCCc
Confidence            99999999986644 4567777665433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=4.9e-49  Score=384.03  Aligned_cols=279  Identities=31%  Similarity=0.608  Sum_probs=228.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+++++.++.    .||+|++.+..... ......+..|+.++..++|+||+++++++.+++.
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~   75 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTER----IYAMKILNKWEMLK-RAETACFREERNVLVNGDCQWITTLHYAFQDENY   75 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCC----EEEEEEEeHHHHHh-hHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE
Confidence            589999999999999999999877544    49999997654322 2334556779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++.... ..+++..++.++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++.+..
T Consensus        76 ~~lv~Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  154 (331)
T cd05624          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ  154 (331)
T ss_pred             EEEEEeCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccC
Confidence            999999999999998876532 3589999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                              ........+||+.|+||
T Consensus       155 ~--------------------------------------------------------------~~~~~~~~~gt~~y~aP  172 (331)
T cd05624         155 D--------------------------------------------------------------GTVQSSVAVGTPDYISP  172 (331)
T ss_pred             C--------------------------------------------------------------CceeeccccCCcccCCH
Confidence            1                                                              00111235799999999


Q ss_pred             eeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC--C----CCCCChHHHHHHHHhhhhCC
Q 042539          258 EVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP--E----FVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       258 E~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~--~----~~~~~~~~~dli~~~L~~dP  326 (412)
                      |++.+     ..++.++|||||||++|+|++|+.||.+.+..+.+..+.....  .    ....+.++++||.+||..++
T Consensus       173 E~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~  252 (331)
T cd05624         173 EILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRE  252 (331)
T ss_pred             HHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCch
Confidence            99876     4578899999999999999999999999888888877765331  1    23457899999999998655


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCC
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREE  367 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~  367 (412)
                       +|++. .+++++++|+||++++|..+.. ..+|++|....
T Consensus       253 -~~~~~-~~~~~~~~h~~f~~~~~~~~~~-~~~~~~p~~~~  290 (331)
T cd05624         253 -RRLGQ-NGIEDFKKHAFFEGIDWENIRN-LEAPYIPDVSS  290 (331)
T ss_pred             -hhcCC-CCHHHHhcCCCcCCCCHHHHhh-CCCCccCCCCC
Confidence             44431 3799999999999999998754 44667766444

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.2e-49  Score=383.86  Aligned_cols=274  Identities=36%  Similarity=0.675  Sum_probs=223.7

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||+||+|+++.++.    .||+|++++..... ......+.+|+.++.++ +|+||+++++++.+.+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~   75 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQ----IYAMKVVKKELVHD-DEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVI   75 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEE
Confidence            479999999999999887554    49999998765432 33456677899999998 5999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      |||.||+|..++...  +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....     
T Consensus        76 e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~-----  148 (327)
T cd05617          76 EYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLG-----  148 (327)
T ss_pred             eCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccC-----
Confidence            999999997766543  3599999999999999999999999999999999999999999999999999864210     


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                ......+.+||+.|+|||++.+
T Consensus       149 ----------------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~  170 (327)
T cd05617         149 ----------------------------------------------------------PGDTTSTFCGTPNYIAPEILRG  170 (327)
T ss_pred             ----------------------------------------------------------CCCceecccCCcccCCHHHHCC
Confidence                                                                      1112235689999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHhhCCCCCCCC-------CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-
Q 042539          263 DGHEFAVDWWALGILTYEMLYGTTPFRGK-------NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-  333 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~-------~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-  333 (412)
                      ..++.++|||||||++|+|++|..||...       ........+......++ ..+..+.++|.+||+.||.+|++.. 
T Consensus       171 ~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~  250 (327)
T cd05617         171 EEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQP  250 (327)
T ss_pred             CCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCC
Confidence            99999999999999999999999999642       22334444444433333 4578899999999999999999642 


Q ss_pred             -CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          334 -RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       334 -~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                       .+.+++++|+||++++|+.+.. ...++|.|....
T Consensus       251 ~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~~~~  286 (327)
T cd05617         251 QTGFSDIKSHTFFRSIDWDLLEKKQVTPPFKPQITD  286 (327)
T ss_pred             CCCHHHHHcCCCCCCCCHHHHHhCCCCCCccCCCCC
Confidence             3578999999999999997765 445667766543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.1e-48  Score=371.76  Aligned_cols=269  Identities=32%  Similarity=0.584  Sum_probs=218.5

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||+|+||+||+|+++.++.    .||+|++.+..+... .....+..|+++++.++||||++++++++++..+|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~----~~a~K~~~~~~~~~~-~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGK----MYACKKLDKKRLKKK-SGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLM   75 (277)
T ss_pred             CCCCCceEEEEEEEccCCc----EEEEEEEcHHHhhcc-hhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecC
Confidence            7999999999999887554    499999976554322 22344556999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhc
Q 042539          106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS  185 (412)
Q Consensus       106 ~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~  185 (412)
                      .|++|..++.......+++..+..++.|++.||+|||+.||+||||||+||+++.++.++|+|||++......       
T Consensus        76 ~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~-------  148 (277)
T cd05607          76 NGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG-------  148 (277)
T ss_pred             CCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCC-------
Confidence            9999987776655556899999999999999999999999999999999999999999999999998654210       


Q ss_pred             ccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCC
Q 042539          186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  265 (412)
                                                                               .......||..|+|||++.+..+
T Consensus       149 ---------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~  171 (277)
T cd05607         149 ---------------------------------------------------------KTITQRAGTNGYMAPEILKEEPY  171 (277)
T ss_pred             ---------------------------------------------------------ceeeccCCCCCccCHHHHccCCC
Confidence                                                                     01123468999999999998889


Q ss_pred             CchhhHHHHHHHHHHHhhCCCCCCCCCH----HHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCCCCChhhh
Q 042539          266 EFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEI  339 (412)
Q Consensus       266 ~~~~DiwSlGvil~ell~g~~Pf~~~~~----~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~  339 (412)
                      +.++|+|||||++|+|++|..||.+...    .+...........  ....++++++||++||++||++|++.....+++
T Consensus       172 ~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~  251 (277)
T cd05607         172 SYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDP  251 (277)
T ss_pred             CCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhh
Confidence            9999999999999999999999976432    2333444333322  235688999999999999999999643334789


Q ss_pred             hcCCCCCCCCchhhcc-cCCCCCCC
Q 042539          340 KEHVFFKGVRWDLLTD-VLRPPFIP  363 (412)
Q Consensus       340 l~h~ff~~~~~~~~~~-~~~pp~~p  363 (412)
                      +.|+||++++|..+.. ...|||.|
T Consensus       252 ~~h~~f~~~~~~~~~~~~~~~~~~~  276 (277)
T cd05607         252 RKHEFFKTINFPRLEAGLIPPPFVP  276 (277)
T ss_pred             hcChhhcCCCHHHHhcCcCCCCCCC
Confidence            9999999999987765 34556654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=4.7e-49  Score=375.51  Aligned_cols=254  Identities=26%  Similarity=0.401  Sum_probs=209.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||+|+++.....  ......+.+|+.+++.++|+||+++++++..++.
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~----~~avK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   74 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKE----IVAIKKFKDSEEN--EEVKETTLRELKMLRTLKQENIVELKEAFRRRGK   74 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCc----EEEEEEEeccccc--ccchhhHHHHHHHHHhCCCccccchhhhEecCCE
Confidence            579999999999999999999987544    4999999765322  2334566779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.++.+..+...  ...+++..++.++.|++.||.|||++||+||||||+||+++.+|.+||+|||+++.+..
T Consensus        75 ~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  152 (287)
T cd07848          75 LYLVFEYVEKNMLELLEEM--PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSE  152 (287)
T ss_pred             EEEEEecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccc
Confidence            9999999999877654332  34599999999999999999999999999999999999999999999999999975421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                              .........||+.|+||
T Consensus       153 ~--------------------------------------------------------------~~~~~~~~~~~~~y~aP  170 (287)
T cd07848         153 G--------------------------------------------------------------SNANYTEYVATRWYRSP  170 (287)
T ss_pred             c--------------------------------------------------------------ccccccccccccccCCc
Confidence            1                                                              00111245789999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--------------CCC-----------------
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--------------TPE-----------------  306 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--------------~~~-----------------  306 (412)
                      |++.+..++.++|||||||++|+|++|++||.+.+..+....+...              .+.                 
T Consensus       171 E~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T cd07848         171 ELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLER  250 (287)
T ss_pred             HHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHH
Confidence            9999988999999999999999999999999987665543332210              000                 


Q ss_pred             --CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 --FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 --~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                        ....++++.+||.+||++||++|+    +++++++||||
T Consensus       251 ~~~~~~s~~~~dll~~~L~~~P~~R~----s~~~~l~hp~f  287 (287)
T cd07848         251 RYLGILSGVLLDLMKNLLKLNPTDRY----LTEQCLNHPAF  287 (287)
T ss_pred             hhhcccCHHHHHHHHHHccCCcccCC----CHHHHhcCCCC
Confidence              012467799999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=7e-49  Score=377.85  Aligned_cols=259  Identities=26%  Similarity=0.389  Sum_probs=206.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||+||+|+++.++.    .||||+++.....   .....+.+|+.+++.++||||+++++++.++.
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   76 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGK----LVALKVIRLQEEE---GTPFTAIREASLLKGLKHANIVLLHDIIHTKE   76 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCC----EEEEEEecccccc---ccchhHHHHHHHHhhCCCCCcCeEEEEEecCC
Confidence            5799999999999999999999976544    4999999754321   12334567999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+||||+. ++|..++... .+.+++..++.++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++...
T Consensus        77 ~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  154 (303)
T cd07869          77 TLTLVFEYVH-TDLCQYMDKH-PGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKS  154 (303)
T ss_pred             eEEEEEECCC-cCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceecc
Confidence            9999999996 4665555443 3458999999999999999999999999999999999999999999999999986431


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                               ........+||+.|+|
T Consensus       155 ~---------------------------------------------------------------~~~~~~~~~~~~~y~a  171 (303)
T cd07869         155 V---------------------------------------------------------------PSHTYSNEVVTLWYRP  171 (303)
T ss_pred             C---------------------------------------------------------------CCccCCCCcccCCCCC
Confidence            0                                                               0011123468999999


Q ss_pred             ceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHhc--CCC------------C--------------
Q 042539          257 PEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLM--KTP------------E--------------  306 (412)
Q Consensus       257 PE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~~--~~~------------~--------------  306 (412)
                      ||++.+. .++.++|||||||++|+|++|..||.+... .+.+..+..  ..+            .              
T Consensus       172 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (303)
T cd07869         172 PDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNL  251 (303)
T ss_pred             hHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccH
Confidence            9998764 578899999999999999999999987543 233332221  000            0              


Q ss_pred             -----CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          307 -----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       307 -----~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                           ....++.+.+||++||++||++|+    +++++++||||+++.+.
T Consensus       252 ~~~~~~~~~~~~~~dli~~mL~~dp~~R~----s~~~~l~h~~f~~~~~~  297 (303)
T cd07869         252 RQAWNKLSYVNHAEDLASKLLQCFPKNRL----SAQAALSHEYFSDLPPR  297 (303)
T ss_pred             HHHhhccCCChHHHHHHHHHhccCchhcc----CHHHHhcCcccccCChh
Confidence                 001346789999999999999999    69999999999988753

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=8.9e-49  Score=374.55  Aligned_cols=254  Identities=26%  Similarity=0.382  Sum_probs=208.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++++.||+|+||+||+|+++.++.    .||+|+++.....   .....+.+|+++++.++||||+++++++.++
T Consensus         3 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   75 (288)
T cd07871           3 KLETYVKLDKLGEGTYATVFKGRSKLTEN----LVALKEIRLEHEE---GAPCTAIREVSLLKNLKHANIVTLHDIIHTE   75 (288)
T ss_pred             ccccceEeeEEecCCCEEEEEEEECCCCC----EEEEEEecccccC---CcchhHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            57899999999999999999999877554    4999999754321   1234456799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+||||+.| +|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++..
T Consensus        76 ~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~  153 (288)
T cd07871          76 RCLTLVFEYLDS-DLKQYLDNC-GNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAK  153 (288)
T ss_pred             CeEEEEEeCCCc-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeec
Confidence            999999999975 787666543 235889999999999999999999999999999999999999999999999998643


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                               ........||+.|+
T Consensus       154 ~~~---------------------------------------------------------------~~~~~~~~~~~~y~  170 (288)
T cd07871         154 SVP---------------------------------------------------------------TKTYSNEVVTLWYR  170 (288)
T ss_pred             cCC---------------------------------------------------------------CccccCceeccccc
Confidence            110                                                               01112346899999


Q ss_pred             cceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------CC------
Q 042539          256 SPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------PE------  306 (412)
Q Consensus       256 APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~~------  306 (412)
                      |||++.+ ..++.++|||||||++|+|++|++||.+.+..+.+..+....                      +.      
T Consensus       171 aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T cd07871         171 PPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPL  250 (288)
T ss_pred             ChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCch
Confidence            9999876 457999999999999999999999999887766554443210                      00      


Q ss_pred             ---CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 ---FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 ---~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                         .+..+.+++|||.+||++||.+|+    +++|+++||||
T Consensus       251 ~~~~~~~~~~~~dll~~mL~~dp~~R~----t~~~~l~hp~f  288 (288)
T cd07871         251 INHAPRLDTDGIDLLSSLLLYETKSRI----SAEAALRHSYF  288 (288)
T ss_pred             HHhCCCCCHHHHHHHHHhcCcCcccCC----CHHHHhcCCCC
Confidence               123467899999999999999999    79999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=6.4e-49  Score=366.94  Aligned_cols=259  Identities=27%  Similarity=0.421  Sum_probs=217.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc-cceeeeeEEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF-LPKLLGSLETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~l~~~~~~~   95 (412)
                      +..|+.+++||+|+||+||+|+.+.++..    ||+|.+..+.-.  +..-....||+.+|+.|+|+| ||.|++++.+.
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~----VALKkirl~~~~--EG~P~taiREisllk~L~~~~~iv~L~dv~~~~   83 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKF----VALKKIRLEFEE--EGVPSTAIREISLLKRLSHANHIVRLHDVIHTS   83 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCE----EEEEEEeccccc--cCCCchhhHHHHHHHHhCCCcceEEEEeeeeec
Confidence            67899999999999999999999987654    999999765421  334556778999999999999 99999999887


Q ss_pred             C------eEEEEeeccCCCCchhHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           96 E------FLAWAVPYCPGGDLNVLRYKQND--RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        96 ~------~~~lv~e~~~gg~L~~~~~~~~~--~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      +      .+++|+||+ ..||..++.....  ..++...++.+++||+.||+|||++||+||||||+||||+++|.+||+
T Consensus        84 ~~~~~~~~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKla  162 (323)
T KOG0594|consen   84 NNHRGIGKLYLVFEFL-DRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLA  162 (323)
T ss_pred             ccccccceEEEEEEee-cccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeee
Confidence            7      899999999 4578777766543  358889999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+|+.+.-                                                               .......
T Consensus       163 DFGlAra~~i---------------------------------------------------------------p~~~yt~  179 (323)
T KOG0594|consen  163 DFGLARAFSI---------------------------------------------------------------PMRTYTP  179 (323)
T ss_pred             ccchHHHhcC---------------------------------------------------------------Ccccccc
Confidence            9999985421                                                               0111234


Q ss_pred             cccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCC---C-------------C-
Q 042539          248 FVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KTP---E-------------F-  307 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~~---~-------------~-  307 (412)
                      -++|.+|+|||++.|. .|+..+||||+|||++||+++++.|.|.+..+++..|..  +.|   .             + 
T Consensus       180 evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~  259 (323)
T KOG0594|consen  180 EVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFP  259 (323)
T ss_pred             cEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCc
Confidence            5789999999999997 689999999999999999999999999999888877753  111   0             1 


Q ss_pred             ------------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          308 ------------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       308 ------------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                  +..+++..|++.+||+++|.+|.    +++.++.|+||....
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~----Sa~~al~h~yf~~~~  309 (323)
T KOG0594|consen  260 KWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRI----SAKGALTHPYFSELP  309 (323)
T ss_pred             CCCCccchHHhccccCccHHHHHHHHhccCcccCc----CHHHHhcChhhcccc
Confidence                        11224789999999999999999    699999999999764

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.3e-50  Score=359.03  Aligned_cols=257  Identities=30%  Similarity=0.510  Sum_probs=224.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh----hhhHHHHHHHHHHHHHHhhcC-CCccceeeee
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL----HAKHEAERRARWEIRVLSRLS-HPFLPKLLGS   91 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~----~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~   91 (412)
                      .+.|.-.+.||.|..++|-.|.++.++..    +|+|+|....-    .+........++|+.||+++. ||+|+++.++
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e----~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~   91 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKE----FAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDV   91 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccc----eeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeee
Confidence            35678889999999999999888886655    99999864321    123345566778999999996 9999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      |+++..+++|+|.|+.|.|.+++...-  .++|..++.+++|++.|++|||.++||||||||+|||++++-++||+|||+
T Consensus        92 yes~sF~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGF  169 (411)
T KOG0599|consen   92 YESDAFVFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGF  169 (411)
T ss_pred             ccCcchhhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccce
Confidence            999999999999999999998887654  499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.+.                                                                .++.....|||
T Consensus       170 a~~l~----------------------------------------------------------------~GekLrelCGT  185 (411)
T KOG0599|consen  170 ACQLE----------------------------------------------------------------PGEKLRELCGT  185 (411)
T ss_pred             eeccC----------------------------------------------------------------CchhHHHhcCC
Confidence            98763                                                                44556678999


Q ss_pred             CCCccceeecC------CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----CCCCCCChHHHHHHHH
Q 042539          252 EEYVSPEVVRG------DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----PEFVGQRTALTDLIQR  320 (412)
Q Consensus       252 ~~Y~APE~l~~------~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----~~~~~~~~~~~dli~~  320 (412)
                      |+|.|||.+..      .+|+..+|+||+|||+|-|+.|.+||-.....-+++.|+.+.     +++.+.+..++|||.+
T Consensus       186 PgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsr  265 (411)
T KOG0599|consen  186 PGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISR  265 (411)
T ss_pred             CcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHH
Confidence            99999999853      468999999999999999999999998877777788888765     5566788999999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||+.||++|+    |++|+|+||||..
T Consensus       266 lLqVdp~~Ri----take~LaHpff~q  288 (411)
T KOG0599|consen  266 LLQVDPTKRI----TAKEALAHPFFIQ  288 (411)
T ss_pred             HHeeCchhcc----cHHHHhcChHHHH
Confidence            9999999999    7999999999954

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=3.7e-48  Score=369.85  Aligned_cols=277  Identities=35%  Similarity=0.621  Sum_probs=225.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|++.+.||+|+||.||++.+..++..    ||+|.+.+..... ......+.+|+.+++.++|+||+.+++.+.+++.+
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~----~avK~~~~~~~~~-~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~   75 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKM----YACKKLEKKRIKK-RKGESMALNEKQILEKVNSRFVVSLAYAYETKDAL   75 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCce----EEEEEEehhhccc-hHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEE
Confidence            478899999999999999999886544    9999987654322 23344566799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.|++|..++.......+++..+..++.|++.||.|||+.||+||||||+||+++.++.++|+|||++..... 
T Consensus        76 ~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~-  154 (285)
T cd05630          76 CLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE-  154 (285)
T ss_pred             EEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCC-
Confidence            9999999999998887665555699999999999999999999999999999999999999999999999998864311 


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     .......+||..|+|||
T Consensus       155 ---------------------------------------------------------------~~~~~~~~g~~~y~aPE  171 (285)
T cd05630         155 ---------------------------------------------------------------GQTIKGRVGTVGYMAPE  171 (285)
T ss_pred             ---------------------------------------------------------------CccccCCCCCccccChH
Confidence                                                                           01112346899999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH---HHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK---ETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~---~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ++.+..++.++|+|||||++|+|++|+.||.+....   .....+....  ......++++.+||.+||+.||++|+++.
T Consensus       172 ~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~  251 (285)
T cd05630         172 VVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQ  251 (285)
T ss_pred             HHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcCHHHccCCC
Confidence            999988999999999999999999999999875421   2222222111  11234678899999999999999999642


Q ss_pred             -CChhhhhcCCCCCCCCchhhcc-cCCCCCCCC
Q 042539          334 -RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPS  364 (412)
Q Consensus       334 -~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~  364 (412)
                       .+++++++||||++++|+.... ...|||.|.
T Consensus       252 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05630         252 GGGAREVKEHPLFKQINFKRLEAGMLEPPFKPD  284 (285)
T ss_pred             CCchHHHHcChhhhccCHHHHhcCCCCCCCCCC
Confidence             2489999999999999987655 335667664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.1e-48  Score=388.98  Aligned_cols=251  Identities=27%  Similarity=0.458  Sum_probs=215.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CC-----ccceeeeeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HP-----FLPKLLGSL   92 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hp-----nIv~l~~~~   92 (412)
                      +|.+++.||+|+||.|.+|.+..++..    ||||+|++..     ....+...|+++|..|+ |.     |||+++++|
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~----VAIKIiKN~k-----~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F  257 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEI----VAIKIIKNKK-----RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYF  257 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcE----EEEEeeccCh-----HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecc
Confidence            789999999999999999999986655    9999997643     33444556999999997 43     899999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC--CEEEcccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG--HVTLTDFD  170 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g--~vkL~DFG  170 (412)
                      ...+++|||+|++ +-+|++++....-.+|+...++.++.||+.||.+||+.||||+|||||||||.+-+  .|||+|||
T Consensus       258 ~fr~HlciVfELL-~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFG  336 (586)
T KOG0667|consen  258 YFRNHLCIVFELL-STNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFG  336 (586)
T ss_pred             ccccceeeeehhh-hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecc
Confidence            9999999999999 67899999988888899999999999999999999999999999999999998654  69999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      .|....                                                                  ...-+++.
T Consensus       337 SSc~~~------------------------------------------------------------------q~vytYiQ  350 (586)
T KOG0667|consen  337 SSCFES------------------------------------------------------------------QRVYTYIQ  350 (586)
T ss_pred             cccccC------------------------------------------------------------------Ccceeeee
Confidence            997542                                                                  22237788


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCCC----------------------
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KTPE----------------------  306 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~~~----------------------  306 (412)
                      +..|+|||++.|.+|+.+.||||||||++||++|.+.|.|.+..+++..|+.  +.|+                      
T Consensus       351 SRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~  430 (586)
T KOG0667|consen  351 SRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPR  430 (586)
T ss_pred             ccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCcee
Confidence            9999999999999999999999999999999999999999999988877651  0000                      


Q ss_pred             ----------------------------CC------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          307 ----------------------------FV------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       307 ----------------------------~~------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                                                  .+            .....+.|||.+||.+||.+|+    |+.++++||||.
T Consensus       431 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~----tp~qal~Hpfl~  506 (586)
T KOG0667|consen  431 LCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERI----TPAQALNHPFLT  506 (586)
T ss_pred             eeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcC----CHHHHhcCcccc
Confidence                                        01            0013578999999999999999    799999999999


Q ss_pred             CCC
Q 042539          347 GVR  349 (412)
Q Consensus       347 ~~~  349 (412)
                      +..
T Consensus       507 ~~~  509 (586)
T KOG0667|consen  507 GTS  509 (586)
T ss_pred             ccc
Confidence            654

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.6e-49  Score=383.31  Aligned_cols=259  Identities=29%  Similarity=0.456  Sum_probs=232.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|..++++|+|+||.+++++++..+..    |++|.|.......+  ..+.+.+|+.+++++.|||||.+++.|..+
T Consensus         2 ~m~~Ye~~~~iG~GafG~a~lvrhk~~~~~----~vlK~I~l~~~t~~--~r~~A~~E~~lis~~~hP~iv~y~ds~~~~   75 (426)
T KOG0589|consen    2 EMDNYEVLRQVGRGAFGSALLVRHKSDDKL----YVLKKINLEKLTEP--ERRSAIQEMDLLSKLLHPNIVEYKDSFEED   75 (426)
T ss_pred             ccchhhhhhhcCccccchhhhhhhccCCce----EEEEEEeccccCch--hhHHHHHHHHHHHhccCCCeeeeccchhcC
Confidence            578999999999999999999998876554    99999987765433  344777899999999999999999999988


Q ss_pred             Ce-EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           96 EF-LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        96 ~~-~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      +. +||||+||+||+|...+..++...|+|+.+..|+.|++.||.|||+++|+|||||+.||++++++.|||.|||+|+.
T Consensus        76 ~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~  155 (426)
T KOG0589|consen   76 GQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKI  155 (426)
T ss_pred             CceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhh
Confidence            87 99999999999999998888777899999999999999999999999999999999999999999999999999997


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +...                                                               .....+.+|||.|
T Consensus       156 l~~~---------------------------------------------------------------~~~a~tvvGTp~Y  172 (426)
T KOG0589|consen  156 LNPE---------------------------------------------------------------DSLASTVVGTPYY  172 (426)
T ss_pred             cCCc---------------------------------------------------------------hhhhheecCCCcc
Confidence            6321                                                               2245688999999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |+||++.+.+|+.++|||||||++|||++-+++|.+.+......+|....  |.....+.+++.+|..||..+|..||  
T Consensus       173 mcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RP--  250 (426)
T KOG0589|consen  173 MCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRP--  250 (426)
T ss_pred             cCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCC--
Confidence            99999999999999999999999999999999999999999998888765  33345679999999999999999999  


Q ss_pred             CCChhhhhcCCCCCC
Q 042539          333 LRGACEIKEHVFFKG  347 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~  347 (412)
                        ++.++|.+|....
T Consensus       251 --sa~~LL~~P~l~~  263 (426)
T KOG0589|consen  251 --SALELLRRPHLLR  263 (426)
T ss_pred             --CHHHHhhChhhhh
Confidence              6999999988763

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.7e-47  Score=373.11  Aligned_cols=258  Identities=24%  Similarity=0.391  Sum_probs=215.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|++++.||+|+||.||+|+++.++..    ||+|++....   .......+.+|++++++++||||+++++++.
T Consensus         1 ~l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~----~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   73 (331)
T cd06649           1 ELKDDDFERISELGAGNGGVVTKVQHKPSGLI----MARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFY   73 (331)
T ss_pred             CCCcccceEEEeecCCCCEEEEEEEECCCCcE----EEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEE
Confidence            36679999999999999999999999875544    9999996542   2334567888999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEcccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .++.+++||||+.||+|..++....  .+++..+..++.|++.||.|||+. +|+||||||+|||++.+|.+||+|||++
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  151 (331)
T cd06649          74 SDGEISICMEHMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (331)
T ss_pred             ECCEEEEEeecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccc
Confidence            9999999999999999988876543  489999999999999999999986 6999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....                                                                 ......+||+
T Consensus       152 ~~~~~-----------------------------------------------------------------~~~~~~~g~~  166 (331)
T cd06649         152 GQLID-----------------------------------------------------------------SMANSFVGTR  166 (331)
T ss_pred             ccccc-----------------------------------------------------------------cccccCCCCc
Confidence            64421                                                                 1112457999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh-------------------------------
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-------------------------------  301 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~-------------------------------  301 (412)
                      .|+|||++.+..++.++|||||||++|||++|+.||...+..+....+.                               
T Consensus       167 ~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (331)
T cd06649         167 SYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMD  246 (331)
T ss_pred             CcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccc
Confidence            9999999999889999999999999999999999998765443322110                               


Q ss_pred             ---------------cCC-CC--CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          302 ---------------MKT-PE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       302 ---------------~~~-~~--~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                     ... +.  ....++++++||.+||++||++||    +++++++||||+...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rp----t~~ell~h~~~~~~~  308 (331)
T cd06649         247 SRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERA----DLKMLMNHTFIKRSE  308 (331)
T ss_pred             cccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCC----CHHHHhcChHHhhcc
Confidence                           000 11  113467899999999999999999    799999999998643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.5e-49  Score=368.48  Aligned_cols=252  Identities=27%  Similarity=0.496  Sum_probs=209.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--   95 (412)
                      -.|.-.+++|+|+||.||.+....++    ..||||.+-.+.-        .-.+|+++|+.++|||||+|..+|...  
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~----~~vAIKKv~~d~r--------~knrEl~im~~l~HpNIV~L~~~f~~~~~   91 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETE----EEVAIKKVLQDKR--------YKNRELQIMRKLDHPNIVRLLYFFSSSTE   91 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCC----ceeEEEEecCCCC--------cCcHHHHHHHhcCCcCeeeEEEEEEecCC
Confidence            36788899999999999999988764    4499998754331        112499999999999999999998643  


Q ss_pred             C---eEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEccc
Q 042539           96 E---FLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDF  169 (412)
Q Consensus        96 ~---~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DF  169 (412)
                      .   .+.+||||++ .+|...+..  ..+..++.-.++.|..||++||.|||++||+||||||+|+|+|.+ |.+|||||
T Consensus        92 ~d~~~lnlVleymP-~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDF  170 (364)
T KOG0658|consen   92 SDEVYLNLVLEYMP-ETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDF  170 (364)
T ss_pred             CchhHHHHHHHhch-HHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccC
Confidence            2   5789999995 567666553  234468999999999999999999999999999999999999987 99999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |.|+.+.                                                                .++...++.
T Consensus       171 GSAK~L~----------------------------------------------------------------~~epniSYi  186 (364)
T KOG0658|consen  171 GSAKVLV----------------------------------------------------------------KGEPNISYI  186 (364)
T ss_pred             Ccceeec----------------------------------------------------------------cCCCceeEE
Confidence            9999873                                                                334456788


Q ss_pred             cCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCC------------------C--
Q 042539          250 GTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KTP------------------E--  306 (412)
Q Consensus       250 gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~~------------------~--  306 (412)
                      .|+.|+|||.+.|. .|+.+.||||.||++.||+-|++.|.|.+..+++..|+.  +.|                  .  
T Consensus       187 cSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik  266 (364)
T KOG0658|consen  187 CSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIK  266 (364)
T ss_pred             EeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccc
Confidence            99999999999986 589999999999999999999999999998888777652  111                  1  


Q ss_pred             --------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          307 --------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       307 --------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                              ....++++.||+.++|.++|.+|.    ++.|++.||||+...-
T Consensus       267 ~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~----~~~~~l~h~fFdelr~  314 (364)
T KOG0658|consen  267 AHPWHKVFFKRLPPDALDLLSKLLQYSPSKRL----SALEALAHPFFDELRD  314 (364)
T ss_pred             cccceeecccCCCHHHHHHHHHHhccChhhcC----CHHHHhcchhhHHhhC
Confidence                    123468999999999999999999    6999999999987653

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-48  Score=375.05  Aligned_cols=252  Identities=30%  Similarity=0.471  Sum_probs=216.0

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ....+..+++.+.+.||+|+||+||.+.++....     ||+|++.........  ...+.+|+.+|.+++|||||++++
T Consensus        34 ~~~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~-----vavK~~~~~~~~~~~--~~~f~~E~~il~~l~HpNIV~f~G  106 (362)
T KOG0192|consen   34 PEEEIDPDELPIEEVLGSGSFGTVYKGKWRGTDV-----VAVKIISDPDFDDES--RKAFRREASLLSRLRHPNIVQFYG  106 (362)
T ss_pred             cceecChHHhhhhhhcccCCceeEEEEEeCCcee-----EEEEEecchhcChHH--HHHHHHHHHHHHhCCCCCeeeEEE
Confidence            4567788899999999999999999999875432     899999876654333  778889999999999999999999


Q ss_pred             eEEeCC-eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC-ceeeeCCCCceEEccCC-CEEEc
Q 042539           91 SLETDE-FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG-IAYRDLKPENILIRQSG-HVTLT  167 (412)
Q Consensus        91 ~~~~~~-~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~-iiHrDlKp~NiLl~~~g-~vkL~  167 (412)
                      ++.... .+++||||+.+|+|..+++....+.++...+..++.||+.|+.|||+++ ||||||||+|||++.++ ++|||
T Consensus       107 ~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~  186 (362)
T KOG0192|consen  107 ACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIA  186 (362)
T ss_pred             EEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEEC
Confidence            999887 7999999999999999988754567999999999999999999999999 99999999999999998 99999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++......                                                               .....
T Consensus       187 DFGlsr~~~~~~---------------------------------------------------------------~~~~~  203 (362)
T KOG0192|consen  187 DFGLSREKVISK---------------------------------------------------------------TSMTS  203 (362)
T ss_pred             CCccceeecccc---------------------------------------------------------------ccccC
Confidence            999997642110                                                               11123


Q ss_pred             cccCCCCccceeec--CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CCCCCC-CChHHHHHHHHhh
Q 042539          248 FVGTEEYVSPEVVR--GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPEFVG-QRTALTDLIQRLL  322 (412)
Q Consensus       248 ~~gt~~Y~APE~l~--~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~~~-~~~~~~dli~~~L  322 (412)
                      ..||+.|||||++.  ...|+.++||||||+++|||+||+.||.+....+....+...  .+..+. +++.+..||.+||
T Consensus       204 ~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW  283 (362)
T KOG0192|consen  204 VAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCW  283 (362)
T ss_pred             CCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhC
Confidence            57999999999999  568999999999999999999999999998886666666533  244444 7789999999999


Q ss_pred             hhCCCccCCC
Q 042539          323 EKDPVKRLGY  332 (412)
Q Consensus       323 ~~dP~~R~~~  332 (412)
                      ..||.+||++
T Consensus       284 ~~dp~~RP~f  293 (362)
T KOG0192|consen  284 LVDPSRRPSF  293 (362)
T ss_pred             CCCCCcCCCH
Confidence            9999999965

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-47  Score=368.95  Aligned_cols=309  Identities=48%  Similarity=0.834  Sum_probs=241.7

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++.+.||+|+||+||+|.+..++    ..||+|.+.+..... ......+.+|+++++.++|+||+++++.+.+++.
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~----~~~aiK~~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   75 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTG----KLFALKVLDKKEMIK-RNKVKRVLTEQEILATLDHPFLPTLYASFQTETY   75 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCC----cEEEEEEEeccccch-HHHHHHHHHHHHHHHhCCCCCchhheeeeecCCE
Confidence            58999999999999999999987744    449999997765432 2345667889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+||||+.|++|..++.......+++..++.++.|++.||+|||+.|++|+||||+||+++.+|.++|+|||++.....
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  155 (316)
T cd05574          76 LCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDV  155 (316)
T ss_pred             EEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcccc
Confidence            99999999999999887765556799999999999999999999999999999999999999999999999999875532


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ...........  .                       ..... ..+..        ............+.++||..|+||
T Consensus       156 ~~~~~~~~~~~--~-----------------------~~~~~-~~~~~--------~~~~~~~~~~~~~~~~g~~~y~aP  201 (316)
T cd05574         156 EPPPVSKALRK--G-----------------------SRRSS-VNSIP--------SETFSEEPSFRSNSFVGTEEYIAP  201 (316)
T ss_pred             ccccccccccc--c-----------------------ccccc-ccccc--------hhhhcccccCCCCCCcCccCCcCH
Confidence            21100000000  0                       00000 00000        000000122234567899999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC---CChHHHHHHHHhhhhCCCccCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG---QRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~---~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      |++.+..++.++|||||||++|+|++|..||.+.+....+.++......++.   .++.+.++|.+||..||++|++...
T Consensus       202 E~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~  281 (316)
T cd05574         202 EVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKR  281 (316)
T ss_pred             HHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchh
Confidence            9999988999999999999999999999999998888888777765544433   4789999999999999999996655


Q ss_pred             ChhhhhcCCCCCCCCchhhcccCCCCCCCCCC
Q 042539          335 GACEIKEHVFFKGVRWDLLTDVLRPPFIPSRE  366 (412)
Q Consensus       335 ~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~  366 (412)
                      ++++++.|+||++.+|..+.. ..||-+|..+
T Consensus       282 ~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~  312 (316)
T cd05574         282 GAAEIKQHPFFRGVNWALIRH-TTPPIIPRPD  312 (316)
T ss_pred             hHHHHHcCchhhcCChhhccc-CCCCCCCCcc
Confidence            699999999999999987766 4455555443

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.4e-47  Score=365.93  Aligned_cols=254  Identities=27%  Similarity=0.373  Sum_probs=205.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc---CCCccceeeeeEE-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL---SHPFLPKLLGSLE-   93 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l---~hpnIv~l~~~~~-   93 (412)
                      ++|++++.||+|+||+||+|++...   .+..||+|+++......  .......+|+.+++.+   +||||+++++++. 
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~---~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~   75 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKN---GGRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV   75 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCC---CCeEEEEEEEecccCCC--CchHHHHHHHHHHHhhcccCCCCcceEEEEEec
Confidence            4799999999999999999988543   23459999986543211  1223344577777666   5999999999885 


Q ss_pred             ----eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           94 ----TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        94 ----~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                          ....+++||||+. ++|..++.......+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        76 ~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Df  154 (290)
T cd07862          76 SRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADF  154 (290)
T ss_pred             ccCCCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccc
Confidence                2456999999996 57877776655556899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++....                                                                ........
T Consensus       155 g~~~~~~~----------------------------------------------------------------~~~~~~~~  170 (290)
T cd07862         155 GLARIYSF----------------------------------------------------------------QMALTSVV  170 (290)
T ss_pred             cceEeccC----------------------------------------------------------------Cccccccc
Confidence            99865311                                                                11223457


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C---C------------------
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P---E------------------  306 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~---~------------------  306 (412)
                      ||+.|+|||++.+..++.++|||||||++|||++|.+||.+.+..+.+..+....  +   .                  
T Consensus       171 ~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (290)
T cd07862         171 VTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQ  250 (290)
T ss_pred             ccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCC
Confidence            8999999999998889999999999999999999999999988777766664311  0   0                  


Q ss_pred             -----CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 -----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 -----~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                           .+..+..+.+||.+||+.||++||    ++.++++||||
T Consensus       251 ~~~~~~~~~~~~~~~li~~~l~~~P~~R~----s~~~~l~hp~f  290 (290)
T cd07862         251 PIEKFVTDIDELGKDLLLKCLTFNPAKRI----SAYSALSHPYF  290 (290)
T ss_pred             CHHHHccCCCHHHHHHHHHHhccCchhcC----CHHHHhcCCCC
Confidence                 123567789999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=3.8e-47  Score=362.72  Aligned_cols=277  Identities=34%  Similarity=0.602  Sum_probs=227.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|+..+.||+|+||+||++.+..++..    ||+|++.+..... ......+.+|+++++.++|+||+.+++++.+++.+
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~----~aiK~~~~~~~~~-~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~   75 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKM----YACKRLEKKRIKK-RKGESMALNEKQILEKVNSQFVVNLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcE----EEEEEeehhhhhh-hhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEE
Confidence            478899999999999999998875544    9999997655432 23345567799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.|++|..++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++..... 
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~-  154 (285)
T cd05632          76 CLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPE-  154 (285)
T ss_pred             EEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCC-
Confidence            9999999999998877765555699999999999999999999999999999999999999999999999998864310 


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........|+..|+|||
T Consensus       155 ---------------------------------------------------------------~~~~~~~~g~~~~~aPE  171 (285)
T cd05632         155 ---------------------------------------------------------------GESIRGRVGTVGYMAPE  171 (285)
T ss_pred             ---------------------------------------------------------------CCcccCCCCCcCccChH
Confidence                                                                           01112346899999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh----cCCCC-CCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL----MKTPE-FVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~----~~~~~-~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ++.+..++.++|+|||||++|+|++|..||.+.........+.    ..... ....+.++.+||.+||+.||++|+++.
T Consensus       172 ~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05632         172 VLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQ  251 (285)
T ss_pred             HhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCc
Confidence            9998889999999999999999999999998876544333322    22222 234678899999999999999999753


Q ss_pred             C-ChhhhhcCCCCCCCCchhhcc-cCCCCCCCC
Q 042539          334 R-GACEIKEHVFFKGVRWDLLTD-VLRPPFIPS  364 (412)
Q Consensus       334 ~-~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~  364 (412)
                      . .+.+++.|+||+.++|+.+.. ...|+|.|.
T Consensus       252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05632         252 EEGAGEVKRHPFFRNMNFKRLEAGMLDPPFVPD  284 (285)
T ss_pred             ccChHHHHcChhhhcCCHHHHhcCcCCCCCCCC
Confidence            2 389999999999999986544 446777764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.1e-47  Score=372.52  Aligned_cols=260  Identities=25%  Similarity=0.365  Sum_probs=206.9

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC---
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD---   95 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~---   95 (412)
                      +|++.+.||+|+||.||+|+++.++.    .||||.+.....  .......+.+|+++++.++||||+++++++...   
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   74 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGE----KVAIKKINDVFE--HVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRR   74 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCC----EEEEEEechhhc--cchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCC
Confidence            58999999999999999999877554    499999864322  122345677899999999999999999988543   


Q ss_pred             --CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           96 --EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        96 --~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                        ..+|+|||||. ++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++
T Consensus        75 ~~~~~~lv~e~~~-~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~  151 (338)
T cd07859          75 EFKDIYVVFELME-SDLHQVIKAN--DDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLAR  151 (338)
T ss_pred             CCceEEEEEecCC-CCHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCcccc
Confidence              35899999994 6787766543  349999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ......                                                            .........+||+.
T Consensus       152 ~~~~~~------------------------------------------------------------~~~~~~~~~~~t~~  171 (338)
T cd07859         152 VAFNDT------------------------------------------------------------PTAIFWTDYVATRW  171 (338)
T ss_pred             cccccc------------------------------------------------------------CccccccCCCCCCC
Confidence            542110                                                            00011234579999


Q ss_pred             CccceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh---------------------------cCC
Q 042539          254 YVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---------------------------MKT  304 (412)
Q Consensus       254 Y~APE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~---------------------------~~~  304 (412)
                      |+|||++.+  ..++.++|||||||++|+|++|++||.+.+.......+.                           ...
T Consensus       172 y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  251 (338)
T cd07859         172 YRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQ  251 (338)
T ss_pred             cCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccC
Confidence            999999876  567899999999999999999999998876543322111                           000


Q ss_pred             -----CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          305 -----PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       305 -----~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                           ..++..++.+.++|.+||+.||++||    +++++++||||+++...
T Consensus       252 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp----t~~e~l~hp~f~~~~~~  299 (338)
T cd07859         252 PVPFSQKFPNADPLALRLLERLLAFDPKDRP----TAEEALADPYFKGLAKV  299 (338)
T ss_pred             CCchHHhcCCCChHHHHHHHHHcCcCcccCC----CHHHHhcCchhhhcCcc
Confidence                 01234567899999999999999999    69999999999986653

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-50  Score=378.89  Aligned_cols=256  Identities=27%  Similarity=0.437  Sum_probs=220.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ..|..++.||+|+||.||++.+..++..    ||+|++..+..   .+....+.+|+.+|.+++++||.++|+.|..+..
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~----vAiKii~Le~~---~deIediqqei~~Ls~~~~~~it~yygsyl~g~~   85 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKV----VAIKIIDLEEA---EDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTK   85 (467)
T ss_pred             cccccchhccccccceeeeeeeccccce----EEEEEechhhc---chhhHHHHHHHHHHHhcCcchHHhhhhheeeccc
Confidence            4677789999999999999999886655    99999976653   3344556679999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      ++++||||.||++..++...  +.+.|.++..++++++.||.|||.++.+|||||+.|||+..+|.+||+|||.+..+.+
T Consensus        86 LwiiMey~~gGsv~~lL~~~--~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~  163 (467)
T KOG0201|consen   86 LWIIMEYCGGGSVLDLLKSG--NILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTN  163 (467)
T ss_pred             HHHHHHHhcCcchhhhhccC--CCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeec
Confidence            99999999999998887653  3469999999999999999999999999999999999999999999999999976521


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ...+..+|+|||.||||
T Consensus       164 ---------------------------------------------------------------~~~rr~tfvGTPfwMAP  180 (467)
T KOG0201|consen  164 ---------------------------------------------------------------TVKRRKTFVGTPFWMAP  180 (467)
T ss_pred             ---------------------------------------------------------------hhhccccccccccccch
Confidence                                                                           22334799999999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-C-CCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-V-GQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~-~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      |++++..|+.++||||||++.+||++|.+|+........+..|-...|+. . .+++.+++||..||.+||+.||    +
T Consensus       181 EVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~Rp----s  256 (467)
T KOG0201|consen  181 EVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRP----S  256 (467)
T ss_pred             hhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCc----C
Confidence            99999999999999999999999999999999877644444443433332 2 4578899999999999999999    6


Q ss_pred             hhhhhcCCCCCCCC
Q 042539          336 ACEIKEHVFFKGVR  349 (412)
Q Consensus       336 ~~e~l~h~ff~~~~  349 (412)
                      |.++++|+|++...
T Consensus       257 A~~LLKh~FIk~a~  270 (467)
T KOG0201|consen  257 AKELLKHKFIKRAK  270 (467)
T ss_pred             HHHHhhhHHHHhcC
Confidence            99999999998754

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=1.5e-46  Score=359.29  Aligned_cols=275  Identities=38%  Similarity=0.680  Sum_probs=233.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||.||++.+...+    +.||+|++.+.... .......+.+|+++++.++||||+++++++.+++.
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~----~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   75 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSG----KYYALKILSKAKIV-KLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSN   75 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCC----CEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCe
Confidence            58999999999999999999988754    44999999765442 22345667889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.|++|..++...  ..+++..+..++.|++.||.|||++||+|+||+|+|||++.+|.+||+|||+++....
T Consensus        76 ~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~  153 (290)
T cd05580          76 LYLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKG  153 (290)
T ss_pred             EEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCC
Confidence            99999999999998887654  4599999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                                  ....+|++.|+||
T Consensus       154 ~------------------------------------------------------------------~~~~~~~~~y~aP  167 (290)
T cd05580         154 R------------------------------------------------------------------TYTLCGTPEYLAP  167 (290)
T ss_pred             C------------------------------------------------------------------CCCCCCCccccCh
Confidence            0                                                                  2234689999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC-CCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY-LRG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~-~~~  335 (412)
                      |.+.+..++.++|+|||||++|+|++|..||...+......++......++ ..+..++++|.+||..||.+|++. ..+
T Consensus       168 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~  247 (290)
T cd05580         168 EIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNG  247 (290)
T ss_pred             hhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCCccCCHHHHHHHHHHccCCHHHccCcccCC
Confidence            999888889999999999999999999999998887777777776554443 457899999999999999999965 347


Q ss_pred             hhhhhcCCCCCCCCchhhc-ccCCCCCCCCC
Q 042539          336 ACEIKEHVFFKGVRWDLLT-DVLRPPFIPSR  365 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~  365 (412)
                      ++++++||||+.++|..+. .....|+.|..
T Consensus       248 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (290)
T cd05580         248 VNDIKNHPWFAGIDWIALLQRKIEAPFIPKV  278 (290)
T ss_pred             HHHHHcCcccccCCHHHHhhccCCCCccCCC
Confidence            9999999999999997553 34456666554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.5e-47  Score=378.19  Aligned_cols=252  Identities=25%  Similarity=0.343  Sum_probs=202.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|++++.||+|+||.||+|.+..++..    ||+|....          ..+.+|++++++++|||||+++++|.
T Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~----vaiK~~~~----------~~~~~E~~il~~l~HpnIv~~~~~~~  153 (391)
T PHA03212         88 GIEKAGFSILETFTPGAEGFAFACIDNKTCEH----VVIKAGQR----------GGTATEAHILRAINHPSIIQLKGTFT  153 (391)
T ss_pred             ccccCCcEEEEEEcCCCCeEEEEEEECCCCCE----EEEechhh----------hhhHHHHHHHHhCCCCCCCCEeEEEE
Confidence            45667899999999999999999999876554    99997532          23456999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .+...|+|||++. ++|..++...  ..+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+
T Consensus       154 ~~~~~~lv~e~~~-~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~  230 (391)
T PHA03212        154 YNKFTCLILPRYK-TDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAAC  230 (391)
T ss_pred             ECCeeEEEEecCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCccc
Confidence            9999999999995 6776665443  358999999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                              ........+||+.
T Consensus       231 ~~~~~--------------------------------------------------------------~~~~~~~~~gt~~  248 (391)
T PHA03212        231 FPVDI--------------------------------------------------------------NANKYYGWAGTIA  248 (391)
T ss_pred             ccccc--------------------------------------------------------------cccccccccCccC
Confidence            43110                                                              0112234679999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC-------HHHHHHHHhc------------------------
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-------RKETFRNVLM------------------------  302 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-------~~~~~~~i~~------------------------  302 (412)
                      |+|||++.+..++.++|||||||++|||++|..||.+..       ....+..++.                        
T Consensus       249 y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  328 (391)
T PHA03212        249 TNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGL  328 (391)
T ss_pred             CCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHH
Confidence            999999999999999999999999999999998875421       1111111110                        


Q ss_pred             --CC---C----C---CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          303 --KT---P----E---FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       303 --~~---~----~---~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                        ..   +    .   ....+.++.+||.+||+.||.+||    +++|+++||||+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rp----ta~elL~hp~f~~~  382 (391)
T PHA03212        329 AKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRP----SAEALLDFAAFQDI  382 (391)
T ss_pred             HhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCC----CHHHHhcChhhccC
Confidence              00   0    0   012345789999999999999999    79999999999864

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=4.3e-47  Score=383.97  Aligned_cols=255  Identities=25%  Similarity=0.432  Sum_probs=204.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ...++|++++.||+|+||+||+|.+..++.    .||||++.+..        ....+|+.+++.++|+|||+++++|..
T Consensus        63 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~----~vAiK~i~~~~--------~~~~~Ei~il~~l~h~niv~l~~~~~~  130 (440)
T PTZ00036         63 SPNKSYKLGNIIGNGSFGVVYEAICIDTSE----KVAIKKVLQDP--------QYKNRELLIMKNLNHINIIFLKDYYYT  130 (440)
T ss_pred             CcCCeEEEeEEEEeCCCEEEEEEEECCCCC----EEEEEEEecCc--------chHHHHHHHHHhcCCCCCcceeeeEee
Confidence            345689999999999999999999876544    49999885432        122359999999999999999998753


Q ss_pred             C--------CeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-C
Q 042539           95 D--------EFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-H  163 (412)
Q Consensus        95 ~--------~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~  163 (412)
                      .        ..+++|||||.+ +|..++..  .....+++..++.++.||+.||.|||++||+||||||+|||++.++ .
T Consensus       131 ~~~~~~~~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~  209 (440)
T PTZ00036        131 ECFKKNEKNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHT  209 (440)
T ss_pred             cccccCCCceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCc
Confidence            2        257899999976 45444332  2345699999999999999999999999999999999999999765 6


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+|+.+..                                                                +.
T Consensus       210 vkL~DFGla~~~~~----------------------------------------------------------------~~  225 (440)
T PTZ00036        210 LKLCDFGSAKNLLA----------------------------------------------------------------GQ  225 (440)
T ss_pred             eeeeccccchhccC----------------------------------------------------------------CC
Confidence            99999999975421                                                                11


Q ss_pred             CCcccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C---------------
Q 042539          244 RSNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P---------------  305 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~---------------  305 (412)
                      ...+.+||+.|+|||++.+. .++.++|||||||++|||++|.+||.+.+..+.+.+++...  +               
T Consensus       226 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~  305 (440)
T PTZ00036        226 RSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADI  305 (440)
T ss_pred             CcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcc
Confidence            22345789999999998764 68999999999999999999999999987766655554210  0               


Q ss_pred             CC-------------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          306 EF-------------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       306 ~~-------------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      .+             ...++++.+||.+||++||.+|+    ++.++++||||..+..
T Consensus       306 ~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~----ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        306 KFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRL----NPIEALADPFFDDLRD  359 (440)
T ss_pred             cCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCc----CHHHHhCChhHHhhhc
Confidence            01             12457899999999999999999    7999999999987654

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=9.6e-47  Score=371.81  Aligned_cols=254  Identities=26%  Similarity=0.429  Sum_probs=205.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ...++|++++.||+|+||.||+|++..++.    .||+|++.+...  .......+.+|+.+++.++||||+++++++..
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~   91 (359)
T cd07876          18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGI----NVAVKKLSRPFQ--NQTHAKRAYRELVLLKCVNHKNIISLLNVFTP   91 (359)
T ss_pred             hhhhceEEEEEeecCCCEEEEEEEEcCCCc----eeEEEEeccccc--chhHHHHHHHHHHHHHhCCCCCEeeeeeeecc
Confidence            346899999999999999999999877554    499999976532  22345567789999999999999999999865


Q ss_pred             CC------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           95 DE------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        95 ~~------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      ..      .+|+||||+.++ |...+.    ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|
T Consensus        92 ~~~~~~~~~~~lv~e~~~~~-l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~D  166 (359)
T cd07876          92 QKSLEEFQDVYLVMELMDAN-LCQVIH----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILD  166 (359)
T ss_pred             CCCccccceeEEEEeCCCcC-HHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEec
Confidence            43      579999999765 433332    2388999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++....                                                                .......
T Consensus       167 fg~a~~~~~----------------------------------------------------------------~~~~~~~  182 (359)
T cd07876         167 FGLARTACT----------------------------------------------------------------NFMMTPY  182 (359)
T ss_pred             CCCcccccc----------------------------------------------------------------CccCCCC
Confidence            999864311                                                                1112234


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc----------------------CCCC
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM----------------------KTPE  306 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~----------------------~~~~  306 (412)
                      .||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+....+..++.                      ..+.
T Consensus       183 ~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (359)
T cd07876         183 VVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQ  262 (359)
T ss_pred             cccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCC
Confidence            789999999999999999999999999999999999999998765443322211                      1111


Q ss_pred             CC---------------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          307 FV---------------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       307 ~~---------------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ..                     ..++.+++||.+||..||++|+    ++.|+++||||..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~----t~~e~l~hp~~~~  320 (359)
T cd07876         263 YPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRI----SVDEALRHPYITV  320 (359)
T ss_pred             CCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCC----CHHHHhcCchhhh
Confidence            11                     1246789999999999999999    6999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=7e-47  Score=372.04  Aligned_cols=255  Identities=28%  Similarity=0.444  Sum_probs=206.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ...+++|+++++||+|+||+||+|++..++.    .||||++....   .......+.+|+++++.++|+||+++++++.
T Consensus        70 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  142 (353)
T PLN00034         70 AKSLSELERVNRIGSGAGGTVYKVIHRPTGR----LYALKVIYGNH---EDTVRRQICREIEILRDVNHPNVVKCHDMFD  142 (353)
T ss_pred             CCCHHHHhhhhhccCCCCeEEEEEEECCCCC----EEEEEEEecCC---cHHHHHHHHHHHHHHHhCCCCCcceeeeEec
Confidence            4457899999999999999999999876544    49999996543   2334566788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .++.+|+|||||.||+|...      ....+..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus       143 ~~~~~~lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~  216 (353)
T PLN00034        143 HNGEIQVLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSR  216 (353)
T ss_pred             cCCeEEEEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccce
Confidence            99999999999999998532      236788889999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+...                                                               .......+||..
T Consensus       217 ~~~~~---------------------------------------------------------------~~~~~~~~gt~~  233 (353)
T PLN00034        217 ILAQT---------------------------------------------------------------MDPCNSSVGTIA  233 (353)
T ss_pred             ecccc---------------------------------------------------------------cccccccccCcc
Confidence            54210                                                               011234579999


Q ss_pred             CccceeecCC-----CCCchhhHHHHHHHHHHHhhCCCCCCCCCH---HHHHHHHhcCC-C-CCCCCChHHHHHHHHhhh
Q 042539          254 YVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPFRGKNR---KETFRNVLMKT-P-EFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       254 Y~APE~l~~~-----~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~~~~~i~~~~-~-~~~~~~~~~~dli~~~L~  323 (412)
                      |+|||++...     ..+.++|||||||++|||++|+.||.....   ......+.... + .....+.++++||.+||.
T Consensus       234 y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  313 (353)
T PLN00034        234 YMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQ  313 (353)
T ss_pred             ccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHcc
Confidence            9999998532     235689999999999999999999974332   22222222221 1 223567899999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      .||++|+    ++.|+++||||.+.
T Consensus       314 ~~P~~Rp----t~~ell~hp~~~~~  334 (353)
T PLN00034        314 REPAKRW----SAMQLLQHPFILRA  334 (353)
T ss_pred             CChhhCc----CHHHHhcCcccccC
Confidence            9999999    69999999999863

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.1e-46  Score=359.18  Aligned_cols=252  Identities=27%  Similarity=0.369  Sum_probs=202.8

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc---CCCccceeeeeEEe-
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL---SHPFLPKLLGSLET-   94 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l---~hpnIv~l~~~~~~-   94 (412)
                      +|++++.||+|+||+||+|+++.++.    .||+|.++......  .......+|+.+++.+   +||||+++++++.. 
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~----~~aiK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~   74 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGH----FVALKSVRVQTNED--GLPLSTVREVALLKRLEAFDHPNIVRLMDVCATS   74 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCc----EEEEEEeccCcCCC--CCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccc
Confidence            58999999999999999999987554    49999987543211  1122334466666655   69999999998864 


Q ss_pred             ----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           95 ----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        95 ----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                          ...++++|||+.+ +|..++.......+++.+++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||
T Consensus        75 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg  153 (288)
T cd07863          75 RTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFG  153 (288)
T ss_pred             cCCCCceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccC
Confidence                3468999999975 77777665544568999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.....                                                                .......|
T Consensus       154 ~~~~~~~~----------------------------------------------------------------~~~~~~~~  169 (288)
T cd07863         154 LARIYSCQ----------------------------------------------------------------MALTPVVV  169 (288)
T ss_pred             ccccccCc----------------------------------------------------------------ccCCCccc
Confidence            98654210                                                                11123468


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C-----------------------
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P-----------------------  305 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~-----------------------  305 (412)
                      |..|+|||++.+..++.++|||||||++|+|++|.+||.+.+..+.+.++....  +                       
T Consensus       170 ~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (288)
T cd07863         170 TLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRP  249 (288)
T ss_pred             cccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCc
Confidence            999999999999889999999999999999999999999887766655543210  0                       


Q ss_pred             ---CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 ---EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 ---~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                         ..+..+..+.+||.+||++||++|+    ++.+++.||||
T Consensus       250 ~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~~~l~hp~f  288 (288)
T cd07863         250 VQSVVPEIEESGAQLLLEMLTFNPHKRI----SAFRALQHPFF  288 (288)
T ss_pred             hHHhCcCcCHHHHHHHHHHhccCcccCC----CHHHHhcCCCC
Confidence               0124567789999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.9e-46  Score=370.37  Aligned_cols=253  Identities=25%  Similarity=0.425  Sum_probs=206.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||.||+|.+..++..    ||||++.+...  .......+.+|+.+++.++||||+++++++...
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~----vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~   95 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERN----VAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQ   95 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcE----EEEEEeCcccc--CchhHHHHHHHHHHHHhcCCCCccccceeeccc
Confidence            468999999999999999999998775544    99999975432  223345677899999999999999999988643


Q ss_pred             ------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           96 ------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        96 ------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                            ..+|+||||+.+ +|...+..    .+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        96 ~~~~~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Df  170 (364)
T cd07875          96 KSLEEFQDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDF  170 (364)
T ss_pred             ccccccCeEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeC
Confidence                  358999999976 45444432    3889999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++....                                                                ........
T Consensus       171 G~a~~~~~----------------------------------------------------------------~~~~~~~~  186 (364)
T cd07875         171 GLARTAGT----------------------------------------------------------------SFMMTPYV  186 (364)
T ss_pred             CCccccCC----------------------------------------------------------------CCcccCCc
Confidence            99964311                                                                01122457


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------CCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------PEF  307 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~~~  307 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+.+++...                      +.+
T Consensus       187 ~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (364)
T cd07875         187 VTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKY  266 (364)
T ss_pred             ccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCc
Confidence            8999999999999999999999999999999999999999988766655543211                      110


Q ss_pred             C---------------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          308 V---------------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       308 ~---------------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      .                     ..++.+++||.+||+.||.+|+    ++.++++||||..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~----t~~e~L~hp~~~~  323 (364)
T cd07875         267 AGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRI----SVDEALQHPYINV  323 (364)
T ss_pred             CCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCC----CHHHHhcCccccc
Confidence            0                     1235789999999999999999    7999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=2.8e-46  Score=364.99  Aligned_cols=256  Identities=26%  Similarity=0.427  Sum_probs=211.9

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|++++.||+|+||.||++.+..++..    +|+|++....   .......+.+|+++++.++|+||++++++|.
T Consensus         1 ~l~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~----~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   73 (333)
T cd06650           1 ELKDDDFEKISELGAGNGGVVFKVSHKPSGLI----MARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFY   73 (333)
T ss_pred             CcchhhhheeccccCCCCEEEEEEEECCCCcE----EEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCcccceeEEEE
Confidence            35678999999999999999999998875544    9999886542   2334556778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEcccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      +++.+|+||||+.||+|..++....  .+++..+..++.|++.||.|||+. +|+||||||+|||++.+|.+||+|||++
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~  151 (333)
T cd06650          74 SDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (333)
T ss_pred             ECCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcc
Confidence            9999999999999999988876543  489999999999999999999985 7999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      ..+...                                                                 .....+||.
T Consensus       152 ~~~~~~-----------------------------------------------------------------~~~~~~~~~  166 (333)
T cd06650         152 GQLIDS-----------------------------------------------------------------MANSFVGTR  166 (333)
T ss_pred             hhhhhh-----------------------------------------------------------------ccccCCCCc
Confidence            654210                                                                 112347899


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHH--------------------------------
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV--------------------------------  300 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i--------------------------------  300 (412)
                      .|+|||++.+..++.++|+|||||++|+|++|+.||...........+                                
T Consensus       167 ~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (333)
T cd06650         167 SYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSR  246 (333)
T ss_pred             cccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhccccc
Confidence            999999999988999999999999999999999999865443322111                                


Q ss_pred             ------------hcCC-CCC--CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          301 ------------LMKT-PEF--VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       301 ------------~~~~-~~~--~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                                  .... +..  ...+.++++||.+||++||++||    ++++++.|+||+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rp----t~~ell~h~~~~~  304 (333)
T cd06650         247 PPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERA----DLKQLMVHAFIKR  304 (333)
T ss_pred             ccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCc----CHHHHhhCHHHhc
Confidence                        1111 111  12457899999999999999999    6999999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=2.4e-46  Score=361.19  Aligned_cols=258  Identities=25%  Similarity=0.384  Sum_probs=209.6

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ..+++|++++.||+|+||+||+|+++.++.    .||+|+++.....   .....+.+|+++++.++|+||+++++++..
T Consensus         3 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   75 (309)
T cd07872           3 GKMETYIKLEKLGEGTYATVFKGRSKLTEN----LVALKEIRLEHEE---GAPCTAIREVSLLKDLKHANIVTLHDIVHT   75 (309)
T ss_pred             CCCCceEEEEEecccCCEEEEEEEecCCCC----eEEEEEeeccccC---CcchhHHHHHHHHHhCCCCCcceEEEEEee
Confidence            457899999999999999999999876544    4999999754321   123345679999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++..|+||||+.+ +|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.
T Consensus        76 ~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  153 (309)
T cd07872          76 DKSLTLVFEYLDK-DLKQYMDDC-GNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARA  153 (309)
T ss_pred             CCeEEEEEeCCCC-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcccccee
Confidence            9999999999975 676665443 34589999999999999999999999999999999999999999999999999864


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ....                                                               ........+|+.|
T Consensus       154 ~~~~---------------------------------------------------------------~~~~~~~~~~~~y  170 (309)
T cd07872         154 KSVP---------------------------------------------------------------TKTYSNEVVTLWY  170 (309)
T ss_pred             cCCC---------------------------------------------------------------ccccccccccccc
Confidence            3110                                                               0111234678999


Q ss_pred             ccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------C------
Q 042539          255 VSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------P------  305 (412)
Q Consensus       255 ~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~------  305 (412)
                      +|||++.+. .++.++|||||||++|+|++|++||.+.+..+....+....                      +      
T Consensus       171 ~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (309)
T cd07872         171 RPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQP  250 (309)
T ss_pred             cCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCc
Confidence            999998764 57899999999999999999999999877655544332110                      0      


Q ss_pred             ---CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          306 ---EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       306 ---~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                         ..+..+.++++||.+||+.||.+|+    +++|+++||||++.
T Consensus       251 ~~~~~~~~~~~~~~li~~~L~~dp~~R~----t~~e~l~h~~~~~~  292 (309)
T cd07872         251 LINHAPRLDTEGIELLTKFLQYESKKRI----SAEEAMKHAYFRSL  292 (309)
T ss_pred             hhhhccCCCHHHHHHHHHhccCChhhCC----CHHHHhcChhhhhc
Confidence               0123567899999999999999999    79999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=3.2e-46  Score=367.49  Aligned_cols=254  Identities=26%  Similarity=0.423  Sum_probs=204.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||.||+|.+..++.    .||||++.+...  .......+.+|+.+++.++|+||+++++++...
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   88 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDR----NVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQ   88 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCc----eEEEEEeCCccc--ChHHHHHHHHHHHHHHHhCCCchhceeeeeecc
Confidence            46899999999999999999999876544    499999975432  223455677899999999999999999998654


Q ss_pred             ------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           96 ------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        96 ------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                            ..+|+||||+.++ |...+..    .+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        89 ~~~~~~~~~~lv~e~~~~~-l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Df  163 (355)
T cd07874          89 KSLEEFQDVYLVMELMDAN-LCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDF  163 (355)
T ss_pred             ccccccceeEEEhhhhccc-HHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeC
Confidence                  3579999999764 4333322    3889999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++....                                                                .......+
T Consensus       164 g~~~~~~~----------------------------------------------------------------~~~~~~~~  179 (355)
T cd07874         164 GLARTAGT----------------------------------------------------------------SFMMTPYV  179 (355)
T ss_pred             cccccCCC----------------------------------------------------------------ccccCCcc
Confidence            99964311                                                                11122457


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC----------------------CCCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK----------------------TPEF  307 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~----------------------~~~~  307 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..++..                      .+.+
T Consensus       180 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (355)
T cd07874         180 VTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY  259 (355)
T ss_pred             ccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCcc
Confidence            899999999999999999999999999999999999999987755543332210                      0000


Q ss_pred             ---------------------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          308 ---------------------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       308 ---------------------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                                           ...+.++++||.+||..||++||    ++.|+++||||...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rp----s~~ell~hp~~~~~  317 (355)
T cd07874         260 AGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRI----SVDEALQHPYINVW  317 (355)
T ss_pred             ccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcC----CHHHHhcCcchhcc
Confidence                                 01235789999999999999999    69999999999743

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-47  Score=347.83  Aligned_cols=251  Identities=29%  Similarity=0.438  Sum_probs=211.6

Q ss_pred             ccCceee-eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           17 LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        17 ~~~y~~~-~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      .++|.+- ++||-|-.|+|-.|.++.++..    ||+|++..+         ..+++|+++.-... |||||+++++|++
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ek----fALKvL~Ds---------~KARrEVeLHw~~s~h~~iV~IidVyeN  126 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEK----FALKVLLDS---------PKARREVELHWMASGHPHIVSIIDVYEN  126 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhh----hHHHHHhcC---------HHHHhHhhhhhhhcCCCceEEeehhhhh
Confidence            3566554 5899999999999999987665    999998332         23455787766665 9999999998864


Q ss_pred             ----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC---CCEEEc
Q 042539           95 ----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS---GHVTLT  167 (412)
Q Consensus        95 ----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~---g~vkL~  167 (412)
                          ...+.+|||.++||+|.+.+..++...|+|.++..++.||+.|+.|||+.+|.||||||+|+|....   ..+||+
T Consensus       127 s~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLt  206 (400)
T KOG0604|consen  127 SYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLT  206 (400)
T ss_pred             hccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEec
Confidence                4579999999999999998888888889999999999999999999999999999999999999765   468999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+|+.-..                                                                .....+
T Consensus       207 DfGFAK~t~~----------------------------------------------------------------~~~L~T  222 (400)
T KOG0604|consen  207 DFGFAKETQE----------------------------------------------------------------PGDLMT  222 (400)
T ss_pred             ccccccccCC----------------------------------------------------------------CccccC
Confidence            9999985321                                                                122345


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH----HHHHHHHhcCCCCCCC-----CChHHHHHH
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPEFVG-----QRTALTDLI  318 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~----~~~~~~i~~~~~~~~~-----~~~~~~dli  318 (412)
                      -|-||.|.|||++-...|+..+|+||+||++|-|++|++||..+..    ..+..+|..+...|+.     .|++++|+|
T Consensus       223 Pc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlI  302 (400)
T KOG0604|consen  223 PCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLI  302 (400)
T ss_pred             CcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999976432    3356677777666654     578999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      ++||..+|++|+    |+++++.|||+.+.
T Consensus       303 R~LLkt~PteRl----TI~~~m~hpwi~~~  328 (400)
T KOG0604|consen  303 RKLLKTEPTERL----TIEEVMDHPWINQY  328 (400)
T ss_pred             HHHhcCCchhhe----eHHHhhcCchhccc
Confidence            999999999999    79999999999863

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=5.8e-46  Score=378.82  Aligned_cols=250  Identities=27%  Similarity=0.378  Sum_probs=196.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC------Cccceeee
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH------PFLPKLLG   90 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h------pnIv~l~~   90 (412)
                      .++|+++++||+|+||+||+|.+..++.    .||||++++...     .......|+++++.+.|      .+|+++++
T Consensus       128 ~~~y~i~~~lG~G~fg~V~~a~~~~~~~----~vAvK~i~~~~~-----~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~  198 (467)
T PTZ00284        128 TQRFKILSLLGEGTFGKVVEAWDRKRKE----YCAVKIVRNVPK-----YTRDAKIEIQFMEKVRQADPADRFPLMKIQR  198 (467)
T ss_pred             CCcEEEEEEEEeccCEEEEEEEEcCCCe----EEEEEEEecchh-----hHHHHHHHHHHHHHHhhcCcccCcceeeeEE
Confidence            4789999999999999999999877544    499999964321     12223446666666654      46899999


Q ss_pred             eEEeC-CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCC------
Q 042539           91 SLETD-EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSG------  162 (412)
Q Consensus        91 ~~~~~-~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g------  162 (412)
                      +|..+ .++|+||+++ |++|..++...  +.+++.+++.++.||+.||+|||+ .|||||||||+|||++.++      
T Consensus       199 ~~~~~~~~~~iv~~~~-g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~  275 (467)
T PTZ00284        199 YFQNETGHMCIVMPKY-GPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPV  275 (467)
T ss_pred             EEEcCCceEEEEEecc-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccc
Confidence            99765 5799999998 77776666543  359999999999999999999998 5999999999999998776      


Q ss_pred             ----------CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          163 ----------HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       163 ----------~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                                .+||+|||++....                                                        
T Consensus       276 ~~~~~~~~~~~vkl~DfG~~~~~~--------------------------------------------------------  299 (467)
T PTZ00284        276 TNRALPPDPCRVRICDLGGCCDER--------------------------------------------------------  299 (467)
T ss_pred             cccccCCCCceEEECCCCccccCc--------------------------------------------------------
Confidence                      49999999874321                                                        


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC------
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE------  306 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~------  306 (412)
                                .....++||+.|+|||++.+..|+.++|||||||++|||++|++||.+.+..+.+..+......      
T Consensus       300 ----------~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~  369 (467)
T PTZ00284        300 ----------HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWA  369 (467)
T ss_pred             ----------cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHH
Confidence                      1123568999999999999999999999999999999999999999987765544332211000      


Q ss_pred             -----------------------------------C--CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          307 -----------------------------------F--VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       307 -----------------------------------~--~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                                                         .  ...++.+.|||.+||++||++|+    +++|+++||||...
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~----ta~e~L~Hp~~~~~  444 (467)
T PTZ00284        370 GRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRL----NARQMTTHPYVLKY  444 (467)
T ss_pred             hhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCC----CHHHHhcCcccccc
Confidence                                               0  00134578999999999999999    79999999999853

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=3.4e-46  Score=369.76  Aligned_cols=257  Identities=23%  Similarity=0.336  Sum_probs=208.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC--
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE--   96 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~--   96 (412)
                      +|++++.||+|+||+||+|.+..++.    .||||++.+...  .....+++.+|+.+++.++|+||+++++++...+  
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   74 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGK----RVALKKMPNVFQ--NLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHID   74 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCC----EEEEEecccccc--chHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCcc
Confidence            58899999999999999999876544    499999865321  2233456778999999999999999999998776  


Q ss_pred             ---eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           97 ---FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        97 ---~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                         .+|+||||+. ++|...+..  ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus        75 ~~~~~~lv~e~~~-~~l~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~  151 (372)
T cd07853          75 PFEEIYVVTELMQ-SDLHKIIVS--PQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLAR  151 (372)
T ss_pred             ccceEEEEeeccc-cCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEecccccee
Confidence               8999999996 566655543  3459999999999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                              ........++|+.
T Consensus       152 ~~~~~--------------------------------------------------------------~~~~~~~~~~~~~  169 (372)
T cd07853         152 VEEPD--------------------------------------------------------------ESKHMTQEVVTQY  169 (372)
T ss_pred             ecccC--------------------------------------------------------------ccccCCCCCcCCC
Confidence            53110                                                              0011123468899


Q ss_pred             CccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-----------------------C---C-
Q 042539          254 YVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----------------------T---P-  305 (412)
Q Consensus       254 Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-----------------------~---~-  305 (412)
                      |+|||++.+. .++.++|||||||++|||++|++||.+.+..+.+..+...                       .   + 
T Consensus       170 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (372)
T cd07853         170 YRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPS  249 (372)
T ss_pred             cCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCc
Confidence            9999999875 4789999999999999999999999988766555444210                       0   0 


Q ss_pred             ------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          306 ------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       306 ------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                            .....++++.+||.+||+.||.+|+    ++.++++||||.+..+
T Consensus       250 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~----t~~e~l~hp~~~~~~~  296 (372)
T cd07853         250 LPVLYTLSSQATHEAVHLLCRMLVFDPDKRI----SAADALAHPYLDEGRL  296 (372)
T ss_pred             hHHhcccCCCCCHHHHHHHHHhCCCChhhCc----CHHHHhcCHhhCCCcc
Confidence                  0123467899999999999999999    6999999999998654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=6e-46  Score=379.49  Aligned_cols=260  Identities=24%  Similarity=0.386  Sum_probs=219.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ...|++.+.||+|+||.||+|.+..+.   +..||+|.+....    ......+.+|+.+++.++|||||++++++..++
T Consensus        66 ~~~y~~~~~lg~G~~g~vy~a~~~~~~---~~~vv~K~~~~~~----~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~  138 (478)
T PTZ00267         66 EHMYVLTTLVGRNPTTAAFVATRGSDP---KEKVVAKFVMLND----ERQAAYARSELHCLAACDHFGIVKHFDDFKSDD  138 (478)
T ss_pred             ceeEEEEEEEEeCCCcEEEEEEEcCCC---CeEEEEEEcccCC----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECC
Confidence            445999999999999999999876541   3348888774432    233456677999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .+|+|||||.||+|..++...  ....+++.++..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.
T Consensus       139 ~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~  218 (478)
T PTZ00267        139 KLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQ  218 (478)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCcee
Confidence            999999999999998776532  334589999999999999999999999999999999999999999999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +....                                                             ......+.+||+.|
T Consensus       219 ~~~~~-------------------------------------------------------------~~~~~~~~~gt~~y  237 (478)
T PTZ00267        219 YSDSV-------------------------------------------------------------SLDVASSFCGTPYY  237 (478)
T ss_pred             cCCcc-------------------------------------------------------------ccccccccCCCccc
Confidence            42110                                                             01123456899999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      +|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..++.+...  ....++++.+||.+||..||++||  
T Consensus       238 ~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp--  315 (478)
T PTZ00267        238 LAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRP--  315 (478)
T ss_pred             cCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCc--
Confidence            9999999999999999999999999999999999998888888877654432  235678999999999999999999  


Q ss_pred             CCChhhhhcCCCCCCC
Q 042539          333 LRGACEIKEHVFFKGV  348 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~  348 (412)
                        ++++++.|+|++.+
T Consensus       316 --s~~~~l~~~~~~~~  329 (478)
T PTZ00267        316 --TTQQLLHTEFLKYV  329 (478)
T ss_pred             --CHHHHHhCHHHHHH
Confidence              69999999998643

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.4e-46  Score=365.45  Aligned_cols=253  Identities=25%  Similarity=0.423  Sum_probs=206.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .++|++++.||+|+||+||+|.+..++.    .||||++.+....  ......+.+|+.+++.++|+||+++++++... 
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   87 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQ----KVAVKKLSRPFQS--LIHARRTYRELRLLKHMKHENVIGLLDVFTPAT   87 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCC----EEEEEEeCchhhh--hHHHHHHHHHHHHHHhcCCCchhhhhhhhcccc
Confidence            4789999999999999999999877544    4999999765321  22344566799999999999999999988643 


Q ss_pred             -----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           96 -----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        96 -----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                           ..+|++|+++ |++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||
T Consensus        88 ~~~~~~~~~~~~~~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg  163 (343)
T cd07878          88 SIENFNEVYLVTNLM-GADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFG  163 (343)
T ss_pred             cccccCcEEEEeecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCc
Confidence                 3579999998 7888766542   359999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++....                                                                  .....+|
T Consensus       164 ~~~~~~~------------------------------------------------------------------~~~~~~~  177 (343)
T cd07878         164 LARQADD------------------------------------------------------------------EMTGYVA  177 (343)
T ss_pred             cceecCC------------------------------------------------------------------CcCCccc
Confidence            9864311                                                                  1124578


Q ss_pred             CCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------------------CC
Q 042539          251 TEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----------------------PE  306 (412)
Q Consensus       251 t~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----------------------~~  306 (412)
                      |+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+.+..+....                       +.
T Consensus       178 t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (343)
T cd07878         178 TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPH  257 (343)
T ss_pred             cccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhcccc
Confidence            999999999987 467899999999999999999999999877655544432110                       00


Q ss_pred             ---------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          307 ---------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       307 ---------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                               +...++.+.+||.+||+.||.+|+    ++.++++||||....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~----s~~ell~hp~~~~~~  305 (343)
T cd07878         258 MPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRI----SASEALAHPYFSQYH  305 (343)
T ss_pred             ccchhHHHhccCCCHHHHHHHHHHcCCChhhCC----CHHHHhcCcchhccC
Confidence                     113456688999999999999999    699999999998643

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.3e-46  Score=363.90  Aligned_cols=262  Identities=22%  Similarity=0.321  Sum_probs=206.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ++.+..++|++.++||+|+||.||+|.+...+ ..++..||+|+++....   ......+.+|+.+++.+ +||||++++
T Consensus         1 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~niv~~~   77 (338)
T cd05102           1 QWEFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT---ASEHKALMSELKILIHIGNHLNVVNLL   77 (338)
T ss_pred             CcccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc---hHHHHHHHHHHHHHHHhccCcceeeEE
Confidence            35677899999999999999999999864432 22345699999965421   22345677899999999 799999999


Q ss_pred             eeEEeC-CeEEEEeeccCCCCchhHHHhhC--------------------------------------------------
Q 042539           90 GSLETD-EFLAWAVPYCPGGDLNVLRYKQN--------------------------------------------------  118 (412)
Q Consensus        90 ~~~~~~-~~~~lv~e~~~gg~L~~~~~~~~--------------------------------------------------  118 (412)
                      +++... ..+|+|||||.||+|..++....                                                  
T Consensus        78 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T cd05102          78 GACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGST  157 (338)
T ss_pred             eEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCccc
Confidence            988754 46899999999999988876432                                                  


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccC
Q 042539          119 ----------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN  188 (412)
Q Consensus       119 ----------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~  188 (412)
                                ...+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.+.....        
T Consensus       158 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~--------  229 (338)
T cd05102         158 NPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD--------  229 (338)
T ss_pred             ccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcc--------
Confidence                      12377888999999999999999999999999999999999999999999999975421100        


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCch
Q 042539          189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFA  268 (412)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~  268 (412)
                                                                           .....+..+++.|+|||++.+..++.+
T Consensus       230 -----------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~  256 (338)
T cd05102         230 -----------------------------------------------------YVRKGSARLPLKWMAPESIFDKVYTTQ  256 (338)
T ss_pred             -----------------------------------------------------hhcccCCCCCccccCcHHhhcCCCCcc
Confidence                                                                 011123346788999999999889999


Q ss_pred             hhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--C-CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          269 VDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--P-EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       269 ~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~-~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +|||||||++|||++ |..||.+....+.+...+...  + .....++++.+||.+||..||.+||    ++.++++
T Consensus       257 sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RP----s~~el~~  329 (338)
T cd05102         257 SDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERP----TFSALVE  329 (338)
T ss_pred             cCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCc----CHHHHHH
Confidence            999999999999997 999998865444333333222  1 1234578899999999999999999    5777764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=3.9e-45  Score=352.11  Aligned_cols=294  Identities=35%  Similarity=0.614  Sum_probs=232.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||.||++.+..++.    .||+|.+.+..... ......+.+|+.+++.++|+||+++++.+..++.
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~----~v~ik~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   75 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQ----RFAMKKINKQNLIL-RNQIQQVFVERDILTFAENPFVVSMFCSFETKRH   75 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCc----EEEEEEeehhhhhh-HHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCE
Confidence            579999999999999999999877544    49999997664322 2334567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.|++|..++...  +.+++..+..++.|++.||.|||++|++||||||+||+++.+|.+||+|||+++....
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~  153 (305)
T cd05609          76 LCMVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLM  153 (305)
T ss_pred             EEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCc
Confidence            99999999999998887654  3589999999999999999999999999999999999999999999999999864211


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ....   ....                              .....           .    ..........|+..|+||
T Consensus       154 ~~~~---~~~~------------------------------~~~~~-----------~----~~~~~~~~~~~~~~y~aP  185 (305)
T cd05609         154 SLTT---NLYE------------------------------GHIEK-----------D----TREFLDKQVCGTPEYIAP  185 (305)
T ss_pred             Cccc---cccc------------------------------ccccc-----------c----hhhccccCCccCccccCc
Confidence            0000   0000                              00000           0    000111235688999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC----CCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV----GQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~----~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |.+.+..++.++|+|||||++|+|++|..||.+.+..+....+.......+    ..+.++.++|.+||..||++|+++.
T Consensus       186 E~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~  265 (305)
T cd05609         186 EVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTG  265 (305)
T ss_pred             hhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhccCcc
Confidence            999888899999999999999999999999999888777777665433222    4578899999999999999999752


Q ss_pred             CChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          334 RGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                       ++.++++||||...+|....... ..++|..+..
T Consensus       266 -~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~  298 (305)
T cd05609         266 -GAFEVKQHRFFLGLDWNGLLRQK-AEFIPQLESE  298 (305)
T ss_pred             -CHHHHHhCccccCCCHHHHhhcC-CCCCCCCCCc
Confidence             58999999999999998766543 3566665443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=8.9e-46  Score=351.45  Aligned_cols=269  Identities=38%  Similarity=0.665  Sum_probs=220.6

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||+|+||+||+|.+..++..    ||+|++.+...... .....+..|+.+++.++||||+++++++...+.+|+||||+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~----~~ik~~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKM----YACKKLDKKRLKKR-KGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLM   75 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcE----EEEEEEehhhhhhh-hhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecC
Confidence            69999999999998875544    99999976554322 23455667999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhc
Q 042539          106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS  185 (412)
Q Consensus       106 ~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~  185 (412)
                      .|++|..++.......+++.++..++.|++.||.|||++|++||||+|+||+++.++.+||+|||++.....        
T Consensus        76 ~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~--------  147 (277)
T cd05577          76 NGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKG--------  147 (277)
T ss_pred             CCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhcc--------
Confidence            999998888766545699999999999999999999999999999999999999999999999998865421        


Q ss_pred             ccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCC
Q 042539          186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  265 (412)
                                                                              ........++..|+|||.+.+..+
T Consensus       148 --------------------------------------------------------~~~~~~~~~~~~y~~PE~~~~~~~  171 (277)
T cd05577         148 --------------------------------------------------------GKKIKGRAGTPGYMAPEVLQGEVY  171 (277)
T ss_pred             --------------------------------------------------------CCccccccCCCCcCCHHHhcCCCC
Confidence                                                                    011123357889999999988889


Q ss_pred             CchhhHHHHHHHHHHHhhCCCCCCCCCH----HHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCCCC-Chhhh
Q 042539          266 EFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLR-GACEI  339 (412)
Q Consensus       266 ~~~~DiwSlGvil~ell~g~~Pf~~~~~----~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~~-~~~e~  339 (412)
                      +.++|+|||||++|+|++|+.||.....    ......+....... ...++.+.++|.+||+.||.+|+++.. ++.++
T Consensus       172 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l  251 (277)
T cd05577         172 DFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEV  251 (277)
T ss_pred             CchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHH
Confidence            9999999999999999999999987543    22222222222222 346789999999999999999998877 89999


Q ss_pred             hcCCCCCCCCchhhcc-cCCCCCCC
Q 042539          340 KEHVFFKGVRWDLLTD-VLRPPFIP  363 (412)
Q Consensus       340 l~h~ff~~~~~~~~~~-~~~pp~~p  363 (412)
                      ++||||...+|..... ...|||.+
T Consensus       252 l~h~~~~~~~~~~~~~~~~~~~~~~  276 (277)
T cd05577         252 REHPLFKDLNWRRLEAGMLEPPFIP  276 (277)
T ss_pred             HhChhhhcCChhhhhcCCCCCCCCC
Confidence            9999999999986644 34566654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=7.9e-46  Score=379.51  Aligned_cols=266  Identities=26%  Similarity=0.402  Sum_probs=223.2

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +.....++|++.+.||+|+||+||+|++..++.    .||||++......  ......+.+|+.++..++|+||+++++.
T Consensus        26 ~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~----~vAvK~i~~~~~~--~~~~~~~~~Ei~~l~~~~h~~iv~~~~~   99 (496)
T PTZ00283         26 TAKEQAKKYWISRVLGSGATGTVLCAKRVSDGE----PFAVKVVDMEGMS--EADKNRAQAEVCCLLNCDFFSIVKCHED   99 (496)
T ss_pred             cccccCCCEEEEEEEecCCCEEEEEEEEcCCCC----EEEEEEEecccCC--HHHHHHHHHHHHHHhcCCCCcEEEeecc
Confidence            445566899999999999999999999877554    4999999765442  2345567789999999999999999988


Q ss_pred             EEeCC--------eEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           92 LETDE--------FLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        92 ~~~~~--------~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      +...+        .+++||||+.||+|..++...  ....+++..+..++.|++.||.|||++||+||||||+|||++.+
T Consensus       100 ~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~  179 (496)
T PTZ00283        100 FAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSN  179 (496)
T ss_pred             eecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCC
Confidence            75432        378999999999998877543  23468999999999999999999999999999999999999999


Q ss_pred             CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          162 GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       162 g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      +.+||+|||+++.+...                                                             ..
T Consensus       180 ~~vkL~DFGls~~~~~~-------------------------------------------------------------~~  198 (496)
T PTZ00283        180 GLVKLGDFGFSKMYAAT-------------------------------------------------------------VS  198 (496)
T ss_pred             CCEEEEecccCeecccc-------------------------------------------------------------cc
Confidence            99999999999764211                                                             00


Q ss_pred             CCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHH
Q 042539          242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQ  319 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~  319 (412)
                      .....+.+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+.+..+.....  .....++++.+||.
T Consensus       199 ~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  278 (496)
T PTZ00283        199 DDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISPEMQEIVT  278 (496)
T ss_pred             ccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Confidence            1122356899999999999999999999999999999999999999999888888777765432  23456889999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      +||..||.+||    ++.++++|||++..
T Consensus       279 ~~L~~dP~~RP----s~~ell~~p~~~~~  303 (496)
T PTZ00283        279 ALLSSDPKRRP----SSSKLLNMPICKLF  303 (496)
T ss_pred             HHcccChhhCc----CHHHHHhCHHHHHh
Confidence            99999999999    68999999998754

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-47  Score=346.54  Aligned_cols=263  Identities=28%  Similarity=0.427  Sum_probs=218.1

Q ss_pred             Cceee-eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCC
Q 042539           19 NLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDE   96 (412)
Q Consensus        19 ~y~~~-~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~   96 (412)
                      -|++. +.||+|+|+.|--|....++..    ||||+|.|..-    -...++.||++++.+++ |+||++|+++|++++
T Consensus        78 ~YkLt~e~LGeGAyasVqtcv~i~t~~E----YAVKiidKq~g----HsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~  149 (463)
T KOG0607|consen   78 MYKLTSELLGEGAYASVQTCVSIQTGKE----YAVKIIDKQPG----HSRSRVFREVETFYQCQGHKNILQLIEFFEDDT  149 (463)
T ss_pred             HHHhHHHHhcCccceeeeeeeeeccchh----hhhhhhhcCCc----hHHHHHHHHHHHHHHhcCCccHHHHHHHhcccc
Confidence            34443 5799999999999888776655    99999988643    34677888999999997 999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC---EEEccccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSR  173 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~---vkL~DFGla~  173 (412)
                      .+|||||.+.||.|...+..+.  .|+|.+|..++..|+.||.|||.+||.||||||+|||..+-++   ||||||.++.
T Consensus       150 ~FYLVfEKm~GGplLshI~~~~--~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgS  227 (463)
T KOG0607|consen  150 RFYLVFEKMRGGPLLSHIQKRK--HFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGS  227 (463)
T ss_pred             eEEEEEecccCchHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeecccccc
Confidence            9999999999999977776655  4999999999999999999999999999999999999976654   7999999886


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.....                                              .+  |        .......+-||+..
T Consensus       228 g~k~~~~----------------------------------------------~s--p--------astP~L~tPvGSAE  251 (463)
T KOG0607|consen  228 GIKLNND----------------------------------------------CS--P--------ASTPELLTPVGSAE  251 (463)
T ss_pred             ccccCCC----------------------------------------------CC--C--------CCCccccCcccchh
Confidence            5422111                                              00  0        11122346699999


Q ss_pred             Cccceeec---C--CCCCchhhHHHHHHHHHHHhhCCCCCCCCC---------------HHHHHHHHhcCCCCCCC----
Q 042539          254 YVSPEVVR---G--DGHEFAVDWWALGILTYEMLYGTTPFRGKN---------------RKETFRNVLMKTPEFVG----  309 (412)
Q Consensus       254 Y~APE~l~---~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---------------~~~~~~~i~~~~~~~~~----  309 (412)
                      |||||++.   +  ..|++++|.||||||||-||.|++||.|.-               ...+|..|..+..+|++    
T Consensus       252 fMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWa  331 (463)
T KOG0607|consen  252 FMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWA  331 (463)
T ss_pred             hcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhH
Confidence            99999863   3  357999999999999999999999998742               34578888888887775    


Q ss_pred             -CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          310 -QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       310 -~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                       ++.+++|+|+.+|.+|+..|+    .+.++++|||++.+..+
T Consensus       332 hIS~eakdlisnLlvrda~~rl----sa~~vlnhPw~~~~~~e  370 (463)
T KOG0607|consen  332 HISSEAKDLISNLLVRDAKQRL----SAAQVLNHPWVQRCAPE  370 (463)
T ss_pred             HhhHHHHHHHHHHHhccHHhhh----hhhhccCCccccccchh
Confidence             579999999999999999999    58999999999987654

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-46  Score=371.44  Aligned_cols=262  Identities=28%  Similarity=0.442  Sum_probs=233.7

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..+.....|.++++||+|.|++|.++++..++..    ||||.|+|..++..  ..+.+.+|+++|+.|+|||||+++.+
T Consensus        50 ~~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~----VaiK~idkt~ln~~--~~~k~~rev~imk~l~HPnIvkl~~v  123 (596)
T KOG0586|consen   50 DDSNSVGLYVIIKTIGKGNFAKVKLARHILTGTE----VAIKIIDKTQLNPS--KRQKLGREVDIMKSLNHPNIVKLFSV  123 (596)
T ss_pred             cccccccceeeeeeeccceeEEEEeeEecCCCce----EEEEEehhcccChH--HHHHHHHHHHHHHhcCCcceeeeeee
Confidence            5567788999999999999999999999887665    99999999876443  33447889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .++...+|+||||+.||++.+++....  ++.+..++.++.|++.|++|||+++|||||||++|||++.+-++||+|||+
T Consensus       124 ~~t~~~lylV~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgf  201 (596)
T KOG0586|consen  124 IETEATLYLVMEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGF  201 (596)
T ss_pred             eeecceeEEEEEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeecccc
Confidence            999999999999999999988887654  488899999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      +..+                                                                +.+....++||+
T Consensus       202 S~~~----------------------------------------------------------------~~~~~lqt~cgs  217 (596)
T KOG0586|consen  202 STFF----------------------------------------------------------------DYGLMLQTFCGS  217 (596)
T ss_pred             ceee----------------------------------------------------------------cccccccccCCC
Confidence            9765                                                                344556789999


Q ss_pred             CCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCcc
Q 042539          252 EEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       252 ~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R  329 (412)
                      +.|.|||++.|..| +..+|+||+|++||.|+.|..||.|.+..+...+.+.+....+. .+.++.++|+++|..+|.+|
T Consensus       218 ppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr  297 (596)
T KOG0586|consen  218 PPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKR  297 (596)
T ss_pred             CCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccceeechhHHHHHHhhccCcccc
Confidence            99999999999988 78999999999999999999999999988888777776655544 46789999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~~  349 (412)
                      .    +.+++..|.|.....
T Consensus       298 ~----~~dqim~~~W~n~~~  313 (596)
T KOG0586|consen  298 G----PCDQIMKDRWRNDLL  313 (596)
T ss_pred             C----CHHHhhhhcccchhh
Confidence            9    689999999987543

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-46  Score=365.34  Aligned_cols=251  Identities=21%  Similarity=0.345  Sum_probs=216.8

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ...+++..+.+++++.||+|-||.||+++++....     ||+|.++...+.     ...+.+|+++|++|+|+|||+++
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~-----vavk~ik~~~m~-----~~~f~~Ea~iMk~L~H~~lV~l~  267 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTK-----VAVKTIKEGSMS-----PEAFLREAQIMKKLRHEKLVKLY  267 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCc-----ccceEEeccccC-----hhHHHHHHHHHHhCcccCeEEEE
Confidence            34567888899999999999999999999986533     899999765432     23455799999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++..++.+||||||+..|+|.+++.......+...+...++.|||.|++||+++++|||||...|||+++++.+||+||
T Consensus       268 gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDF  347 (468)
T KOG0197|consen  268 GVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDF  347 (468)
T ss_pred             EEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEccc
Confidence            99999999999999999999999998866778999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |||+.+. ..+|..+  ..+                                       +                    
T Consensus       348 GLAr~~~-d~~Y~~~--~~~---------------------------------------k--------------------  365 (468)
T KOG0197|consen  348 GLARLIG-DDEYTAS--EGG---------------------------------------K--------------------  365 (468)
T ss_pred             ccccccC-CCceeec--CCC---------------------------------------C--------------------
Confidence            9999432 2222110  001                                       1                    


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      -..-|.|||.+....++.+||||||||+||||+| |+.||.+.+..++++.+-.+.  +....+++.+.+++..||..+|
T Consensus       366 fPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P  445 (468)
T KOG0197|consen  366 FPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDP  445 (468)
T ss_pred             CCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCc
Confidence            1235999999999999999999999999999997 999999999999999988654  6667899999999999999999


Q ss_pred             CccCCC
Q 042539          327 VKRLGY  332 (412)
Q Consensus       327 ~~R~~~  332 (412)
                      ++||+|
T Consensus       446 ~~RPtF  451 (468)
T KOG0197|consen  446 EDRPTF  451 (468)
T ss_pred             ccCCCH
Confidence            999976

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.9e-45  Score=366.96  Aligned_cols=261  Identities=23%  Similarity=0.302  Sum_probs=209.1

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ...+|++++.||+|+||.||+|......  .+..||+|.+.+..         ...+|++++++++|+|||++++++..+
T Consensus        90 ~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~--~~~~v~vK~~~~~~---------~~~~E~~il~~l~h~~iv~~~~~~~~~  158 (392)
T PHA03207         90 VRMQYNILSSLTPGSEGEVFVCTKHGDE--QRKKVIVKAVTGGK---------TPGREIDILKTISHRAIINLIHAYRWK  158 (392)
T ss_pred             ccCceEEEEeecCCCCeEEEEEEEcCCc--cceeEEEEeccccc---------cHHHHHHHHHhcCCCCccceeeeEeeC
Confidence            3457999999999999999999765322  45569999885432         233599999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ..+|+|||++. ++|..++..  ...+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.+
T Consensus       159 ~~~~lv~e~~~-~~l~~~l~~--~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~  235 (392)
T PHA03207        159 STVCMVMPKYK-CDLFTYVDR--SGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKL  235 (392)
T ss_pred             CEEEEEehhcC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCcccccc
Confidence            99999999995 567666633  345999999999999999999999999999999999999999999999999999754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ....                                                             ........+||+.|+
T Consensus       236 ~~~~-------------------------------------------------------------~~~~~~~~~gt~~y~  254 (392)
T PHA03207        236 DAHP-------------------------------------------------------------DTPQCYGWSGTLETN  254 (392)
T ss_pred             Cccc-------------------------------------------------------------ccccccccccccCcc
Confidence            2110                                                             011123467999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH---HHHHHHHhcC---------------------------CC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR---KETFRNVLMK---------------------------TP  305 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~~~~~i~~~---------------------------~~  305 (412)
                      |||++.+..++.++|||||||++|||++|+.||.+...   ...+..++..                           .+
T Consensus       255 aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (392)
T PHA03207        255 SPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRP  334 (392)
T ss_pred             CHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccC
Confidence            99999999999999999999999999999999976431   2222222110                           00


Q ss_pred             CC--------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcc
Q 042539          306 EF--------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD  355 (412)
Q Consensus       306 ~~--------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~  355 (412)
                      .+        ...+.++.+||.+||..||.+||    ++.+++.||||....|+.++.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rp----sa~e~l~~p~f~~~~~~~~~~  388 (392)
T PHA03207        335 PYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRP----SAQDILSLPLFTKEPINLLNI  388 (392)
T ss_pred             CccccchhhccCcchhHHHHHHHHhccChhhCC----CHHHHhhCchhhccchhhhcC
Confidence            00        12346788999999999999999    799999999999988887653

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=3e-45  Score=352.12  Aligned_cols=259  Identities=25%  Similarity=0.366  Sum_probs=209.9

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ..+++|++++.||+|+||.||+|+++.++.    .||+|.++.....   .....+.+|+.+++.++|+||+++++++..
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~----~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~   75 (301)
T cd07873           3 GKLETYIKLDKLGEGTYATVYKGRSKLTDN----LVALKEIRLEHEE---GAPCTAIREVSLLKDLKHANIVTLHDIIHT   75 (301)
T ss_pred             ccccceEEeeEeccCcCEEEEEEEEcCCCc----EEEEEEEeccccc---CchhHHHHHHHHHHhcCCCCcceEEEEEec
Confidence            467899999999999999999999876544    4999998654321   123345679999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.+|+||||+. ++|..++... ...+++..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++..
T Consensus        76 ~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~  153 (301)
T cd07873          76 EKSLTLVFEYLD-KDLKQYLDDC-GNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARA  153 (301)
T ss_pred             CCeEEEEEeccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhc
Confidence            999999999997 4776666543 33589999999999999999999999999999999999999999999999999864


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ....                                                               ........+++.|
T Consensus       154 ~~~~---------------------------------------------------------------~~~~~~~~~~~~y  170 (301)
T cd07873         154 KSIP---------------------------------------------------------------TKTYSNEVVTLWY  170 (301)
T ss_pred             cCCC---------------------------------------------------------------CCcccccceeecc
Confidence            3110                                                               0011123578899


Q ss_pred             ccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------CC-----
Q 042539          255 VSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------PE-----  306 (412)
Q Consensus       255 ~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~~-----  306 (412)
                      +|||++.+. .++.++|||||||++|+|++|++||.+.+..+....+....                      +.     
T Consensus       171 ~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T cd07873         171 RPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADC  250 (301)
T ss_pred             cCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCcccccc
Confidence            999998764 46889999999999999999999999887665544332110                      00     


Q ss_pred             ----CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          307 ----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       307 ----~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                          ....++.+++||.+||+.||.+|+    +++++++||||....
T Consensus       251 ~~~~~~~~~~~~~~li~~ml~~dp~~R~----t~~eil~h~~f~~~~  293 (301)
T cd07873         251 LHNHAPRLDSDGAELLSKLLQFEGRKRI----SAEEAMKHPYFHCLG  293 (301)
T ss_pred             HHhhcCCCCHHHHHHHHHHhcCCcccCc----CHHHHhcCccccccc
Confidence                123567899999999999999999    699999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-47  Score=371.19  Aligned_cols=257  Identities=27%  Similarity=0.450  Sum_probs=219.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +-|.|+..||.|+||+||+|..+.++.    ..|-|+|....    .+....++-||.||..++||+||+|++.|..++.
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~----lAAaKvIetks----eEELEDylVEIeILa~CdHP~ivkLl~ayy~enk  103 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKL----LAAAKVIETKS----EEELEDYLVEIEILAECDHPVIVKLLSAYYFENK  103 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchh----hhhhhhhcccc----hhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCc
Confidence            457899999999999999988876544    47889985432    2334445569999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      ++|+.|||.||-.+..+..- ...|++.+++.+++|+|.||.|||+++|||||||..|||++.+|.++|+|||.+.....
T Consensus       104 LwiliEFC~GGAVDaimlEL-~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~  182 (1187)
T KOG0579|consen  104 LWILIEFCGGGAVDAIMLEL-GRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKS  182 (1187)
T ss_pred             eEEEEeecCCchHhHHHHHh-ccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchh
Confidence            99999999999987665543 35699999999999999999999999999999999999999999999999998754311


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     .-....+|+|||+||||
T Consensus       183 ---------------------------------------------------------------t~qkRDsFIGTPYWMAP  199 (1187)
T KOG0579|consen  183 ---------------------------------------------------------------TRQKRDSFIGTPYWMAP  199 (1187)
T ss_pred             ---------------------------------------------------------------HHhhhccccCCcccccc
Confidence                                                                           12345689999999999


Q ss_pred             eeec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC----CCChHHHHHHHHhhhhCCCc
Q 042539          258 EVVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV----GQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       258 E~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~----~~~~~~~dli~~~L~~dP~~  328 (412)
                      |++.     ..+|+.++||||||++|.||..+.+|-...+...++-+|....|+..    .++..+.||+.+||.+||..
T Consensus       200 EVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~  279 (1187)
T KOG0579|consen  200 EVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRN  279 (1187)
T ss_pred             hheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCcc
Confidence            9874     46899999999999999999999999999999988888887665432    34578999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCCc
Q 042539          329 RLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      ||    ++.++++||||.++.-
T Consensus       280 Rp----~aaqll~Hpfv~~~~S  297 (1187)
T KOG0579|consen  280 RP----PAAQLLKHPFVQNAPS  297 (1187)
T ss_pred             CC----CHHHHhhCcccccCCc
Confidence            99    6999999999997754

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.5e-44  Score=338.39  Aligned_cols=254  Identities=25%  Similarity=0.421  Sum_probs=213.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-CCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-DEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-~~~   97 (412)
                      +|++++.||+|+||.||++.++.++.    .||+|.+......  ......+.+|+.++++++|+||+++++.+.. +..
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~----~~~~k~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGK----QYVIKKLNLRNAS--RRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGL   74 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCc----EEEEEEEehhhcC--HHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCE
Confidence            58999999999999999999876544    4999999665432  2234557779999999999999999998874 446


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|++|||+.|++|..++.......+++.++..++.|++.||.|||++||+||||||+||+++.++.++|+|||++..+..
T Consensus        75 ~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~  154 (257)
T cd08223          75 LYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLEN  154 (257)
T ss_pred             EEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecc
Confidence            89999999999998887765555689999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........|++.|+||
T Consensus       155 ~---------------------------------------------------------------~~~~~~~~~~~~y~aP  171 (257)
T cd08223         155 Q---------------------------------------------------------------CDMASTLIGTPYYMSP  171 (257)
T ss_pred             c---------------------------------------------------------------CCccccccCCcCccCh
Confidence            0                                                               0112245689999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-C-CCCCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-E-FVGQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~-~~~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      |++.+..++.++|+|||||++|+|++|+.||.+.+.......+..... . ....++.+.+||.+||+.||.+||    +
T Consensus       172 E~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----~  247 (257)
T cd08223         172 ELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRP----S  247 (257)
T ss_pred             hHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHhccCcccCC----C
Confidence            999998889999999999999999999999998877666555554332 2 234678999999999999999999    6


Q ss_pred             hhhhhcCCCC
Q 042539          336 ACEIKEHVFF  345 (412)
Q Consensus       336 ~~e~l~h~ff  345 (412)
                      +.++++||||
T Consensus       248 ~~~~l~~~~~  257 (257)
T cd08223         248 VKSILRQPYI  257 (257)
T ss_pred             HHHHhcCCCC
Confidence            9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.2e-44  Score=346.35  Aligned_cols=260  Identities=28%  Similarity=0.470  Sum_probs=216.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      -+.|+++++||+|+||.||++++..++.    .||+|++....    ......+.+|+.+++.++|+||+++++++..+.
T Consensus        11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~----~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   82 (292)
T cd06644          11 NEVWEIIGELGDGAFGKVYKAKNKETGA----LAAAKVIETKS----EEELEDYMVEIEILATCNHPYIVKLLGAFYWDG   82 (292)
T ss_pred             chhhhhhheecCCCCeEEEEEEECCCCc----eEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC
Confidence            3679999999999999999999877554    49999986542    233556677999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+||||+.|++|..++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.+|.+||+|||++....
T Consensus        83 ~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~  161 (292)
T cd06644          83 KLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNV  161 (292)
T ss_pred             eEEEEEecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceecc
Confidence            9999999999999977654433 458999999999999999999999999999999999999999999999999886431


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                               .........|++.|+|
T Consensus       162 ~---------------------------------------------------------------~~~~~~~~~~~~~y~a  178 (292)
T cd06644         162 K---------------------------------------------------------------TLQRRDSFIGTPYWMA  178 (292)
T ss_pred             c---------------------------------------------------------------cccccceecCCccccC
Confidence            1                                                               0111224568889999


Q ss_pred             ceeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCC
Q 042539          257 PEVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       257 PE~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~  327 (412)
                      ||++.+     ..++.++|+|||||++|+|++|.+||...+......++......    ....+.++.++|.+||..||+
T Consensus       179 PE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  258 (292)
T cd06644         179 PEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPE  258 (292)
T ss_pred             ceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcc
Confidence            999853     34678999999999999999999999887766666555443221    224567899999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCCchh
Q 042539          328 KRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                      +||    +++++++||||..++|..
T Consensus       259 ~Rp----~~~~il~~~~~~~~~~~~  279 (292)
T cd06644         259 TRP----SAAQLLEHPFVSSVTSNR  279 (292)
T ss_pred             cCc----CHHHHhcCccccccccch
Confidence            999    699999999999988764

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-44  Score=339.55  Aligned_cols=258  Identities=28%  Similarity=0.431  Sum_probs=213.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh-hHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA-KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ++|++.+.||+|+||.||+|.+..++.    .||+|++....... .......+.+|+.++++++||||+++++++.+++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~----~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   77 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGR----ELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE   77 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCc----EEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC
Confidence            579999999999999999998876444    49999987654321 1223456778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+||||+.|++|.+++....  .+++..++.++.|++.||.|||+.||+||||||+||+++.++.++|+|||+++...
T Consensus        78 ~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~  155 (263)
T cd06625          78 TLSIFMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ  155 (263)
T ss_pred             eEEEEEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecc
Confidence            9999999999999988776543  48999999999999999999999999999999999999999999999999987542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ....                                                            .........|+..|+|
T Consensus       156 ~~~~------------------------------------------------------------~~~~~~~~~~~~~y~a  175 (263)
T cd06625         156 TICS------------------------------------------------------------SGTGMKSVTGTPYWMS  175 (263)
T ss_pred             cccc------------------------------------------------------------ccccccCCCcCccccC
Confidence            1100                                                            0001123468889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCC-CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEF-VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~-~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ||++.+..++.++|||||||++|+|++|+.||...+......++....  +.. ...+..+.++|.+||..+|.+||   
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---  252 (263)
T cd06625         176 PEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRP---  252 (263)
T ss_pred             cceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCC---
Confidence            999999889999999999999999999999998876666555544332  222 24578999999999999999999   


Q ss_pred             CChhhhhcCCCC
Q 042539          334 RGACEIKEHVFF  345 (412)
Q Consensus       334 ~~~~e~l~h~ff  345 (412)
                       ++.++++|+||
T Consensus       253 -t~~~ll~~~~~  263 (263)
T cd06625         253 -SAEELLRHFFV  263 (263)
T ss_pred             -CHHHHhhCCCC
Confidence             79999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.2e-45  Score=341.50  Aligned_cols=254  Identities=39%  Similarity=0.690  Sum_probs=210.4

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHH-hhcCCCccceeeeeEEeCCeEEEE
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL-SRLSHPFLPKLLGSLETDEFLAWA  101 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il-~~l~hpnIv~l~~~~~~~~~~~lv  101 (412)
                      ++.||+|+||.||+|.+...+.    .||+|++.+......... .....|..++ ...+|+||+++++++..++.+|+|
T Consensus         1 ~~~l~~g~~~~v~~a~~~~~~~----~vavK~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv   75 (260)
T cd05611           1 LKPISKGAFGSVYLAKKRSTGD----YFAIKVLKKSDMIAKNQV-TNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLV   75 (260)
T ss_pred             CccCCcCCCeeEEEEEecCCCC----eEEEEEecchhhhHHHHH-HHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEE
Confidence            3679999999999999877544    499999977654332222 2333454444 445799999999999999999999


Q ss_pred             eeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhh
Q 042539          102 VPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF  181 (412)
Q Consensus       102 ~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~  181 (412)
                      |||+.|++|..++...  +.+++..+..++.|++.||.|||+.|++||||+|+||+++.++.+||+|||+++....    
T Consensus        76 ~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~----  149 (260)
T cd05611          76 MEYLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE----  149 (260)
T ss_pred             EeccCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc----
Confidence            9999999998887654  3489999999999999999999999999999999999999999999999998864310    


Q ss_pred             hhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeec
Q 042539          182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR  261 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~  261 (412)
                                                                                     .....|+..|+|||.+.
T Consensus       150 ---------------------------------------------------------------~~~~~~~~~y~~pe~~~  166 (260)
T cd05611         150 ---------------------------------------------------------------NKKFVGTPDYLAPETIL  166 (260)
T ss_pred             ---------------------------------------------------------------cccCCCCcCccChhhhc
Confidence                                                                           12346888999999999


Q ss_pred             CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          262 GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       262 ~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      +..++.++|||||||++|+|++|..||...+....+..+......+     ..+++.+.++|.+||+.||.+|++. .++
T Consensus       167 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~-~~~  245 (260)
T cd05611         167 GVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGA-NGY  245 (260)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCC-CcH
Confidence            8888999999999999999999999999988877777665443222     2467899999999999999999963 257


Q ss_pred             hhhhcCCCCCCCCch
Q 042539          337 CEIKEHVFFKGVRWD  351 (412)
Q Consensus       337 ~e~l~h~ff~~~~~~  351 (412)
                      +|+++||||+.++|+
T Consensus       246 ~~~l~~~~~~~~~~~  260 (260)
T cd05611         246 QEIKSHPFFKSINWD  260 (260)
T ss_pred             HHHHcChHhhcCCCC
Confidence            899999999999995

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=6.8e-45  Score=354.06  Aligned_cols=263  Identities=20%  Similarity=0.300  Sum_probs=207.2

Q ss_pred             eeeeeeecc--CceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           21 KALKILGKG--AMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        21 ~~~~~LG~G--~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +++++||+|  +||+||++.++.++..    ||+|.++....  .......+.+|+++++.++||||+++++++.+++.+
T Consensus         1 ~~~~~ig~G~~~~~~v~~~~~~~~~~~----vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~   74 (327)
T cd08227           1 ELLTVIGRGFEDLMTVNLARYKPTGEY----VTVRRINLEAC--TNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL   74 (327)
T ss_pred             ChhhhccccccceEEEEEEeecccCcE----EEEEEechhhc--cHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEE
Confidence            467899999  7899999998876554    99999976543  233455677799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.+|+|.+++.......+++..++.++.|++.||+|||++||+||||||+|||++.++.++++|||.+......
T Consensus        75 ~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~  154 (327)
T cd08227          75 WVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINH  154 (327)
T ss_pred             EEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccc
Confidence            99999999999998876554455899999999999999999999999999999999999999999999999866433110


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      .....                                                        .........+++..|+|||
T Consensus       155 ~~~~~--------------------------------------------------------~~~~~~~~~~~~~~y~aPE  178 (327)
T cd08227         155 GQRLR--------------------------------------------------------VVHDFPKYSVKVLPWLSPE  178 (327)
T ss_pred             ccccc--------------------------------------------------------ccccccccccceecccChH
Confidence            00000                                                        0000112335778899999


Q ss_pred             eecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-------------------------------
Q 042539          259 VVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-------------------------------  305 (412)
Q Consensus       259 ~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-------------------------------  305 (412)
                      ++.+  ..++.++|||||||++|||++|+.||.................                               
T Consensus       179 ~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (327)
T cd08227         179 VLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGEST  258 (327)
T ss_pred             HhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCccc
Confidence            9976  4588999999999999999999999987654443322221110                               


Q ss_pred             ----------------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 ----------------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 ----------------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                      .....++.+.+||.+||+.||++||    +++++++||||+.+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp----t~~ell~~p~f~~~~  314 (327)
T cd08227         259 TVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARP----SASTLLNHSFFKQIK  314 (327)
T ss_pred             ccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcC----CHHHHhcChhhhhcc
Confidence                            0011346799999999999999999    699999999998654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.7e-45  Score=343.49  Aligned_cols=251  Identities=37%  Similarity=0.636  Sum_probs=208.7

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      |++++.||+|+||+||+|++...+.    .||+|++.......  .......+|+.++++++|+||+++++++.++..++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~----~~~~K~~~~~~~~~--~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~   74 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQ----KVAVKIIDKSEIEE--EEREENIREIKILRRLRHPNIVQILDVFQDDNYLY   74 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTE----EEEEEEEESTTHHH--HHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCe----EEEEEEeccccccc--cccchhhhhhhcccccccccccccccccccccccc
Confidence            7899999999999999999988554    49999998775432  22333445999999999999999999999999999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      +|||++.+++|..++....  .+++.++..++.||+.||.+||++||+|+||||+||+++.+|.++|+|||++....   
T Consensus        75 ~v~~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~---  149 (260)
T PF00069_consen   75 IVMEYCPGGSLQDYLQKNK--PLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLS---  149 (260)
T ss_dssp             EEEEEETTEBHHHHHHHHS--SBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEEST---
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            9999999999988887433  48999999999999999999999999999999999999999999999999986431   


Q ss_pred             hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcccee
Q 042539          180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  259 (412)
                                                                                  ..........+|..|+|||+
T Consensus       150 ------------------------------------------------------------~~~~~~~~~~~~~~y~aPE~  169 (260)
T PF00069_consen  150 ------------------------------------------------------------ENNENFNPFVGTPEYMAPEV  169 (260)
T ss_dssp             ------------------------------------------------------------STTSEBSSSSSSGGGSCHHH
T ss_pred             ------------------------------------------------------------cccccccccccccccccccc
Confidence                                                                        11122335578999999999


Q ss_pred             ec-CCCCCchhhHHHHHHHHHHHhhCCCCCCCCC---HHHHHHHHhcCC-----CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          260 VR-GDGHEFAVDWWALGILTYEMLYGTTPFRGKN---RKETFRNVLMKT-----PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       260 l~-~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---~~~~~~~i~~~~-----~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      +. +..++.++|+||||+++|+|++|..||...+   ......+.....     .........+.++|.+||+.||++||
T Consensus       170 ~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  249 (260)
T PF00069_consen  170 LQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRP  249 (260)
T ss_dssp             HTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGST
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCc
Confidence            98 7788999999999999999999999999873   333333333211     11112237899999999999999999


Q ss_pred             CCCCChhhhhcCCCC
Q 042539          331 GYLRGACEIKEHVFF  345 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff  345 (412)
                          ++.++++||||
T Consensus       250 ----~~~~l~~~~~~  260 (260)
T PF00069_consen  250 ----SAEELLKHPWF  260 (260)
T ss_dssp             ----THHHHHTSGGG
T ss_pred             ----CHHHHhcCCCC
Confidence                69999999997

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=6.4e-45  Score=386.75  Aligned_cols=267  Identities=26%  Similarity=0.388  Sum_probs=217.5

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ....+..+++|++++.||+|+||+||+|++..++.    .||+|++......  ......+.+|+.++++|+|||||+++
T Consensus         5 ~~~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~----~vAlKvIk~~~l~--e~~~~~~~~EI~IL~~L~HPNIVrl~   78 (1021)
T PTZ00266          5 YDDGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQE----FFCWKAISYRGLK--EREKSQLVIEVNVMRELKHKNIVRYI   78 (1021)
T ss_pred             ccCCccccCCEEEEEEEecCCCeEEEEEEECCCCe----EEEEEEEeccccC--HHHHHHHHHHHHHHHHcCCCCcCeEE
Confidence            34567888999999999999999999999987544    4999999765432  23456677899999999999999999


Q ss_pred             eeEEe--CCeEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHc-------CceeeeCCCCceEE
Q 042539           90 GSLET--DEFLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNM-------GIAYRDLKPENILI  158 (412)
Q Consensus        90 ~~~~~--~~~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~-------~iiHrDlKp~NiLl  158 (412)
                      ++|.+  ...+|||||||.+|+|..++...  ....+++..++.|+.||+.||.|||+.       +||||||||+||||
T Consensus        79 d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL  158 (1021)
T PTZ00266         79 DRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFL  158 (1021)
T ss_pred             EEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEe
Confidence            99865  45799999999999998887642  234599999999999999999999995       49999999999999


Q ss_pred             cc-----------------CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCcccc
Q 042539          159 RQ-----------------SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGL  221 (412)
Q Consensus       159 ~~-----------------~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (412)
                      +.                 .+.+||+|||+++.+..                                            
T Consensus       159 ~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~--------------------------------------------  194 (1021)
T PTZ00266        159 STGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGI--------------------------------------------  194 (1021)
T ss_pred             ecCccccccccccccccCCCCceEEccCCccccccc--------------------------------------------
Confidence            64                 24589999999965411                                            


Q ss_pred             ccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC--CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHH
Q 042539          222 KKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD--GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN  299 (412)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~--~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~  299 (412)
                                          .......+||+.|+|||++.+.  .++.++||||||||||+|++|..||...+....+..
T Consensus       195 --------------------~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~  254 (1021)
T PTZ00266        195 --------------------ESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLIS  254 (1021)
T ss_pred             --------------------cccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHH
Confidence                                1112345799999999998653  478899999999999999999999987665554444


Q ss_pred             HhcCCCCC--CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          300 VLMKTPEF--VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       300 i~~~~~~~--~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      .+...+.+  ...+.++.+||.+||..+|.+||    ++.+++.|+|++.+..
T Consensus       255 ~lk~~p~lpi~~~S~eL~dLI~~~L~~dPeeRP----Sa~QlL~h~~ik~i~~  303 (1021)
T PTZ00266        255 ELKRGPDLPIKGKSKELNILIKNLLNLSAKERP----SALQCLGYQIIKNVGP  303 (1021)
T ss_pred             HHhcCCCCCcCCCCHHHHHHHHHHhcCChhHCc----CHHHHhccHHHhhcCC
Confidence            44433333  45678999999999999999999    6999999999987654

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=4.5e-45  Score=353.33  Aligned_cols=250  Identities=25%  Similarity=0.364  Sum_probs=190.4

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--CCeEEE
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--DEFLAW  100 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--~~~~~l  100 (412)
                      .++||+|+||+||+|+++...  ..+.||+|++.....      ...+.+|+++++.++||||+++++++..  +..+|+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~--~~~~~aiK~~~~~~~------~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~l   77 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGK--DDRDYALKQIEGTGI------SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL   77 (317)
T ss_pred             ccccccCCCeEEEEEEEccCC--CCceEEEEEECCCCC------cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEE
Confidence            468999999999999875422  345599999965432      2234569999999999999999999864  457899


Q ss_pred             EeeccCCCCchhHHHhh-------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE----ccCCCEEEccc
Q 042539          101 AVPYCPGGDLNVLRYKQ-------NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI----RQSGHVTLTDF  169 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~-------~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl----~~~g~vkL~DF  169 (412)
                      +|||+.+ +|..++...       ....+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+||
T Consensus        78 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~Df  156 (317)
T cd07868          78 LFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADM  156 (317)
T ss_pred             EEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeec
Confidence            9999954 666555432       12248999999999999999999999999999999999999    45678999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+.+....                                                            .........+
T Consensus       157 G~a~~~~~~~------------------------------------------------------------~~~~~~~~~~  176 (317)
T cd07868         157 GFARLFNSPL------------------------------------------------------------KPLADLDPVV  176 (317)
T ss_pred             CceeccCCCC------------------------------------------------------------ccccccCCcc
Confidence            9997542110                                                            0011123457


Q ss_pred             cCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCH---------HHHHHHHhcC--C------------C
Q 042539          250 GTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNR---------KETFRNVLMK--T------------P  305 (412)
Q Consensus       250 gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---------~~~~~~i~~~--~------------~  305 (412)
                      ||+.|+|||++.+. .++.++|||||||++|+|++|++||.+...         ...+.++...  .            +
T Consensus       177 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (317)
T cd07868         177 VTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMP  256 (317)
T ss_pred             ccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhcc
Confidence            89999999999874 579999999999999999999999975432         1111111110  0            0


Q ss_pred             C-------------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 E-------------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 ~-------------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      .                         ....+..+.|||.+||+.||.+|+    |++|+++||||
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~----t~~e~l~hp~f  317 (317)
T cd07868         257 EHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRI----TSEQAMQDPYF  317 (317)
T ss_pred             chhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCC----CHHHHhcCCCC
Confidence            0                         011245688999999999999999    79999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.6e-44  Score=348.64  Aligned_cols=252  Identities=27%  Similarity=0.427  Sum_probs=209.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||.||++.+..++.    .+|+|.+....   .......+.+|++++++++||||+++++++.+++.
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~----~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   73 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGL----IMARKLIHLEI---KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGE   73 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCe----EEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCE
Confidence            579999999999999999999877554    49999986542   23345567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      +|+||||+.|++|..++...  ..+++..++.++.|++.||.|||+ .+++||||||+|||++.+|.+||+|||++....
T Consensus        74 ~~lv~ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  151 (308)
T cd06615          74 ISICMEHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  151 (308)
T ss_pred             EEEEeeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccccc
Confidence            99999999999998887654  458999999999999999999998 599999999999999999999999999886431


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                                 ......+|++.|+|
T Consensus       152 ~-----------------------------------------------------------------~~~~~~~~~~~~~a  166 (308)
T cd06615         152 D-----------------------------------------------------------------SMANSFVGTRSYMS  166 (308)
T ss_pred             c-----------------------------------------------------------------cccccCCCCcCccC
Confidence            1                                                                 11234578999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC---------------------------------
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---------------------------------  303 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~---------------------------------  303 (412)
                      ||++.+..++.++|+|||||++|+|++|+.||...+.......+...                                 
T Consensus       167 PE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (308)
T cd06615         167 PERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYI  246 (308)
T ss_pred             hhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHH
Confidence            99998888899999999999999999999999765533322211100                                 


Q ss_pred             ----CCCC--CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          304 ----TPEF--VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       304 ----~~~~--~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                          .+..  ...+.++++||.+||..||++||    ++.++++||||.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp----t~~~ll~~~~~~~  292 (308)
T cd06615         247 VNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERA----DLKELTKHPFIKR  292 (308)
T ss_pred             hcCCCccCcCcccCHHHHHHHHHHccCChhhCc----CHHHHhcChhhhh
Confidence                0111  12467899999999999999999    6999999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=2.6e-44  Score=342.24  Aligned_cols=257  Identities=37%  Similarity=0.649  Sum_probs=201.4

Q ss_pred             eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHh---hcCCCccceeeeeEEeCCeEEEE
Q 042539           25 ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS---RLSHPFLPKLLGSLETDEFLAWA  101 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~---~l~hpnIv~l~~~~~~~~~~~lv  101 (412)
                      .||+|+||.||++++..++.    .||+|++.+....... ......+|..+++   ...|+||+.+++++..++..|+|
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~----~~aiK~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv   75 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGK----MYAMKCLDKKRIKMKQ-GETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFI   75 (279)
T ss_pred             CcccCCCeEEEEEEECCCCc----EEEEEEEEccccccch-HHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEE
Confidence            48999999999999876544    4999999765442221 1222333444333   34699999999999999999999


Q ss_pred             eeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhh
Q 042539          102 VPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF  181 (412)
Q Consensus       102 ~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~  181 (412)
                      |||+.||+|..++...  +.+++..+..++.|++.||+|||++||+||||||+|||++.++.++|+|||++......   
T Consensus        76 ~e~~~~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~---  150 (279)
T cd05633          76 LDLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK---  150 (279)
T ss_pred             EecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceecccc---
Confidence            9999999998776644  35999999999999999999999999999999999999999999999999998643110   


Q ss_pred             hhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeec
Q 042539          182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR  261 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~  261 (412)
                                                                                    ......||..|+|||.+.
T Consensus       151 --------------------------------------------------------------~~~~~~~~~~y~aPE~~~  168 (279)
T cd05633         151 --------------------------------------------------------------KPHASVGTHGYMAPEVLQ  168 (279)
T ss_pred             --------------------------------------------------------------CccCcCCCcCccCHHHhc
Confidence                                                                          011236899999999986


Q ss_pred             -CCCCCchhhHHHHHHHHHHHhhCCCCCCCCC---HHHHHHHHhcCCCC-CCCCChHHHHHHHHhhhhCCCccCCCC-CC
Q 042539          262 -GDGHEFAVDWWALGILTYEMLYGTTPFRGKN---RKETFRNVLMKTPE-FVGQRTALTDLIQRLLEKDPVKRLGYL-RG  335 (412)
Q Consensus       262 -~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---~~~~~~~i~~~~~~-~~~~~~~~~dli~~~L~~dP~~R~~~~-~~  335 (412)
                       +..++.++|+|||||++|+|++|..||.+..   .............. ....+.++.++|.+||..||++|+++. .+
T Consensus       169 ~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~  248 (279)
T cd05633         169 KGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRG  248 (279)
T ss_pred             CCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCC
Confidence             4567899999999999999999999997543   22222222222222 235678999999999999999999642 46


Q ss_pred             hhhhhcCCCCCCCCchhh
Q 042539          336 ACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~~~  353 (412)
                      +.++++||||++++|...
T Consensus       249 ~~~~~~h~~~~~~~~~~~  266 (279)
T cd05633         249 AQEVKEHVFFKGIDWQQV  266 (279)
T ss_pred             HHHHHhCccccCCCHhHH
Confidence            999999999999988644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.9e-45  Score=358.51  Aligned_cols=251  Identities=25%  Similarity=0.325  Sum_probs=197.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+...+|++++.||+|+||.||+|++..++.    .||+|+..+..          ...|+.+++.++|+||+++++++.
T Consensus        62 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~valK~~~~~~----------~~~E~~~l~~l~h~~iv~~~~~~~  127 (357)
T PHA03209         62 VVASLGYTVIKTLTPGSEGRVFVATKPGQPD----PVVLKIGQKGT----------TLIEAMLLQNVNHPSVIRMKDTLV  127 (357)
T ss_pred             hhhhcCcEEEEEecCCCCeEEEEEEECCCCc----eEEEEeCCccc----------cHHHHHHHHhCCCCCCcChhheEE
Confidence            3445689999999999999999999877544    49999864432          124899999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .....|+|||++. ++|..++... ...+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus       128 ~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  205 (357)
T PHA03209        128 SGAITCMVLPHYS-SDLYTYLTKR-SRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQ  205 (357)
T ss_pred             eCCeeEEEEEccC-CcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCcccc
Confidence            9999999999995 5676665543 3468999999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ....                                                                ........||+.
T Consensus       206 ~~~~----------------------------------------------------------------~~~~~~~~gt~~  221 (357)
T PHA03209        206 FPVV----------------------------------------------------------------APAFLGLAGTVE  221 (357)
T ss_pred             cccc----------------------------------------------------------------Cccccccccccc
Confidence            4210                                                                011124568999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCC-CCCCCCCH---------HHHHHHHhcC----CCCC------------
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGT-TPFRGKNR---------KETFRNVLMK----TPEF------------  307 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~-~Pf~~~~~---------~~~~~~i~~~----~~~~------------  307 (412)
                      |+|||++.+..++.++|||||||++|||+++. ++|.....         ...+..++..    ...+            
T Consensus       222 y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (357)
T PHA03209        222 TNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGF  301 (357)
T ss_pred             ccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHH
Confidence            99999999999999999999999999999754 44443211         1111111110    0000            


Q ss_pred             -------------------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          308 -------------------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       308 -------------------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                                         ...+.++.+||.+||+.||++||    ++.|+++||||+.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rp----ta~e~l~hp~f~~~  357 (357)
T PHA03209        302 IEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRP----SAEEILNYPMFAQL  357 (357)
T ss_pred             HhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCc----CHHHHhcCchhccC
Confidence                               13356778899999999999999    79999999999853

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=3.4e-44  Score=342.68  Aligned_cols=270  Identities=19%  Similarity=0.262  Sum_probs=217.1

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +++..++|++.+.||+|+||.||+|.++.. .......||+|.++....   ......+.+|+.+++.++|+||++++++
T Consensus         1 ~~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~   77 (288)
T cd05061           1 WEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS---LRERIEFLNEASVMKGFTCHHVVRLLGV   77 (288)
T ss_pred             CcccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEE
Confidence            456788999999999999999999876532 122345699999865432   1223456779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCC--------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQND--------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~--------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                      +.+++..|+||||+.||+|..++.....        ..++...+..++.|++.||.|||++||+||||||+|||++.++.
T Consensus        78 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~  157 (288)
T cd05061          78 VSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFT  157 (288)
T ss_pred             EcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCc
Confidence            9999999999999999999988765321        23466788999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+++.......                                                             ..
T Consensus       158 ~~L~Dfg~~~~~~~~~~-------------------------------------------------------------~~  176 (288)
T cd05061         158 VKIGDFGMTRDIYETDY-------------------------------------------------------------YR  176 (288)
T ss_pred             EEECcCCcccccccccc-------------------------------------------------------------cc
Confidence            99999999875421100                                                             00


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-CCC-CCCChHHHHHHHH
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-PEF-VGQRTALTDLIQR  320 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~~~-~~~~~~~~dli~~  320 (412)
                      ......++..|+|||.+.+..++.++|+|||||++|||++ |..||.+.+..+....+.... ... ...++.+.++|.+
T Consensus       177 ~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  256 (288)
T cd05061         177 KGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRM  256 (288)
T ss_pred             ccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Confidence            0112345778999999998889999999999999999998 899999988777766665432 222 2446889999999


Q ss_pred             hhhhCCCccCCCCCChhhhhc------CCCCCCCCc
Q 042539          321 LLEKDPVKRLGYLRGACEIKE------HVFFKGVRW  350 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~------h~ff~~~~~  350 (412)
                      ||+.||.+||    ++.++++      ||||++++|
T Consensus       257 ~l~~~p~~Rp----s~~~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         257 CWQFNPKMRP----TFLEIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             HcCCChhHCc----CHHHHHHHHHhhcCCCCCCCCC
Confidence            9999999999    4667665      999999998

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=2.5e-44  Score=342.04  Aligned_cols=250  Identities=24%  Similarity=0.437  Sum_probs=207.1

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|+++++||+|+||+||+|.+..++.    .||+|++.+...   ......+.+|++++++++||||+++++++..++.
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~----~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   73 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRR----ILAVKVIPLDIT---VELQKQIMSELEILYKCDSPYIIGFYGAFFVENR   73 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCc----EEEEEEEecCCC---hHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCE
Confidence            579999999999999999999876544    499999865421   2334567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .++||||+.|++|..+      ..+++..+..++.|++.||.|||++||+|+||||+|||++.+|.+||+|||++..+..
T Consensus        74 ~~lv~e~~~~~~l~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~  147 (279)
T cd06619          74 ISICTEFMDGGSLDVY------RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVN  147 (279)
T ss_pred             EEEEEecCCCCChHHh------hcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccc
Confidence            9999999999998543      1378999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                       ......+||..|+||
T Consensus       148 -----------------------------------------------------------------~~~~~~~~~~~y~aP  162 (279)
T cd06619         148 -----------------------------------------------------------------SIAKTYVGTNAYMAP  162 (279)
T ss_pred             -----------------------------------------------------------------ccccCCCCChhhcCc
Confidence                                                                             012245789999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH-------HHHHHHHhcCC-CC--CCCCChHHHHHHHHhhhhCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-------KETFRNVLMKT-PE--FVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-------~~~~~~i~~~~-~~--~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |++.+..++.++|+|||||++|+|++|..||.....       ......+.... +.  ....+.++.+||.+||+.||.
T Consensus       163 E~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~  242 (279)
T cd06619         163 ERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPK  242 (279)
T ss_pred             eeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChh
Confidence            999998899999999999999999999999965321       12222222222 11  223568899999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCC
Q 042539          328 KRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      +||    ++++++.|+||...+
T Consensus       243 ~Rp----~~~eil~~~~~~~~~  260 (279)
T cd06619         243 ERP----APENLMDHPFIVQYN  260 (279)
T ss_pred             hCC----CHHHHhcCccccccc
Confidence            999    699999999998654

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.9e-44  Score=342.98  Aligned_cols=253  Identities=25%  Similarity=0.355  Sum_probs=203.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++++.||+|+||.||+|+++.++.    .||+|+++.....  ......+.+|+.++++++||||+++++++.+++.+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   74 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQ----IVAMKKIRLESEE--EGVPSTAIREISLLKELQHPNIVCLQDVLMQESRL   74 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCc----EEEEEEecccccc--CCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeE
Confidence            68999999999999999999876544    4999998654321  22334566799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           99 AWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      |+||||+. ++|..++.... ...+++..++.++.||+.||.|||++||+||||||+||+++.+|.+||+|||++.....
T Consensus        75 ~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  153 (285)
T cd07861          75 YLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGI  153 (285)
T ss_pred             EEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCC
Confidence            99999997 46766654433 25689999999999999999999999999999999999999999999999999864311


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........+++.|+||
T Consensus       154 ~---------------------------------------------------------------~~~~~~~~~~~~y~aP  170 (285)
T cd07861         154 P---------------------------------------------------------------VRVYTHEVVTLWYRAP  170 (285)
T ss_pred             C---------------------------------------------------------------cccccCCcccccccCh
Confidence            0                                                               0011123578899999


Q ss_pred             eeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC---------------------C---------CC
Q 042539          258 EVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---------------------T---------PE  306 (412)
Q Consensus       258 E~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~---------------------~---------~~  306 (412)
                      |++.+. .++.++|||||||++|+|++|++||.+.+.......+...                     .         ..
T Consensus       171 E~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (285)
T cd07861         171 EVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSA  250 (285)
T ss_pred             HHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHh
Confidence            998764 4688999999999999999999999887654433222110                     0         01


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ....++++.+||.+||+.||.+||    ++.++++||||
T Consensus       251 ~~~~~~~~~~li~~~l~~dP~~Rp----t~~~ll~~~~~  285 (285)
T cd07861         251 VKNLDEDGLDLLEKMLIYDPAKRI----SAKKALNHPYF  285 (285)
T ss_pred             cCCCCHHHHHHHHHHhcCChhhCC----CHHHHhcCCCC
Confidence            224578899999999999999999    79999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=5.5e-44  Score=334.05  Aligned_cols=254  Identities=26%  Similarity=0.430  Sum_probs=217.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|.+.+.||+|+||.||+|.++.++..    |++|.+......  ......+.+|+++++.++|+||+++++++.+++..
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~----~~~k~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   74 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRV----YAMKQIDLSKMN--RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKL   74 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcE----EEEEEeehhhCC--HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEE
Confidence            689999999999999999998775544    999998765432  23445677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.|++|..++.......+++..+..++.|++.||.|||+.||+|+||||+||+++.++.++|+|||+++.+...
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~  154 (256)
T cd08529          75 NIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN  154 (256)
T ss_pred             EEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCc
Confidence            99999999999998887654556999999999999999999999999999999999999999999999999998754211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........|++.|+|||
T Consensus       155 ---------------------------------------------------------------~~~~~~~~~~~~y~aPE  171 (256)
T cd08529         155 ---------------------------------------------------------------TNFANTIVGTPYYLSPE  171 (256)
T ss_pred             ---------------------------------------------------------------cchhhccccCccccCHH
Confidence                                                                           01112446889999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCCC-CCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEFV-GQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      ++.+..++.++|+|||||++|+|++|+.||...+..+....+.... +... ..+..+.++|.+||+.+|++||    ++
T Consensus       172 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp----~~  247 (256)
T cd08529         172 LCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRP----DT  247 (256)
T ss_pred             HhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHccCCcccCc----CH
Confidence            9998889999999999999999999999999888777666666543 2222 4578899999999999999999    69


Q ss_pred             hhhhcCCCC
Q 042539          337 CEIKEHVFF  345 (412)
Q Consensus       337 ~e~l~h~ff  345 (412)
                      .+++.|||+
T Consensus       248 ~~ll~~~~~  256 (256)
T cd08529         248 FQLLRNPSL  256 (256)
T ss_pred             HHHhhCCCC
Confidence            999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-46  Score=360.56  Aligned_cols=271  Identities=28%  Similarity=0.468  Sum_probs=225.1

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++||+|-||+||-++++.+++.    ||||+|.|-....+++  ..++.|+.||+.+.||.||.|-..|++.+.+++|||
T Consensus       570 evLGSGQFG~VYgg~hRktGrd----VAvKvIdKlrFp~kqe--sqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVME  643 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHRKTGRD----VAVKVIDKLRFPTKQE--SQLRNEVAILQNLHHPGIVNLECMFETPERVFVVME  643 (888)
T ss_pred             hhccCCcceeeecceecccCce----eeeeeeecccCCCchH--HHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEeh
Confidence            6899999999999988886665    9999999887655543  667789999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC---CCEEEccccccchhhchhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS---GHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~---g~vkL~DFGla~~~~~~~~  180 (412)
                      .+.| |+.+++.....+++++...++++.||+.||.|||.+||+|+||||+|+|+...   -.+||||||+|+.+..+  
T Consensus       644 Kl~G-DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk--  720 (888)
T KOG4236|consen  644 KLHG-DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK--  720 (888)
T ss_pred             hhcc-hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchh--
Confidence            9955 56566666667889999999999999999999999999999999999999765   46999999999987422  


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                                                                                    .-..+.+|||.|.|||++
T Consensus       721 --------------------------------------------------------------sFRrsVVGTPAYLaPEVL  738 (888)
T KOG4236|consen  721 --------------------------------------------------------------SFRRSVVGTPAYLAPEVL  738 (888)
T ss_pred             --------------------------------------------------------------hhhhhhcCCccccCHHHH
Confidence                                                                          223578999999999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHH--hcCCCCCCCCChHHHHHHHHhhhhCCCccCCCCCChh
Q 042539          261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNV--LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGAC  337 (412)
Q Consensus       261 ~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i--~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~  337 (412)
                      ..++|+..-|+||+|||+|.-+.|..||+...+ .+++++.  +....++..++..+.|||+.+|+..-.+|.    +++
T Consensus       739 rnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRy----svd  814 (888)
T KOG4236|consen  739 RNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRY----SVD  814 (888)
T ss_pred             hhccccccccceeeeEEEEEEecccccCCCccchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhc----chH
Confidence            999999999999999999999999999976432 2333322  233345667889999999999999999999    699


Q ss_pred             hhhcCCCCCCCC-chhhcc---cCCCCCCCCCCCch
Q 042539          338 EIKEHVFFKGVR-WDLLTD---VLRPPFIPSREEND  369 (412)
Q Consensus       338 e~l~h~ff~~~~-~~~~~~---~~~pp~~p~~~~~~  369 (412)
                      +.+.|||+++.. |-.+.+   ..-+-|+.+..++.
T Consensus       815 k~lsh~Wlq~yq~w~DLRelE~~igeRyiThesDD~  850 (888)
T KOG4236|consen  815 KSLSHPWLQDYQTWLDLRELEVRIGERYITHESDDA  850 (888)
T ss_pred             hhccchhhhcchHHHHHHHHHHhhCcceecCcchhh
Confidence            999999999853 544433   34456776655443

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=2.8e-44  Score=341.80  Aligned_cols=253  Identities=28%  Similarity=0.453  Sum_probs=206.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||.||+|+++.++.    .||+|++.+....  ....+.+.+|+.++++++|+||+++++++.....
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~----~~~iK~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   74 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQ----IVAIKKFVESEDD--PVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRK   74 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCc----EEEEEEEeecccC--ccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCE
Confidence            579999999999999999999876544    4999998654321  1233456779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +++||||+.++.|..+....  ..+++..++.++.|++.||+|||++||+||||||+||+++.+|.+||+|||++..+..
T Consensus        75 ~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07847          75 LHLVFEYCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTG  152 (286)
T ss_pred             EEEEEeccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCC
Confidence            99999999999887665432  3589999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                               .......++..|+||
T Consensus       153 ~~---------------------------------------------------------------~~~~~~~~~~~~~aP  169 (286)
T cd07847         153 PG---------------------------------------------------------------DDYTDYVATRWYRAP  169 (286)
T ss_pred             Cc---------------------------------------------------------------ccccCcccccccCCH
Confidence            10                                                               011234578899999


Q ss_pred             eeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC----------------------CC---------
Q 042539          258 EVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK----------------------TP---------  305 (412)
Q Consensus       258 E~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~----------------------~~---------  305 (412)
                      |++.+ ..++.++|+|||||++|+|++|.+||.+.+..+....+...                      .+         
T Consensus       170 E~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (286)
T cd07847         170 ELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLE  249 (286)
T ss_pred             HHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHH
Confidence            99876 45788999999999999999999999987765544332210                      00         


Q ss_pred             -CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 -EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 -~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                       .+...+..+.+||.+||..||++||    ++.+++.||||
T Consensus       250 ~~~~~~~~~~~~li~~~l~~~p~~Rp----~~~eil~~~~f  286 (286)
T cd07847         250 SKFPNISSPALSFLKGCLQMDPTERL----SCEELLEHPYF  286 (286)
T ss_pred             HHhccCCHHHHHHHHHHhcCCccccC----CHHHHhcCCCC
Confidence             0234567899999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.4e-45  Score=355.48  Aligned_cols=259  Identities=28%  Similarity=0.426  Sum_probs=208.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~   92 (412)
                      .+.-..|+++++||+||-++||+|.....+.     ||+|.+....  ........+..|+..|.+|+ |.+||+||+|-
T Consensus       357 ~Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~i-----yalkkv~~~~--~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYE  429 (677)
T KOG0596|consen  357 KVKGREYEILKQIGSGGSSKVFKVLNSDKQI-----YALKKVVLLE--ADNQTLDGYRNEIALLNKLKGHDKIIQLYDYE  429 (677)
T ss_pred             EECcchhhHHHhhcCCCcceeeeeecCCCcc-----hhhhHHHHhh--cCHHHHHHHHHHHHHHHHhcCCceEEEEeeee
Confidence            3445689999999999999999998754433     6776654332  34456778888999999997 99999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ..++.+|+||||= ..||..++.... ...+.-.+++|+.||+.|+.++|.+||||.||||.|+|+ -.|.+||+|||+|
T Consensus       430 v~d~~lYmvmE~G-d~DL~kiL~k~~-~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLl-VkG~LKLIDFGIA  506 (677)
T KOG0596|consen  430 VTDGYLYMVMECG-DIDLNKILKKKK-SIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLL-VKGRLKLIDFGIA  506 (677)
T ss_pred             ccCceEEEEeecc-cccHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEE-EeeeEEeeeechh
Confidence            9999999999985 458887776654 334446899999999999999999999999999999999 5689999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      ..+...                                                             +..-...+.+||+
T Consensus       507 ~aI~~D-------------------------------------------------------------TTsI~kdsQvGT~  525 (677)
T KOG0596|consen  507 NAIQPD-------------------------------------------------------------TTSIVKDSQVGTV  525 (677)
T ss_pred             cccCcc-------------------------------------------------------------ccceeeccccCcc
Confidence            765321                                                             1112334679999


Q ss_pred             CCccceeecCCC-----------CCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcCC--CCCCCCC--hHHHH
Q 042539          253 EYVSPEVVRGDG-----------HEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKT--PEFVGQR--TALTD  316 (412)
Q Consensus       253 ~Y~APE~l~~~~-----------~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~~--~~~~~~~--~~~~d  316 (412)
                      .||+||.+....           .+.++||||||||||+|++|++||.... ...-+..|....  .+|+..+  .++.+
T Consensus       526 NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~~~li~  605 (677)
T KOG0596|consen  526 NYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPENDELID  605 (677)
T ss_pred             cccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCCchHHHH
Confidence            999999986432           3578999999999999999999998743 344455555432  3566654  45999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ++..||.+||.+||    ++.++|+|||+..
T Consensus       606 ~mK~CL~rdPkkR~----si~eLLqhpFl~~  632 (677)
T KOG0596|consen  606 VMKCCLARDPKKRW----SIPELLQHPFLQI  632 (677)
T ss_pred             HHHHHHhcCcccCC----CcHHHhcCccccc
Confidence            99999999999999    6899999999975

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=5e-44  Score=341.16  Aligned_cols=277  Identities=44%  Similarity=0.777  Sum_probs=223.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~   97 (412)
                      +|++.+.||+|+||.||++++.... ..+..||||++++............+.+|++++.++. |+||+++++.+..+..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~   79 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGH-DAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTK   79 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccc-cCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCE
Confidence            5899999999999999999865432 2455699999987655444455667788999999995 9999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.||+|..++...  ..+++..++.++.|++.||.|||+.|++||||||+||+++.++.++|+|||+++.+..
T Consensus        80 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  157 (288)
T cd05583          80 LHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA  157 (288)
T ss_pred             EEEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcccccccc
Confidence            99999999999998776543  3589999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                              ........+|+..|+||
T Consensus       158 ~--------------------------------------------------------------~~~~~~~~~~~~~y~aP  175 (288)
T cd05583         158 E--------------------------------------------------------------EEERAYSFCGTIEYMAP  175 (288)
T ss_pred             c--------------------------------------------------------------cccccccccCCccccCH
Confidence            1                                                              00112235688999999


Q ss_pred             eeecCCC--CCchhhHHHHHHHHHHHhhCCCCCCCCC----HHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccC
Q 042539          258 EVVRGDG--HEFAVDWWALGILTYEMLYGTTPFRGKN----RKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       258 E~l~~~~--~~~~~DiwSlGvil~ell~g~~Pf~~~~----~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |.+.+..  .+.++|+||||+++|+|++|..||....    ..+....+....+.. ...+..+.++|.+||+.||++||
T Consensus       176 E~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  255 (288)
T cd05583         176 EVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEARDFIQKLLEKDPKKRL  255 (288)
T ss_pred             HHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCCCcccCHHHHHHHHHHhcCCHhhcc
Confidence            9987764  6889999999999999999999996432    223333444333333 34578899999999999999999


Q ss_pred             CCCCChhhhhcCCCCCCCCchhhccc-CCCCC
Q 042539          331 GYLRGACEIKEHVFFKGVRWDLLTDV-LRPPF  361 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~~~~~~~~~-~~pp~  361 (412)
                      +. .++.++++|+||+.++|+.+... ..++|
T Consensus       256 t~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  286 (288)
T cd05583         256 GA-NGADEIKNHPFFQGIDWDDLAAKRIPAPF  286 (288)
T ss_pred             Cc-chHHHHhcCcccccCCHHHHhhhccCCCC
Confidence            64 35889999999999999877553 34444

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-44  Score=341.66  Aligned_cols=257  Identities=26%  Similarity=0.420  Sum_probs=215.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||.|+||.||++.+..++    ..||+|++....    ......+.+|+.+++.++|+||+++++++..+.
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~----~~~~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   75 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETG----LFAAAKIIQIES----EEELEDFMVEIDILSECKHPNIVGLYEAYFYEN   75 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCC----cEEEEEEEeeCC----HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC
Confidence            468999999999999999999887644    449999986542    223455677999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+||||+.|++|..++.... ..+++..++.++.|++.||.|||+.||+|+||||+||+++.++.++|+|||++....
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~  154 (280)
T cd06611          76 KLWILIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNK  154 (280)
T ss_pred             eEEEEeeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhc
Confidence            9999999999999988776533 359999999999999999999999999999999999999999999999999876432


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                               .........||+.|+|
T Consensus       155 ~---------------------------------------------------------------~~~~~~~~~~~~~y~~  171 (280)
T cd06611         155 S---------------------------------------------------------------TLQKRDTFIGTPYWMA  171 (280)
T ss_pred             c---------------------------------------------------------------cccccceeecchhhcC
Confidence            1                                                               0111234568999999


Q ss_pred             ceeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCC
Q 042539          257 PEVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       257 PE~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~  327 (412)
                      ||++..     ..++.++|+|||||++|+|++|++||.+.+......++....+.    ....+.++.++|.+||..+|.
T Consensus       172 PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  251 (280)
T cd06611         172 PEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPD  251 (280)
T ss_pred             HHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChh
Confidence            999853     44678999999999999999999999988777766666654322    124578999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCC
Q 042539          328 KRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      +||    ++.++++|+||....
T Consensus       252 ~Rp----s~~~il~~~~~~~~~  269 (280)
T cd06611         252 DRP----TAAELLKHPFVSDQS  269 (280)
T ss_pred             hCc----CHHHHhcChhhcccc
Confidence            999    699999999998754

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=3.6e-44  Score=337.10  Aligned_cols=255  Identities=38%  Similarity=0.710  Sum_probs=214.2

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||.|+||.||+|.+..++.    .||+|++.+..... ....+.+.+|+.+++.++|+||+++++.+.+++.+|++|||+
T Consensus         1 lg~g~~~~v~~~~~~~~~~----~~~iK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   75 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNR----TFALKCVKKRHIVE-TGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYC   75 (262)
T ss_pred             CCCCCceEEEEEEECCCCc----EEEEEEEehhcchh-hhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecC
Confidence            7999999999999876444    49999997655322 234567888999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhc
Q 042539          106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS  185 (412)
Q Consensus       106 ~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~  185 (412)
                      .|++|..++....  .+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||+++.....       
T Consensus        76 ~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~-------  146 (262)
T cd05572          76 LGGELWTILRDRG--LFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG-------  146 (262)
T ss_pred             CCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcc-------
Confidence            9999988876543  4899999999999999999999999999999999999999999999999998754211       


Q ss_pred             ccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCC
Q 042539          186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  265 (412)
                                                                               .......|++.|+|||.+.+..+
T Consensus       147 ---------------------------------------------------------~~~~~~~~~~~~~~PE~~~~~~~  169 (262)
T cd05572         147 ---------------------------------------------------------QKTWTFCGTPEYVAPEIILNKGY  169 (262)
T ss_pred             ---------------------------------------------------------cccccccCCcCccChhHhcCCCC
Confidence                                                                     11223468899999999988888


Q ss_pred             CchhhHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHHhc--CCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CChhhh
Q 042539          266 EFAVDWWALGILTYEMLYGTTPFRGKN--RKETFRNVLM--KTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RGACEI  339 (412)
Q Consensus       266 ~~~~DiwSlGvil~ell~g~~Pf~~~~--~~~~~~~i~~--~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~~~e~  339 (412)
                      +.++|+|||||++|+|++|..||....  ..+.+..+..  ....++ ..++.+.++|.+||..||.+|+++. ..++|+
T Consensus       170 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l  249 (262)
T cd05572         170 DFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDI  249 (262)
T ss_pred             CChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHH
Confidence            999999999999999999999998876  5666666663  223333 3468999999999999999999532 238999


Q ss_pred             hcCCCCCCCCch
Q 042539          340 KEHVFFKGVRWD  351 (412)
Q Consensus       340 l~h~ff~~~~~~  351 (412)
                      ++||||++.+|+
T Consensus       250 ~~~~~~~~~~~~  261 (262)
T cd05572         250 KKHKWFNGFDWE  261 (262)
T ss_pred             hcChhhhCCCCC
Confidence            999999999885

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-46  Score=361.24  Aligned_cols=251  Identities=24%  Similarity=0.357  Sum_probs=215.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|.-++.||+|+||.||.|++..+...    ||||.+..+.. ...+.++.+++|++.|.++.|||++.+-++|..+...
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~ev----VAIKKMsySGK-Qs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~Ta  101 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEV----VAIKKMSYSGK-QSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTA  101 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccce----eeeeecccccc-ccHHHHHHHHHHHHHHHhccCCCcccccceeeccchH
Confidence            578899999999999999999886555    99999976654 3456678889999999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |||||||-| +-.+++.-.. .++.+.++..|..+.+.||.|||+++.||||||..|||+++.|.|||+|||.|...   
T Consensus       102 WLVMEYClG-SAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~---  176 (948)
T KOG0577|consen  102 WLVMEYCLG-SASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIM---  176 (948)
T ss_pred             HHHHHHHhc-cHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhc---
Confidence            999999966 4445554433 35999999999999999999999999999999999999999999999999988644   


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                      ...++|+|||.|||||
T Consensus       177 ----------------------------------------------------------------~PAnsFvGTPywMAPE  192 (948)
T KOG0577|consen  177 ----------------------------------------------------------------APANSFVGTPYWMAPE  192 (948)
T ss_pred             ----------------------------------------------------------------CchhcccCCccccchh
Confidence                                                                            2456899999999999


Q ss_pred             eecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCC--CCCChHHHHHHHHhhhhCCCccCCC
Q 042539          259 VVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEF--VGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       259 ~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~--~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ++..   ..|+-++||||||+++.||.-.+||+...+-...+..|..+. |.+  ..+++.++.||..||++-|.+||  
T Consensus       193 VILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRp--  270 (948)
T KOG0577|consen  193 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERP--  270 (948)
T ss_pred             HheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCC--
Confidence            9865   458999999999999999999999977766666566665544 443  34678999999999999999999  


Q ss_pred             CCChhhhhcCCCCCC
Q 042539          333 LRGACEIKEHVFFKG  347 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~  347 (412)
                        +.++++.|+|...
T Consensus       271 --tse~ll~H~fv~R  283 (948)
T KOG0577|consen  271 --TSEELLKHRFVLR  283 (948)
T ss_pred             --cHHHHhhcchhcc
Confidence              6899999999864

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1e-43  Score=339.32  Aligned_cols=271  Identities=42%  Similarity=0.725  Sum_probs=219.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~   97 (412)
                      +|++.+.||.|+||.||+|++.... .++..||+|++++...........++.+|+++++++. |+||++++++++.+..
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~-~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~   79 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGH-DSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTK   79 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCC-CCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCe
Confidence            5899999999999999999875321 2445699999976554333445566778999999994 8999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.|++|..++...  ..+++..+..++.|++.||.|||+.|++||||||+|||++.++.+||+|||+++....
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  157 (290)
T cd05613          80 LHLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE  157 (290)
T ss_pred             EEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceeccc
Confidence            99999999999998877654  3489999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                              .........|+..|+||
T Consensus       158 ~--------------------------------------------------------------~~~~~~~~~~~~~y~aP  175 (290)
T cd05613         158 D--------------------------------------------------------------EVERAYSFCGTIEYMAP  175 (290)
T ss_pred             c--------------------------------------------------------------cccccccccCCcccCCh
Confidence            1                                                              00112245689999999


Q ss_pred             eeecCC--CCCchhhHHHHHHHHHHHhhCCCCCCCCC----HHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccC
Q 042539          258 EVVRGD--GHEFAVDWWALGILTYEMLYGTTPFRGKN----RKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       258 E~l~~~--~~~~~~DiwSlGvil~ell~g~~Pf~~~~----~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |.+.+.  .++.++|||||||++|+|++|..||....    ..+....+....+.+ ...+..+.++|.+||..||.+|+
T Consensus       176 E~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         176 DIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             hhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCCCCccCCHHHHHHHHHHhcCCHHHhc
Confidence            998753  46789999999999999999999997532    233344444433333 34578899999999999999998


Q ss_pred             CCC-CChhhhhcCCCCCCCCchhhc
Q 042539          331 GYL-RGACEIKEHVFFKGVRWDLLT  354 (412)
Q Consensus       331 ~~~-~~~~e~l~h~ff~~~~~~~~~  354 (412)
                      +.+ .+++++++||||..++|+.+.
T Consensus       256 ~~~~~~~~~l~~~~~~~~~~~~~~~  280 (290)
T cd05613         256 GCGPSDADEIKKHPFFQKINWDDLA  280 (290)
T ss_pred             CCCCCCHHHHHcCcccccCCHHHHh
Confidence            653 469999999999999998653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=9.8e-44  Score=375.92  Aligned_cols=153  Identities=31%  Similarity=0.504  Sum_probs=136.0

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|+++++||+|+||+||+|.+...+.    .||||++++..... ......+.+|+.+++.++|+||+++++++...
T Consensus         2 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----~vAiKvi~~~~~~~-~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~   76 (669)
T cd05610           2 SIEEFVIVKPISRGAFGKVYLGRKKNNSK----LYAVKVVKKADMIN-KNMVHQVQAERDALALSKSPFIVHLYYSLQSA   76 (669)
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCc----EEEEEEEehhhccC-HHHHHHHHHHHHHHHhcCCCCcCeEEEEEEEC
Confidence            47899999999999999999999987544    49999997655422 33456677899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ..+|+||||+.|++|..++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+++..
T Consensus        77 ~~~~lVmEy~~g~~L~~li~~~--~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~  154 (669)
T cd05610          77 NNVYLVMEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVT  154 (669)
T ss_pred             CEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCccc
Confidence            9999999999999998887654  34899999999999999999999999999999999999999999999999999854

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=3e-44  Score=338.64  Aligned_cols=254  Identities=24%  Similarity=0.354  Sum_probs=207.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|++.+.||+|+||.||+|++..++.    .||+|+++....    .....+.+|+.+++.++||||+++++++.
T Consensus         5 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~----~~~~~~~~e~~~~~~l~h~~ii~~~~~~~   76 (267)
T cd06645           5 RNPQEDFELIQRIGSGTYGDVYKARNVNTGE----LAAIKVIKLEPG----EDFAVVQQEIIMMKDCKHSNIVAYFGSYL   76 (267)
T ss_pred             cCcHHHHHHHHHhCCCCCeEEEEEEEcCCCc----EEEEEEEecCch----hHHHHHHHHHHHHHhCCCCCeeeEEEEEE
Confidence            3455799999999999999999998876544    499999865432    12334667999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .++.+|+||||+.+++|..++...  +.+++.+++.++.|++.||.|||++||+|+||||+||+++.++.+||+|||++.
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd06645          77 RRDKLWICMEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSA  154 (267)
T ss_pred             eCCEEEEEEeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeee
Confidence            999999999999999998877554  359999999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                               ........||..
T Consensus       155 ~~~~~---------------------------------------------------------------~~~~~~~~~~~~  171 (267)
T cd06645         155 QITAT---------------------------------------------------------------IAKRKSFIGTPY  171 (267)
T ss_pred             EccCc---------------------------------------------------------------ccccccccCccc
Confidence            54210                                                               011123468999


Q ss_pred             Cccceeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---C---CCCCChHHHHHHHHhhhh
Q 042539          254 YVSPEVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP---E---FVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       254 Y~APE~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~---~---~~~~~~~~~dli~~~L~~  324 (412)
                      |+|||++.   ...++.++|+|||||++|+|++|..||.................   .   ....+..+.+||.+||..
T Consensus       172 y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  251 (267)
T cd06645         172 WMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTK  251 (267)
T ss_pred             ccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccC
Confidence            99999975   44578899999999999999999999976554333332222211   1   123567899999999999


Q ss_pred             CCCccCCCCCChhhhhcCCC
Q 042539          325 DPVKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~f  344 (412)
                      ||++||    +++++++|||
T Consensus       252 ~P~~R~----~~~~ll~~~~  267 (267)
T cd06645         252 NPKKRP----TAEKLLQHPF  267 (267)
T ss_pred             CchhCc----CHHHHhcCCC
Confidence            999999    6999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-47  Score=344.22  Aligned_cols=254  Identities=25%  Similarity=0.406  Sum_probs=216.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +-|.++.+||+|+||.||+|.++.++.    .+|||.+..+      ...+.+.+||.||++++.++||++|+.+..+..
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~----v~AIK~VPV~------sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sD  102 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGH----VLAIKKVPVD------TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSD  102 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCc----EEEEEecCcc------chHHHHHHHHHHHHHcCCchhhhhhhhhccCCc
Confidence            357899999999999999888777554    4999998543      235566779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||..|+..+.++.++ ..++|+++..+++..+.||+|||...-||||||..|||++-+|+.||+|||.|..+.+
T Consensus       103 LWIVMEYCGAGSiSDI~R~R~-K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTD  181 (502)
T KOG0574|consen  103 LWIVMEYCGAGSISDIMRARR-KPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTD  181 (502)
T ss_pred             eEeehhhcCCCcHHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhh
Confidence            999999999999999887655 5799999999999999999999999999999999999999999999999999976632


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ....++..|||-||||
T Consensus       182 T---------------------------------------------------------------MAKRNTVIGTPFWMAP  198 (502)
T KOG0574|consen  182 T---------------------------------------------------------------MAKRNTVIGTPFWMAP  198 (502)
T ss_pred             h---------------------------------------------------------------HHhhCccccCcccccH
Confidence            1                                                               2235688999999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-CCCCC---CCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-TPEFV---GQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-~~~~~---~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |++..-+|+.++||||||++..||..|++||........+--|-.+ .|.|.   ..++++.|||++||.++|++|-   
T Consensus       199 EVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~---  275 (502)
T KOG0574|consen  199 EVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERK---  275 (502)
T ss_pred             HHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHH---
Confidence            9999999999999999999999999999999875533222112122 22222   3468899999999999999998   


Q ss_pred             CChhhhhcCCCCCCCC
Q 042539          334 RGACEIKEHVFFKGVR  349 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~~  349 (412)
                       |+-++++|+|.++..
T Consensus       276 -TA~~L~~H~FiknA~  290 (502)
T KOG0574|consen  276 -TALRLCEHTFIKNAP  290 (502)
T ss_pred             -HHHHHhhhhhhcCCC
Confidence             799999999998754

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=8.1e-44  Score=334.74  Aligned_cols=258  Identities=27%  Similarity=0.446  Sum_probs=216.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||.|+||+||+|.+..++    ..+|+|++.......   ....+.+|+.+++.++|+||+++++.+..++.
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~----~~~~ik~~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   73 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNN----EKVAIKRIDLEKCQT---SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDE   73 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCC----cEEEEEEeccCCcch---HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCE
Confidence            58999999999999999999887644    349999997654322   44567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           98 LAWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~-~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .|+|||++.|++|..++..... ..+++..++.++.|++.||.|||++||+||||||+||+++.++.++|+|||++..+.
T Consensus        74 ~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~  153 (267)
T cd06610          74 LWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLA  153 (267)
T ss_pred             EEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhc
Confidence            9999999999999888765432 468999999999999999999999999999999999999999999999999987653


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ....                                                           .........+|+..|+|
T Consensus       154 ~~~~-----------------------------------------------------------~~~~~~~~~~~~~~y~~  174 (267)
T cd06610         154 DGGD-----------------------------------------------------------RTRKVRKTFVGTPCWMA  174 (267)
T ss_pred             cCcc-----------------------------------------------------------ccccccccccCChhhcC
Confidence            2110                                                           00012235578999999


Q ss_pred             ceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-------CCCCChHHHHHHHHhhhhCCCc
Q 042539          257 PEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-------FVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       257 PE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-------~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      ||++... .++.++|+|||||++|+|++|+.||...+....+.++....+.       ....+..+.++|.+||..||++
T Consensus       175 Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  254 (267)
T cd06610         175 PEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSK  254 (267)
T ss_pred             hHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhh
Confidence            9998876 6789999999999999999999999987776666665544321       1245688999999999999999


Q ss_pred             cCCCCCChhhhhcCCCC
Q 042539          329 RLGYLRGACEIKEHVFF  345 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff  345 (412)
                      ||    ++.++++||||
T Consensus       255 Rp----~~~~ll~~p~~  267 (267)
T cd06610         255 RP----TAEELLKHKFF  267 (267)
T ss_pred             Cc----CHHHHhhCCCC
Confidence            99    69999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=4.6e-44  Score=338.03  Aligned_cols=252  Identities=23%  Similarity=0.400  Sum_probs=206.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeC-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETD-   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~-   95 (412)
                      +.|.+.+.||+|+||.||+|.+..++.    .||+|++.....     ....+.+|+.+++.+ +|+||+++++++... 
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~----~~aik~~~~~~~-----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~   76 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQ----LAAIKVMDVTGD-----EEEEIKQEINMLKKYSHHRNIATYYGAFIKKN   76 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEcCCCc----EEEEEEEEcCCc-----cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecC
Confidence            468999999999999999998876544    499999865421     123456699999998 699999999998753 


Q ss_pred             -----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           96 -----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        96 -----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                           ..+|++|||+.+++|..++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||
T Consensus        77 ~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg  156 (272)
T cd06637          77 PPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFG  156 (272)
T ss_pred             CCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCC
Confidence                 468999999999999988776555568999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.....                                                               ........|
T Consensus       157 ~~~~~~~~---------------------------------------------------------------~~~~~~~~g  173 (272)
T cd06637         157 VSAQLDRT---------------------------------------------------------------VGRRNTFIG  173 (272)
T ss_pred             Cceecccc---------------------------------------------------------------cccCCcccc
Confidence            98654210                                                               112234578


Q ss_pred             CCCCccceeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---CCCCCCChHHHHHHHHhh
Q 042539          251 TEEYVSPEVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       251 t~~Y~APE~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~dli~~~L  322 (412)
                      +..|+|||++.+     ..++.++|||||||++|+|++|..||...........+....   ......+..+.+||.+||
T Consensus       174 ~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  253 (272)
T cd06637         174 TPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCL  253 (272)
T ss_pred             cccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHc
Confidence            999999999863     357889999999999999999999998766554443333221   122345789999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCC
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ..||.+||    ++.+++.||||
T Consensus       254 ~~~p~~Rp----t~~~il~~~~~  272 (272)
T cd06637         254 VKNHSQRP----TTEQLMKHPFI  272 (272)
T ss_pred             CCChhhCC----CHHHHhhCCCC
Confidence            99999999    69999999997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=5.6e-44  Score=339.60  Aligned_cols=261  Identities=20%  Similarity=0.303  Sum_probs=215.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ++.+++|++++.||+|+||.||+|.+...+ ......||+|.++...   .......+.+|++++..++||||+++++++
T Consensus         1 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~---~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~   77 (283)
T cd05048           1 EIPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA---EPKVQQEFRQEAELMSDLQHPNIVCLLGVC   77 (283)
T ss_pred             CCChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC---CHHHHHHHHHHHHHHHhcCCcccceEEEEE
Confidence            367789999999999999999999876544 2234569999986443   223455677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQND--------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI  158 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~--------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl  158 (412)
                      .+....|++|||+.+++|..++.....              ..+++.++..++.|++.||.|||++|++||||||+||++
T Consensus        78 ~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~  157 (283)
T cd05048          78 TKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLV  157 (283)
T ss_pred             cCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEE
Confidence            999999999999999999888765421              357889999999999999999999999999999999999


Q ss_pred             ccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          159 RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      +.++.+||+|||+++......                                                           
T Consensus       158 ~~~~~~~L~dfg~~~~~~~~~-----------------------------------------------------------  178 (283)
T cd05048         158 GEGLTVKISDFGLSRDIYSAD-----------------------------------------------------------  178 (283)
T ss_pred             cCCCcEEECCCcceeeccccc-----------------------------------------------------------
Confidence            999999999999987542110                                                           


Q ss_pred             cCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHH
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALT  315 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~  315 (412)
                        .........+++.|+|||.+.+..++.++|||||||++|||++ |..||.+.+..+....+.....  .....++++.
T Consensus       179 --~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  256 (283)
T cd05048         179 --YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPEDCPARVY  256 (283)
T ss_pred             --cccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHH
Confidence              0011123356889999999988889999999999999999997 9999999888877776654432  2235678999


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +|+.+||+.||.+||    ++.+++++
T Consensus       257 ~l~~~c~~~~p~~Rp----~~~~i~~~  279 (283)
T cd05048         257 ALMIECWNEIPARRP----RFKDIHTR  279 (283)
T ss_pred             HHHHHHccCChhhCc----CHHHHHHH
Confidence            999999999999999    68888763

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=8e-44  Score=338.76  Aligned_cols=254  Identities=27%  Similarity=0.420  Sum_probs=210.8

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      -|++++.||+|+||.||++.+..++.    .+|+|.+....    ......+.+|+.+++.++|+||+++++++..++..
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~~~~----~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~   77 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKETGV----LAAAKVIDTKS----EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNL   77 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECCCCe----EEEEEEeCCCC----HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEE
Confidence            36899999999999999999877554    48999986543    22345567799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.|++|..++... ...+++..+..++.|++.||.|||+.||+||||||+|||++.+|.+||+|||++......
T Consensus        78 ~~v~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~  156 (282)
T cd06643          78 WILIEFCAGGAVDAVMLEL-ERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  156 (282)
T ss_pred             EEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccccccc
Confidence            9999999999997766542 345899999999999999999999999999999999999999999999999998654210


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........||..|+|||
T Consensus       157 ---------------------------------------------------------------~~~~~~~~~~~~y~aPE  173 (282)
T cd06643         157 ---------------------------------------------------------------IQRRDSFIGTPYWMAPE  173 (282)
T ss_pred             ---------------------------------------------------------------ccccccccccccccCHh
Confidence                                                                           01122456899999999


Q ss_pred             eec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCCcc
Q 042539          259 VVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       259 ~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      ++.     +..++.++|+|||||++|+|++|.+||...+..+...++....+.    ....+.++.+||.+||..||.+|
T Consensus       174 ~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (282)
T cd06643         174 VVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDAR  253 (282)
T ss_pred             hccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhC
Confidence            984     345678999999999999999999999988776666665543221    22456889999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~  348 (412)
                      |    +++++++||||...
T Consensus       254 p----~~~~il~~~~~~~~  268 (282)
T cd06643         254 W----TTTQLLQHPFVTVN  268 (282)
T ss_pred             c----CHHHHhcCCCEecc
Confidence            9    68999999999853

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=2e-44  Score=342.81  Aligned_cols=252  Identities=27%  Similarity=0.425  Sum_probs=202.0

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++++.||+|+||.||+|++..++.    .||+|+++....  .......+.+|+.++++++|+||+++++++.+.+.+
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~----~~~~k~~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~   74 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHE----IVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKL   74 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCc----EEEEEEeecccc--cccCccchhHHHHHHHhcCCCCeeeHHHHhccCCce
Confidence            58999999999999999999987554    499999975432  122334566799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+++||+.+ +|..++... .+.+++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.....
T Consensus        75 ~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  152 (284)
T cd07839          75 TLVFEYCDQ-DLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIP  152 (284)
T ss_pred             EEEEecCCC-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCC
Confidence            999999975 665555433 345899999999999999999999999999999999999999999999999998643110


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........+++.|+|||
T Consensus       153 ---------------------------------------------------------------~~~~~~~~~~~~y~aPE  169 (284)
T cd07839         153 ---------------------------------------------------------------VRCYSAEVVTLWYRPPD  169 (284)
T ss_pred             ---------------------------------------------------------------CCCcCCCccccCCcChH
Confidence                                                                           00112235788999999


Q ss_pred             eecCCC-CCchhhHHHHHHHHHHHhhCCCC-CCCCCHHHHHHHHhcCC------------------------------CC
Q 042539          259 VVRGDG-HEFAVDWWALGILTYEMLYGTTP-FRGKNRKETFRNVLMKT------------------------------PE  306 (412)
Q Consensus       259 ~l~~~~-~~~~~DiwSlGvil~ell~g~~P-f~~~~~~~~~~~i~~~~------------------------------~~  306 (412)
                      ++.+.. ++.++|||||||++|+|++|..| |.+.+..+.+..+....                              ..
T Consensus       170 ~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (284)
T cd07839         170 VLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNV  249 (284)
T ss_pred             HHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhh
Confidence            987754 68999999999999999998877 55555555444332100                              01


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      .+..++++++||.+||..||.+||    +++++++||||
T Consensus       250 ~~~~~~~~~~li~~~l~~~P~~R~----t~~~il~h~~f  284 (284)
T cd07839         250 VPKLNSTGRDLLQNLLVCNPVQRI----SAEEALQHPYF  284 (284)
T ss_pred             cccCCHHHHHHHHHHhcCChhhcC----CHHHHhcCCCC
Confidence            124568899999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-45  Score=327.74  Aligned_cols=259  Identities=25%  Similarity=0.406  Sum_probs=217.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~   90 (412)
                      +...++++++++..||+|+-|.||+++.+.++..    .|||.+.+..   +.+..++++..+.++.... +|+||++++
T Consensus        86 r~~~dindl~~l~dlGsGtcG~V~k~~~rs~~~i----iAVK~M~rt~---Nkee~kRILmDldvv~~s~dcpyIV~c~G  158 (391)
T KOG0983|consen   86 RYQADINDLENLGDLGSGTCGQVWKMRFRSTGHI----IAVKQMRRTG---NKEENKRILMDLDVVLKSHDCPYIVQCFG  158 (391)
T ss_pred             ccccChHHhhhHHhhcCCCccceEEEEEcccceE----EEEEeecccC---CHHHHHHHHHhhhHHhhccCCCeeeeeee
Confidence            4567788999999999999999999999886655    9999997764   3445677777888887775 999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +|..+..+++.||.| +.-++.++.. ..+.++|..+-.+...++.||.||-. +||||||+||+|||+|..|++|||||
T Consensus       159 yFi~n~dV~IcMelM-s~C~ekLlkr-ik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDF  236 (391)
T KOG0983|consen  159 YFITNTDVFICMELM-STCAEKLLKR-IKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDF  236 (391)
T ss_pred             EEeeCchHHHHHHHH-HHHHHHHHHH-hcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecc
Confidence            999999999999998 3334444443 34569999999999999999999975 68999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |++..+.++...                                                                +.-.
T Consensus       237 GIsGrlvdSkAh----------------------------------------------------------------trsA  252 (391)
T KOG0983|consen  237 GISGRLVDSKAH----------------------------------------------------------------TRSA  252 (391)
T ss_pred             cccceeeccccc----------------------------------------------------------------cccc
Confidence            999887544322                                                                1224


Q ss_pred             cCCCCccceeecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcCCCCCC----CCChHHHHHHHHh
Q 042539          250 GTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKTPEFV----GQRTALTDLIQRL  321 (412)
Q Consensus       250 gt~~Y~APE~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~~~~~~----~~~~~~~dli~~~  321 (412)
                      |-+.|||||.+.-   ..|+.++||||||++++||.||+.||.+.+ +-+++.+++...|+..    ..++++.+|+..|
T Consensus       253 GC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~C  332 (391)
T KOG0983|consen  253 GCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDC  332 (391)
T ss_pred             CCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHH
Confidence            8889999999864   368999999999999999999999999954 5578888887665432    3689999999999


Q ss_pred             hhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          322 LEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      |++|+.+||    ...++++|||+..
T Consensus       333 L~kd~r~RP----~Y~~Ll~h~Fi~~  354 (391)
T KOG0983|consen  333 LTKDHRKRP----KYNKLLEHPFIKR  354 (391)
T ss_pred             hhcCcccCc----chHHHhcCcceee
Confidence            999999999    5799999999874

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.2e-43  Score=334.20  Aligned_cols=260  Identities=27%  Similarity=0.449  Sum_probs=213.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh-----hHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA-----KHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~-----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +|.+.+.||+|+||.||+|.+...+    ..||+|++.......     .......+.+|+.++++++||||+++++++.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~----~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   76 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSG----ELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSL   76 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCC----cEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEE
Confidence            4788999999999999999887644    349999886543321     2234466788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      ..+..+++|||+.|++|..++...  +.+++..+..++.|++.||+|||++|++||||||+||+++.++.+||+|||+++
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~  154 (267)
T cd06628          77 DADHLNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISK  154 (267)
T ss_pred             eCCccEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCc
Confidence            999999999999999998887654  348999999999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ........                                                         .........+.|+..
T Consensus       155 ~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~~~~  177 (267)
T cd06628         155 KLEANSLS---------------------------------------------------------TKTNGARPSLQGSVF  177 (267)
T ss_pred             cccccccc---------------------------------------------------------CCccccccccCCCcC
Confidence            65311000                                                         001112234568899


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-CCCC-CCCChHHHHHHHHhhhhCCCccCC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-TPEF-VGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-~~~~-~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |+|||.+.+..++.++|+|||||++|+|++|+.||.+.+......++... .+.. ...+..+.++|.+||+.||.+|| 
T Consensus       178 y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  256 (267)
T cd06628         178 WMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRP-  256 (267)
T ss_pred             ccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCCcCCcccCHHHHHHHHHHccCCchhCc-
Confidence            99999999888899999999999999999999999987665555544332 2222 34578899999999999999999 


Q ss_pred             CCCChhhhhcCCCC
Q 042539          332 YLRGACEIKEHVFF  345 (412)
Q Consensus       332 ~~~~~~e~l~h~ff  345 (412)
                         ++.++++|+||
T Consensus       257 ---~~~~il~~~~~  267 (267)
T cd06628         257 ---TAAELLKHPFL  267 (267)
T ss_pred             ---CHHHHhhCCCC
Confidence               69999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=2e-43  Score=330.73  Aligned_cols=254  Identities=30%  Similarity=0.465  Sum_probs=217.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++++.||.|+||.||++++..++.    .+++|.+......  ......+.+|+.++++++|+||+++++++.+.+.+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~----~~~~k~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~   74 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDS----LVVWKEVNLTRLS--EKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTL   74 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCc----EEEEEEEeecccc--hhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeE
Confidence            69999999999999999999876544    4999998665432  23345677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      +++||||.|++|..++.......+++..+..++.|++.||.|||+.|++|+||||+||+++.++.+||+|||++......
T Consensus        75 ~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~  154 (256)
T cd08221          75 LIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSE  154 (256)
T ss_pred             EEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccc
Confidence            99999999999998887654556899999999999999999999999999999999999999999999999998754211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      .                                                               .......|++.|+|||
T Consensus       155 ~---------------------------------------------------------------~~~~~~~~~~~y~ape  171 (256)
T cd08221         155 Y---------------------------------------------------------------SMAETVVGTPYYMSPE  171 (256)
T ss_pred             c---------------------------------------------------------------ccccccCCCccccCHh
Confidence            0                                                               0123456899999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      .+.+..++.++|+|||||++|+|++|..||...+..+....+......  ....+.++.++|.+||..+|.+||    ++
T Consensus       172 ~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~----s~  247 (256)
T cd08221         172 LCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRP----TA  247 (256)
T ss_pred             hcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcccCcccCC----CH
Confidence            999888889999999999999999999999998888877777654322  234578999999999999999999    69


Q ss_pred             hhhhcCCCC
Q 042539          337 CEIKEHVFF  345 (412)
Q Consensus       337 ~e~l~h~ff  345 (412)
                      .++++|+|+
T Consensus       248 ~~ll~~~~l  256 (256)
T cd08221         248 DEVLDQPLL  256 (256)
T ss_pred             HHHhhCcCC
Confidence            999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.1e-43  Score=341.82  Aligned_cols=258  Identities=22%  Similarity=0.267  Sum_probs=205.1

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCC------------CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAAD------------PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH   82 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~------------~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h   82 (412)
                      +..++|++.++||+|+||.||+|.+....            ...+..||+|++.....   ......+.+|++++++++|
T Consensus         2 ~~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h   78 (304)
T cd05096           2 FPRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDAN---KNARNDFLKEVKILSRLKD   78 (304)
T ss_pred             CchhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCC---HHHHHHHHHHHHHHhhcCC
Confidence            45689999999999999999999875432            11334699999865432   2345567789999999999


Q ss_pred             CccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 042539           83 PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-----------------DRVFSPSVIRFYLSEIICAIEHLHNMG  145 (412)
Q Consensus        83 pnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~-----------------~~~l~~~~~~~~~~qi~~aL~yLH~~~  145 (412)
                      |||+++++++.+.+.+|+||||+.+|+|..++....                 ...++...+..++.||+.||.|||++|
T Consensus        79 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~  158 (304)
T cd05096          79 PNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN  158 (304)
T ss_pred             CCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999988775432                 123677888999999999999999999


Q ss_pred             ceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCcccccccc
Q 042539          146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTK  225 (412)
Q Consensus       146 iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (412)
                      |+||||||+|||++.++.+||+|||+++.......                                             
T Consensus       159 ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~---------------------------------------------  193 (304)
T cd05096         159 FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDY---------------------------------------------  193 (304)
T ss_pred             ccccCcchhheEEcCCccEEECCCccceecccCce---------------------------------------------
Confidence            99999999999999999999999999875421100                                             


Q ss_pred             ccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh--CCCCCCCCCHHHHHHHHhc-
Q 042539          226 SARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY--GTTPFRGKNRKETFRNVLM-  302 (412)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~--g~~Pf~~~~~~~~~~~i~~-  302 (412)
                                      ........++..|+|||++.+..++.++|||||||++|+|++  +..||.+.+..+....+.. 
T Consensus       194 ----------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~  257 (304)
T cd05096         194 ----------------YRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEF  257 (304)
T ss_pred             ----------------eEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHH
Confidence                            001123456789999999988889999999999999999986  6789988776665443321 


Q ss_pred             --C------CCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          303 --K------TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       303 --~------~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                        .      ....+.++..+.+||.+||..||.+||    ++.++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP----s~~~i~  299 (304)
T cd05096         258 FRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERP----SFSDIH  299 (304)
T ss_pred             hhhccccccccCCCCCCHHHHHHHHHHccCCchhCc----CHHHHH
Confidence              1      012235678899999999999999999    577774

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=7e-44  Score=339.14  Aligned_cols=253  Identities=27%  Similarity=0.395  Sum_probs=206.8

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++++.||.|+||.||+|+++.++.    .||||.+.....  .......+.+|++++++++||||+++++++.+++..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   74 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGE----VVALKKIRLDTE--TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKL   74 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCC----EEEEEEcccccc--ccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcE
Confidence            58999999999999999999877554    499999865432  122345677799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      ++||||+. ++|..++.......+++..++.++.|++.||+|||++|++||||+|+||+++.++.+||+|||+++.....
T Consensus        75 ~~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~  153 (284)
T cd07860          75 YLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  153 (284)
T ss_pred             EEEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccC
Confidence            99999996 57877776655567999999999999999999999999999999999999999999999999998644210


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........+++.|+|||
T Consensus       154 ---------------------------------------------------------------~~~~~~~~~~~~y~aPE  170 (284)
T cd07860         154 ---------------------------------------------------------------VRTYTHEVVTLWYRAPE  170 (284)
T ss_pred             ---------------------------------------------------------------ccccccccccccccCCe
Confidence                                                                           00111235688999999


Q ss_pred             eecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---------------------C---------CC
Q 042539          259 VVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---------------------P---------EF  307 (412)
Q Consensus       259 ~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---------------------~---------~~  307 (412)
                      ++.+.. ++.++|||||||++|+|++|..||.+.+......++....                     +         ..
T Consensus       171 ~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (284)
T cd07860         171 ILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVV  250 (284)
T ss_pred             EEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHc
Confidence            987754 5889999999999999999999998877655443332110                     0         01


Q ss_pred             CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       308 ~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      +..+.+++++|.+||+.||++||    +++++++||||
T Consensus       251 ~~~~~~~~~li~~~l~~~P~~Rp----t~~~~l~~~~f  284 (284)
T cd07860         251 PPLDEDGRDLLSQMLHYDPNKRI----SAKAALAHPFF  284 (284)
T ss_pred             ccCCHHHHHHHHHhcCCCcccCC----CHHHHhcCCCC
Confidence            23567889999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=5.6e-44  Score=336.75  Aligned_cols=252  Identities=23%  Similarity=0.358  Sum_probs=205.2

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||.||+++++.++.    .||+|++.....    .....+.+|+.++++++|+||+++++++..+
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~----~~aik~~~~~~~----~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~   78 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLHTGE----LAAVKIIKLEPG----DDFSLIQQEIFMVKECKHCNIVAYFGSYLSR   78 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECCCCe----EEEEEEEecCcc----chHHHHHHHHHHHHhcCCCCeeeeeEEEEeC
Confidence            45689999999999999999999876544    499999865432    1233566799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+||||+.+++|..++...  +.+++..+..++.|++.||.|||++||+||||||+||+++.+|.+||+|||++...
T Consensus        79 ~~~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~  156 (267)
T cd06646          79 EKLWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKI  156 (267)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceee
Confidence            9999999999999998877543  35899999999999999999999999999999999999999999999999998754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                               ........|++.|+
T Consensus       157 ~~~---------------------------------------------------------------~~~~~~~~~~~~y~  173 (267)
T cd06646         157 TAT---------------------------------------------------------------IAKRKSFIGTPYWM  173 (267)
T ss_pred             ccc---------------------------------------------------------------ccccCccccCcccc
Confidence            210                                                               01122456889999


Q ss_pred             cceeecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---CCC---CCCChHHHHHHHHhhhhCC
Q 042539          256 SPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---PEF---VGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       256 APE~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---~~~---~~~~~~~~dli~~~L~~dP  326 (412)
                      |||.+.+   ..++.++|+|||||++|||++|+.||...+.......+....   +..   ...+..+.+||++||..||
T Consensus       174 ~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P  253 (267)
T cd06646         174 APEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNP  253 (267)
T ss_pred             CHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCCh
Confidence            9999853   346789999999999999999999997654433322222211   111   2346889999999999999


Q ss_pred             CccCCCCCChhhhhcCCC
Q 042539          327 VKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~f  344 (412)
                      ++||    +++++++|+|
T Consensus       254 ~~Rp----~~~~il~~l~  267 (267)
T cd06646         254 KKRP----TAERLLTHLF  267 (267)
T ss_pred             hhCc----CHHHHhcCCC
Confidence            9999    6999999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1.7e-43  Score=333.13  Aligned_cols=259  Identities=24%  Similarity=0.364  Sum_probs=211.2

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh--hhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +|++.+.||+|+||.||++.+. +    +..+|+|.+.....  .........+.+|+++++.++|+||+++++++.+++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~-~----~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   75 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTN-Q----GQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDN   75 (265)
T ss_pred             CccccceEeccCCeEEEEEEEc-C----CCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCC
Confidence            5889999999999999999763 2    33499999865432  122334456888999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|++|||+.|++|..++....  .+++..+..++.|++.||+|||+.||+|+||||+||+++.+|.++|+|||++....
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  153 (265)
T cd06631          76 TISIFMEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLA  153 (265)
T ss_pred             eEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhh
Confidence            9999999999999988876543  48999999999999999999999999999999999999999999999999987542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .....                                                         ...........|+..|+|
T Consensus       154 ~~~~~---------------------------------------------------------~~~~~~~~~~~~~~~~~~  176 (265)
T cd06631         154 WVGLH---------------------------------------------------------GTHSNMLKSMHGTPYWMA  176 (265)
T ss_pred             hcccc---------------------------------------------------------ccccccccccCCCccccC
Confidence            11000                                                         000111234568999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---C-CCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---P-EFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---~-~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||.+.+..++.++|+|||||++|+|++|..||...+.......+....   + .....+.++.++|.+||..+|.+||  
T Consensus       177 pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp--  254 (265)
T cd06631         177 PEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERP--  254 (265)
T ss_pred             hhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCC--
Confidence            999999889999999999999999999999998876555444443321   2 2234578899999999999999999  


Q ss_pred             CCChhhhhcCCCC
Q 042539          333 LRGACEIKEHVFF  345 (412)
Q Consensus       333 ~~~~~e~l~h~ff  345 (412)
                        ++.++++||||
T Consensus       255 --~~~~~l~~~~~  265 (265)
T cd06631         255 --SALQLLRHDFL  265 (265)
T ss_pred             --CHHHHhcCCCC
Confidence              79999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=1.4e-43  Score=337.00  Aligned_cols=259  Identities=34%  Similarity=0.627  Sum_probs=204.9

Q ss_pred             eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHH---HHHHhhcCCCccceeeeeEEeCCeEEEE
Q 042539           25 ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE---IRVLSRLSHPFLPKLLGSLETDEFLAWA  101 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~E---i~il~~l~hpnIv~l~~~~~~~~~~~lv  101 (412)
                      .||+|+||.||+|++..++.    .||+|++.+........ ......|   ++.+....|+||+++++++...+.+|+|
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v   75 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGK----MYAMKCLDKKRIKMKQG-ETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFI   75 (278)
T ss_pred             CcccCCCeEEEEEEEecCCC----EEEEEEeeccccccchh-HHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEE
Confidence            48999999999999876444    49999997754332111 1112223   3445555799999999999999999999


Q ss_pred             eeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhh
Q 042539          102 VPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF  181 (412)
Q Consensus       102 ~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~  181 (412)
                      |||+.||+|..++...  +.+++..++.++.|++.||.|||+.+|+||||||+||+++.++.+||+|||+++.+..    
T Consensus        76 ~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~----  149 (278)
T cd05606          76 LDLMNGGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK----  149 (278)
T ss_pred             EecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCc----
Confidence            9999999998776543  4599999999999999999999999999999999999999999999999999864311    


Q ss_pred             hhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeec
Q 042539          182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR  261 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~  261 (412)
                                                                                   ......+|+..|+|||++.
T Consensus       150 -------------------------------------------------------------~~~~~~~~~~~y~aPE~~~  168 (278)
T cd05606         150 -------------------------------------------------------------KKPHASVGTHGYMAPEVLQ  168 (278)
T ss_pred             -------------------------------------------------------------cCCcCcCCCcCCcCcHHhc
Confidence                                                                         0112346899999999987


Q ss_pred             CC-CCCchhhHHHHHHHHHHHhhCCCCCCCC---CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CC
Q 042539          262 GD-GHEFAVDWWALGILTYEMLYGTTPFRGK---NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RG  335 (412)
Q Consensus       262 ~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~---~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~  335 (412)
                      +. .++.++|+||+||++|+|++|+.||.+.   ........+....+..+ ..+.++.++|.+||..+|.+|+.+. .+
T Consensus       169 ~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~  248 (278)
T cd05606         169 KGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRG  248 (278)
T ss_pred             CCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCC
Confidence            54 5789999999999999999999999875   33333333333333333 3578999999999999999999542 26


Q ss_pred             hhhhhcCCCCCCCCchhhcc
Q 042539          336 ACEIKEHVFFKGVRWDLLTD  355 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~~~~~  355 (412)
                      +.++++||||++.+|.....
T Consensus       249 ~~~ll~~~~~~~~~~~~~~~  268 (278)
T cd05606         249 AQEVKEHPFFRSLDWQMVFL  268 (278)
T ss_pred             HHHHHhCccccCCCchHhhh
Confidence            99999999999999986643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=1.6e-43  Score=336.65  Aligned_cols=254  Identities=31%  Similarity=0.472  Sum_probs=210.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++.+.||+|+||.||+|.+..++..    ||+|++......  ......+.+|+.+++.++|+||+++++++..+..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~----~~vK~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   74 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGET----VALKKVALRRLE--GGIPNQALREIKALQACQHPYVVKLLDVFPHGSGF   74 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCce----EEEEEEEccccc--chhhHHHHHHHHHHHhCCCCCCcceeeEEecCCee
Confidence            689999999999999999998775544    999999765432  23345677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+ |++|..++.... ..+++.+++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||++......
T Consensus        75 ~~v~e~~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~  152 (286)
T cd07832          75 VLVMEYM-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEE  152 (286)
T ss_pred             EEEeccc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCC
Confidence            9999999 999988776543 46999999999999999999999999999999999999999999999999998754211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      .                                                              ........|+..|+|||
T Consensus       153 ~--------------------------------------------------------------~~~~~~~~~~~~y~aPE  170 (286)
T cd07832         153 E--------------------------------------------------------------PRLYSHQVATRWYRAPE  170 (286)
T ss_pred             C--------------------------------------------------------------CCccccccCcccccCce
Confidence            0                                                              00112346899999999


Q ss_pred             eecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-------------------------------C
Q 042539          259 VVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-------------------------------E  306 (412)
Q Consensus       259 ~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-------------------------------~  306 (412)
                      .+.+.. ++.++|||||||++|+|++|.+||.+.+....+..+.....                               .
T Consensus       171 ~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (286)
T cd07832         171 LLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEI  250 (286)
T ss_pred             eeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHh
Confidence            987654 58999999999999999999999988776665554432100                               0


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      ++..+..+.+||++||..||.+||    +++++++||||.
T Consensus       251 ~~~~~~~~~~li~~~l~~~p~~R~----~~~~~l~h~~~~  286 (286)
T cd07832         251 FPDASPEALDLLKGLLVYDPSKRL----SAAEALRHPYFT  286 (286)
T ss_pred             CCCccHHHHHHHHHHhccChhhCC----CHHHHhhCcCcC
Confidence            123467899999999999999999    699999999984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=3.4e-44  Score=355.73  Aligned_cols=262  Identities=20%  Similarity=0.280  Sum_probs=209.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      .+.+..++|++.+.||+|+||.||+|.+...+. .+...||+|+++....   ......+.+|+.+++.+ +|+|||+++
T Consensus        32 ~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~il~~l~~h~nIv~~~  108 (374)
T cd05106          32 KWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH---TDEREALMSELKILSHLGQHKNIVNLL  108 (374)
T ss_pred             cccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC---HHHHHHHHHHHHHHHhhccCCceeeEe
Confidence            456778899999999999999999998765443 2445699999975432   22345677899999999 799999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhC---------------------------------------------------
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQN---------------------------------------------------  118 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~---------------------------------------------------  118 (412)
                      +++.....+|+|||||.||+|.+++....                                                   
T Consensus       109 ~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (374)
T cd05106         109 GACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVS  188 (374)
T ss_pred             eEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcc
Confidence            99999999999999999999988875421                                                   


Q ss_pred             -----------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhh
Q 042539          119 -----------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF  181 (412)
Q Consensus       119 -----------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~  181 (412)
                                       ...+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....... 
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~-  267 (374)
T cd05106         189 SSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSN-  267 (374)
T ss_pred             ccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcc-
Confidence                             12478889999999999999999999999999999999999999999999999875421100 


Q ss_pred             hhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeec
Q 042539          182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR  261 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~  261 (412)
                                                                                  .....+..++..|||||++.
T Consensus       268 ------------------------------------------------------------~~~~~~~~~~~~y~aPE~~~  287 (374)
T cd05106         268 ------------------------------------------------------------YVVKGNARLPVKWMAPESIF  287 (374)
T ss_pred             ------------------------------------------------------------eeeccCCCCccceeCHHHhc
Confidence                                                                        00111233567899999999


Q ss_pred             CCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCC-CCCChHHHHHHHHhhhhCCCccCCCCCChh
Q 042539          262 GDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEF-VGQRTALTDLIQRLLEKDPVKRLGYLRGAC  337 (412)
Q Consensus       262 ~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~-~~~~~~~~dli~~~L~~dP~~R~~~~~~~~  337 (412)
                      +..++.++|||||||++|+|++ |..||........+.......  +.. ...++++.++|.+||+.||.+||    ++.
T Consensus       288 ~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RP----s~~  363 (374)
T cd05106         288 DCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERP----TFS  363 (374)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCc----CHH
Confidence            8889999999999999999997 999998865544444443322  112 23478999999999999999999    577


Q ss_pred             hhhc
Q 042539          338 EIKE  341 (412)
Q Consensus       338 e~l~  341 (412)
                      ++.+
T Consensus       364 ~l~~  367 (374)
T cd05106         364 QISQ  367 (374)
T ss_pred             HHHH
Confidence            7664

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.4e-44  Score=337.03  Aligned_cols=256  Identities=29%  Similarity=0.486  Sum_probs=215.7

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||.|+||.||++++..++    ..||+|++.....   ......+.+|+++++.++|+||+++++++.++..
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~----~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   73 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTN----QVVAIKVIDLEEA---EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSK   73 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCC----eEEEEEEeecccc---chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCe
Confidence            57999999999999999999987654    4499999975532   2223456679999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|+||+.|++|.+++...   .+++..+..++.|++.||.|||++|++||||+|+||+++.+|.++|+|||+++.+..
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~  150 (274)
T cd06609          74 LWIIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTS  150 (274)
T ss_pred             EEEEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecc
Confidence            99999999999998877643   589999999999999999999999999999999999999999999999999976531


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                               .......|++.|+||
T Consensus       151 ~~---------------------------------------------------------------~~~~~~~~~~~y~~P  167 (274)
T cd06609         151 TM---------------------------------------------------------------SKRNTFVGTPFWMAP  167 (274)
T ss_pred             cc---------------------------------------------------------------cccccccCCccccCh
Confidence            10                                                               112245688999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-CCC--CCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-EFV--GQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~~~--~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      |.+.+..++.++|||||||++|+|++|..||...+.......+....+ ...  ..+.++.++|.+||..+|.+||    
T Consensus       168 E~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rp----  243 (274)
T cd06609         168 EVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERP----  243 (274)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCc----
Confidence            999988899999999999999999999999988776555554444322 222  2578899999999999999999    


Q ss_pred             ChhhhhcCCCCCCCCc
Q 042539          335 GACEIKEHVFFKGVRW  350 (412)
Q Consensus       335 ~~~e~l~h~ff~~~~~  350 (412)
                      +++++++|+||.+..-
T Consensus       244 t~~~il~~~~~~~~~~  259 (274)
T cd06609         244 SAKELLKHKFIKKAKK  259 (274)
T ss_pred             CHHHHhhChhhcCCCc
Confidence            7999999999987653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.6e-43  Score=336.78  Aligned_cols=261  Identities=20%  Similarity=0.282  Sum_probs=213.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++.+++|++.+.||+|+||+||+|.+...+......||+|.+.....   ......+.+|+.+++.++|+||+++++++.
T Consensus         1 ~~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~   77 (283)
T cd05090           1 ELPLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN---PQQWGEFQQEASLMAELHHPNIVCLLGVVT   77 (283)
T ss_pred             CCChhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC---HHHHHHHHHHHHHHhhCCCCCeeeEEEEEe
Confidence            36789999999999999999999987655555666799999965332   233456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhC---------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQN---------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI  158 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~---------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl  158 (412)
                      .++..|+||||+.+++|..++....               ...+++.++..++.|++.||.|||++||+||||||+|||+
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili  157 (283)
T cd05090          78 QEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILI  157 (283)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEE
Confidence            9999999999999999988875332               1247889999999999999999999999999999999999


Q ss_pred             ccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          159 RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      +.++.+||+|||+++......                                                           
T Consensus       158 ~~~~~~kl~dfg~~~~~~~~~-----------------------------------------------------------  178 (283)
T cd05090         158 GEQLHVKISDLGLSREIYSAD-----------------------------------------------------------  178 (283)
T ss_pred             cCCCcEEeccccccccccCCc-----------------------------------------------------------
Confidence            999999999999997652110                                                           


Q ss_pred             cCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHH
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALT  315 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~  315 (412)
                        .........++..|+|||++.+..++.++|+|||||++|||++ |.+||.+.+.......+....  +.....+.++.
T Consensus       179 --~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (283)
T cd05090         179 --YYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMY  256 (283)
T ss_pred             --ceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHH
Confidence              0011223346778999999988889999999999999999998 999999887766665554433  12234678999


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ++|.+||+.||++||    ++.+++++
T Consensus       257 ~li~~cl~~~p~~Rp----~~~~i~~~  279 (283)
T cd05090         257 SLMTECWQEGPSRRP----RFKDIHTR  279 (283)
T ss_pred             HHHHHHcccCcccCc----CHHHHHHH
Confidence            999999999999999    56777653

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=4.8e-44  Score=335.55  Aligned_cols=254  Identities=36%  Similarity=0.617  Sum_probs=211.8

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++.+.||.|+||.||+|++..++.    .||+|++.+..... ....+.+.+|++++++++||||+++++++.+++.+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   75 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKK----MFAMKYMNKQKCVE-KGSVRNVLNERRILQELNHPFLVNLWYSFQDEENM   75 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCc----EEEEEEEehhhhcc-hhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeE
Confidence            58999999999999999999876544    49999997765422 23456788899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+|+||+.|++|..++...  ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++......
T Consensus        76 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  153 (258)
T cd05578          76 YLVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPD  153 (258)
T ss_pred             EEEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCC
Confidence            9999999999998877654  35999999999999999999999999999999999999999999999999988654211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                      .......|+..|+|||
T Consensus       154 ----------------------------------------------------------------~~~~~~~~~~~y~~PE  169 (258)
T cd05578         154 ----------------------------------------------------------------TLTTSTSGTPGYMAPE  169 (258)
T ss_pred             ----------------------------------------------------------------ccccccCCChhhcCHH
Confidence                                                                            0112345788999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH---HHHHHHHhcCCC-CCCCCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR---KETFRNVLMKTP-EFVGQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~~~~~i~~~~~-~~~~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ++.+..++.++|+|||||++|+|++|..||...+.   ...........+ .....+..+.++|++||..||.+|++.. 
T Consensus       170 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~-  248 (258)
T cd05578         170 VLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDN-  248 (258)
T ss_pred             HHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhccccccCcccCcHHHHHHHHHHccCChhHcCCcc-
Confidence            99988889999999999999999999999988763   333333332222 2234578999999999999999999521 


Q ss_pred             ChhhhhcCCCC
Q 042539          335 GACEIKEHVFF  345 (412)
Q Consensus       335 ~~~e~l~h~ff  345 (412)
                       ..++++||||
T Consensus       249 -~~~l~~~~~~  258 (258)
T cd05578         249 -LKDLKNHPYF  258 (258)
T ss_pred             -HHHHhcCCCC
Confidence             4999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=2.3e-43  Score=330.34  Aligned_cols=250  Identities=27%  Similarity=0.460  Sum_probs=211.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++.+.||+|+||.||++.+..++..    ||+|.++....   ......+.+|+.+++.++|+||+++++.+.+++.+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~----~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   73 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQK----YAMKEIRLPKS---SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHL   73 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCce----EEEEEEEcCcc---hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEE
Confidence            689999999999999999998875544    99999865432   22345666799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |++|||+.|++|..++.......+++..+..++.|++.||.|||++||+|+||||+||+++.++.++|+|||++......
T Consensus        74 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  153 (255)
T cd08219          74 YIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSP  153 (255)
T ss_pred             EEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccc
Confidence            99999999999988776555556899999999999999999999999999999999999999999999999998654211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........|++.|+|||
T Consensus       154 ---------------------------------------------------------------~~~~~~~~~~~~~~aPE  170 (255)
T cd08219         154 ---------------------------------------------------------------GAYACTYVGTPYYVPPE  170 (255)
T ss_pred             ---------------------------------------------------------------ccccccccCCccccCHH
Confidence                                                                           11122456899999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      ++.+..++.++|+|||||++|+|++|..||...+.......+.....  .....+..+.+||.+||+.||.+||    ++
T Consensus       171 ~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp----~~  246 (255)
T cd08219         171 IWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRP----SA  246 (255)
T ss_pred             HHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCC----CH
Confidence            99988899999999999999999999999998887776666654432  2234578899999999999999999    68


Q ss_pred             hhhhcC
Q 042539          337 CEIKEH  342 (412)
Q Consensus       337 ~e~l~h  342 (412)
                      .+++.-
T Consensus       247 ~~il~~  252 (255)
T cd08219         247 TTILSR  252 (255)
T ss_pred             HHHhhc
Confidence            888763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.6e-43  Score=357.99  Aligned_cols=250  Identities=23%  Similarity=0.281  Sum_probs=197.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ...|.+.+.||+|+||.||+|.+..++.    .||||.....          ...+|+++|++++|+|||++++++..++
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~----~vavK~~~~~----------~~~~E~~iL~~L~HpnIv~l~~~~~~~~  233 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQ----RVVVKAGWYA----------SSVHEARLLRRLSHPAVLALLDVRVVGG  233 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCC----EEEEeccccc----------CHHHHHHHHHHCCCCCCCcEEEEEEECC
Confidence            4579999999999999999999887544    4999964221          2345999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ..|+|||++. ++|..++... ...+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...
T Consensus       234 ~~~lv~e~~~-~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~  311 (461)
T PHA03211        234 LTCLVLPKYR-SDLYTYLGAR-LRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFAR  311 (461)
T ss_pred             EEEEEEEccC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecc
Confidence            9999999995 5776665543 2359999999999999999999999999999999999999999999999999997542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ...                                                             .......++||+.|+|
T Consensus       312 ~~~-------------------------------------------------------------~~~~~~~~~GT~~Y~A  330 (461)
T PHA03211        312 GSW-------------------------------------------------------------STPFHYGIAGTVDTNA  330 (461)
T ss_pred             ccc-------------------------------------------------------------ccccccccCCCcCCcC
Confidence            100                                                             0011124579999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC--------HHHHHHHHhcCC---CC-------------------
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN--------RKETFRNVLMKT---PE-------------------  306 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--------~~~~~~~i~~~~---~~-------------------  306 (412)
                      ||++.+..++.++|||||||++|||++|..++....        ..++.+.+....   ..                   
T Consensus       331 PE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  410 (461)
T PHA03211        331 PEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAAR  410 (461)
T ss_pred             HHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhc
Confidence            999999999999999999999999999876543211        122222111100   00                   


Q ss_pred             -------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          307 -------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       307 -------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                                   +...+.++.+||.+||+.||.+||    ++.|+|+||||+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RP----sa~elL~hp~f~~  460 (461)
T PHA03211        411 NRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRP----SAAELLRLPLFQS  460 (461)
T ss_pred             ccCCccCCcchhhhccccchHHHHHHHHcccChhhCc----CHHHHhhCcccCC
Confidence                         012345789999999999999999    6999999999974

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=2.5e-43  Score=329.61  Aligned_cols=253  Identities=28%  Similarity=0.424  Sum_probs=215.2

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++++.||+|+||.||+|.+..++    ..+|+|++.......  .....+.+|+++++.++|+||+++++.+..++.+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~----~~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   74 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQ----KLVIIKQIPVEQMTK--DERLAAQNECQVLKLLSHPNIIEYYENFLEDKAL   74 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCC----cEEEEEEEecccccc--HHHHHHHHHHHHHhhCCCCchhheeeeEecCCEE
Confidence            5899999999999999999987644    449999997654422  3356677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEccccccchhhc
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDLSRNLVK  177 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFGla~~~~~  177 (412)
                      ++||||+.|++|.+++.......+++..+..++.|++.||.|||++||+|+||||+||+++.++ .+||+|||++.....
T Consensus        75 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~  154 (256)
T cd08220          75 MIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSS  154 (256)
T ss_pred             EEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCC
Confidence            9999999999999888765555689999999999999999999999999999999999998664 579999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                                .......|+..|+||
T Consensus       155 ~----------------------------------------------------------------~~~~~~~~~~~y~aP  170 (256)
T cd08220         155 K----------------------------------------------------------------SKAYTVVGTPCYISP  170 (256)
T ss_pred             C----------------------------------------------------------------ccccccccCCcccCc
Confidence            0                                                                111234688999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-C-CCCCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-E-FVGQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~-~~~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      |.+.+..++.++|+|||||++|+|++|..||.+.+.......+..... . ....+.++.++|.+||..||.+||    +
T Consensus       171 E~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp----t  246 (256)
T cd08220         171 ELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRP----Q  246 (256)
T ss_pred             hhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHccCChhhCC----C
Confidence            999988889999999999999999999999998877776666654332 2 234678999999999999999999    7


Q ss_pred             hhhhhcCCCC
Q 042539          336 ACEIKEHVFF  345 (412)
Q Consensus       336 ~~e~l~h~ff  345 (412)
                      +.++++||||
T Consensus       247 ~~~ll~~p~~  256 (256)
T cd08220         247 LSQIMAQPIC  256 (256)
T ss_pred             HHHHhhCCCC
Confidence            9999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=2e-43  Score=333.49  Aligned_cols=257  Identities=18%  Similarity=0.265  Sum_probs=210.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +++.++|++.+.||+|+||.||++.++... .....||+|.++....   ......+.+|+.++++++||||+++++++.
T Consensus         1 ~i~~~~~~~~~~ig~G~fg~V~~~~~~~~~-~~~~~vaik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   76 (266)
T cd05064           1 ELDNKSIKIERILGTGRFGELCRGCLKLPS-KRELPVAIHTLRAGCS---DKQRRGFLAEALTLGQFDHSNIVRLEGVIT   76 (266)
T ss_pred             CCchHHeEEeeeecccCCCeEEEEEEecCC-CceeeEEEEecCCCCC---HHHHHHHHHHHHHHhcCCCCCcCeEEEEEe
Confidence            356789999999999999999999875432 2455699999975432   223456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .++.+|+||||+.||+|..++.... ..+++..++.++.|++.||+|||++|++||||||+|||++.++.+|++|||.+.
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~  155 (266)
T cd05064          77 RGNTMMIVTEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQ  155 (266)
T ss_pred             cCCCcEEEEEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccc
Confidence            9999999999999999988876543 458999999999999999999999999999999999999999999999999775


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ......                                                              ........++..
T Consensus       156 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~~  173 (266)
T cd05064         156 EDKSEA--------------------------------------------------------------IYTTMSGKSPVL  173 (266)
T ss_pred             cccccc--------------------------------------------------------------hhcccCCCCcee
Confidence            421100                                                              000112345678


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHh-hCCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell-~g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||++.+..++.++|||||||++||++ +|..||.+.+..+....+....  +.....+..+.+++.+||..+|.+||
T Consensus       174 y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP  253 (266)
T cd05064         174 WAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERP  253 (266)
T ss_pred             ecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCC
Confidence            99999999999999999999999999977 5999999988777766665432  33345678899999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          +++++++
T Consensus       254 ----~~~~i~~  260 (266)
T cd05064         254 ----RFSQIHS  260 (266)
T ss_pred             ----CHHHHHH
Confidence                5677664

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=2e-43  Score=330.77  Aligned_cols=254  Identities=27%  Similarity=0.455  Sum_probs=216.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++++.||+|+||.||++++...+.    .||+|.+.......  .....+.+|+.++++++|+||+++++++...+..
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~----~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGK----QYVIKEINISKMSP--KEREESRKEVAVLSNMKHPNIVQYQESFEENGNL   74 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCC----EEEEEEEEhHhCCh--HHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeE
Confidence            58999999999999999999876544    49999997654322  2345677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.|++|..++.......+++.++..++.|++.||.|||++|++|+||+|+|||++.++.++|+|||++......
T Consensus        75 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~  154 (256)
T cd08218          75 YIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNST  154 (256)
T ss_pred             EEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcc
Confidence            99999999999988876654446899999999999999999999999999999999999999999999999998754211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      .                                                               .......|++.|+|||
T Consensus       155 ~---------------------------------------------------------------~~~~~~~~~~~~~~pe  171 (256)
T cd08218         155 V---------------------------------------------------------------ELARTCIGTPYYLSPE  171 (256)
T ss_pred             h---------------------------------------------------------------hhhhhccCCccccCHH
Confidence            1                                                               0112345888999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      ++.+..++.++|+|||||++|+|++|..||...+..+....++.+...  ....+.++.++|.+||+.+|.+||    ++
T Consensus       172 ~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----~~  247 (256)
T cd08218         172 ICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRP----SV  247 (256)
T ss_pred             HhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhhCChhhCc----CH
Confidence            999888889999999999999999999999988877777776654422  234578899999999999999999    69


Q ss_pred             hhhhcCCCC
Q 042539          337 CEIKEHVFF  345 (412)
Q Consensus       337 ~e~l~h~ff  345 (412)
                      .++++|+||
T Consensus       248 ~~vl~~~~~  256 (256)
T cd08218         248 NSILEKNFI  256 (256)
T ss_pred             HHHhhCcCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=2.3e-43  Score=338.71  Aligned_cols=255  Identities=27%  Similarity=0.402  Sum_probs=213.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ..+|++++.||.|+||.||++.+...+.    .||+|.+.....    .....+.+|+.+++.++|+||+++++++..++
T Consensus        18 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~----~v~iK~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   89 (296)
T cd06655          18 KKKYTRYEKIGQGASGTVFTAIDVATGQ----EVAIKQINLQKQ----PKKELIINEILVMKELKNPNIVNFLDSFLVGD   89 (296)
T ss_pred             cceEEEEEEEecCCCeEEEEEEEcCCCc----EEEEEEEecccC----chHHHHHHHHHHHHhcCCCceeeeeeeEecCc
Confidence            4679999999999999999998876544    499999865432    12345677999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+|+||+.|++|..++..   ..+++.++..++.|++.||.|||++|++||||||+||+++.+|.+||+|||++....
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~  166 (296)
T cd06655          90 ELFVVMEYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQIT  166 (296)
T ss_pred             eEEEEEEecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcc
Confidence            99999999999999877653   248999999999999999999999999999999999999999999999999886542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........|+..|+|
T Consensus       167 ~~---------------------------------------------------------------~~~~~~~~~~~~y~a  183 (296)
T cd06655         167 PE---------------------------------------------------------------QSKRSTMVGTPYWMA  183 (296)
T ss_pred             cc---------------------------------------------------------------cccCCCcCCCccccC
Confidence            10                                                               011123468899999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC----CCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP----EFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~----~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||.+.+..++.++|+|||||++|+|++|+.||.+.+.......+.....    .....++.+.+||.+||..||.+|+  
T Consensus       184 PE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp--  261 (296)
T cd06655         184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRG--  261 (296)
T ss_pred             cchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCC--
Confidence            9999988889999999999999999999999998876665554443221    2234578899999999999999999  


Q ss_pred             CCChhhhhcCCCCCCCC
Q 042539          333 LRGACEIKEHVFFKGVR  349 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~~  349 (412)
                        ++.+++.|+||+...
T Consensus       262 --t~~~il~~~~~~~~~  276 (296)
T cd06655         262 --SAKELLQHPFLKLAK  276 (296)
T ss_pred             --CHHHHhhChHhhhcc
Confidence              699999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.4e-43  Score=336.87  Aligned_cols=254  Identities=24%  Similarity=0.428  Sum_probs=208.1

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~   94 (412)
                      ..+.|++.+.||.|+||.||+|++...+.    .||+|++....     .....+..|+.+++.+ +|+||+++++++..
T Consensus        14 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~----~~a~K~~~~~~-----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636          14 PAGIFELVEVVGNGTYGQVYKGRHVKTGQ----LAAIKVMDVTE-----DEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhhheeeccCCCeEEEEEEEcCCCc----EEEEEEEecCh-----HHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            44799999999999999999999876544    49999986542     1234456789999999 59999999999853


Q ss_pred             ------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           95 ------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        95 ------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                            +..+|++|||+.+|+|..++.......+++..+..++.||+.||.|||++||+|+||||+||+++.++.++|+|
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~d  164 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVD  164 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEee
Confidence                  46789999999999999888765556689999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||++......                                                               .......
T Consensus       165 fg~~~~~~~~---------------------------------------------------------------~~~~~~~  181 (282)
T cd06636         165 FGVSAQLDRT---------------------------------------------------------------VGRRNTF  181 (282)
T ss_pred             Ccchhhhhcc---------------------------------------------------------------ccCCCcc
Confidence            9998654210                                                               0112345


Q ss_pred             ccCCCCccceeec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---CCCCCChHHHHHHHH
Q 042539          249 VGTEEYVSPEVVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP---EFVGQRTALTDLIQR  320 (412)
Q Consensus       249 ~gt~~Y~APE~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~dli~~  320 (412)
                      +|++.|+|||++.     +..++.++|+|||||++|+|++|..||...........+....+   .....+..+.+||++
T Consensus       182 ~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  261 (282)
T cd06636         182 IGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEG  261 (282)
T ss_pred             cccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHH
Confidence            7899999999986     34578899999999999999999999987665554443333221   122467899999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCC
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ||..||.+||    ++.++++||||
T Consensus       262 cl~~~p~~Rp----~~~ell~~~~~  282 (282)
T cd06636         262 CLVKNYLSRP----STEQLLKHPFI  282 (282)
T ss_pred             HhCCChhhCc----CHHHHhcCCCC
Confidence            9999999999    79999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.3e-43  Score=332.50  Aligned_cols=262  Identities=39%  Similarity=0.691  Sum_probs=217.2

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||+|+||.||+|++..++.    .||+|++.+..... ......+.+|+++++.++|+||+++++.+..+...|++|||+
T Consensus         1 lg~g~~~~vy~~~~~~~~~----~~~~k~~~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   75 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGD----IYAIKVIKKADMIR-KNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYL   75 (265)
T ss_pred             CCCCCceEEEEEEECCCCC----EEEEEEecchhhhh-hhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecC
Confidence            6899999999999876544    49999997665422 345667788999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhc
Q 042539          106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS  185 (412)
Q Consensus       106 ~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~  185 (412)
                      .|++|..++....  .+++..+..++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++...........  
T Consensus        76 ~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~--  151 (265)
T cd05579          76 PGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINL--  151 (265)
T ss_pred             CCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccc--
Confidence            9999988876544  589999999999999999999999999999999999999999999999999875421100000  


Q ss_pred             ccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCC
Q 042539          186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  265 (412)
                                                                           ...........++..|+|||.+.+..+
T Consensus       152 -----------------------------------------------------~~~~~~~~~~~~~~~~~~Pe~~~~~~~  178 (265)
T cd05579         152 -----------------------------------------------------NDDEKEDKRIVGTPDYIAPEVILGQGH  178 (265)
T ss_pred             -----------------------------------------------------ccccccccCcccCccccCHHHhcCCCC
Confidence                                                                 000112234568889999999988888


Q ss_pred             CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCC---ChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          266 EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQ---RTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       266 ~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~---~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +.++|+|||||++|+|++|..||......+.+..+......++..   +..+.+||.+||+.+|.+||++ ..+.++++|
T Consensus       179 ~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~-~~~~~~l~~  257 (265)
T cd05579         179 SKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGA-KSIEEIKNH  257 (265)
T ss_pred             CcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCC-ccHHHHhcC
Confidence            999999999999999999999999988888777776544444333   7899999999999999999952 234999999


Q ss_pred             CCCCCCCc
Q 042539          343 VFFKGVRW  350 (412)
Q Consensus       343 ~ff~~~~~  350 (412)
                      |||++++|
T Consensus       258 ~~~~~~~~  265 (265)
T cd05579         258 PFFKGIDW  265 (265)
T ss_pred             ccccCCCC
Confidence            99999998

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=2.2e-43  Score=338.78  Aligned_cols=254  Identities=28%  Similarity=0.403  Sum_probs=211.5

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ..+|++++.||+|+||.||++.+..++.    .||+|.+......    ....+.+|+.+++.+.|+||+++++.+..+.
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~----~v~ik~~~~~~~~----~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~   90 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQ----EVAIRQMNLQQQP----KKELIINEILVMRENKNPNIVNYLDSYLVGD   90 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCc----EEEEEEEecCCcc----hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC
Confidence            3699999999999999999999876554    4999999765432    2345667999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ..|+||||+.|++|..++..   ..+++.++..++.|++.||.|||+.||+||||||+|||++.++.+||+|||++....
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~  167 (296)
T cd06654          91 ELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  167 (296)
T ss_pred             EEEEeecccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhcc
Confidence            99999999999999887753   248999999999999999999999999999999999999999999999999886432


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........|++.|+|
T Consensus       168 ~~---------------------------------------------------------------~~~~~~~~~~~~y~a  184 (296)
T cd06654         168 PE---------------------------------------------------------------QSKRSTMVGTPYWMA  184 (296)
T ss_pred             cc---------------------------------------------------------------ccccCcccCCccccC
Confidence            10                                                               001123468899999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-CCC---CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-TPE---FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-~~~---~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||.+.+..++.++|+|||||++|+|++|+.||...+.......+... .+.   ....+..+.+||.+||..||++||  
T Consensus       185 PE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp--  262 (296)
T cd06654         185 PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRG--  262 (296)
T ss_pred             HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCc--
Confidence            99999888899999999999999999999999887655443333322 211   224567899999999999999999  


Q ss_pred             CCChhhhhcCCCCCCC
Q 042539          333 LRGACEIKEHVFFKGV  348 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~  348 (412)
                        ++.+++.|+||...
T Consensus       263 --t~~eil~~~~~~~~  276 (296)
T cd06654         263 --SAKELLQHQFLKIA  276 (296)
T ss_pred             --CHHHHhhChhhhcc
Confidence              79999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=9.9e-44  Score=338.63  Aligned_cols=255  Identities=24%  Similarity=0.420  Sum_probs=208.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||.||+|++...+.    .||+|.++...   .......+.+|+.++++++|+||+++++++..++.
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~----~~a~k~~~~~~---~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   73 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGV----TMAMKEIRLEL---DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGA   73 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCc----EEEEEEeeccc---CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCe
Confidence            589999999999999999999876554    49999986532   22234567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           98 LAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +|+|||||.|++|..++.... ...+++..+..++.|++.||.|||+ .||+||||||+||+++.++.+||+|||++..+
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  153 (286)
T cd06622          74 VYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNL  153 (286)
T ss_pred             EEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccc
Confidence            999999999999987765431 2358999999999999999999997 59999999999999999999999999998654


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ..                                                                 .......|++.|+
T Consensus       154 ~~-----------------------------------------------------------------~~~~~~~~~~~y~  168 (286)
T cd06622         154 VA-----------------------------------------------------------------SLAKTNIGCQSYM  168 (286)
T ss_pred             cC-----------------------------------------------------------------CccccCCCccCcc
Confidence            21                                                                 0112335888999


Q ss_pred             cceeecCC------CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHH---HhcCC-C-CCCCCChHHHHHHHHhhhh
Q 042539          256 SPEVVRGD------GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN---VLMKT-P-EFVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       256 APE~l~~~------~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~---i~~~~-~-~~~~~~~~~~dli~~~L~~  324 (412)
                      |||++.+.      .++.++|+|||||++|+|++|..||........+..   +.... + .....+.++.+||.+||+.
T Consensus       169 aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  248 (286)
T cd06622         169 APERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNK  248 (286)
T ss_pred             CcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHccc
Confidence            99998654      347899999999999999999999987655444333   33222 1 2234678999999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCCCCC
Q 042539          325 DPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      +|.+||    ++++++.||||...
T Consensus       249 ~p~~Rp----~~~~l~~~~~~~~~  268 (286)
T cd06622         249 IPNRRP----TYAQLLEHPWLVKY  268 (286)
T ss_pred             CcccCC----CHHHHhcChhhhhc
Confidence            999999    69999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-43  Score=329.81  Aligned_cols=252  Identities=27%  Similarity=0.408  Sum_probs=210.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++.+.||.|+||.||+|.+..++.    .+|+|++.....    .....+.+|+.++++++||||+++++++.++.
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   73 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGE----LVAIKVIKLEPG----DDFEIIQQEISMLKECRHPNIVAYFGSYLRRD   73 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCC----EEEEEEEEcCch----hhHHHHHHHHHHHHhCCCCChhceEEEEEeCC
Confidence            4789999999999999999999876543    499999975532    23466778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|++|||+.|++|..++... ...+++.++..++.|++.||.|||++||+|+||||+||+++.+|.+||+|||++..+.
T Consensus        74 ~~~l~~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~  152 (262)
T cd06613          74 KLWIVMEYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLT  152 (262)
T ss_pred             EEEEEEeCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhh
Confidence            999999999999998876654 2459999999999999999999999999999999999999999999999999987542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........|+..|+|
T Consensus       153 ~~---------------------------------------------------------------~~~~~~~~~~~~y~~  169 (262)
T cd06613         153 AT---------------------------------------------------------------IAKRKSFIGTPYWMA  169 (262)
T ss_pred             hh---------------------------------------------------------------hhccccccCCccccC
Confidence            11                                                               011224568889999


Q ss_pred             ceeecCC---CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CC----CCCCChHHHHHHHHhhhhCCC
Q 042539          257 PEVVRGD---GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PE----FVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       257 PE~l~~~---~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~----~~~~~~~~~dli~~~L~~dP~  327 (412)
                      ||.+.+.   .++.++|+|||||++|+|++|.+||.+.+.......+....  +.    ....+.++.+||.+||..+|.
T Consensus       170 Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  249 (262)
T cd06613         170 PEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPK  249 (262)
T ss_pred             chhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChh
Confidence            9999877   78899999999999999999999998877665544443331  11    112356899999999999999


Q ss_pred             ccCCCCCChhhhhcCCC
Q 042539          328 KRLGYLRGACEIKEHVF  344 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~f  344 (412)
                      +||    ++.+++.|+|
T Consensus       250 ~Rp----t~~~il~~~~  262 (262)
T cd06613         250 KRP----TATKLLQHPF  262 (262)
T ss_pred             hCC----CHHHHhcCCC
Confidence            999    6999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=2e-43  Score=347.45  Aligned_cols=253  Identities=25%  Similarity=0.422  Sum_probs=204.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|++..++..    ||||++.+...  .......+.+|+.+++.++|+||++++++|...
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~----vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   87 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQN----VAIKKLSRPFQ--NVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQ   87 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCE----EEEEecCcccc--ChhHHHHHHHHHHHHHhcCCCCCcceeeeeccC
Confidence            468899999999999999999998875544    99999865432  223344566799999999999999999998644


Q ss_pred             ------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           96 ------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        96 ------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                            ..+|+|||||.+ +|...+..    .+++..+..++.|++.||+|||++||+||||||+||+++.+|.+||+||
T Consensus        88 ~~~~~~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Df  162 (353)
T cd07850          88 KSLEEFQDVYLVMELMDA-NLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDF  162 (353)
T ss_pred             CCccccCcEEEEEeccCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccC
Confidence                  357999999965 66555432    2899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++....                                                                ........
T Consensus       163 g~~~~~~~----------------------------------------------------------------~~~~~~~~  178 (353)
T cd07850         163 GLARTAGT----------------------------------------------------------------SFMMTPYV  178 (353)
T ss_pred             ccceeCCC----------------------------------------------------------------CCCCCCCc
Confidence            99865421                                                                01112346


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------CC-
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------PE-  306 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~~-  306 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+....+.+++...                      +. 
T Consensus       179 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (353)
T cd07850         179 VTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKY  258 (353)
T ss_pred             ccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCC
Confidence            8899999999999999999999999999999999999998877555444432100                      00 


Q ss_pred             ---------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          307 ---------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       307 ---------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                                           ....++.+++||.+||+.||++||    ++.+++.||||+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~eiL~~~~~~~  316 (353)
T cd07850         259 AGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRI----SVDDALQHPYINV  316 (353)
T ss_pred             CCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCc----CHHHHhcChhHhh
Confidence                                 001245689999999999999999    6999999999984

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-43  Score=337.60  Aligned_cols=249  Identities=16%  Similarity=0.206  Sum_probs=206.5

Q ss_pred             CCCccCceee--eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           14 SLDLDNLKAL--KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        14 ~~~~~~y~~~--~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .+..++++..  ..||+|++|.||++...      +..||||++++... ........+.+|+.+|++++|||||+++++
T Consensus        14 ~i~~~~i~~~~~~~i~~g~~~~v~~~~~~------~~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~   86 (283)
T PHA02988         14 CIESDDIDKYTSVLIKENDQNSIYKGIFN------NKEVIIRTFKKFHK-GHKVLIDITENEIKNLRRIDSNNILKIYGF   86 (283)
T ss_pred             ecCHHHcCCCCCeEEeeCCceEEEEEEEC------CEEEEEEecccccc-ccHHHHHHHHHHHHHHHhcCCCCEEEEeee
Confidence            4555666666  78999999999999873      23499999976543 223345667789999999999999999999


Q ss_pred             EEe----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEE
Q 042539           92 LET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        92 ~~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      +.+    ...+++|||||.||+|..++....  .+++..+..++.|++.||.|||+. +++||||||+|||++.+|.+||
T Consensus        87 ~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl  164 (283)
T PHA02988         87 IIDIVDDLPRLSLILEYCTRGYLREVLDKEK--DLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKI  164 (283)
T ss_pred             EEecccCCCceEEEEEeCCCCcHHHHHhhCC--CCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEE
Confidence            877    357899999999999998876543  588999999999999999999985 9999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.....                                                                  ..
T Consensus       165 ~dfg~~~~~~~~------------------------------------------------------------------~~  178 (283)
T PHA02988        165 ICHGLEKILSSP------------------------------------------------------------------PF  178 (283)
T ss_pred             cccchHhhhccc------------------------------------------------------------------cc
Confidence            999998754210                                                                  11


Q ss_pred             ccccCCCCccceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCCC-CCChHHHHHHHHh
Q 042539          247 SFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEFV-GQRTALTDLIQRL  321 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~~-~~~~~~~dli~~~  321 (412)
                      ..+||..|+|||++.+  ..++.++|||||||++|||++|..||.+.+..+.+..+....  +..+ ..++.+.+||.+|
T Consensus       179 ~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~c  258 (283)
T PHA02988        179 KNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEAC  258 (283)
T ss_pred             cccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHH
Confidence            2368899999999976  678999999999999999999999999988888777775433  2333 5678999999999


Q ss_pred             hhhCCCccCCCCCChhhhhc
Q 042539          322 LEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |+.||.+||    ++.++++
T Consensus       259 l~~dp~~Rp----s~~ell~  274 (283)
T PHA02988        259 TSHDSIKRP----NIKEILY  274 (283)
T ss_pred             hcCCcccCc----CHHHHHH
Confidence            999999999    5777774

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=1e-43  Score=352.47  Aligned_cols=262  Identities=21%  Similarity=0.299  Sum_probs=207.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ...+..++|++.++||+|+||+||+|.+... ...++..||+|+++....   ......+.+|+++++.+ +||||++++
T Consensus        29 ~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~Ei~il~~l~~HpnIv~l~  105 (375)
T cd05104          29 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHINIVNLL  105 (375)
T ss_pred             ccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC---cHHHHHHHHHHHHHHHhcCCcceeeee
Confidence            4466677999999999999999999976432 223455699999965432   22345677899999999 799999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhC---------------------------------------------------
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQN---------------------------------------------------  118 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~---------------------------------------------------  118 (412)
                      +++.+++..++|||||.||+|..++....                                                   
T Consensus       106 ~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  185 (375)
T cd05104         106 GACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADK  185 (375)
T ss_pred             eeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccc
Confidence            99999999999999999999988875422                                                   


Q ss_pred             ----------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539          119 ----------------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus       119 ----------------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                                            ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~  265 (375)
T cd05104         186 RRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIR  265 (375)
T ss_pred             ccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceecc
Confidence                                  1247788899999999999999999999999999999999999999999999997542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ....                                                             ........++..|+|
T Consensus       266 ~~~~-------------------------------------------------------------~~~~~~~~~~~~y~a  284 (375)
T cd05104         266 NDSN-------------------------------------------------------------YVVKGNARLPVKWMA  284 (375)
T ss_pred             Cccc-------------------------------------------------------------ccccCCCCCCcceeC
Confidence            1100                                                             001112345678999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--C-CCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--P-EFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~-~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||++.+..++.++|||||||++|||++ |..||.+......+.+.+...  . .....+.++.+||.+||..||++||  
T Consensus       285 PE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP--  362 (375)
T cd05104         285 PESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRP--  362 (375)
T ss_pred             hhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCc--
Confidence            999999999999999999999999997 999998865544444443322  1 1223468899999999999999999  


Q ss_pred             CCChhhhhc
Q 042539          333 LRGACEIKE  341 (412)
Q Consensus       333 ~~~~~e~l~  341 (412)
                        ++.++++
T Consensus       363 --s~~eil~  369 (375)
T cd05104         363 --TFKQIVQ  369 (375)
T ss_pred             --CHHHHHH
Confidence              5788775

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-44  Score=307.17  Aligned_cols=256  Identities=27%  Similarity=0.462  Sum_probs=212.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|.-.++||+|.||+||+++++.++..    ||+|.++.+.  ..+.+-...+|||-+|+.++|.|||+++++...++.
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~ei----valkrvrldd--ddegvpssalreicllkelkhknivrl~dvlhsdkk   75 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEI----VALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK   75 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccce----EEEEEEeccC--CCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCce
Confidence            5688889999999999999988876655    9999997664  234456678889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +-+|+|||. .+|..+...- ++-++.+.++.++.|++.||.|+|+++++||||||+|+||+.+|.+||+|||+|+-+.-
T Consensus        76 ltlvfe~cd-qdlkkyfdsl-ng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgi  153 (292)
T KOG0662|consen   76 LTLVFEFCD-QDLKKYFDSL-NGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGI  153 (292)
T ss_pred             eEEeHHHhh-HHHHHHHHhc-CCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCC
Confidence            999999994 4665554433 35699999999999999999999999999999999999999999999999999986621


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                    |+..                                                 .+.-+-|.+|.+|
T Consensus       154 --------------pvrc-------------------------------------------------ysaevvtlwyrpp  170 (292)
T KOG0662|consen  154 --------------PVRC-------------------------------------------------YSAEVVTLWYRPP  170 (292)
T ss_pred             --------------ceEe-------------------------------------------------eeceeeeeeccCc
Confidence                          1111                                                 1123568899999


Q ss_pred             eeecCCC-CCchhhHHHHHHHHHHHh-hCCCCCCCCCHHHHHHHHhcC--CC------------C------C--------
Q 042539          258 EVVRGDG-HEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVLMK--TP------------E------F--------  307 (412)
Q Consensus       258 E~l~~~~-~~~~~DiwSlGvil~ell-~g~~Pf~~~~~~~~~~~i~~~--~~------------~------~--------  307 (412)
                      .++.|.. |+...|+||.|||+.|+. .|++.|+|.+..+++.+|...  .+            .      +        
T Consensus       171 dvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsq  250 (292)
T KOG0662|consen  171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQ  250 (292)
T ss_pred             ceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHH
Confidence            9999865 799999999999999998 599999999998888887631  11            1      1        


Q ss_pred             --CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          308 --VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       308 --~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                        +.....-+||++++|..+|..|+    +++++++||||.+.
T Consensus       251 ivp~lns~grdllqkll~cnp~qri----saeaalqhpyf~d~  289 (292)
T KOG0662|consen  251 IVPKLNSTGRDLLQKLLKCNPAQRI----SAEAALQHPYFSDF  289 (292)
T ss_pred             HhhhhcchhHHHHHHHhccCccccc----CHHHHhcCcccccc
Confidence              11223568999999999999999    59999999999853

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.7e-43  Score=341.13  Aligned_cols=258  Identities=27%  Similarity=0.356  Sum_probs=208.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++++.||+|+||.||+|.++.++.    .||+|+++.....  ........+|+.++++++|+||+++++++...
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~----~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   78 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGE----IVALKKVRMDNER--DGIPISSLREITLLLNLRHPNIVELKEVVVGK   78 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCc----EEEEEEEEeccCC--CCCcchhhHHHHHHHhCCCCCCcceEEEEecC
Confidence            57899999999999999999999887554    4999998654321  12223345699999999999999999999765


Q ss_pred             --CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           96 --EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        96 --~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                        +.+|+||||+.+ +|..++... ...+++.++..++.||+.||.|||+.|++||||||+||+++.+|.+||+|||++.
T Consensus        79 ~~~~~~lv~e~~~~-~l~~~l~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~  156 (309)
T cd07845          79 HLDSIFLVMEYCEQ-DLASLLDNM-PTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLAR  156 (309)
T ss_pred             CCCeEEEEEecCCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceee
Confidence              578999999965 676665543 2458999999999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ......                                                               .......+++.
T Consensus       157 ~~~~~~---------------------------------------------------------------~~~~~~~~~~~  173 (309)
T cd07845         157 TYGLPA---------------------------------------------------------------KPMTPKVVTLW  173 (309)
T ss_pred             ecCCcc---------------------------------------------------------------CCCCccccccc
Confidence            542110                                                               01112245788


Q ss_pred             CccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-------------------C-------
Q 042539          254 YVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-------------------E-------  306 (412)
Q Consensus       254 Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-------------------~-------  306 (412)
                      |+|||++.+ ..++.++|||||||++|+|++|++||.+.+..+.+..+.....                   .       
T Consensus       174 y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (309)
T cd07845         174 YRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYN  253 (309)
T ss_pred             ccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCC
Confidence            999999876 4578999999999999999999999999887777665543110                   0       


Q ss_pred             -----CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          307 -----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       307 -----~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                           +...++.+.+||.+||+.||++||    ++++++.|+||++.
T Consensus       254 ~~~~~~~~~~~~~~~li~~ml~~dp~~R~----t~~~il~h~~f~~~  296 (309)
T cd07845         254 NLKHKFPWLSEAGLRLLNFLLMYDPKKRA----TAEEALESSYFKEK  296 (309)
T ss_pred             chHHhccccCHHHHHHHHHHhcCChhhCc----CHHHHhcChhhccC
Confidence                 112467889999999999999999    69999999999853

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.4e-43  Score=333.71  Aligned_cols=259  Identities=27%  Similarity=0.447  Sum_probs=209.9

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh--hhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +|+..+.||+|+||.||++.+..++.    .||+|++.+...  .........+.+|+++++.++|+||+++++++.+.+
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~----~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   76 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGT----LMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDS   76 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCc----EEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCC
Confidence            58899999999999999998876554    499999975432  122234677888999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEccccccchh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDLSRNL  175 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFGla~~~  175 (412)
                      .+++||||+.|++|..++....  .+++..+..++.|++.||.|||++|++|+||||+||+++.++ .+||+|||++..+
T Consensus        77 ~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~  154 (268)
T cd06630          77 HFNLFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARL  154 (268)
T ss_pred             eEEEEEeccCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccc
Confidence            9999999999999988876543  589999999999999999999999999999999999998876 5899999998765


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      .....                                                           ..........||..|+
T Consensus       155 ~~~~~-----------------------------------------------------------~~~~~~~~~~~~~~~~  175 (268)
T cd06630         155 AAKGT-----------------------------------------------------------GAGEFQGQLLGTIAFM  175 (268)
T ss_pred             ccccc-----------------------------------------------------------cCCcccccccccccee
Confidence            32100                                                           0011123456899999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHH---HHhc--CCCCC-CCCChHHHHHHHHhhhhCCCcc
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NVLM--KTPEF-VGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~---~i~~--~~~~~-~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |||.+.+..++.++|+|||||++|+|++|..||...+......   ++..  ..+.. ...++++.++|.+||..+|.+|
T Consensus       176 ~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  255 (268)
T cd06630         176 APEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDR  255 (268)
T ss_pred             CHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccC
Confidence            9999988888999999999999999999999997644322222   2211  12222 2456889999999999999999


Q ss_pred             CCCCCChhhhhcCCCCC
Q 042539          330 LGYLRGACEIKEHVFFK  346 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~  346 (412)
                      |    ++.++++||||+
T Consensus       256 ~----~~~~ll~~~~~~  268 (268)
T cd06630         256 P----PSRELLKHPVFR  268 (268)
T ss_pred             c----CHHHHhcCcccC
Confidence            9    699999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=1.1e-43  Score=337.82  Aligned_cols=253  Identities=31%  Similarity=0.461  Sum_probs=207.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||.||+|.++.++.    .||+|++.+....  ......+.+|+++++.++|+||+++++++.+++.
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~----~~~iK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   74 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQ----IVAIKKFLESEDD--KMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKR   74 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCC----EEEEEeHhhccCc--chhhHHHHHHHHHHHhcCCcchhhHHHhcccCCe
Confidence            579999999999999999999876443    4999998664322  2334556779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+||||+.+++|..+....  ..+++.++..++.|++.||.|||+.||+|+||+|+||+++.++.++|+|||++..+..
T Consensus        75 ~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07846          75 LYLVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  152 (286)
T ss_pred             EEEEEecCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccC
Confidence            99999999999887665433  3489999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........|+..|+||
T Consensus       153 ~---------------------------------------------------------------~~~~~~~~~~~~y~aP  169 (286)
T cd07846         153 P---------------------------------------------------------------GEVYTDYVATRWYRAP  169 (286)
T ss_pred             C---------------------------------------------------------------ccccCcccceeeccCc
Confidence            1                                                               0111234688999999


Q ss_pred             eeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------C---------
Q 042539          258 EVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------P---------  305 (412)
Q Consensus       258 E~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~---------  305 (412)
                      |++.+. .++.++|||||||++|+|++|++||.+.+..+....+....                      +         
T Consensus       170 E~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (286)
T cd07846         170 ELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLE  249 (286)
T ss_pred             HHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHH
Confidence            998764 46889999999999999999999998766544433332100                      0         


Q ss_pred             -CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 -EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 -~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                       ..+..+..+.+||.+||..+|++||    ++.++++|+||
T Consensus       250 ~~~~~~~~~~~~li~~~l~~~P~~Rp----~~~~il~~~~~  286 (286)
T cd07846         250 KRFPKLSGLVLDLAKQCLRIDPDDRP----SSSQLLHHEFF  286 (286)
T ss_pred             HhCCCcCHHHHHHHHHHhcCCcccch----hHHHHhcCCCC
Confidence             1234567899999999999999999    68999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-43  Score=335.23  Aligned_cols=254  Identities=26%  Similarity=0.376  Sum_probs=202.2

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++++.||+|+||.||++.++.++    ..||||.+.......   ....+.+|+++++.++|+||+++++++.++
T Consensus         3 ~~~~y~~~~~lg~g~~~~vy~~~~~~~~----~~~~iK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   75 (291)
T cd07844           3 KLETYKKLDKLGEGSYATVYKGRSKLTG----QLVALKEIRLEHEEG---APFTAIREASLLKDLKHANIVTLHDIIHTK   75 (291)
T ss_pred             CccceeEEEEEeecCCeEEEEEEEcCCC----cEEEEEEEecccccC---CchhHHHHHHHHhhCCCcceeeEEEEEecC
Confidence            5789999999999999999999987644    349999986543211   123355699999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +..|+||||+.+ +|..++.... ..+++..++.++.|++.||.|||++||+||||||+||+++.+|.+||+|||+++..
T Consensus        76 ~~~~lv~e~~~~-~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  153 (291)
T cd07844          76 KTLTLVFEYLDT-DLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAK  153 (291)
T ss_pred             CeEEEEEecCCC-CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECcccccccc
Confidence            999999999975 8877765433 36899999999999999999999999999999999999999999999999998643


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                               ........++..|+
T Consensus       154 ~~~---------------------------------------------------------------~~~~~~~~~~~~~~  170 (291)
T cd07844         154 SVP---------------------------------------------------------------SKTYSNEVVTLWYR  170 (291)
T ss_pred             CCC---------------------------------------------------------------CccccccccccccC
Confidence            100                                                               00011224678999


Q ss_pred             cceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcC---C--------------------------
Q 042539          256 SPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMK---T--------------------------  304 (412)
Q Consensus       256 APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~---~--------------------------  304 (412)
                      |||++.+ ..++.++|||||||++|+|++|+.||.+.. ..+.+..+...   .                          
T Consensus       171 aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (291)
T cd07844         171 PPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRP  250 (291)
T ss_pred             CcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChh
Confidence            9999876 457889999999999999999999997765 22322222110   0                          


Q ss_pred             --CCCCCCC--hHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          305 --PEFVGQR--TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       305 --~~~~~~~--~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                        ......+  .++.++|.+||+.||++||    ++.++++|+||
T Consensus       251 ~~~~~~~~~~~~~~~~li~~~L~~~p~~Rp----s~~e~l~~~~f  291 (291)
T cd07844         251 LINHAPRLDRIPHGEELALKFLQYEPKKRI----SAAEAMKHPYF  291 (291)
T ss_pred             HHHhCcCCCCchhHHHHHHHHhccCccccc----CHHHHhcCCCC
Confidence              0011233  7788999999999999999    69999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=2.2e-43  Score=338.89  Aligned_cols=254  Identities=28%  Similarity=0.397  Sum_probs=210.4

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||.||++.+..++.    .||+|.+......    ....+.+|+.+++.++|+||+++++++..++
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~----~vaiK~~~~~~~~----~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   89 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQ----EVAIKQMNLQQQP----KKELIINEILVMRENKNPNIVNYLDSYLVGD   89 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCC----EEEEEEEecCccc----hHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            3799999999999999999999876544    4999999654322    2345677999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+||||++|++|..++..   ..+++.++..++.|++.||.|||+.||+||||||+|||++.+|.++|+|||++....
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~  166 (297)
T cd06656          90 ELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  166 (297)
T ss_pred             EEEEeecccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEcc
Confidence            99999999999999887654   248999999999999999999999999999999999999999999999999986432


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........|++.|+|
T Consensus       167 ~~---------------------------------------------------------------~~~~~~~~~~~~y~a  183 (297)
T cd06656         167 PE---------------------------------------------------------------QSKRSTMVGTPYWMA  183 (297)
T ss_pred             CC---------------------------------------------------------------ccCcCcccCCccccC
Confidence            10                                                               011123468899999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc-CCCC---CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-KTPE---FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~-~~~~---~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||.+.+..++.++|+|||||++|+|++|..||.+.+.......+.. ..+.   ....+..+++||.+||..||.+||  
T Consensus       184 PE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  261 (297)
T cd06656         184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRG--  261 (297)
T ss_pred             HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCc--
Confidence            9999988889999999999999999999999987665433322222 1111   123567899999999999999999  


Q ss_pred             CCChhhhhcCCCCCCC
Q 042539          333 LRGACEIKEHVFFKGV  348 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~  348 (412)
                        +++++++||||...
T Consensus       262 --s~~~il~~~~~~~~  275 (297)
T cd06656         262 --SAKELLQHPFLKLA  275 (297)
T ss_pred             --CHHHHhcCchhccc
Confidence              69999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.8e-43  Score=341.86  Aligned_cols=250  Identities=25%  Similarity=0.364  Sum_probs=189.1

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--CCeEEE
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--DEFLAW  100 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--~~~~~l  100 (412)
                      ..+||+|+||+||+|+++...  ....||+|.+.....      ...+.+|+.+++.++||||+++++++..  +..+|+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~--~~~~~a~k~~~~~~~------~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~l   77 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGK--DEKEYALKQIEGTGI------SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWL   77 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCC--ccceEEEEEecCCCC------cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEE
Confidence            368999999999999875432  345599999865432      2235569999999999999999999854  567899


Q ss_pred             EeeccCCCCchhHHHhh-------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE----ccCCCEEEccc
Q 042539          101 AVPYCPGGDLNVLRYKQ-------NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI----RQSGHVTLTDF  169 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~-------~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl----~~~g~vkL~DF  169 (412)
                      ||||+.+ +|..++...       ....+++..++.++.||+.||.|||++||+||||||+|||+    +.+|.+||+||
T Consensus        78 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~Df  156 (317)
T cd07867          78 LFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADM  156 (317)
T ss_pred             EEeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeec
Confidence            9999965 555554321       12248899999999999999999999999999999999999    56689999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.+....                                                            .........+
T Consensus       157 G~a~~~~~~~------------------------------------------------------------~~~~~~~~~~  176 (317)
T cd07867         157 GFARLFNSPL------------------------------------------------------------KPLADLDPVV  176 (317)
T ss_pred             cceeccCCCc------------------------------------------------------------ccccccCcce
Confidence            9997542110                                                            0011123457


Q ss_pred             cCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHH---------HHHHHHhc--C------------CC
Q 042539          250 GTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRK---------ETFRNVLM--K------------TP  305 (412)
Q Consensus       250 gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~---------~~~~~i~~--~------------~~  305 (412)
                      ||+.|+|||++.+. .++.++|||||||++|||++|.+||......         ..+..+..  +            .+
T Consensus       177 ~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (317)
T cd07867         177 VTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMP  256 (317)
T ss_pred             ecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcc
Confidence            89999999999874 4789999999999999999999999754321         11111110  0            00


Q ss_pred             C-------------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 E-------------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 ~-------------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      .                         ....+..+.+||.+||+.||.+|+    +++|+++||||
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~----t~~e~l~hp~f  317 (317)
T cd07867         257 EYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRI----TSEQALQDPYF  317 (317)
T ss_pred             cchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCccccc----CHHHHhcCCCC
Confidence            0                         011245688999999999999999    79999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3.5e-43  Score=336.78  Aligned_cols=258  Identities=28%  Similarity=0.411  Sum_probs=210.4

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +|++++.||+|+||.||+|.+..++.    .||||.++..... ........+..|+++++.++|+||+++++++.+++.
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~----~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   76 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGR----IVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSN   76 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCc----EEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCE
Confidence            58999999999999999999876543    4999999766532 112344556679999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+ +++|..++.... ..+++..+..++.||+.||.|||++||+|+||||+||+++.+|.++|+|||+++....
T Consensus        77 ~~lv~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  154 (298)
T cd07841          77 INLVFEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGS  154 (298)
T ss_pred             EEEEEccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccC
Confidence            99999999 899988876543 3599999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                               .......+++.|+||
T Consensus       155 ~~---------------------------------------------------------------~~~~~~~~~~~y~aP  171 (298)
T cd07841         155 PN---------------------------------------------------------------RKMTHQVVTRWYRAP  171 (298)
T ss_pred             CC---------------------------------------------------------------ccccccccceeeeCH
Confidence            10                                                               111123467889999


Q ss_pred             eeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C---------------------------CC
Q 042539          258 EVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P---------------------------EF  307 (412)
Q Consensus       258 E~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~---------------------------~~  307 (412)
                      |.+.+ ..++.++|+|||||++|+|++|.++|.+.+..+.+.++....  +                           .+
T Consensus       172 E~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (298)
T cd07841         172 ELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIF  251 (298)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhc
Confidence            99865 456899999999999999999999998877665554443210  0                           01


Q ss_pred             CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       308 ~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      ...+..+.+||.+||..||.+|+    ++.+++.|+||++..
T Consensus       252 ~~~~~~~~~li~~~l~~~P~~R~----s~~e~l~~~~~~~~~  289 (298)
T cd07841         252 PAASDDALDLLQRLLTLNPNKRI----TARQALEHPYFSNDP  289 (298)
T ss_pred             ccccHHHHHHHHHHhcCCcccCc----CHHHHhhCccccCCC
Confidence            23457899999999999999999    699999999998643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=3.6e-43  Score=333.34  Aligned_cols=259  Identities=20%  Similarity=0.283  Sum_probs=213.5

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +..++|.+++.||+|+||.||+|.+.... ......||+|+++....   .+....+.+|+++++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   78 (280)
T cd05049           2 VQRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS---NDARKDFEREAELLTNFQHENIVKFYGVCT   78 (280)
T ss_pred             CChHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC---HHHHHHHHHHHHHHHhcCCCCchheeeEEe
Confidence            45788999999999999999999875432 22455699999865432   334567788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhC------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQN------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      .+...++||||+.|++|..++....            ...+++.++..++.|++.||.|||++|++||||||+||+++.+
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~  158 (280)
T cd05049          79 EGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYD  158 (280)
T ss_pred             cCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCC
Confidence            9999999999999999998876542            2347899999999999999999999999999999999999999


Q ss_pred             CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          162 GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       162 g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      +.+||+|||+++.......                                                             
T Consensus       159 ~~~kl~d~g~~~~~~~~~~-------------------------------------------------------------  177 (280)
T cd05049         159 LVVKIGDFGMSRDVYTTDY-------------------------------------------------------------  177 (280)
T ss_pred             CeEEECCcccceecccCcc-------------------------------------------------------------
Confidence            9999999999865421100                                                             


Q ss_pred             CCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHH
Q 042539          242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLI  318 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli  318 (412)
                      ........+++.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+......  ....+..+.++|
T Consensus       178 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  257 (280)
T cd05049         178 YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQRPRTCPSEVYDIM  257 (280)
T ss_pred             eecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHH
Confidence            001122346788999999999999999999999999999998 99999988877777766654322  234678999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhc
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+||..||.+||    ++.|+++
T Consensus       258 ~~~l~~~p~~Rp----~~~eil~  276 (280)
T cd05049         258 LGCWKRDPQQRI----NIKDIHE  276 (280)
T ss_pred             HHHcCCCcccCC----CHHHHHH
Confidence            999999999999    6788774

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.5e-44  Score=364.93  Aligned_cols=270  Identities=24%  Similarity=0.327  Sum_probs=198.7

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCC-----------CceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTAR-----------CPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF   84 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~-----------~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn   84 (412)
                      ..++|++++.||+|+||+||+|..+.......           ...+.|++.+. ..........+.+|+.+|+.++|+|
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKR-VKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHH-hhcchHHHHHHHHHHHHHHhCCCCC
Confidence            35789999999999999999987654322110           00111112111 1122234556788999999999999


Q ss_pred             cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           85 LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN---DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        85 Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~---~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      ||++++++.+.+..|+|++++.+ +|..++....   .......+++.++.||+.||+|||++|||||||||+|||++.+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~  303 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCD  303 (501)
T ss_pred             cCcEeEEEEECCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCC
Confidence            99999999999999999999954 5555544321   1223467788999999999999999999999999999999999


Q ss_pred             CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          162 GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       162 g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      |.+||+|||+++.+...                                                              .
T Consensus       304 ~~vkL~DFGla~~~~~~--------------------------------------------------------------~  321 (501)
T PHA03210        304 GKIVLGDFGTAMPFEKE--------------------------------------------------------------R  321 (501)
T ss_pred             CCEEEEeCCCceecCcc--------------------------------------------------------------c
Confidence            99999999999765211                                                              0


Q ss_pred             CCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCC-CCCCC--CHHHHHHHHhcCC----CC--------
Q 042539          242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTT-PFRGK--NRKETFRNVLMKT----PE--------  306 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~-Pf~~~--~~~~~~~~i~~~~----~~--------  306 (412)
                      .......+||+.|+|||++.+..++.++|||||||++|||++|.. ||.+.  +....+.+++...    ..        
T Consensus       322 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  401 (501)
T PHA03210        322 EAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKL  401 (501)
T ss_pred             ccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHH
Confidence            111234679999999999999999999999999999999999875 44332  2222222222100    00        


Q ss_pred             ---------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          307 ---------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       307 ---------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                                           ....+.++.++|.+||++||.+||    ++.|+++||||.+......
T Consensus       402 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rp----sa~elL~hp~f~~~~~~~~  465 (501)
T PHA03210        402 FDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRP----GAAELLALPLFSAEEEEEI  465 (501)
T ss_pred             HHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCc----CHHHHhhChhhhcCCchHH
Confidence                                 012345788899999999999999    7999999999998765533

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-43  Score=331.00  Aligned_cols=253  Identities=24%  Similarity=0.399  Sum_probs=207.5

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~   95 (412)
                      .++|++.+.||+|+||.||+|.++..+    +.|++|++.....     ....+.+|+.+++++ .|+||+++++++...
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~----~~~~~k~~~~~~~-----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   75 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTG----QLVAIKIMDIIED-----EEEEIKEEYNILRKYSNHPNIATFYGAFIKK   75 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCC----cEEEEEEEecCch-----hHHHHHHHHHHHHHhcCCCChheEEEEEEec
Confidence            489999999999999999999987644    3499999865432     234567799999999 699999999999764


Q ss_pred             C------eEEEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           96 E------FLAWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        96 ~------~~~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      .      .+|+||||+.+++|.+++....  ...+++..++.++.|++.||.|||++|++|+||+|+||+++.++.+||+
T Consensus        76 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~  155 (275)
T cd06608          76 NPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLV  155 (275)
T ss_pred             CCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEEC
Confidence            4      5899999999999988766533  4569999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||++.......                                                               .....
T Consensus       156 d~~~~~~~~~~~---------------------------------------------------------------~~~~~  172 (275)
T cd06608         156 DFGVSAQLDSTL---------------------------------------------------------------GRRNT  172 (275)
T ss_pred             CCccceecccch---------------------------------------------------------------hhhcC
Confidence            999986542110                                                               11123


Q ss_pred             cccCCCCccceeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC----CCCChHHHHHH
Q 042539          248 FVGTEEYVSPEVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALTDLI  318 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~----~~~~~~~~dli  318 (412)
                      ..|+..|+|||++..     ..++.++|||||||++|+|++|.+||..........++.......    ...+.++.+||
T Consensus       173 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  252 (275)
T cd06608         173 FIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFI  252 (275)
T ss_pred             ccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHH
Confidence            468999999999864     245788999999999999999999998766555555554433211    12567899999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ++||..||++||    ++.++++|||+
T Consensus       253 ~~~l~~dp~~Rp----t~~~ll~~~~~  275 (275)
T cd06608         253 SECLIKNYEQRP----FMEELLEHPFI  275 (275)
T ss_pred             HHHhhcChhhCc----CHHHHhcCCCC
Confidence            999999999999    69999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=5.4e-43  Score=328.96  Aligned_cols=253  Identities=18%  Similarity=0.274  Sum_probs=210.5

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++..++|+++++||+|+||.||+|.+...     ..||+|.+.....     ..+.+.+|+.+++.++|+||+++++++
T Consensus         1 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~-----~~v~iK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~   70 (261)
T cd05072           1 WEIPRESIKLVKKLGAGQFGEVWMGYYNNS-----TKVAVKTLKPGTM-----SVQAFLEEANLMKTLQHDKLVRLYAVV   70 (261)
T ss_pred             CcCchHHeEEeeecCCcCCceEEEEEecCC-----ceEEEEEccCCch-----hHHHHHHHHHHHHhCCCCCeeeEEEEE
Confidence            467889999999999999999999986532     2399999865432     234567799999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+.+..+++|||+.|++|..++.......++...+..++.|++.||+|||++|++||||||+||+++.++.+||+|||++
T Consensus        71 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~  150 (261)
T cd05072          71 TKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLA  150 (261)
T ss_pred             cCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccc
Confidence            99999999999999999998887665556889999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +......                                                              ........++.
T Consensus       151 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  168 (261)
T cd05072         151 RVIEDNE--------------------------------------------------------------YTAREGAKFPI  168 (261)
T ss_pred             eecCCCc--------------------------------------------------------------eeccCCCccce
Confidence            7542110                                                              00011234567


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||++.+..++.++|||||||++|+|++ |..||.+.........+....  +.....+.++.++|.+||..+|++|
T Consensus       169 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  248 (261)
T cd05072         169 KWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEER  248 (261)
T ss_pred             ecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            8999999988888999999999999999998 999999887777766665432  2334567899999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    +++++.+
T Consensus       249 p----~~~~i~~  256 (261)
T cd05072         249 P----TFDYLQS  256 (261)
T ss_pred             c----CHHHHHH
Confidence            9    5676653

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=5.6e-43  Score=327.23  Aligned_cols=251  Identities=26%  Similarity=0.413  Sum_probs=211.2

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      -++|.+.+.||+|+||.||++.++..+    ..||+|.+.....      ...+.+|+++++.++|+||+++++++.++.
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~----~~~~~k~~~~~~~------~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~   71 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETG----QVVAIKVVPVEED------LQEIIKEISILKQCDSPYIVKYYGSYFKNT   71 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCC----cEEEEEEeecHHH------HHHHHHHHHHHHhCCCCcEeeeeeeeecCC
Confidence            378999999999999999999987644    4499999865421      456777999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+++||+.|++|..++.... ..+++..++.++.|++.||.|||+.|++||||+|+||+++.++.+||+|||++....
T Consensus        72 ~~~l~~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~  150 (256)
T cd06612          72 DLWIVMEYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLT  150 (256)
T ss_pred             cEEEEEecCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcc
Confidence            9999999999999988876433 468999999999999999999999999999999999999999999999999987542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........|+..|+|
T Consensus       151 ~~---------------------------------------------------------------~~~~~~~~~~~~y~~  167 (256)
T cd06612         151 DT---------------------------------------------------------------MAKRNTVIGTPFWMA  167 (256)
T ss_pred             cC---------------------------------------------------------------ccccccccCCccccC
Confidence            11                                                               001223457889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||++.+..++.++|||||||++|+|++|+.||...+.......+......    ....+..+.++|.+||+.||.+||  
T Consensus       168 PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp--  245 (256)
T cd06612         168 PEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERP--  245 (256)
T ss_pred             HHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCc--
Confidence            99999988999999999999999999999999887655544443332211    123467899999999999999999  


Q ss_pred             CCChhhhhcCCCC
Q 042539          333 LRGACEIKEHVFF  345 (412)
Q Consensus       333 ~~~~~e~l~h~ff  345 (412)
                        ++.++++||||
T Consensus       246 --s~~~il~~~~~  256 (256)
T cd06612         246 --SAIQLLQHPFI  256 (256)
T ss_pred             --CHHHHhcCCCC
Confidence              69999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-44  Score=365.81  Aligned_cols=258  Identities=25%  Similarity=0.376  Sum_probs=204.1

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeE-
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSL-   92 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~-   92 (412)
                      +---+++|.+.|.+|||+.||+|++...+.    .||+|.+--.    .+...+.+.+||++|++|+ |+|||.+++.. 
T Consensus        34 Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~----~~AlKrm~~~----de~~L~~v~~EI~~MK~L~gh~nIV~yidss~  105 (738)
T KOG1989|consen   34 VGSHRVTVEKVLAEGGFAQVYLAQDVKGGK----KYALKRMYVN----DEEALNAVKREIDIMKLLSGHKNIVSYIDSSA  105 (738)
T ss_pred             ECCEEEEEEEEEccCCcEEEEEEEecCCCc----eeeeeeeecC----CHHHHHHHHHHHHHHHHhcCCCceeeEecccc
Confidence            334467899999999999999999987653    3999988432    3456777888999999998 99999999943 


Q ss_pred             Ee---C---CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccCCCE
Q 042539           93 ET---D---EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSGHV  164 (412)
Q Consensus        93 ~~---~---~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~g~v  164 (412)
                      ..   +   -.++|+||||.||.|-+++..+....|+|.++..|++++|+||.+||...  |||||||-|||||+.+|+.
T Consensus       106 ~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~  185 (738)
T KOG1989|consen  106 INRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNY  185 (738)
T ss_pred             ccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCE
Confidence            21   1   24789999999999988888766667999999999999999999999998  9999999999999999999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||||||.|........               ..........-                                      
T Consensus       186 KLCDFGSatt~~~~~~---------------~~~e~~~ve~e--------------------------------------  212 (738)
T KOG1989|consen  186 KLCDFGSATTKILSPT---------------SAQEVNYVEEE--------------------------------------  212 (738)
T ss_pred             EeCcccccccccCCCc---------------cHHHHHHHHHH--------------------------------------
Confidence            9999999865421110               00000000000                                      


Q ss_pred             CcccccCCCCccceee---cCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc---CCCCCCCCChHHHHHH
Q 042539          245 SNSFVGTEEYVSPEVV---RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM---KTPEFVGQRTALTDLI  318 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l---~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~---~~~~~~~~~~~~~dli  318 (412)
                       -....|+.|+|||.+   .+.+.+.|+|||||||+||-|++...||.+....    .|+.   ..|.++.+++.+++||
T Consensus       213 -I~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~l----aIlng~Y~~P~~p~ys~~l~~LI  287 (738)
T KOG1989|consen  213 -IEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKL----AILNGNYSFPPFPNYSDRLKDLI  287 (738)
T ss_pred             -HHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcce----eEEeccccCCCCccHHHHHHHHH
Confidence             012469999999986   5678899999999999999999999999875322    3444   3466667789999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhcC
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +.||+.||.+||    ++-+++.+
T Consensus       288 ~~mL~~nP~~RP----nI~Qv~~~  307 (738)
T KOG1989|consen  288 RTMLQPNPDERP----NIYQVLEE  307 (738)
T ss_pred             HHHhccCcccCC----CHHHHHHH
Confidence            999999999999    56666654

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=7.1e-43  Score=329.44  Aligned_cols=258  Identities=28%  Similarity=0.390  Sum_probs=208.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-AKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--   94 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--   94 (412)
                      .+|++.+.||+|+||.||+|.+..++.    .||+|++...... ........+.+|+.+++.++|+||+++++++.+  
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   77 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGR----ELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRA   77 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCc----EEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCC
Confidence            479999999999999999999877554    4999998654321 122344567789999999999999999999876  


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      +..++++|||+.|++|..++....  .+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.
T Consensus        78 ~~~~~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~  155 (266)
T cd06651          78 EKTLTIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (266)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccc
Confidence            367899999999999988776543  489999999999999999999999999999999999999999999999999875


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                            ..........|+..|
T Consensus       156 ~~~~~------------------------------------------------------------~~~~~~~~~~~~~~y  175 (266)
T cd06651         156 LQTIC------------------------------------------------------------MSGTGIRSVTGTPYW  175 (266)
T ss_pred             ccccc------------------------------------------------------------ccCCccccCCccccc
Confidence            42100                                                            000111234588999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCCC-CCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEFV-GQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~~-~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||++.+..++.++|+|||||++|+|++|+.||...........+....  +.++ ..++.+.++| +||..+|++|| 
T Consensus       176 ~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp-  253 (266)
T cd06651         176 MSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRP-  253 (266)
T ss_pred             cCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCc-
Confidence            99999998888999999999999999999999998876665555444322  2222 3467889999 57778999999 


Q ss_pred             CCCChhhhhcCCCCC
Q 042539          332 YLRGACEIKEHVFFK  346 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~  346 (412)
                         +++++++||||+
T Consensus       254 ---~~~eil~hp~~~  265 (266)
T cd06651         254 ---SAEELLRHPFAQ  265 (266)
T ss_pred             ---CHHHHhcCcccc
Confidence               699999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=8.9e-43  Score=328.21  Aligned_cols=254  Identities=21%  Similarity=0.295  Sum_probs=211.4

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++...+|.+.+.||+|+||.||+|.++..+..    ||+|++.++..     ....+.+|+++++.++|+||+++++++
T Consensus         1 ~~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~----~~~K~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~   71 (263)
T cd05052           1 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLLGVC   71 (263)
T ss_pred             CCCchHHeEEeeecCCcccceEEEEEEecCCce----EEEEEecCCch-----HHHHHHHHHHHHHhCCCCChhheEEEE
Confidence            357788999999999999999999998765544    99999865432     234567799999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ..++.++++|||+.+++|..++.......+++..+..++.|++.||+|||++|++||||||+||+++.++.+||+|||++
T Consensus        72 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~  151 (263)
T cd05052          72 TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS  151 (263)
T ss_pred             cCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccc
Confidence            99999999999999999998876655556899999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.......                                                              .......++.
T Consensus       152 ~~~~~~~~--------------------------------------------------------------~~~~~~~~~~  169 (263)
T cd05052         152 RLMTGDTY--------------------------------------------------------------TAHAGAKFPI  169 (263)
T ss_pred             ccccccee--------------------------------------------------------------eccCCCCCcc
Confidence            75421100                                                              0011123466


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||.+.+..++.++|||||||++|||++ |..||.+.+..+....+....  ......+..+.++|.+||..||++|
T Consensus       170 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  249 (263)
T cd05052         170 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDR  249 (263)
T ss_pred             ccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            8999999998889999999999999999998 999999988877776665432  2224567899999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    ++.++++
T Consensus       250 p----~~~~l~~  257 (263)
T cd05052         250 P----SFAEIHQ  257 (263)
T ss_pred             C----CHHHHHH
Confidence            9    5777654

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=4.9e-43  Score=335.31  Aligned_cols=259  Identities=27%  Similarity=0.400  Sum_probs=207.8

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++.+.||+|++|+||++.++.++.    .||+|.+......  ......+.+|++++++++|+||+++++++.+++
T Consensus         1 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~----~~~iK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   74 (294)
T PLN00009          1 MDQYEKVEKIGEGTYGVVYKARDRVTNE----TIALKKIRLEQED--EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK   74 (294)
T ss_pred             CCceEEEEEecCCCCEEEEEEEecCCCc----EEEEEehhhcccc--ccchHHHHHHHHHHHhccCCCEeeEEEEEecCC
Confidence            4789999999999999999999876544    4999998665321  223445667999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CCCEEEccccccchh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFDLSRNL  175 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g~vkL~DFGla~~~  175 (412)
                      ..|+||||+.+ +|..++.......+++..++.++.||+.||+|||++|++||||||+||+++. ++.+||+|||++...
T Consensus        75 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~  153 (294)
T PLN00009         75 RLYLVFEYLDL-DLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF  153 (294)
T ss_pred             eEEEEEecccc-cHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEccccccccc
Confidence            99999999964 6766655444444788999999999999999999999999999999999985 457999999998644


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                               ........|++.|+
T Consensus       154 ~~~---------------------------------------------------------------~~~~~~~~~~~~y~  170 (294)
T PLN00009        154 GIP---------------------------------------------------------------VRTFTHEVVTLWYR  170 (294)
T ss_pred             CCC---------------------------------------------------------------ccccccCceeeccc
Confidence            210                                                               00011235788999


Q ss_pred             cceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--C-------------------C--------
Q 042539          256 SPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--T-------------------P--------  305 (412)
Q Consensus       256 APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~-------------------~--------  305 (412)
                      |||++.+. .++.++|||||||++|+|++|.+||.+.+..+...++...  .                   +        
T Consensus       171 ~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (294)
T PLN00009        171 APEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLA  250 (294)
T ss_pred             CHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHH
Confidence            99998764 5788999999999999999999999887766555544321  0                   0        


Q ss_pred             -CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 -EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 -~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                       ..+..++.++++|.+||..||++||    ++.++++|+||.+++
T Consensus       251 ~~~~~~~~~~~~~i~~~l~~~P~~Rp----s~~~~l~~~~~~~~~  291 (294)
T PLN00009        251 TVVPTLEPAGVDLLSKMLRLDPSKRI----TARAALEHEYFKDLG  291 (294)
T ss_pred             HhCcCCChHHHHHHHHHccCChhhCc----CHHHHhcCchHhHHh
Confidence             0134567899999999999999999    699999999998654

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.1e-42  Score=327.85  Aligned_cols=258  Identities=27%  Similarity=0.390  Sum_probs=209.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .+|++.+.||+|+||+||++.+..++.    .||||.+...... ........+.+|+++++.+.|+||+++++++.+. 
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~----~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   77 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGR----ELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPM   77 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCc----EEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCC
Confidence            689999999999999999999876554    4999998643221 1223456778899999999999999999998764 


Q ss_pred             -CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           96 -EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        96 -~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                       ..++++|||+.|++|..++....  .+++..+..++.|++.||+|||++||+|+||||+||+++.++.++|+|||+++.
T Consensus        78 ~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~  155 (265)
T cd06652          78 ERTLSIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKR  155 (265)
T ss_pred             CceEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccc
Confidence             57899999999999988776543  488999999999999999999999999999999999999999999999999875


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                            ..........|+..|
T Consensus       156 ~~~~~------------------------------------------------------------~~~~~~~~~~~~~~y  175 (265)
T cd06652         156 LQTIC------------------------------------------------------------LSGTGMKSVTGTPYW  175 (265)
T ss_pred             ccccc------------------------------------------------------------ccccccccCCCCccc
Confidence            42100                                                            000112234688999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCC-CCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEF-VGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~-~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||++.+..++.++|+|||||++|+|++|+.||...+......++....  +.. ...+..+.++|++|| .+|.+|| 
T Consensus       176 ~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~p~~Rp-  253 (265)
T cd06652         176 MSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIF-VEAKLRP-  253 (265)
T ss_pred             cChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHh-cChhhCC-
Confidence            99999988888999999999999999999999998876665555544322  212 234678999999999 4999999 


Q ss_pred             CCCChhhhhcCCCCC
Q 042539          332 YLRGACEIKEHVFFK  346 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~  346 (412)
                         +++++++|+|+.
T Consensus       254 ---~~~~il~~~~~~  265 (265)
T cd06652         254 ---SADELLRHTFVH  265 (265)
T ss_pred             ---CHHHHhcCcccC
Confidence               699999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-45  Score=340.04  Aligned_cols=255  Identities=26%  Similarity=0.405  Sum_probs=210.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-C-C----ccce
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H-P----FLPK   87 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-h-p----nIv~   87 (412)
                      ....++|++++.||+|+||+|..|.++.++    ..||||+++.-     .......+-|+++|.++. + |    -+|+
T Consensus        85 D~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~----~~vAlKIik~V-----~kYreAa~iEi~vLqki~~~DP~g~~rcv~  155 (415)
T KOG0671|consen   85 DILTNRYEIVDLLGEGTFGKVVECWDRETK----EHVALKIIKNV-----DKYREAALIEIEVLQKINESDPNGKFRCVQ  155 (415)
T ss_pred             cccccceehhhhhcCCcccceEEEeecCCC----ceehHHHHHHH-----HHHhhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence            344689999999999999999999998864    44999998532     233444556999999995 2 3    3889


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-------
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-------  160 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-------  160 (412)
                      +.++|.-.++.|||+|.+ |.++.+++...+-..|+..+++.+.+|++.+++|||+.+++|-||||+|||+.+       
T Consensus       156 m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~  234 (415)
T KOG0671|consen  156 MRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTY  234 (415)
T ss_pred             eehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEe
Confidence            999999999999999999 768888888777778999999999999999999999999999999999999853       


Q ss_pred             -------------CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCcccccccccc
Q 042539          161 -------------SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSA  227 (412)
Q Consensus       161 -------------~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (412)
                                   +..+||+|||.|+..                                                    
T Consensus       235 ~~k~~~~~~r~~ks~~I~vIDFGsAtf~----------------------------------------------------  262 (415)
T KOG0671|consen  235 NPKKKVCFIRPLKSTAIKVIDFGSATFD----------------------------------------------------  262 (415)
T ss_pred             ccCCccceeccCCCcceEEEecCCccee----------------------------------------------------
Confidence                         234899999988642                                                    


Q ss_pred             CCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH---HHHHHhcCC
Q 042539          228 RVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE---TFRNVLMKT  304 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~---~~~~i~~~~  304 (412)
                                    .+...+++.|.+|+|||++.|.+++.++||||+||||+|+++|...|.+.+..+   +++.|+...
T Consensus       263 --------------~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~  328 (415)
T KOG0671|consen  263 --------------HEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPI  328 (415)
T ss_pred             --------------ccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCC
Confidence                          233367899999999999999999999999999999999999999999977555   555554322


Q ss_pred             CC------------------CCC--------------------------CChHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          305 PE------------------FVG--------------------------QRTALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       305 ~~------------------~~~--------------------------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      |.                  ++.                          ...++.|||++||.+||++|+    |+.|++
T Consensus       329 P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~Ri----Tl~EAL  404 (415)
T KOG0671|consen  329 PSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRI----TLREAL  404 (415)
T ss_pred             cHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccc----cHHHHh
Confidence            11                  000                          013588999999999999999    799999


Q ss_pred             cCCCCCCC
Q 042539          341 EHVFFKGV  348 (412)
Q Consensus       341 ~h~ff~~~  348 (412)
                      .||||+..
T Consensus       405 ~HpFF~~~  412 (415)
T KOG0671|consen  405 SHPFFARL  412 (415)
T ss_pred             cCHHhhcC
Confidence            99999853

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=6e-43  Score=341.65  Aligned_cols=257  Identities=24%  Similarity=0.383  Sum_probs=203.6

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--   95 (412)
                      ++|++++.||+|+||.||++.+..++.    .||+|++....   .......+.+|+.+++.++|+||+++++++...  
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~----~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   77 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKPTGV----KVAIKKISPFE---HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSF   77 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcCCCC----eEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCcCchhheeecccc
Confidence            689999999999999999999877554    49999986422   223445567799999999999999999987644  


Q ss_pred             ---CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           96 ---EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        96 ---~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                         ..+|+|+||+.+ +|..++..   ..+++..++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        78 ~~~~~~~lv~e~~~~-~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~  153 (336)
T cd07849          78 ESFNDVYIVQELMET-DLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLA  153 (336)
T ss_pred             cccceEEEEehhccc-CHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccce
Confidence               358999999964 66555432   35999999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +......                                                            .........+||+
T Consensus       154 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~~  173 (336)
T cd07849         154 RIADPEH------------------------------------------------------------DHTGFLTEYVATR  173 (336)
T ss_pred             eeccccc------------------------------------------------------------cccCCcCCcCcCC
Confidence            7542110                                                            0001122357899


Q ss_pred             CCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--C---------------------CC---
Q 042539          253 EYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--K---------------------TP---  305 (412)
Q Consensus       253 ~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~---------------------~~---  305 (412)
                      .|+|||.+.+ ..++.++|||||||++|+|++|++||.+.+.......+..  +                     .+   
T Consensus       174 ~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (336)
T cd07849         174 WYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKP  253 (336)
T ss_pred             CccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCC
Confidence            9999998765 4578999999999999999999999988765443322211  0                     00   


Q ss_pred             ------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 ------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 ------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                            ..+..+.++.+||.+||+.||++||    ++.++++||||+...
T Consensus       254 ~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp----t~~e~l~hp~~~~~~  299 (336)
T cd07849         254 KVPWNKLFPNADPKALDLLDKMLTFNPHKRI----TVEEALAHPYLEQYH  299 (336)
T ss_pred             cccHHHHhcccCcHHHHHHHHHcCCChhhCc----CHHHHhcCccccccC
Confidence                  0124567899999999999999999    699999999998653

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.4e-43  Score=334.14  Aligned_cols=255  Identities=25%  Similarity=0.423  Sum_probs=212.1

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|++++.||+|+||+||++.+..++.    .||+|++....   .......+.+|+++++.++|+||+++++++..
T Consensus         2 l~~~~~~~~~~ig~g~~g~v~~~~~~~~~~----~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   74 (284)
T cd06620           2 LRNEDLETISDLGAGNGGSVSKVKHIPTGT----VMAKKVVHIGA---KSSVRKQILRELQIMHECRSPYIVSFYGAFLN   74 (284)
T ss_pred             ccHHHHHHHHHcCCCCCeEEEEEEEcCCCc----EEEEEEEEecC---cchHHHHHHHHHHHHHHcCCCCcceEeeeEec
Confidence            567899999999999999999999876554    49999986542   23345677889999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .+.+|+||||+.|++|..++...  +.+++..+..++.|++.||.|||+ +|++||||||+||+++.++.++|+|||++.
T Consensus        75 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~  152 (284)
T cd06620          75 ENNICMCMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSG  152 (284)
T ss_pred             CCEEEEEEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCccc
Confidence            99999999999999998776553  358999999999999999999997 699999999999999999999999999886


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                                 .....+||..
T Consensus       153 ~~~~~-----------------------------------------------------------------~~~~~~~~~~  167 (284)
T cd06620         153 ELINS-----------------------------------------------------------------IADTFVGTST  167 (284)
T ss_pred             chhhh-----------------------------------------------------------------ccCccccCcc
Confidence            43110                                                                 1123578999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-----------HHHHHHhcCC-CCC--CCCChHHHHHHH
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-----------ETFRNVLMKT-PEF--VGQRTALTDLIQ  319 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-----------~~~~~i~~~~-~~~--~~~~~~~~dli~  319 (412)
                      |+|||++.+..++.++|+|||||++|+|++|..||...+..           +....+.... +.+  ...+..+.+||.
T Consensus       168 ~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  247 (284)
T cd06620         168 YMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVD  247 (284)
T ss_pred             cCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHH
Confidence            99999998888899999999999999999999999875542           2233333322 111  125678999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +||..||.+||    ++.|+++|+||..
T Consensus       248 ~~l~~dp~~Rp----t~~e~~~~~~~~~  271 (284)
T cd06620         248 ACLLKDPTERP----TPQQLCAMPPFIQ  271 (284)
T ss_pred             HHhcCCcccCc----CHHHHhcCccccc
Confidence            99999999999    6999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=7.9e-43  Score=332.23  Aligned_cols=255  Identities=27%  Similarity=0.424  Sum_probs=204.9

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~   93 (412)
                      -..++|++++.||+|+||+||+|.++.++.    .||+|++.....     ....+.+|+.+++.+ +|+||+++++++.
T Consensus        15 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~----~~~ik~~~~~~~-----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   85 (286)
T cd06638          15 DPSDTWEIIETIGKGTYGKVFKVLNKKNGS----KAAVKILDPIHD-----IDEEIEAEYNILKALSDHPNVVKFYGMYY   85 (286)
T ss_pred             CcccceeeeeeeccCCCcEEEEEEECCCCc----eeEEEeeccccc-----hHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence            356899999999999999999999877554    499998854321     123455699999999 6999999999873


Q ss_pred             -----eCCeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           94 -----TDEFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        94 -----~~~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                           .++.+|+||||++|++|..++..  .....+++..+..++.|++.||.|||+++|+||||||+||+++.++.+||
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl  165 (286)
T cd06638          86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKL  165 (286)
T ss_pred             ecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEE
Confidence                 44679999999999999877653  22345899999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.+...                                                               .....
T Consensus       166 ~dfg~~~~~~~~---------------------------------------------------------------~~~~~  182 (286)
T cd06638         166 VDFGVSAQLTST---------------------------------------------------------------RLRRN  182 (286)
T ss_pred             ccCCceeecccC---------------------------------------------------------------CCccc
Confidence            999998754210                                                               01112


Q ss_pred             ccccCCCCccceeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-CC---CCCChHHHHH
Q 042539          247 SFVGTEEYVSPEVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-EF---VGQRTALTDL  317 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~~---~~~~~~~~dl  317 (412)
                      ...|++.|+|||++..     ..++.++|||||||++|+|++|+.||..........++..... ..   ...+.++.+|
T Consensus       183 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  262 (286)
T cd06638         183 TSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDF  262 (286)
T ss_pred             cccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHH
Confidence            3468999999999853     4478899999999999999999999987765544443332221 11   1245789999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      |.+||+.||++||    ++.++++|+||
T Consensus       263 i~~~l~~~p~~Rp----s~~ell~~~~~  286 (286)
T cd06638         263 IRKCLTKDYEKRP----TVSDLLQHVFI  286 (286)
T ss_pred             HHHHccCCcccCC----CHHHHhhcccC
Confidence            9999999999999    69999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-44  Score=353.54  Aligned_cols=249  Identities=28%  Similarity=0.455  Sum_probs=209.8

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      -+||+|+||+||-++|+.++..    +|||-|.....    ...+-+..||.+.++|+|.|||++++.+..++++-|.||
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvr----IaIKEIpekds----r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFME  652 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVR----IAIKEIPEKDS----REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFME  652 (1226)
T ss_pred             EEeecCceeEEEeeccccceeE----EEeeecccccc----hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEee
Confidence            3799999999999999986655    99999865432    234456669999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCC--CHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CCCEEEccccccchhhchhh
Q 042539          104 YCPGGDLNVLRYKQNDRVF--SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l--~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g~vkL~DFGla~~~~~~~~  180 (412)
                      -++||+|+.++.. .-+++  +|..+.+|..||+.||+|||++.|||||||-+|+|++- +|.+||+|||-++++.    
T Consensus       653 qVPGGSLSsLLrs-kWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLA----  727 (1226)
T KOG4279|consen  653 QVPGGSLSSLLRS-KWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLA----  727 (1226)
T ss_pred             cCCCCcHHHHHHh-ccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhc----
Confidence            9999999988765 34566  89999999999999999999999999999999999975 5999999999998763    


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                                                                                 .-...+.+|.||..|||||++
T Consensus       728 -----------------------------------------------------------ginP~TETFTGTLQYMAPEvI  748 (1226)
T KOG4279|consen  728 -----------------------------------------------------------GINPCTETFTGTLQYMAPEVI  748 (1226)
T ss_pred             -----------------------------------------------------------cCCccccccccchhhhChHhh
Confidence                                                                       112345588999999999999


Q ss_pred             cCC--CCCchhhHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHhc-CCCCCC-CCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          261 RGD--GHEFAVDWWALGILTYEMLYGTTPFRGK--NRKETFRNVLM-KTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       261 ~~~--~~~~~~DiwSlGvil~ell~g~~Pf~~~--~~~~~~~~i~~-~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ...  +|+.++|||||||++.||.||++||-..  ....+|+-.+. ..|+.+ ..+.+++.||.+|+.+||.+|+    
T Consensus       749 DqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~----  824 (1226)
T KOG4279|consen  749 DQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRP----  824 (1226)
T ss_pred             ccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCc----
Confidence            754  6899999999999999999999999653  33445544433 334444 4578899999999999999999    


Q ss_pred             ChhhhhcCCCCCCC
Q 042539          335 GACEIKEHVFFKGV  348 (412)
Q Consensus       335 ~~~e~l~h~ff~~~  348 (412)
                      .|.++|..||++.-
T Consensus       825 sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  825 SAKDLLQDPFLQHN  838 (1226)
T ss_pred             cHHHhccCcccccC
Confidence            59999999999754

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.5e-42  Score=331.48  Aligned_cols=254  Identities=27%  Similarity=0.414  Sum_probs=206.3

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~   95 (412)
                      .++|.+.+.||+|+||.||+|.++.++.    .+|+|++.....     ....+.+|+.+++.+ +|+||+++++++...
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~----~~aik~~~~~~~-----~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~   91 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGS----LAAVKILDPISD-----VDEEIEAEYNILQSLPNHPNVVKFYGMFYKA   91 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCC----EEEEEEeccccc-----HHHHHHHHHHHHHHhcCCCCeEEEEEEEEec
Confidence            5789999999999999999999876544    499999865321     223455689999999 799999999998754


Q ss_pred             -----CeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           96 -----EFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        96 -----~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                           ...|+||||+.|++|..++..  .....+++..++.++.|++.||.|||+.||+||||||+||+++.++.+||+|
T Consensus        92 ~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~d  171 (291)
T cd06639          92 DKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVD  171 (291)
T ss_pred             cccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEee
Confidence                 368999999999999887653  2234589999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||++.......                                                               ......
T Consensus       172 fg~~~~~~~~~---------------------------------------------------------------~~~~~~  188 (291)
T cd06639         172 FGVSAQLTSTR---------------------------------------------------------------LRRNTS  188 (291)
T ss_pred             cccchhccccc---------------------------------------------------------------ccccCc
Confidence            99987542110                                                               011234


Q ss_pred             ccCCCCccceeecCC-----CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHH
Q 042539          249 VGTEEYVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQ  319 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~-----~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~  319 (412)
                      .|+..|+|||++...     .++.++|||||||++|+|++|++||...+.......+....+.    ....+..+.+||.
T Consensus       189 ~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  268 (291)
T cd06639         189 VGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFIS  268 (291)
T ss_pred             cCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHH
Confidence            688999999998643     2578999999999999999999999887766655555433221    1234578999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      +||..||++||    ++.++++||||+
T Consensus       269 ~~l~~~p~~Rp----s~~~il~~~~~~  291 (291)
T cd06639         269 QCLIKDFEARP----SVTHLLEHPFIK  291 (291)
T ss_pred             HHhhcChhhCc----CHHHHhcCcccC
Confidence            99999999999    699999999984

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=4.6e-43  Score=335.36  Aligned_cols=255  Identities=25%  Similarity=0.401  Sum_probs=207.5

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++.+.||.|+||.||+|.++.++.    .||+|.++.....  ......+.+|+.++++++||||+++++++...
T Consensus         3 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~   76 (293)
T cd07843           3 SVDEYEKLNRIEEGTYGVVYRARDKKTGE----IVALKKLKMEKEK--EGFPITSLREINILLKLQHPNIVTVKEVVVGS   76 (293)
T ss_pred             chhhhhhhhhhcCCCCeEEEEEEECCCCc----EEEEEEEeecccc--ccchhhHHHHHHHHHhcCCCCEEEEEEEEEec
Confidence            35789999999999999999999876544    4999999765432  22334556799999999999999999999877


Q ss_pred             --CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           96 --EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        96 --~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                        ..+|+||||+.+ +|..++.... ..+++.+++.++.|++.||+|||++||+|+||||+|||++.+|.+||+|||+++
T Consensus        77 ~~~~~~lv~e~~~~-~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~  154 (293)
T cd07843          77 NLDKIYMVMEYVEH-DLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAR  154 (293)
T ss_pred             CCCcEEEEehhcCc-CHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCcee
Confidence              899999999975 7877665433 358999999999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ......                                                               .......+++.
T Consensus       155 ~~~~~~---------------------------------------------------------------~~~~~~~~~~~  171 (293)
T cd07843         155 EYGSPL---------------------------------------------------------------KPYTQLVVTLW  171 (293)
T ss_pred             eccCCc---------------------------------------------------------------ccccccccccc
Confidence            542110                                                               11122357889


Q ss_pred             CccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------------
Q 042539          254 YVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------------  304 (412)
Q Consensus       254 Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------------  304 (412)
                      |+|||.+.+.. ++.++|+|||||++|+|++|.+||.+.+..+.+.++....                            
T Consensus       172 ~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (293)
T cd07843         172 YRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYN  251 (293)
T ss_pred             ccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccch
Confidence            99999987654 5889999999999999999999999877666554443110                            


Q ss_pred             ---CCCCC--CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          305 ---PEFVG--QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       305 ---~~~~~--~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                         ..++.  .++.+.++|++||+.||++||    ++.|+++|+||
T Consensus       252 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~----t~~ell~~~~f  293 (293)
T cd07843         252 QLRKKFPALSLSDNGFDLLNRLLTYDPAKRI----SAEDALKHPYF  293 (293)
T ss_pred             hhhccccccCCChHHHHHHHHHhccCccccC----CHHHHhcCCCC
Confidence               11222  377899999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=3e-43  Score=337.25  Aligned_cols=253  Identities=23%  Similarity=0.394  Sum_probs=211.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|.....||+|+||.||++.+..++.    .||||.+....    ......+.+|+.+++.++|+||+++++.+..++.
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~----~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~   93 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGK----QVAVKKMDLRK----QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDE   93 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCC----EEEEEEEecch----HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCe
Confidence            556667889999999999998876544    49999986533    2334557789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+||||+.|++|..++..   ..+++.++..++.||+.||.|||++||+||||||+||+++.++.++|+|||++.....
T Consensus        94 ~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~  170 (292)
T cd06658          94 LWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSK  170 (292)
T ss_pred             EEEEEeCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhccc
Confidence            9999999999999877643   3489999999999999999999999999999999999999999999999999864421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........|+..|+||
T Consensus       171 ~---------------------------------------------------------------~~~~~~~~~~~~y~aP  187 (292)
T cd06658         171 E---------------------------------------------------------------VPKRKSLVGTPYWMAP  187 (292)
T ss_pred             c---------------------------------------------------------------cccCceeecCccccCH
Confidence            0                                                               0111245689999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |.+.+..++.++|+|||||++|||++|..||.+.+....+..+....+.    ....+..+.++|.+||..||.+||   
T Consensus       188 E~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp---  264 (292)
T cd06658         188 EVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRA---  264 (292)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCc---
Confidence            9998888999999999999999999999999987776655554432221    123567899999999999999999   


Q ss_pred             CChhhhhcCCCCCCC
Q 042539          334 RGACEIKEHVFFKGV  348 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~  348 (412)
                       +++++++|+||...
T Consensus       265 -t~~~il~~~~~~~~  278 (292)
T cd06658         265 -TAQELLQHPFLKLA  278 (292)
T ss_pred             -CHHHHhhChhhhcc
Confidence             69999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=7.5e-43  Score=330.11  Aligned_cols=246  Identities=28%  Similarity=0.447  Sum_probs=199.2

Q ss_pred             ccCceeeeee--eccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEE
Q 042539           17 LDNLKALKIL--GKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLE   93 (412)
Q Consensus        17 ~~~y~~~~~L--G~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~   93 (412)
                      .++|.+.+.+  |+|+||.||++.++.++..    +|+|++.+......         |+.+...+ +|+||++++++|.
T Consensus        13 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~----~~~k~~~~~~~~~~---------e~~~~~~~~~h~~iv~~~~~~~   79 (267)
T PHA03390         13 LKNCEIVKKLKLIDGKFGKVSVLKHKPTQKL----FVQKIIKAKNFNAI---------EPMVHQLMKDNPNFIKLYYSVT   79 (267)
T ss_pred             HHhhccccceeecCCCceEEEEEEEcCCCcE----EEEEEEehhhcchh---------hHHHHHHhhcCCCEEEEEEEEe
Confidence            3567777776  9999999999998875544    99999976543211         22222223 6999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEcccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDLS  172 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFGla  172 (412)
                      .++.+|+||||+.|++|..++....  .+++.+++.++.|++.||.|||+.|++||||||+||+++.++ .++|+|||++
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~  157 (267)
T PHA03390         80 TLKGHVLIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLC  157 (267)
T ss_pred             cCCeeEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccc
Confidence            9999999999999999988876543  599999999999999999999999999999999999999998 9999999988


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....                                                                   .....|+.
T Consensus       158 ~~~~~-------------------------------------------------------------------~~~~~~~~  170 (267)
T PHA03390        158 KIIGT-------------------------------------------------------------------PSCYDGTL  170 (267)
T ss_pred             eecCC-------------------------------------------------------------------CccCCCCC
Confidence            64311                                                                   01235788


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHH----HHHHhcCC-CCCCCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET----FRNVLMKT-PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~----~~~i~~~~-~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|+|||++.+..++.++|||||||++|+|++|..||........    +....... ......+..+.+||.+||+.||.
T Consensus       171 ~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  250 (267)
T PHA03390        171 DYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNIN  250 (267)
T ss_pred             cccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChh
Confidence            99999999998899999999999999999999999986543321    22222222 22335789999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCC
Q 042539          328 KRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +|++   +++++++||||..
T Consensus       251 ~R~~---~~~~~l~h~~~~~  267 (267)
T PHA03390        251 YRLT---NYNEIIKHPFLKI  267 (267)
T ss_pred             hCCc---hHHHHhcCCcccC
Confidence            9994   4699999999973

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=2.2e-44  Score=328.55  Aligned_cols=266  Identities=26%  Similarity=0.388  Sum_probs=209.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-C
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-D   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-~   95 (412)
                      +..|++++.||+|+||.||+|..+.+.......||||.++.+.-  .......+.||+.+++.++||||+.|..+|.. +
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd--~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKD--GTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCC--CCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            56899999999999999999965555443344799999965532  22345667789999999999999999999987 7


Q ss_pred             CeEEEEeeccCCCCchhHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC----CCEEEcc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQN---DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS----GHVTLTD  168 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~---~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~----g~vkL~D  168 (412)
                      ..+++++||++. ||...++-..   ...++...++.++.||++|+.|||++-|+||||||.|||+..+    |.|||+|
T Consensus       101 ~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeec
Confidence            799999999976 5555554432   2358999999999999999999999999999999999999887    8999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+|+.+.+.              ..|.                                              ......
T Consensus       180 lGlaR~~~~p--------------lkpl----------------------------------------------~s~d~V  199 (438)
T KOG0666|consen  180 LGLARLFNNP--------------LKPL----------------------------------------------ASLDPV  199 (438)
T ss_pred             ccHHHHhhcc--------------cccc----------------------------------------------ccCCce
Confidence            9999987432              1111                                              112345


Q ss_pred             ccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCH---------HHHHHHHhc--CCCC----------
Q 042539          249 VGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNR---------KETFRNVLM--KTPE----------  306 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---------~~~~~~i~~--~~~~----------  306 (412)
                      +-|.+|+|||++.|. .|+.++||||+|||+.||++-.+.|.+...         .+++.+|+.  +.|.          
T Consensus       200 VVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~  279 (438)
T KOG0666|consen  200 VVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKM  279 (438)
T ss_pred             EEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhC
Confidence            789999999999996 479999999999999999999999977431         223344431  1111          


Q ss_pred             --C------------C------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          307 --F------------V------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       307 --~------------~------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                        +            .            .-++.+.+|+.+||++||.+|+    |++++++|+||..-.
T Consensus       280 Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRI----ta~qAleh~yF~~d~  344 (438)
T KOG0666|consen  280 PEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRI----TAEQALEHPYFTEDP  344 (438)
T ss_pred             cchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhc----cHHHHhcccccccCC
Confidence              1            0            1234588999999999999999    799999999998753

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=3.8e-43  Score=343.42  Aligned_cols=263  Identities=22%  Similarity=0.306  Sum_probs=208.2

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ++++..++|++++.||+|+||.||+|.+..++ ..+++.||+|+++....   ......+.+|+.++.++ +|+||++++
T Consensus         1 ~~~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~E~~~~~~l~~h~niv~~~   77 (337)
T cd05054           1 KWEFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT---ASEYKALMTELKILIHIGHHLNVVNLL   77 (337)
T ss_pred             CcccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC---HHHHHHHHHHHHHHHhhccCcchhhee
Confidence            35677889999999999999999999765543 23456799999864321   22345567799999999 799999999


Q ss_pred             eeEEe-CCeEEEEeeccCCCCchhHHHhhCC-------------------------------------------------
Q 042539           90 GSLET-DEFLAWAVPYCPGGDLNVLRYKQND-------------------------------------------------  119 (412)
Q Consensus        90 ~~~~~-~~~~~lv~e~~~gg~L~~~~~~~~~-------------------------------------------------  119 (412)
                      +++.. +..++++|||+.|++|..++.....                                                 
T Consensus        78 ~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (337)
T cd05054          78 GACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVE  157 (337)
T ss_pred             eeEecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcc
Confidence            98865 4578999999999999888754321                                                 


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCC
Q 042539          120 ----------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN  189 (412)
Q Consensus       120 ----------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~  189 (412)
                                ..++...+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.+.....         
T Consensus       158 ~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~---------  228 (337)
T cd05054         158 EDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD---------  228 (337)
T ss_pred             cchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcc---------
Confidence                      2578899999999999999999999999999999999999999999999999976521110         


Q ss_pred             CCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchh
Q 042539          190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAV  269 (412)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~  269 (412)
                                                                          .....+..++..|+|||++.+..++.++
T Consensus       229 ----------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~  256 (337)
T cd05054         229 ----------------------------------------------------YVRKGDARLPLKWMAPESIFDKVYTTQS  256 (337)
T ss_pred             ----------------------------------------------------hhhccCCCCCccccCcHHhcCCCCCccc
Confidence                                                                0112234567789999999999999999


Q ss_pred             hHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC---CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          270 DWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       270 DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      |||||||++|||++ |..||.+....+.+...+...   ......++++.+++.+||+.+|++||    +++++++|
T Consensus       257 Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RP----s~~ell~~  329 (337)
T cd05054         257 DVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRP----TFSELVEI  329 (337)
T ss_pred             cHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCc----CHHHHHHH
Confidence            99999999999997 999998755444443333221   11224568899999999999999999    68888864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=8.2e-43  Score=333.59  Aligned_cols=255  Identities=25%  Similarity=0.398  Sum_probs=204.1

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~   96 (412)
                      ++|++.+.||+|+||.||+|.+..++.    .||+|+++....  .......+.+|+.+++.+. |+||+++++++...+
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~----~v~lK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~   74 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGK----LVALKKTRLEMD--EEGIPPTALREISLLQMLSESIYIVRLLDVEHVEE   74 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCc----EEEEEeehhhcc--ccCCchHHHHHHHHHHHccCCCCccceeeeEeecC
Confidence            579999999999999999999876544    499999865432  1123345667999999996 699999999998766


Q ss_pred             e-----EEEEeeccCCCCchhHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CCCEEEc
Q 042539           97 F-----LAWAVPYCPGGDLNVLRYKQN---DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLT  167 (412)
Q Consensus        97 ~-----~~lv~e~~~gg~L~~~~~~~~---~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g~vkL~  167 (412)
                      .     .|+||||+.+ +|..++....   ...+++..++.++.||+.||.|||++||+||||||+||+++. ++.+||+
T Consensus        75 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~  153 (295)
T cd07837          75 KNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIA  153 (295)
T ss_pred             CCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEe
Confidence            5     8999999986 6766665432   235899999999999999999999999999999999999999 8999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++.+...                                                               ......
T Consensus       154 dfg~~~~~~~~---------------------------------------------------------------~~~~~~  170 (295)
T cd07837         154 DLGLGRAFSIP---------------------------------------------------------------VKSYTH  170 (295)
T ss_pred             ecccceecCCC---------------------------------------------------------------ccccCC
Confidence            99998754210                                                               001112


Q ss_pred             cccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--------------------C-
Q 042539          248 FVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--------------------P-  305 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--------------------~-  305 (412)
                      ..+++.|+|||++.+ ..++.++|+|||||++|+|++|.+||.+.+..+....+....                    + 
T Consensus       171 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (295)
T cd07837         171 EIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQ  250 (295)
T ss_pred             cccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCc
Confidence            256889999998876 456899999999999999999999999877665554433210                    0 


Q ss_pred             --------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          306 --------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       306 --------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                              ..+..+.++.+||.+||..||.+||    ++.+++.||||+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~----~~~eil~~~~~~  295 (295)
T cd07837         251 WKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRI----SAKAALTHPYFD  295 (295)
T ss_pred             ccchhHHHhccccCHHHHHHHHHHccCChhhcC----CHHHHhcCCCcC
Confidence                    0134678899999999999999999    699999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=7.8e-43  Score=331.53  Aligned_cols=257  Identities=23%  Similarity=0.383  Sum_probs=203.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHH-HhhcCCCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV-LSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~i-l~~l~hpnIv~l~~~~~~~~   96 (412)
                      ++|++++.||+|+||.||+|.++.++..    ||+|++++.....   ....+..|+.+ ++.++|+||+++++++..+.
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~----vaiK~~~~~~~~~---~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~   73 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTI----MAVKRIRATVNSQ---EQKRLLMDLDISMRSVDCPYTVTFYGALFREG   73 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcE----EEEEEEecCCCcH---HHHHHHHHHHHHHHHcCCCCeeeeeEEEecCC
Confidence            5899999999999999999998875544    9999997653211   12334446554 66678999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEccccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .+|++|||+. |+|..++...  ....+++..+..++.|++.||.|||++ +++||||||+||+++.++.+||+|||+++
T Consensus        74 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~  152 (283)
T cd06617          74 DVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISG  152 (283)
T ss_pred             cEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence            9999999996 5666555432  234689999999999999999999997 99999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+...                                                                .......|+..
T Consensus       153 ~~~~~----------------------------------------------------------------~~~~~~~~~~~  168 (283)
T cd06617         153 YLVDS----------------------------------------------------------------VAKTIDAGCKP  168 (283)
T ss_pred             ccccc----------------------------------------------------------------cccccccCCcc
Confidence            54210                                                                01112357889


Q ss_pred             CccceeecC----CCCCchhhHHHHHHHHHHHhhCCCCCCCC-CHHHHHHHHhcCC-CCC--CCCChHHHHHHHHhhhhC
Q 042539          254 YVSPEVVRG----DGHEFAVDWWALGILTYEMLYGTTPFRGK-NRKETFRNVLMKT-PEF--VGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       254 Y~APE~l~~----~~~~~~~DiwSlGvil~ell~g~~Pf~~~-~~~~~~~~i~~~~-~~~--~~~~~~~~dli~~~L~~d  325 (412)
                      |+|||++.+    ..++.++|+|||||++|+|++|+.||... ...+.+..+.... +..  ...+.++.+||.+||..+
T Consensus       169 y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  248 (283)
T cd06617         169 YMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKN  248 (283)
T ss_pred             ccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCC
Confidence            999999865    44688999999999999999999999753 2233333443322 222  245789999999999999


Q ss_pred             CCccCCCCCChhhhhcCCCCCCCCc
Q 042539          326 PVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      |.+||    +++++++|+||....+
T Consensus       249 p~~Rp----~~~~il~~~~~~~~~~  269 (283)
T cd06617         249 YKERP----NYPELLQHPFFELHLS  269 (283)
T ss_pred             hhhCc----CHHHHhcCchhhhccc
Confidence            99999    6899999999987654

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=8.5e-43  Score=369.14  Aligned_cols=271  Identities=23%  Similarity=0.351  Sum_probs=207.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|+++++||+|+||.||+|.+..++.    .||||++.+... ......+++.+|+++++.++||||+++++++.+++
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~~tg~----~VAIK~I~~~l~-~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~   75 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDPVCSR----RVALKKIREDLS-ENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGD   75 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEECCCCc----EEEEEEECcccc-cCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCC
Confidence            4799999999999999999999877554    499999975432 23345667888999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhC---------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQN---------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~---------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      ..|+|||||+||+|..++....         ...++...+..++.||+.||+|||++||+||||||+|||++.+|.+||+
T Consensus        76 ~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLi  155 (932)
T PRK13184         76 PVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVIL  155 (932)
T ss_pred             EEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEE
Confidence            9999999999999988775421         1234566788899999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++.......... .                                 ..      ..     ..............
T Consensus       156 DFGLAk~i~~~~~~~~-~---------------------------------l~------~~-----~~~s~~s~~t~~g~  190 (932)
T PRK13184        156 DWGAAIFKKLEEEDLL-D---------------------------------ID------VD-----ERNICYSSMTIPGK  190 (932)
T ss_pred             ecCcceeccccccccc-c---------------------------------cc------cc-----cccccccccccCCC
Confidence            9999986521110000 0                                 00      00     00000011122345


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----CCCCCCChHHHHHHHHhhh
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----PEFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----~~~~~~~~~~~dli~~~L~  323 (412)
                      .+||+.|||||++.+..++.++|||||||++|||++|..||.+.+............    ......++.+.+++.+||.
T Consensus       191 ~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~  270 (932)
T PRK13184        191 IVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAMKALA  270 (932)
T ss_pred             CCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHHHHcc
Confidence            689999999999999999999999999999999999999998865444322221111    1223567889999999999


Q ss_pred             hCCCccCCCCCChhhhh
Q 042539          324 KDPVKRLGYLRGACEIK  340 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l  340 (412)
                      .||.+|++   ++++++
T Consensus       271 ~DP~kR~s---s~eeLl  284 (932)
T PRK13184        271 VDPAERYS---SVQELK  284 (932)
T ss_pred             CChhhCcC---HHHHHH
Confidence            99999996   445444

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-42  Score=329.08  Aligned_cols=261  Identities=18%  Similarity=0.241  Sum_probs=213.3

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +++..++|++++.||+|+||.||++.++... ......||+|.+.....   ......+.+|+.+++.++|+||++++++
T Consensus         1 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~   77 (277)
T cd05032           1 WELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENAS---MRERIEFLNEASVMKEFNCHHVVRLLGV   77 (277)
T ss_pred             CccchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccC---HHHHHHHHHHHHHHHhCCCCceeEEEEE
Confidence            3577899999999999999999999887544 22445699999865431   2234556779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhC--------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQN--------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~--------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                      +..+...|+||||+.+|+|..++....        ...+++..+..++.|++.||.|||++||+||||||+|||++.+|.
T Consensus        78 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~  157 (277)
T cd05032          78 VSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLT  157 (277)
T ss_pred             EcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCC
Confidence            999999999999999999988876532        123678899999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+++.+.....                                                             ..
T Consensus       158 ~kl~dfg~~~~~~~~~~-------------------------------------------------------------~~  176 (277)
T cd05032         158 VKIGDFGMTRDIYETDY-------------------------------------------------------------YR  176 (277)
T ss_pred             EEECCcccchhhccCcc-------------------------------------------------------------cc
Confidence            99999999875421100                                                             01


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-CC-CCCCChHHHHHHHH
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-PE-FVGQRTALTDLIQR  320 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~~-~~~~~~~~~dli~~  320 (412)
                      ......+|..|+|||.+.+..++.++|||||||++||+++ |..||.+.+..+....+.... +. ....+.++.++|.+
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  256 (277)
T cd05032         177 KGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPENCPDKLLELMRM  256 (277)
T ss_pred             cCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Confidence            1123356788999999988888999999999999999998 999999988777777666432 12 23457899999999


Q ss_pred             hhhhCCCccCCCCCChhhhhc
Q 042539          321 LLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ||+.+|++||    ++.++++
T Consensus       257 ~l~~~p~~Rp----t~~~l~~  273 (277)
T cd05032         257 CWQYNPKMRP----TFLEIVS  273 (277)
T ss_pred             HcCCChhhCC----CHHHHHH
Confidence            9999999999    6788775

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=5.5e-43  Score=332.96  Aligned_cols=260  Identities=18%  Similarity=0.304  Sum_probs=213.3

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ++.+.+|+++++||+|+||+||++.+..+. ......||||+++...   .......+.+|+.++..++||||+++++++
T Consensus         1 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~   77 (283)
T cd05091           1 EINLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA---EGPLREEFKHEAMMRSRLQHPNIVCLLGVV   77 (283)
T ss_pred             CCCHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC---CHHHHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence            467889999999999999999999876532 2234569999997543   223455677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI  158 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl  158 (412)
                      .+...+++++||+.+++|..++....              ...+++..+..++.|++.||.|||++||+||||||+|||+
T Consensus        78 ~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~  157 (283)
T cd05091          78 TKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLV  157 (283)
T ss_pred             cCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEe
Confidence            99999999999999999988875321              2347888999999999999999999999999999999999


Q ss_pred             ccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          159 RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      +.++.+||+|||+++.......                                                          
T Consensus       158 ~~~~~~kl~Dfg~~~~~~~~~~----------------------------------------------------------  179 (283)
T cd05091         158 FDKLNVKISDLGLFREVYAADY----------------------------------------------------------  179 (283)
T ss_pred             cCCCceEecccccccccccchh----------------------------------------------------------
Confidence            9999999999999875421100                                                          


Q ss_pred             cCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHH
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALT  315 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~  315 (412)
                         ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+.+..+....+......  ....+..+.
T Consensus       180 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  256 (283)
T cd05091         180 ---YKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDDCPAWVY  256 (283)
T ss_pred             ---eeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHH
Confidence               011123346789999999988889999999999999999998 99999998888877777655422  245678899


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +||.+||+.+|.+||    ++.+++.
T Consensus       257 ~li~~cl~~~p~~RP----~~~~i~~  278 (283)
T cd05091         257 TLMLECWNEFPSRRP----RFKDIHS  278 (283)
T ss_pred             HHHHHHhCCCcccCC----CHHHHHH
Confidence            999999999999999    5787775

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=6.9e-43  Score=336.36  Aligned_cols=257  Identities=22%  Similarity=0.348  Sum_probs=208.2

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~   91 (412)
                      +.+++++|++.+.||+|+||.||+|.++.++.  ...+|+|.++...   .......+.+|+.++.++ +|+||++++++
T Consensus         2 ~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~--~~~~~ik~~~~~~---~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~   76 (303)
T cd05088           2 PVLEWNDIKFQDVIGEGNFGQVLKARIKKDGL--RMDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIINLLGA   76 (303)
T ss_pred             CccchhhceeeeeecCCCCceEEEEEEccCCc--eeeEEEEEecccC---CHHHHHHHHHHHHHHHHhcCCCCcceEEEE
Confidence            45788999999999999999999999866432  2336787775322   223455677799999999 79999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceE
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENIL  157 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiL  157 (412)
                      +.+++.+|+||||+.|++|..++....              ...+++..++.++.|++.||+|||++||+||||||+|||
T Consensus        77 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nil  156 (303)
T cd05088          77 CEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL  156 (303)
T ss_pred             ECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEE
Confidence            999999999999999999988876432              135889999999999999999999999999999999999


Q ss_pred             EccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccc
Q 042539          158 IRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQ  237 (412)
Q Consensus       158 l~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.++.+||+|||+++.....                                                           
T Consensus       157 i~~~~~~kl~dfg~~~~~~~~-----------------------------------------------------------  177 (303)
T cd05088         157 VGENYVAKIADFGLSRGQEVY-----------------------------------------------------------  177 (303)
T ss_pred             ecCCCcEEeCccccCcccchh-----------------------------------------------------------
Confidence            999999999999988532100                                                           


Q ss_pred             ccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-C-CCCCCChHH
Q 042539          238 SFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-P-EFVGQRTAL  314 (412)
Q Consensus       238 ~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~-~~~~~~~~~  314 (412)
                           .......++..|+|||++.+..++.++|||||||++|+|++ |.+||.+.+..+....+.... . .....+.++
T Consensus       178 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (303)
T cd05088         178 -----VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEV  252 (303)
T ss_pred             -----hhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcCCCCCCCCHHH
Confidence                 00011234667999999988888999999999999999998 999999887777666554332 1 122457889


Q ss_pred             HHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          315 TDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       315 ~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      .+||.+||..+|.+||    ++++++++
T Consensus       253 ~~li~~~l~~~p~~Rp----~~~~il~~  276 (303)
T cd05088         253 YDLMRQCWREKPYERP----SFAQILVS  276 (303)
T ss_pred             HHHHHHHcCCChhhCc----CHHHHHHH
Confidence            9999999999999999    57888764

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=7.9e-43  Score=331.22  Aligned_cols=255  Identities=27%  Similarity=0.406  Sum_probs=213.1

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ..|+.++.||.|+||.||+|.++.++.    .||+|++.....   ......+.+|+.+++++.|+||+++++++.++..
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~----~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   76 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQ----VVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTK   76 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCE----EEEEEEEecccc---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCE
Confidence            468899999999999999999876544    499999875432   2334667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+||||+.|++|.+++..   +.+++.++..++.|++.||+|||+.|++|+||+|+||+++.++.++|+|||++..+..
T Consensus        77 ~~lv~e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06640          77 LWIIMEYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD  153 (277)
T ss_pred             EEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccC
Confidence            9999999999999887653   3489999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........++..|+||
T Consensus       154 ~---------------------------------------------------------------~~~~~~~~~~~~y~ap  170 (277)
T cd06640         154 T---------------------------------------------------------------QIKRNTFVGTPFWMAP  170 (277)
T ss_pred             C---------------------------------------------------------------ccccccccCcccccCH
Confidence            1                                                               0112234688899999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-C-CCCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-F-VGQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-~-~~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      |++.+...+.++|+|||||++|+|++|.+||.+.+.......+....+. . ...+..+.++|.+||..+|.+||    +
T Consensus       171 E~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----~  246 (277)
T cd06640         171 EVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRP----T  246 (277)
T ss_pred             hHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCc----C
Confidence            9998888899999999999999999999999987766555444332221 1 23467899999999999999999    6


Q ss_pred             hhhhhcCCCCCCCC
Q 042539          336 ACEIKEHVFFKGVR  349 (412)
Q Consensus       336 ~~e~l~h~ff~~~~  349 (412)
                      +.++++|+||....
T Consensus       247 ~~~il~~~~~~~~~  260 (277)
T cd06640         247 AKELLKHKFIVKNA  260 (277)
T ss_pred             HHHHHhChHhhhcc
Confidence            99999999997654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1e-42  Score=332.68  Aligned_cols=253  Identities=28%  Similarity=0.388  Sum_probs=199.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||.||+|.++.++..    ||+|++.....   ......+.+|+.+++.++|+||+++++++.+++
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~----~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   76 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQL----VALKVISMKTE---EGVPFTAIREASLLKGLKHANIVLLHDIIHTKE   76 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcE----EEEEEecccCc---CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCC
Confidence            37899999999999999999998775544    99999965432   122334567999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ..|+||||+. ++|...+... ...+++..++.++.|++.||.|||++||+|+||||+|||++.+|.+||+|||+++...
T Consensus        77 ~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  154 (291)
T cd07870          77 TLTFVFEYMH-TDLAQYMIQH-PGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKS  154 (291)
T ss_pred             eEEEEEeccc-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccC
Confidence            9999999996 5565554432 2457889999999999999999999999999999999999999999999999986431


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........+++.|+|
T Consensus       155 ~~---------------------------------------------------------------~~~~~~~~~~~~y~a  171 (291)
T cd07870         155 IP---------------------------------------------------------------SQTYSSEVVTLWYRP  171 (291)
T ss_pred             CC---------------------------------------------------------------CCCCCCccccccccC
Confidence            10                                                               011123357889999


Q ss_pred             ceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhc--------------CCCC--------------
Q 042539          257 PEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLM--------------KTPE--------------  306 (412)
Q Consensus       257 PE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~--------------~~~~--------------  306 (412)
                      ||++.+. .++.++|||||||++|+|++|..||.+.+.. +.+..+..              ..+.              
T Consensus       172 PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (291)
T cd07870         172 PDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQL  251 (291)
T ss_pred             CceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcch
Confidence            9998764 4788999999999999999999999875532 22222210              0000              


Q ss_pred             -----CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 -----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 -----~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                           ....+..+.++|.+||..||++||    ++.+++.||||
T Consensus       252 ~~~~~~~~~~~~~~~ll~~~l~~dp~~R~----t~~~~l~h~~~  291 (291)
T cd07870         252 RVVWKRLSRPPKAEDLASQMLMMFPKDRI----SAQDALLHPYF  291 (291)
T ss_pred             hhhccccCCChHHHHHHHHHhCcCcccCc----CHHHHhcCCCC
Confidence                 011246789999999999999999    69999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=1.4e-42  Score=324.81  Aligned_cols=254  Identities=25%  Similarity=0.451  Sum_probs=214.3

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|.+.+.||+|+||.||++.++..+..    ||+|.+.......  .....+.+|+++++.++|+||+++++.+..+...
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~----~~ik~~~~~~~~~--~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~   74 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEH----CVIKEIDLTKMPV--KEKEASKKEVILLAKMKHPNIVTFFASFQENGRL   74 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCce----EEEEEeeHhhccc--hhhHHHHHHHHHHHhCCCCChhhhhheeccCCeE
Confidence            589999999999999999999876554    9999997654322  2344567799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC-EEEccccccchhhc
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH-VTLTDFDLSRNLVK  177 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~-vkL~DFGla~~~~~  177 (412)
                      |+|+||+.|++|..++.......+++..+..++.|++.||.|||+++++|+||||+||+++.++. +||+|||.+.....
T Consensus        75 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~  154 (257)
T cd08225          75 FIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLND  154 (257)
T ss_pred             EEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccC
Confidence            99999999999988877655556899999999999999999999999999999999999998865 69999998865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........|++.|+||
T Consensus       155 ~---------------------------------------------------------------~~~~~~~~~~~~~~ap  171 (257)
T cd08225         155 S---------------------------------------------------------------MELAYTCVGTPYYLSP  171 (257)
T ss_pred             C---------------------------------------------------------------cccccccCCCccccCH
Confidence            1                                                               0111234588999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      |++.+..++.++|+|||||++|+|++|..||...+..+....+.....  ..+..+.++.++|.+||..+|++||    +
T Consensus       172 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp----t  247 (257)
T cd08225         172 EICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRP----S  247 (257)
T ss_pred             HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHhccChhhCc----C
Confidence            999888889999999999999999999999998777766666554332  2334678999999999999999999    6


Q ss_pred             hhhhhcCCCC
Q 042539          336 ACEIKEHVFF  345 (412)
Q Consensus       336 ~~e~l~h~ff  345 (412)
                      +.+++.||||
T Consensus       248 ~~~ll~~~~~  257 (257)
T cd08225         248 ITSILKRPFL  257 (257)
T ss_pred             HHHHhhCCCC
Confidence            9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.5e-42  Score=329.08  Aligned_cols=261  Identities=17%  Similarity=0.242  Sum_probs=210.0

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +.+..++|++.+.||+|+||.||++.++... ......||+|++.....   ......+.+|+.+++.++|+||++++++
T Consensus         1 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~~~~iv~~~~~   77 (277)
T cd05062           1 WEVAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAAS---MRERIEFLNEASVMKEFNCHHVVRLLGV   77 (277)
T ss_pred             CcccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEE
Confidence            3566789999999999999999999876432 12345699999865321   1234456789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCC--------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQND--------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~--------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                      +..+...++||||+.+|+|..++.....        ..++...+..++.|++.||.|||+.|++||||||+||+++.++.
T Consensus        78 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~  157 (277)
T cd05062          78 VSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFT  157 (277)
T ss_pred             EcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCC
Confidence            9999999999999999999988765321        23567888999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+++.+......                                                             .
T Consensus       158 ~~l~dfg~~~~~~~~~~~-------------------------------------------------------------~  176 (277)
T cd05062         158 VKIGDFGMTRDIYETDYY-------------------------------------------------------------R  176 (277)
T ss_pred             EEECCCCCccccCCccee-------------------------------------------------------------e
Confidence            999999998754211000                                                             0


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC-C-CCCCChHHHHHHHH
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP-E-FVGQRTALTDLIQR  320 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~-~~~~~~~~~dli~~  320 (412)
                      ......+++.|+|||++.+..++.++|||||||++|||++ |..||.+.+..+....+..... . ....++.+.++|.+
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  256 (277)
T cd05062         177 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRM  256 (277)
T ss_pred             cCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHH
Confidence            0112245788999999998889999999999999999998 7999999887777766655432 2 23456889999999


Q ss_pred             hhhhCCCccCCCCCChhhhhc
Q 042539          321 LLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ||+.||++||    ++.++++
T Consensus       257 ~l~~~p~~Rp----s~~e~l~  273 (277)
T cd05062         257 CWQYNPKMRP----SFLEIIS  273 (277)
T ss_pred             HcCCChhhCc----CHHHHHH
Confidence            9999999999    5788775

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.9e-42  Score=324.52  Aligned_cols=250  Identities=22%  Similarity=0.300  Sum_probs=206.5

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|++++.||+|+||.||++.++..     ..+|+|.+.+....     ...+.+|+.+++.++||||+++++++..
T Consensus         1 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~-----~~~a~K~~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~~   70 (256)
T cd05114           1 INPSELTFMKELGSGQFGVVHLGKWRAQ-----IKVAIKAINEGAMS-----EEDFIEEAKVMMKLSHPKLVQLYGVCTQ   70 (256)
T ss_pred             CCHHHcEEeeEecCCcCceEEEEEeccC-----ceEEEEecccCCcc-----HHHHHHHHHHHHHCCCCCceeEEEEEcc
Confidence            3567899999999999999999987642     23899998654321     2346679999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.+|+||||+.||+|..++.... +.+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.
T Consensus        71 ~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~  149 (256)
T cd05114          71 QKPLYIVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRY  149 (256)
T ss_pred             CCCEEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccc
Confidence            999999999999999988776433 3589999999999999999999999999999999999999999999999998875


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ......                                                              .......++..|
T Consensus       150 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~y  167 (256)
T cd05114         150 VLDDEY--------------------------------------------------------------TSSSGAKFPVKW  167 (256)
T ss_pred             cCCCce--------------------------------------------------------------eccCCCCCchhh
Confidence            421100                                                              001122356689


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||++.+..++.++|+|||||++|+|++ |+.||...+..+....+......  ....+..+.++|.+||..||.+|| 
T Consensus       168 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp-  246 (256)
T cd05114         168 SPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRP-  246 (256)
T ss_pred             CChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCc-
Confidence            99999998889999999999999999999 99999998888877777654322  223467899999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         +++++++
T Consensus       247 ---s~~~l~~  253 (256)
T cd05114         247 ---TFAELLR  253 (256)
T ss_pred             ---CHHHHHH
Confidence               5788764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=2.3e-42  Score=323.95  Aligned_cols=254  Identities=26%  Similarity=0.432  Sum_probs=212.4

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--CC
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--DE   96 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--~~   96 (412)
                      +|++++.||.|+||.||+|.+..++.    .||+|++......  ......+..|+++++.++|+||+++++++..  +.
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~----~~~~k~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGK----ILVWKEIDYGNMT--EKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQ   74 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCC----EEEEEEEecccCC--HHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCC
Confidence            58999999999999999998877544    4999999765442  2334567789999999999999999998764  45


Q ss_pred             eEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHH-----HcCceeeeCCCCceEEccCCCEEEccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLH-----NMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH-----~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      .+|++|||+.+++|..++...  ....+++..++.++.||+.||.|||     +.+++|+||||+||+++.++.+||+||
T Consensus        75 ~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~  154 (265)
T cd08217          75 TLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDF  154 (265)
T ss_pred             EEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecc
Confidence            789999999999998887543  2346899999999999999999999     999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |++......                                                               ........
T Consensus       155 g~~~~~~~~---------------------------------------------------------------~~~~~~~~  171 (265)
T cd08217         155 GLAKILGHD---------------------------------------------------------------SSFAKTYV  171 (265)
T ss_pred             cccccccCC---------------------------------------------------------------cccccccc
Confidence            998754211                                                               01122346


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-CC-CCCChHHHHHHHHhhhhCCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-EF-VGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~~-~~~~~~~~dli~~~L~~dP~  327 (412)
                      |++.|+|||.+.+..++.++|+|||||++|+|++|..||...+..+....+..... .. ...+.++.+++.+||..+|.
T Consensus       172 ~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~  251 (265)
T cd08217         172 GTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPD  251 (265)
T ss_pred             cCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcc
Confidence            89999999999988889999999999999999999999999886666666554432 22 24568999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCC
Q 042539          328 KRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff  345 (412)
                      +||    ++.++++|||+
T Consensus       252 ~Rp----~~~~il~~~~~  265 (265)
T cd08217         252 KRP----STEELLQLPLI  265 (265)
T ss_pred             cCC----CHHHHhhCCCC
Confidence            999    79999999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=4.1e-43  Score=334.72  Aligned_cols=260  Identities=26%  Similarity=0.385  Sum_probs=207.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      +.++|+.++.||+|+||.||++.+..++.    .||+|.+.+....   .....+.+|+.++.++. |+||+++++++..
T Consensus         2 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~----~~aiK~~~~~~~~---~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~   74 (288)
T cd06616           2 TAEDLKDLGEIGRGAFGTVNKMLHKPSGT----IMAVKRIRSTVDE---KEQKRLLMDLDVVMRSSDCPYIVKFYGALFR   74 (288)
T ss_pred             cHHHhHHHHHhCCCCceEEEEEEECCCCC----EEEEEEehhccCh---HHHHHHHHHHHHHHHhcCCCCEeeeeeEEec
Confidence            56789999999999999999999877544    4999998765422   34556778999999996 9999999999999


Q ss_pred             CCeEEEEeeccCCCCchhH---HHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEcccc
Q 042539           95 DEFLAWAVPYCPGGDLNVL---RYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~---~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +...+++|||+.+ ++..+   +.......+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus        75 ~~~~~~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg  153 (288)
T cd06616          75 EGDCWICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFG  153 (288)
T ss_pred             CCcEEEEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecc
Confidence            9999999999864 44332   2333345699999999999999999999975 99999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.+...                                                                .......|
T Consensus       154 ~~~~~~~~----------------------------------------------------------------~~~~~~~~  169 (288)
T cd06616         154 ISGQLVDS----------------------------------------------------------------IAKTRDAG  169 (288)
T ss_pred             hhHHhccC----------------------------------------------------------------CccccccC
Confidence            98754211                                                                01122358


Q ss_pred             CCCCccceeecCC---CCCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHhcCC-CCC-----CCCChHHHHHHHH
Q 042539          251 TEEYVSPEVVRGD---GHEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLMKT-PEF-----VGQRTALTDLIQR  320 (412)
Q Consensus       251 t~~Y~APE~l~~~---~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~~~~-~~~-----~~~~~~~~dli~~  320 (412)
                      |..|+|||++.+.   .++.++|||||||++|+|++|++||...+. .+...++.... +..     ...+.++.+||.+
T Consensus       170 ~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  249 (288)
T cd06616         170 CRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINL  249 (288)
T ss_pred             ccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHH
Confidence            8899999999876   578999999999999999999999976542 22333333222 111     1356889999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      ||+.||++||    +++++++||||+...|.
T Consensus       250 ~l~~~p~~Rp----t~~~i~~~~~~~~~~~~  276 (288)
T cd06616         250 CLIKDESKRP----KYKELLEHPFIKDYEER  276 (288)
T ss_pred             HccCChhhCc----CHHHHhcChhhhchhhc
Confidence            9999999999    69999999999876553

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=9.6e-43  Score=331.54  Aligned_cols=254  Identities=28%  Similarity=0.455  Sum_probs=208.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++.+.||+|+||.||+|.+..++    +.||+|+++....  .......+.+|+++++.++|+||+++++++.+++.
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~----~~v~vK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   74 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATG----EIVAIKKFKESED--DEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGR   74 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCC----cEEEEehhhhhcc--cccchhHHHHHHHHHHhcCCCCeeehhheEEECCE
Confidence            47999999999999999999987654    3499999865432  22345667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.++.+..+...  ...+++.++..++.||+.||.|||++|++||||+|+||+++.++.+||+|||++.....
T Consensus        75 ~~iv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~  152 (288)
T cd07833          75 LYLVFEYVERTLLELLEAS--PGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRA  152 (288)
T ss_pred             EEEEEecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCC
Confidence            9999999998877655443  23489999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                              .......+++..|+||
T Consensus       153 ~~--------------------------------------------------------------~~~~~~~~~~~~~~~P  170 (288)
T cd07833         153 RP--------------------------------------------------------------ASPLTDYVATRWYRAP  170 (288)
T ss_pred             Cc--------------------------------------------------------------cccccCcccccCCcCC
Confidence            10                                                              0112345688999999


Q ss_pred             eeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--------------CC-----------------
Q 042539          258 EVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--------------TP-----------------  305 (412)
Q Consensus       258 E~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--------------~~-----------------  305 (412)
                      |++.+. .++.++|+|||||++|+|++|++||.+.+..+....+...              ..                 
T Consensus       171 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T cd07833         171 ELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLE  250 (288)
T ss_pred             chhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHH
Confidence            999888 7899999999999999999999999887655433322110              00                 


Q ss_pred             -CCC-CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 -EFV-GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 -~~~-~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                       .++ ..+.++++||.+||..+|++||    +++++++|+||
T Consensus       251 ~~~~~~~~~~~~~li~~~l~~~p~~Rp----s~~~il~~~~f  288 (288)
T cd07833         251 RRYPGKVSSPALDFLKACLRMDPKERL----TCDELLQHPYF  288 (288)
T ss_pred             HhcCCccchHHHHHHHHHhccCchhcc----cHHHHhcCCCC
Confidence             011 1267899999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.3e-42  Score=336.38  Aligned_cols=259  Identities=20%  Similarity=0.247  Sum_probs=208.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+...+|++++.||+|+||+||+|.+...+......||+|+++...   .....+.+.+|+.+++.++|+||+++++++.
T Consensus         3 ~~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~   79 (316)
T cd05108           3 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMASVDNPHVCRLLGICL   79 (316)
T ss_pred             ccchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEc
Confidence            3567899999999999999999999876665555669999986432   2234556778999999999999999999987


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .. ..++++||+.+|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        80 ~~-~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~  157 (316)
T cd05108          80 TS-TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (316)
T ss_pred             CC-CceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccc
Confidence            65 5789999999999988876543 358899999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                             ........++..
T Consensus       158 ~~~~~~~-------------------------------------------------------------~~~~~~~~~~~~  176 (316)
T cd05108         158 LLGADEK-------------------------------------------------------------EYHAEGGKVPIK  176 (316)
T ss_pred             cccCCCc-------------------------------------------------------------ceeccCCcccee
Confidence            6521100                                                             000112234678


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcC--CCCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMK--TPEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||++.+..++.++|||||||++|||++ |..||.+....+....+...  .+.....+.++.++|.+||..||.+||
T Consensus       177 y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  256 (316)
T cd05108         177 WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRP  256 (316)
T ss_pred             ecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCc
Confidence            999999999999999999999999999997 99999987766544333222  123345678899999999999999999


Q ss_pred             CCCCChhhhhcC
Q 042539          331 GYLRGACEIKEH  342 (412)
Q Consensus       331 ~~~~~~~e~l~h  342 (412)
                          ++.+++.+
T Consensus       257 ----s~~~l~~~  264 (316)
T cd05108         257 ----KFRELIIE  264 (316)
T ss_pred             ----CHHHHHHH
Confidence                57888764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=3.9e-43  Score=342.70  Aligned_cols=262  Identities=22%  Similarity=0.367  Sum_probs=208.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe---
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET---   94 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~---   94 (412)
                      ++|++.+.||+|+||.||+|.++.++.    .||+|++.+...  .......+.+|+.+++.++|+||++++++|..   
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~----~valK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   78 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGK----KVAIKKIPHAFD--VPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGA   78 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCC----EEEEEEeccccc--cccchHHHHHHHHHHHhcCCCCccCHHHhccccCC
Confidence            789999999999999999999887554    499999975432  12334566779999999999999999998863   


Q ss_pred             -CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           95 -DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        95 -~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                       ...+|+||||+. ++|..++...  ..+++..++.++.||+.||.|||++||+||||||+||+++.+|.+||+|||+++
T Consensus        79 ~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~  155 (334)
T cd07855          79 DFKDVYVVMDLME-SDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMAR  155 (334)
T ss_pred             CCceEEEEEehhh-hhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccce
Confidence             357899999995 5777666543  349999999999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                           .........+|+..
T Consensus       156 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~~  176 (334)
T cd07855         156 GLSSSPT-----------------------------------------------------------EHKYFMTEYVATRW  176 (334)
T ss_pred             eecccCc-----------------------------------------------------------CCCccccccccccc
Confidence            5532100                                                           01111224578999


Q ss_pred             CccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc-----------------------CCC---C
Q 042539          254 YVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-----------------------KTP---E  306 (412)
Q Consensus       254 Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~-----------------------~~~---~  306 (412)
                      |+|||.+.+ ..++.++|||||||++|+|++|++||.+.+....+..+..                       ..+   .
T Consensus       177 y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (334)
T cd07855         177 YRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQP  256 (334)
T ss_pred             ccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCC
Confidence            999999866 4578999999999999999999999988765443322211                       000   0


Q ss_pred             ------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          307 ------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       307 ------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                            .+..+.++.++|.+||+.+|.+||    ++++++.||||.+..-.
T Consensus       257 ~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp----t~~~~l~~~~~~~~~~~  303 (334)
T cd07855         257 VPWSKIFPKASPEALDLLSQMLQFDPEERI----TVEQALQHPFLAQYHDP  303 (334)
T ss_pred             CCHHHHcccCCHHHHHHHHHHccCChhhCc----CHHHHHhChhhhhccCC
Confidence                  134578899999999999999999    69999999999865543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-42  Score=325.67  Aligned_cols=257  Identities=21%  Similarity=0.294  Sum_probs=211.9

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ++.++|++.+.||+|+||+||+|.++..+. ....||+|+++....   ......+.+|+.+++.++|+||+++++++..
T Consensus         1 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~-~~~~vaik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   76 (266)
T cd05033           1 IDPSYVTIEKVIGGGEFGEVCRGRLKLPGK-KEIDVAIKTLKAGSS---DKQRLDFLTEASIMGQFDHPNIIRLEGVVTK   76 (266)
T ss_pred             CChHHceeeeEecCCccceEEEEEEccCCC-CcceEEEEEcCCCCC---hHHHHHHHHHHHHHHhCCCCCcceEeEEEec
Confidence            356899999999999999999998865422 344599999865432   2344567789999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++..+++|||+.|++|..++.... +.+++..+..++.|++.||.|||++||+||||||+|||++.++.++|+|||+++.
T Consensus        77 ~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~  155 (266)
T cd05033          77 SRPVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRR  155 (266)
T ss_pred             CCceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhc
Confidence            999999999999999998876543 3689999999999999999999999999999999999999999999999999976


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ......                                                             ........++..|
T Consensus       156 ~~~~~~-------------------------------------------------------------~~~~~~~~~~~~y  174 (266)
T cd05033         156 LEDSEA-------------------------------------------------------------TYTTKGGKIPIRW  174 (266)
T ss_pred             cccccc-------------------------------------------------------------ceeccCCCCCccc
Confidence            521000                                                             0001122356789


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||.+.+..++.++|||||||++|+|++ |..||......+....+....  +.....+..+.+|+.+||+.+|++|| 
T Consensus       175 ~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-  253 (266)
T cd05033         175 TAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERP-  253 (266)
T ss_pred             cChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCc-
Confidence            99999998889999999999999999997 999998877777766665432  33345678999999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         ++.++++
T Consensus       254 ---~~~ei~~  260 (266)
T cd05033         254 ---TFSQIVS  260 (266)
T ss_pred             ---CHHHHHH
Confidence               5788775

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=2.5e-42  Score=329.72  Aligned_cols=258  Identities=21%  Similarity=0.300  Sum_probs=211.2

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++.++|.+.+.||+|+||+||++.+.... ...+..+|+|.+.+..    ......+.+|+.++++++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   77 (288)
T cd05093           2 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----DNARKDFHREAELLTNLQHEHIVKFYGVCV   77 (288)
T ss_pred             CchHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC----HHHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            56789999999999999999999864432 2234558999986542    234556778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhC-----------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQN-----------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~-----------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g  162 (412)
                      .++.+++||||+.+++|..++....           ...+++..+..++.|++.||+|||++|++||||||+|||++.++
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~  157 (288)
T cd05093          78 EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENL  157 (288)
T ss_pred             cCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCC
Confidence            9999999999999999988876432           12489999999999999999999999999999999999999999


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+++.......                                                             .
T Consensus       158 ~~kl~dfg~~~~~~~~~~-------------------------------------------------------------~  176 (288)
T cd05093         158 LVKIGDFGMSRDVYSTDY-------------------------------------------------------------Y  176 (288)
T ss_pred             cEEeccCCccccccCCce-------------------------------------------------------------e
Confidence            999999999875421100                                                             0


Q ss_pred             CCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC-C-CCCCChHHHHHHH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP-E-FVGQRTALTDLIQ  319 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~-~~~~~~~~~dli~  319 (412)
                      .......++..|+|||++.+..++.++|+|||||++|+|++ |.+||.+.+..+....+..... . ....+.++.+||.
T Consensus       177 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~  256 (288)
T cd05093         177 RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPKEVYDLML  256 (288)
T ss_pred             ecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHH
Confidence            01122346788999999998889999999999999999998 9999998887777777765442 2 2245789999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhc
Q 042539          320 RLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +||+.||.+||    ++.++++
T Consensus       257 ~~l~~~p~~Rp----t~~~v~~  274 (288)
T cd05093         257 GCWQREPHMRL----NIKEIHS  274 (288)
T ss_pred             HHccCChhhCC----CHHHHHH
Confidence            99999999999    5777653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=1.4e-42  Score=329.88  Aligned_cols=252  Identities=27%  Similarity=0.430  Sum_probs=205.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++++.||.|++|.||+|++..++.    .||||+++.....   .....+.+|+.++++++|+||+++++++.+.+..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----~~~iK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   73 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGE----IVALKEIHLDAEE---GTPSTAIREISLMKELKHENIVRLHDVIHTENKL   73 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCe----EEEEEEecccccc---cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcE
Confidence            68999999999999999999876544    4999999765321   2234556799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           99 AWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      ++||||+.| +|..++.... ...+++..+..++.|++.||.|||++|++||||||+||+++.+|.++|+|||+++....
T Consensus        74 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~  152 (284)
T cd07836          74 MLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGI  152 (284)
T ss_pred             EEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcC
Confidence            999999986 6766655433 24589999999999999999999999999999999999999999999999999864421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........+|..|++|
T Consensus       153 ~---------------------------------------------------------------~~~~~~~~~~~~y~~P  169 (284)
T cd07836         153 P---------------------------------------------------------------VNTFSNEVVTLWYRAP  169 (284)
T ss_pred             C---------------------------------------------------------------ccccccccccccccCh
Confidence            0                                                               0011223578899999


Q ss_pred             eeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--------------C----C------------
Q 042539          258 EVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--------------P----E------------  306 (412)
Q Consensus       258 E~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--------------~----~------------  306 (412)
                      |++.+. .++.++|+|||||++|+|++|..||.+.+..+....+....              +    .            
T Consensus       170 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (284)
T cd07836         170 DVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQL  249 (284)
T ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHH
Confidence            998764 46889999999999999999999999877666555443210              0    0            


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      .+..+..++++|.+||+.||.+|+    ++.++++||||
T Consensus       250 ~~~~~~~~~~~i~~~l~~~p~~R~----~~~~~l~~~~f  284 (284)
T cd07836         250 FPHADPLGIDLLHRLLQLNPELRI----SAHDALQHPWF  284 (284)
T ss_pred             hhhcCcHHHHHHHHHhcCCcccCC----CHHHHhcCCCC
Confidence            123467889999999999999999    69999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=1.5e-42  Score=329.26  Aligned_cols=248  Identities=27%  Similarity=0.402  Sum_probs=198.6

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeC--C
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETD--E   96 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~--~   96 (412)
                      |++++.||+|+||.||++.++.++.    .||+|++++.....   ......+|+.++.++. |+||+++++++.++  +
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~----~~aik~~~~~~~~~---~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   73 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGK----YYAIKCMKKHFKSL---EQVNNLREIQALRRLSPHPNILRLIEVLFDRKTG   73 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCc----EEEEEEehhccCCc---hhhhHHHHHHHHhhcCCCCCccceEEEEecCCCC
Confidence            7889999999999999999876554    49999987643211   1223346899999996 99999999999987  8


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+++||||+.| +|...+... ...+++..++.++.|++.||+|||+.|++||||||+||+++. |.+||+|||+++.+.
T Consensus        74 ~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~  150 (282)
T cd07831          74 RLALVFELMDM-NLYELIKGR-KRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIY  150 (282)
T ss_pred             cEEEEEecCCc-cHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccc
Confidence            89999999975 665555432 245899999999999999999999999999999999999999 999999999987542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                                .......++..|+|
T Consensus       151 ~~----------------------------------------------------------------~~~~~~~~~~~y~a  166 (282)
T cd07831         151 SK----------------------------------------------------------------PPYTEYISTRWYRA  166 (282)
T ss_pred             cC----------------------------------------------------------------CCcCCCCCCcccCC
Confidence            11                                                                11123457889999


Q ss_pred             ceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC------------------CC-----------
Q 042539          257 PEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT------------------PE-----------  306 (412)
Q Consensus       257 PE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~------------------~~-----------  306 (412)
                      ||++.+ ..++.++|||||||++|||++|.+||.+.+..+.+..+....                  ..           
T Consensus       167 PE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (282)
T cd07831         167 PECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRK  246 (282)
T ss_pred             hhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHH
Confidence            998755 446889999999999999999999999877655444332100                  00           


Q ss_pred             -CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 -FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 -~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                       ....+..+.+||.+||.+||++||    +++++++||||
T Consensus       247 ~~~~~~~~~~~li~~~l~~~P~~R~----~~~~~l~~~~~  282 (282)
T cd07831         247 LLPNASAEGLDLLKKLLAYDPDERI----TAKQALRHPYF  282 (282)
T ss_pred             HcccccHHHHHHHHHHhccCccccc----CHHHHhhCCCC
Confidence             123468899999999999999999    69999999997

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=8.8e-43  Score=340.69  Aligned_cols=268  Identities=22%  Similarity=0.357  Sum_probs=209.7

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--   95 (412)
                      ++|++++.||+|+||+||+|++..++.    .||||.+.+....  ......+.+|+.+++.++|+||+++++++...  
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~----~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~   78 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNE----KVAIKKIANAFDN--RIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHR   78 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCC----eEEEEEecccccc--cchhHHHHHHHHHHHhcCCCCccchHHheecccc
Confidence            579999999999999999999876544    4999998754321  22234566799999999999999999988654  


Q ss_pred             ---CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           96 ---EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        96 ---~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                         ..+|+||||+. ++|..++..  .+.+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++
T Consensus        79 ~~~~~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~  155 (337)
T cd07858          79 EAFNDVYIVYELMD-TDLHQIIRS--SQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLA  155 (337)
T ss_pred             cccCcEEEEEeCCC-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccc
Confidence               35899999995 677666543  345999999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.....                                                               ........||.
T Consensus       156 ~~~~~~---------------------------------------------------------------~~~~~~~~~~~  172 (337)
T cd07858         156 RTTSEK---------------------------------------------------------------GDFMTEYVVTR  172 (337)
T ss_pred             cccCCC---------------------------------------------------------------ccccccccccc
Confidence            654210                                                               01122446788


Q ss_pred             CCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc-----------------------CC----
Q 042539          253 EYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-----------------------KT----  304 (412)
Q Consensus       253 ~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~-----------------------~~----  304 (412)
                      .|+|||.+.+ ..++.++|+|||||++|+|++|++||.+.+.......+..                       ..    
T Consensus       173 ~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (337)
T cd07858         173 WYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTP  252 (337)
T ss_pred             CccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCccc
Confidence            9999998865 4578999999999999999999999988765433322210                       00    


Q ss_pred             -----CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCC
Q 042539          305 -----PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPF  361 (412)
Q Consensus       305 -----~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~  361 (412)
                           ...+..++++.+||.+||+.||++||    +++++++||||..+.-.........||
T Consensus       253 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp----s~~ell~h~~~~~~~~~~~~~~~~~~~  310 (337)
T cd07858         253 RQSFARLFPHANPLAIDLLEKMLVFDPSKRI----TVEEALAHPYLASLHDPSDEPVCQTPF  310 (337)
T ss_pred             ccCHHHHcccCCHHHHHHHHHHhcCChhhcc----CHHHHHcCcchhhhcCcccCccCCCcc
Confidence                 01235678899999999999999999    699999999998765443333333344

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.5e-42  Score=328.49  Aligned_cols=278  Identities=37%  Similarity=0.580  Sum_probs=221.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~   96 (412)
                      ++|++.+.||+|+||.||+|.+..++    +.||+|++.++.... ......+.+|+.+++++. |+||+++++++.+++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~----~~~~ik~~~~~~~~~-~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~   75 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETN----KEYAIKILDKRQLIK-EKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEE   75 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCC----CEEEEEEechHhccc-hHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCc
Confidence            58999999999999999999987644    449999997755432 233456777999999998 999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+++|||++.|++|..++....  .+++..+..++.|++.||.|||++|++|+||||+||+++.+|.++|+|||++....
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~  153 (280)
T cd05581          76 NLYFVLEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLD  153 (280)
T ss_pred             eEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccC
Confidence            9999999999999988876543  59999999999999999999999999999999999999999999999999997653


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ...........                                .+           ...............+.|+..|+|
T Consensus       154 ~~~~~~~~~~~--------------------------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  190 (280)
T cd05581         154 PNSSPESNKGD--------------------------------AT-----------NIDSQIEKNRRRFASFVGTAEYVS  190 (280)
T ss_pred             CccccccCCCC--------------------------------Cc-----------cccccccccccccccccCCccccC
Confidence            22110000000                                00           000001112233456778999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      ||++.+..++.++|+|||||++|++++|+.||...+....+..+......+ ...++.+.+||.+||+.||.+||+....
T Consensus       191 Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  270 (280)
T cd05581         191 PELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEG  270 (280)
T ss_pred             HHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccC
Confidence            999988888999999999999999999999999988777777766544333 3457899999999999999999942112


Q ss_pred             hhhhhcCCCC
Q 042539          336 ACEIKEHVFF  345 (412)
Q Consensus       336 ~~e~l~h~ff  345 (412)
                      .+++++||||
T Consensus       271 ~~~ll~~~~~  280 (280)
T cd05581         271 YDELKAHPFF  280 (280)
T ss_pred             HHHHhcCCCC
Confidence            2999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=2.9e-42  Score=331.97  Aligned_cols=263  Identities=21%  Similarity=0.315  Sum_probs=213.7

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCcccee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKL   88 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l   88 (412)
                      ..+++..++|.+.+.||+|+||.||++.+... .......||+|++++...   ......+.+|+.+++++ +|+||+++
T Consensus        28 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~  104 (302)
T cd05055          28 LKWEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH---SSEREALMSELKIMSHLGNHENIVNL  104 (302)
T ss_pred             ccccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC---hHHHHHHHHHHHHHHhccCCCCcceE
Confidence            35678889999999999999999999986432 222445699999865432   23345677899999999 79999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      ++++...+.+|+||||+.||+|..++.......+++.++..++.|++.||+|||++||+|+||||+|||++.++.+||+|
T Consensus       105 ~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~d  184 (302)
T cd05055         105 LGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICD  184 (302)
T ss_pred             EEEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECC
Confidence            99999999999999999999999887754444589999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++.+.....                                                             .......
T Consensus       185 fg~~~~~~~~~~-------------------------------------------------------------~~~~~~~  203 (302)
T cd05055         185 FGLARDIMNDSN-------------------------------------------------------------YVVKGNA  203 (302)
T ss_pred             CcccccccCCCc-------------------------------------------------------------eeecCCC
Confidence            999875421100                                                             0011223


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC---CCCCCChHHHHHHHHhhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP---EFVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~dli~~~L~~  324 (412)
                      .++..|+|||.+.+..++.++|||||||++|+|++ |..||.+....+.+.+......   .....+.++.+||.+||..
T Consensus       204 ~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  283 (302)
T cd05055         204 RLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDA  283 (302)
T ss_pred             CcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCC
Confidence            46788999999999889999999999999999998 9999988776655555443321   1234578999999999999


Q ss_pred             CCCccCCCCCChhhhhc
Q 042539          325 DPVKRLGYLRGACEIKE  341 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~  341 (412)
                      +|++||    ++.++++
T Consensus       284 ~p~~Rp----t~~ell~  296 (302)
T cd05055         284 DPLKRP----TFKQIVQ  296 (302)
T ss_pred             CchhCc----CHHHHHH
Confidence            999999    5788764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.4e-42  Score=346.39  Aligned_cols=262  Identities=22%  Similarity=0.315  Sum_probs=208.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~   89 (412)
                      +.++..++|++++.||+|+||.||+|.+...+. .+...||||+++...   .....+.+.+|+++++.+. |||||+++
T Consensus        31 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~---~~~~~~~~~~Ei~~l~~l~~HpnIv~l~  107 (400)
T cd05105          31 RWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTA---RSSEKQALMSELKIMTHLGPHLNIVNLL  107 (400)
T ss_pred             ceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCC---ChHHHHHHHHHHHHHHhcCCCCCeeeEE
Confidence            667888999999999999999999998765432 234469999996543   2233456788999999996 99999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhC---------------------------------------------------
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQN---------------------------------------------------  118 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~---------------------------------------------------  118 (412)
                      +++.+...+|+|||||.||+|..++....                                                   
T Consensus       108 ~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (400)
T cd05105         108 GACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQ  187 (400)
T ss_pred             EEEccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccc
Confidence            99999999999999999999988765421                                                   


Q ss_pred             -------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCc
Q 042539          119 -------------------------------------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPEN  155 (412)
Q Consensus       119 -------------------------------------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~N  155 (412)
                                                                 ...+++..+..++.||+.||+|||++||+||||||+|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~N  267 (400)
T cd05105         188 YVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARN  267 (400)
T ss_pred             cchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHh
Confidence                                                       1247888899999999999999999999999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ||++.++.+||+|||+++......                                                        
T Consensus       268 ill~~~~~~kL~DfGla~~~~~~~--------------------------------------------------------  291 (400)
T cd05105         268 VLLAQGKIVKICDFGLARDIMHDS--------------------------------------------------------  291 (400)
T ss_pred             EEEeCCCEEEEEeCCcceeccccc--------------------------------------------------------
Confidence            999999999999999987542110                                                        


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC---CCCCCCC
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT---PEFVGQR  311 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~---~~~~~~~  311 (412)
                           .........+++.|+|||++.+..++.++|||||||++|+|++ |..||.+......+...+...   +.....+
T Consensus       292 -----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (400)
T cd05105         292 -----NYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHAT  366 (400)
T ss_pred             -----cccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccCC
Confidence                 0011123457789999999999889999999999999999997 999998765444333333222   1223467


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .++.++|.+||+.||++||+    +.++.+
T Consensus       367 ~~l~~li~~cl~~dP~~RPt----~~~l~~  392 (400)
T cd05105         367 QEVYDIMVKCWNSEPEKRPS----FLHLSD  392 (400)
T ss_pred             HHHHHHHHHHCccCHhHCcC----HHHHHH
Confidence            88999999999999999994    555543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=2.8e-42  Score=336.36  Aligned_cols=281  Identities=24%  Similarity=0.358  Sum_probs=214.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeC--
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETD--   95 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~--   95 (412)
                      +|.+.+.||+|+||.||+|++....  .+..||+|++....  ......+.+.+|+.+++.+. |+||+++++.+...  
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~--~~~~~aiK~~~~~~--~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~   76 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETS--EEETVAIKKITNVF--SKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPG   76 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCC--cCceEEEEEecccc--ccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccc
Confidence            5899999999999999999987651  24459999986432  12234556677999999995 99999999875432  


Q ss_pred             --CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           96 --EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        96 --~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                        ..+|++|+|+. ++|..++..  ...+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++
T Consensus        77 ~~~~~~~~~e~~~-~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~  153 (332)
T cd07857          77 NFNELYLYEELME-ADLHQIIRS--GQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLAR  153 (332)
T ss_pred             cCCcEEEEEeccc-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCce
Confidence              46889999985 578766643  3459999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.....                                                           .........+||+.
T Consensus       154 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~g~~~  174 (332)
T cd07857         154 GFSENPG-----------------------------------------------------------ENAGFMTEYVATRW  174 (332)
T ss_pred             ecccccc-----------------------------------------------------------cccccccCcccCcc
Confidence            6531100                                                           00111234578999


Q ss_pred             CccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------------
Q 042539          254 YVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------------  304 (412)
Q Consensus       254 Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------------  304 (412)
                      |+|||++.+ ..++.++|||||||++|+|++|.+||.+.+....+..++...                            
T Consensus       175 y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (332)
T cd07857         175 YRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPK  254 (332)
T ss_pred             ccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCC
Confidence            999998876 467999999999999999999999998876544333222100                            


Q ss_pred             C----CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCch
Q 042539          305 P----EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEND  369 (412)
Q Consensus       305 ~----~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~~  369 (412)
                      .    ..+..+..+.+||.+||+.||.+||    ++.+++.||||+...-..-...+..|+.+..++++
T Consensus       255 ~~~~~~~~~~~~~~~~li~~~l~~~P~~R~----t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (332)
T cd07857         255 KPFESIFPNANPLALDLLEKLLAFDPTKRI----SVEEALEHPYLAIWHDPDDEPVCQKPFDFSFESED  319 (332)
T ss_pred             cchHhhCCCCCHHHHHHHHHHccCCcccCC----CHHHHhcChhhhhhcCccccccccccccCCccccc
Confidence            0    1123467899999999999999999    69999999999865433333345555555555544

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=7.8e-43  Score=328.17  Aligned_cols=253  Identities=26%  Similarity=0.452  Sum_probs=212.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++.+.||+|+||.||+|.++..+..    ||+|.+.+...   ......+.+|+++++.++||||+++++.+..++.
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~----~~ik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   73 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKI----MAVKTIRLEIN---EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGD   73 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcE----EEEEEEecccC---hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCE
Confidence            5789999999999999999999775544    99999876532   2345667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      +|+++||+.|++|..++.... ..+++..+..++.|++.||.|||+ .|++|+||||+||+++.+|.++|+|||.+..+.
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~  152 (265)
T cd06605          74 ISICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLV  152 (265)
T ss_pred             EEEEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhH
Confidence            999999999999998876543 458999999999999999999999 999999999999999999999999999986552


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ...                                                                 .....|+..|+|
T Consensus       153 ~~~-----------------------------------------------------------------~~~~~~~~~y~~  167 (265)
T cd06605         153 NSL-----------------------------------------------------------------AKTFVGTSSYMA  167 (265)
T ss_pred             HHH-----------------------------------------------------------------hhcccCChhccC
Confidence            110                                                                 011468889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCC-CCCCC--CChHHHHHHHHhhhhCCCc
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK-----NRKETFRNVLMKT-PEFVG--QRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~-----~~~~~~~~i~~~~-~~~~~--~~~~~~dli~~~L~~dP~~  328 (412)
                      ||.+.+..++.++|+|||||++|+|++|..||...     ...+....+.... +..+.  .+.++.++|.+||..||++
T Consensus       168 PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  247 (265)
T cd06605         168 PERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRE  247 (265)
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchh
Confidence            99999988999999999999999999999999764     2233444444332 22222  5788999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||    ++.+++.||||+.
T Consensus       248 Rp----t~~~ll~~~~~~~  262 (265)
T cd06605         248 RP----SYKELLEHPFIKK  262 (265)
T ss_pred             Cc----CHHHHhhCchhhc
Confidence            99    6999999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1e-42  Score=334.25  Aligned_cols=254  Identities=24%  Similarity=0.396  Sum_probs=211.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ..|.....||+|+||.||+|.+...+.    .||+|++.....    .....+.+|+.+++.++||||+++++.+..++.
T Consensus        21 ~~~~~~~~ig~g~~g~v~~~~~~~~~~----~v~iK~~~~~~~----~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~   92 (297)
T cd06659          21 SLLENYIKIGEGSTGIVCIAREKHSGR----QVAVKMMDLRKQ----QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEE   92 (297)
T ss_pred             hhHHhhhhcCCCCceeEEEEEEcCCCC----EEEEEEEEeccc----chHHHHHHHHHHHHhCCCCchhhhhhheeeCCe
Confidence            445566789999999999998876444    499999865432    223456779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+||||+.|++|..++..   ..+++..+..++.|++.||.|||++||+||||||+||+++.+|.+||+|||++..+..
T Consensus        93 ~~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~  169 (297)
T cd06659          93 LWVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK  169 (297)
T ss_pred             EEEEEecCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccc
Confidence            9999999999999876543   3489999999999999999999999999999999999999999999999999864421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               .......+|+..|+||
T Consensus       170 ~---------------------------------------------------------------~~~~~~~~~~~~y~aP  186 (297)
T cd06659         170 D---------------------------------------------------------------VPKRKSLVGTPYWMAP  186 (297)
T ss_pred             c---------------------------------------------------------------cccccceecCccccCH
Confidence            1                                                               0112345789999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |++.+..++.++|+|||||++|+|++|+.||...+..+....+......    ....+..+.++|++||+.+|.+||   
T Consensus       187 E~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rp---  263 (297)
T cd06659         187 EVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERA---  263 (297)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCc---
Confidence            9999888999999999999999999999999887766666555433221    234567899999999999999999   


Q ss_pred             CChhhhhcCCCCCCCC
Q 042539          334 RGACEIKEHVFFKGVR  349 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~~  349 (412)
                       ++.++++|+||.+..
T Consensus       264 -s~~~ll~~~~~~~~~  278 (297)
T cd06659         264 -TAQELLDHPFLLQTG  278 (297)
T ss_pred             -CHHHHhhChhhccCC
Confidence             699999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=3.8e-42  Score=321.71  Aligned_cols=253  Identities=30%  Similarity=0.471  Sum_probs=210.0

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +|+..+.||+|+||+||+|.+...+.    .|++|++...... ...+..+.+.+|+.+++.++|+||+++++++.++..
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~----~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   76 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGD----FFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDN   76 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCc----EEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCe
Confidence            57888999999999999998875444    4999998664321 223345667889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|++|||+.|++|..++....  .+++..+..++.|++.||.|||+.||+|+||+|+||+++.++.+||+|||++.....
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~  154 (258)
T cd06632          77 LYIFLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE  154 (258)
T ss_pred             EEEEEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            999999999999988876543  489999999999999999999999999999999999999999999999998865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                                .......|+..|+||
T Consensus       155 ~----------------------------------------------------------------~~~~~~~~~~~y~~p  170 (258)
T cd06632         155 F----------------------------------------------------------------SFAKSFKGSPYWMAP  170 (258)
T ss_pred             c----------------------------------------------------------------ccccccCCCcceeCH
Confidence            1                                                                012245688999999


Q ss_pred             eeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCCCC-CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KTPEF-VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |.+.... ++.++|+|||||++|+|++|+.||...........+..  ..+.. ...+..+.+||.+||..+|.+||   
T Consensus       171 e~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---  247 (258)
T cd06632         171 EVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRP---  247 (258)
T ss_pred             HHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCc---
Confidence            9988776 88999999999999999999999987665554444433  11222 34578899999999999999999   


Q ss_pred             CChhhhhcCCCC
Q 042539          334 RGACEIKEHVFF  345 (412)
Q Consensus       334 ~~~~e~l~h~ff  345 (412)
                       ++.+++.|||+
T Consensus       248 -~~~~~l~~~~~  258 (258)
T cd06632         248 -TAAELLEHPFV  258 (258)
T ss_pred             -CHHHHhcCCCC
Confidence             69999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=4.1e-42  Score=324.89  Aligned_cols=256  Identities=25%  Similarity=0.434  Sum_probs=207.9

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh------hhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH------AKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~------~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +|.+.+.||.|+||.||++.+..++.    .||+|.++.....      ......+.+.+|+.+++.++|+||+++++++
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~----~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   77 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGE----MMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFE   77 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCc----eeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEe
Confidence            58899999999999999998876544    4999988643211      1122345677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ...+.+++||||+.|++|..++...  +.+++..++.++.|++.||.|||++|++||||||+||+++.++.++|+|||++
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~  155 (272)
T cd06629          78 TTEEYLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGIS  155 (272)
T ss_pred             ccCCceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccc
Confidence            9999999999999999998887654  45899999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.....                                                             ..........|+.
T Consensus       156 ~~~~~~-------------------------------------------------------------~~~~~~~~~~~~~  174 (272)
T cd06629         156 KKSDDI-------------------------------------------------------------YDNDQNMSMQGSV  174 (272)
T ss_pred             cccccc-------------------------------------------------------------ccccccccccCCc
Confidence            653210                                                             0011123456889


Q ss_pred             CCccceeecCCC--CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CCC-----CCCCChHHHHHHHHhhh
Q 042539          253 EYVSPEVVRGDG--HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPE-----FVGQRTALTDLIQRLLE  323 (412)
Q Consensus       253 ~Y~APE~l~~~~--~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~~-----~~~~~~~~~dli~~~L~  323 (412)
                      .|+|||.+.+..  ++.++|+|||||++|+|++|..||...+..+....+...  .+.     ...++..+.++|.+||.
T Consensus       175 ~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  254 (272)
T cd06629         175 FWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFT  254 (272)
T ss_pred             cccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhc
Confidence            999999987754  789999999999999999999999876555444333221  111     12457899999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      .+|.+||    +++++++||||
T Consensus       255 ~~p~~Rp----s~~~il~~~~~  272 (272)
T cd06629         255 INPDNRP----TARELLQHPFI  272 (272)
T ss_pred             CChhhCC----CHHHHhhCCCC
Confidence            9999999    69999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.5e-42  Score=322.30  Aligned_cols=252  Identities=21%  Similarity=0.286  Sum_probs=208.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|++.+.||+|+||.||+|.+...     ..||+|.++.....     .+.+.+|+.++++++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~-----~~v~iK~~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~   71 (261)
T cd05068           2 EIDRTSIQLLRKLGAGQFGEVWEGLWNNT-----TPVAVKTLKPGTMD-----PKDFLAEAQIMKKLRHPKLIQLYAVCT   71 (261)
T ss_pred             ccchhheeeEEEecccCCccEEEEEecCC-----eEEEEEeeCCCccc-----HHHHHHHHHHHHHCCCCCccceeEEEe
Confidence            56778999999999999999999986532     23999999765431     334667999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      ..+.+|+||||+.|++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+++
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          72 LEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             cCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEE
Confidence            99999999999999999988766554568999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                              .......++..
T Consensus       152 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  169 (261)
T cd05068         152 VIKEDIY--------------------------------------------------------------EAREGAKFPIK  169 (261)
T ss_pred             EccCCcc--------------------------------------------------------------cccCCCcCcee
Confidence            6521100                                                              00001123457


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||.+.+..++.++|+|||||++|+|++ |+.||.+.+.......+....  +.....+..+.++|.+||+.+|.+||
T Consensus       170 y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp  249 (261)
T cd05068         170 WTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRP  249 (261)
T ss_pred             ccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCC
Confidence            999999998889999999999999999998 999999988777776665432  22345678999999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          ++.++.+
T Consensus       250 ----~~~~l~~  256 (261)
T cd05068         250 ----TFETLQW  256 (261)
T ss_pred             ----CHHHHHH
Confidence                5777653

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=2.7e-43  Score=334.26  Aligned_cols=256  Identities=26%  Similarity=0.412  Sum_probs=212.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|++++.||+|+||.||++.+..++    ..||+|+++....   ......+.+|+.+++.++|+||+++++++..++.
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~----~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   76 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTK----EVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTK   76 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCC----eEEEEEEeccccc---hHHHHHHHHHHHHHHcCCCCccHhhhcccccCCc
Confidence            46888999999999999999887644    3499999865432   2234567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+||||+.|++|..++..   +.+++..++.++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++..+..
T Consensus        77 ~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06642          77 LWIIMEYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD  153 (277)
T ss_pred             eEEEEEccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccC
Confidence            9999999999999877643   3589999999999999999999999999999999999999999999999999865421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                               .......|+..|+||
T Consensus       154 ~~---------------------------------------------------------------~~~~~~~~~~~y~aP  170 (277)
T cd06642         154 TQ---------------------------------------------------------------IKRNTFVGTPFWMAP  170 (277)
T ss_pred             cc---------------------------------------------------------------hhhhcccCcccccCH
Confidence            10                                                               111234688899999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-CC-CCCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-EF-VGQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~~-~~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      |++.+..++.++|+|||||++|+|++|..||...........+....+ .. ...+.++.++|.+||..+|.+||    +
T Consensus       171 E~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----~  246 (277)
T cd06642         171 EVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRP----T  246 (277)
T ss_pred             HHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCc----C
Confidence            999988889999999999999999999999987665554444333222 11 23567899999999999999999    6


Q ss_pred             hhhhhcCCCCCCCCc
Q 042539          336 ACEIKEHVFFKGVRW  350 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~  350 (412)
                      +.++++|+||....+
T Consensus       247 ~~~il~~~~~~~~~~  261 (277)
T cd06642         247 AKELLKHKFITRYTK  261 (277)
T ss_pred             HHHHHHhHHHHHHhh
Confidence            999999999986554

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.9e-42  Score=337.98  Aligned_cols=254  Identities=26%  Similarity=0.419  Sum_probs=207.1

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||.||++.+..++.    .||||++.+...  .......+.+|+.+++.++|+||+++++++..+
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   86 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGA----KVAIKKLYRPFQ--SELFAKRAYRELRLLKHMKHENVIGLLDVFTPD   86 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCc----EEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCCccceeeeecCC
Confidence            35789999999999999999999877544    499999865421  223445677899999999999999999999765


Q ss_pred             C------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           96 E------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        96 ~------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      .      .+++||||+ |++|..++..   ..+++..++.++.|++.||+|||++||+||||||+||+++.+|.+||+||
T Consensus        87 ~~~~~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~df  162 (343)
T cd07880          87 LSLDRFHDFYLVMPFM-GTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDF  162 (343)
T ss_pred             ccccccceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeec
Confidence            4      469999999 7788766543   34899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |++.....                                                                  ......
T Consensus       163 g~~~~~~~------------------------------------------------------------------~~~~~~  176 (343)
T cd07880         163 GLARQTDS------------------------------------------------------------------EMTGYV  176 (343)
T ss_pred             cccccccc------------------------------------------------------------------Cccccc
Confidence            99864311                                                                  011335


Q ss_pred             cCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-----------------------
Q 042539          250 GTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-----------------------  305 (412)
Q Consensus       250 gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-----------------------  305 (412)
                      +++.|+|||.+.+ ..++.++|+|||||++|+|++|.+||.+.+....+..++....                       
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (343)
T cd07880         177 VTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLP  256 (343)
T ss_pred             cCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhcc
Confidence            7889999999876 3578999999999999999999999998776554444332110                       


Q ss_pred             ---------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 ---------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 ---------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                               .....++.+.++|.+||+.||.+|+    ++.+++.||||+...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~----t~~~~l~~~~~~~~~  305 (343)
T cd07880         257 RFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRI----TAAEALAHPYFEEFH  305 (343)
T ss_pred             ccCcchHHHhccCCChHHHHHHHHHcCCChhhCC----CHHHHhcCccHhhhc
Confidence                     0134567899999999999999999    699999999998654

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=2.8e-42  Score=329.71  Aligned_cols=264  Identities=19%  Similarity=0.278  Sum_probs=215.3

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccce
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPK   87 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~   87 (412)
                      .....+..++|++.+.||+|+||.||++.++.... .....+|+|.+.....   ......+.+|+.+++.+ +|+||++
T Consensus         4 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~   80 (293)
T cd05053           4 DPEWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT---EKDLSDLVSEMEMMKMIGKHKNIIN   80 (293)
T ss_pred             CcccccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCC---HHHHHHHHHHHHHHHhhcCCCCeee
Confidence            45678888999999999999999999998865442 2345699999865422   22345577899999999 7999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhh--------------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQ--------------NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP  153 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~--------------~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp  153 (412)
                      +++++..++.++++|||+.+|+|..++...              ....+++..+..++.|++.||.|||++||+||||||
T Consensus        81 ~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp  160 (293)
T cd05053          81 LLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAA  160 (293)
T ss_pred             EEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccce
Confidence            999999999999999999999998887542              234689999999999999999999999999999999


Q ss_pred             CceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          154 ENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       154 ~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                      +|||++.++.+||+|||+++.+.....                                                     
T Consensus       161 ~Nil~~~~~~~kL~Dfg~~~~~~~~~~-----------------------------------------------------  187 (293)
T cd05053         161 RNVLVTEDHVMKIADFGLARDIHHIDY-----------------------------------------------------  187 (293)
T ss_pred             eeEEEcCCCeEEeCccccccccccccc-----------------------------------------------------
Confidence            999999999999999999976421100                                                     


Q ss_pred             ccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCC
Q 042539          234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQ  310 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~  310 (412)
                              ........++..|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+.+..+.....  .....
T Consensus       188 --------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  259 (293)
T cd05053         188 --------YRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYRMEKPQNC  259 (293)
T ss_pred             --------eeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCC
Confidence                    000111234668999999988889999999999999999997 9999999887777766654321  22345


Q ss_pred             ChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       311 ~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +..+.+||.+||..||.+||    ++.++++
T Consensus       260 ~~~~~~li~~~l~~~p~~Rp----s~~eil~  286 (293)
T cd05053         260 TQELYHLMRDCWHEVPSQRP----TFKQLVE  286 (293)
T ss_pred             CHHHHHHHHHHcccCcccCc----CHHHHHH
Confidence            68999999999999999999    6888876

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=2.1e-42  Score=332.69  Aligned_cols=260  Identities=26%  Similarity=0.357  Sum_probs=201.7

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      -.+++|+++++||+|+||.||+|.++.++.    .||||.+.....  .......+.+|+.++++++||||+++++++..
T Consensus         9 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~----~~aik~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   82 (310)
T cd07865           9 DEVSKYEKLAKIGQGTFGEVFKARHKKTKQ----IVALKKVLMENE--KEGFPITALREIKILQLLKHENVVNLIEICRT   82 (310)
T ss_pred             chhhheEEEEEeecCCCEEEEEEEECCCCc----EEEEEEEeccCC--cCCchhHHHHHHHHHHhCCCCCccceEEEEec
Confidence            346789999999999999999999877544    499999865432  11223345679999999999999999998865


Q ss_pred             CC--------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           95 DE--------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        95 ~~--------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ..        ..|+||||+.+ +|..++... ...+++.+++.++.|++.||.|||++|++|+||||+||+++.++.+||
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl  160 (310)
T cd07865          83 KATPYNRYKGSFYLVFEFCEH-DLAGLLSNK-NVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKL  160 (310)
T ss_pred             ccccccCCCceEEEEEcCCCc-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEE
Confidence            43        46999999965 666655443 235899999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||++..+.....                                                           .......
T Consensus       161 ~dfg~~~~~~~~~~-----------------------------------------------------------~~~~~~~  181 (310)
T cd07865         161 ADFGLARAFSLSKN-----------------------------------------------------------SKPNRYT  181 (310)
T ss_pred             CcCCCcccccCCcc-----------------------------------------------------------cCCCCcc
Confidence            99999975521100                                                           0001112


Q ss_pred             ccccCCCCccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc---CCC----------------C
Q 042539          247 SFVGTEEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM---KTP----------------E  306 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~---~~~----------------~  306 (412)
                      ...++..|+|||++.+.. ++.++|+|||||++|+|++|++||.+.+.......+..   ..+                .
T Consensus       182 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (310)
T cd07865         182 NRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKME  261 (310)
T ss_pred             CcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhcc
Confidence            346788999999987654 68899999999999999999999988765543322211   000                0


Q ss_pred             --------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 --------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 --------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                                    ....+..+.+||.+||..||.+||    +++++++||||
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~----t~~e~l~h~~f  310 (310)
T cd07865         262 LPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRI----DADTALNHDFF  310 (310)
T ss_pred             CCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhcc----CHHHHhcCCCC
Confidence                          001246788999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=3.9e-42  Score=322.75  Aligned_cols=256  Identities=29%  Similarity=0.507  Sum_probs=215.7

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++.+.||+|++|.||+|.+..++.    .||+|++......   .....+.+|+.++..++|+||+++++++...+.
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~----~~~vk~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   73 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGK----IYALKKIHVDGDE---EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGE   73 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCc----EEEEEEeccCcch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCe
Confidence            479999999999999999999887544    4999998765421   345667789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      +++||||+.|++|..++...  ..+++..+..++.|++.||.|||+ .|++||||+|+||+++.++.++|+|||++....
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~  151 (264)
T cd06623          74 ISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLE  151 (264)
T ss_pred             EEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecc
Confidence            99999999999999887654  459999999999999999999999 999999999999999999999999999987542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........++..|+|
T Consensus       152 ~~---------------------------------------------------------------~~~~~~~~~~~~y~~  168 (264)
T cd06623         152 NT---------------------------------------------------------------LDQCNTFVGTVTYMS  168 (264)
T ss_pred             cC---------------------------------------------------------------CCcccceeecccccC
Confidence            11                                                               011124468889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC---CHHHHHHHHhcCC-CCC-CC-CChHHHHHHHHhhhhCCCccC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK---NRKETFRNVLMKT-PEF-VG-QRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~---~~~~~~~~i~~~~-~~~-~~-~~~~~~dli~~~L~~dP~~R~  330 (412)
                      ||.+.+..++.++|+|||||++|+|++|..||...   ...+....+.... +.. .. .+..+.++|.+||..+|++||
T Consensus       169 pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  248 (264)
T cd06623         169 PERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRP  248 (264)
T ss_pred             HhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCC
Confidence            99999888899999999999999999999999886   4445555554332 122 22 578899999999999999999


Q ss_pred             CCCCChhhhhcCCCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~~  349 (412)
                          ++.++++||||+..+
T Consensus       249 ----~~~~ll~~~~~~~~~  263 (264)
T cd06623         249 ----SAAELLQHPFIKKAD  263 (264)
T ss_pred             ----CHHHHHhCHHHHhcc
Confidence                699999999998653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=6.2e-42  Score=326.81  Aligned_cols=254  Identities=24%  Similarity=0.413  Sum_probs=212.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      .+|...+.||+|++|.||++.+...+.    .+|+|+++...    ......+.+|+.+++.++|+||+++++++...+.
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~----~~~iK~~~~~~----~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~   90 (285)
T cd06648          19 SYLDNFVKIGEGSTGIVCIATDKSTGR----QVAVKKMDLRK----QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDE   90 (285)
T ss_pred             HhhhcceEeccCCCeEEEEEEECCCCC----EEEEEEEeccc----hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCe
Confidence            356667899999999999998876543    49999885432    1234456789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+++||+.|++|..++..   ..+++..+..++.|++.||.|||++||+||||+|+||+++.++.++|+|||++.....
T Consensus        91 ~~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~  167 (285)
T cd06648          91 LWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK  167 (285)
T ss_pred             EEEEEeccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhcc
Confidence            9999999999999887765   3489999999999999999999999999999999999999999999999998764321


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                               ........|++.|+||
T Consensus       168 ~---------------------------------------------------------------~~~~~~~~~~~~y~aP  184 (285)
T cd06648         168 E---------------------------------------------------------------VPRRKSLVGTPYWMAP  184 (285)
T ss_pred             C---------------------------------------------------------------CcccccccCCccccCH
Confidence            0                                                               0111234689999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC----CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~----~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |.+.+..++.++|+|||||++|+|++|..||...+.......+....+..    ...+..+.+||++||..+|.+||   
T Consensus       185 E~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp---  261 (285)
T cd06648         185 EVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRA---  261 (285)
T ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCc---
Confidence            99988889999999999999999999999998877766666665443221    22568899999999999999999   


Q ss_pred             CChhhhhcCCCCCCCC
Q 042539          334 RGACEIKEHVFFKGVR  349 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~~  349 (412)
                       ++.++++|+||+...
T Consensus       262 -t~~~il~~~~~~~~~  276 (285)
T cd06648         262 -TAAELLNHPFLAKAG  276 (285)
T ss_pred             -CHHHHccCcccccCC
Confidence             689999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=4.1e-42  Score=322.67  Aligned_cols=251  Identities=23%  Similarity=0.284  Sum_probs=207.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|++++.||+|+||+||++++...     ..+|+|.++.....     ...+.+|+.+++.++||||+++++++..
T Consensus         1 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~-----~~~aik~~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~~   70 (256)
T cd05113           1 IDPKDLTFLKELGTGQFGVVKYGKWRGQ-----YDVAIKMIKEGSMS-----EDEFIEEAKVMMKLSHEKLVQLYGVCTK   70 (256)
T ss_pred             CChHHeEEeeEecCcccceEEEEEecCC-----CcEEEEEcCCCccc-----HHHHHHHHHHHhcCCCCCeeeEEEEEcc
Confidence            3568999999999999999999987542     23899998754331     2346679999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      +..+|+||||+.+|+|..++.... ..+++.++..++.||+.||.|||++|++|+||||+||+++.++.+||+|||+++.
T Consensus        71 ~~~~~lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~  149 (256)
T cd05113          71 QRPIYIVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRY  149 (256)
T ss_pred             CCCcEEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCcccee
Confidence            999999999999999988876533 3589999999999999999999999999999999999999999999999998865


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ......                                                              .......++..|
T Consensus       150 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~y  167 (256)
T cd05113         150 VLDDEY--------------------------------------------------------------TSSVGSKFPVRW  167 (256)
T ss_pred             cCCCce--------------------------------------------------------------eecCCCccChhh
Confidence            421100                                                              000112356789


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||.+.+..++.++|+|||||++|+|++ |..||...+..+....+......  ....+..+.++|.+||..||.+|| 
T Consensus       168 ~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-  246 (256)
T cd05113         168 SPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERP-  246 (256)
T ss_pred             CCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCC-
Confidence            99999998889999999999999999998 99999988877776666654322  233568999999999999999999 


Q ss_pred             CCCChhhhhcC
Q 042539          332 YLRGACEIKEH  342 (412)
Q Consensus       332 ~~~~~~e~l~h  342 (412)
                         ++.+++++
T Consensus       247 ---~~~~ll~~  254 (256)
T cd05113         247 ---TFQQLLSS  254 (256)
T ss_pred             ---CHHHHHHh
Confidence               68888753

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=5e-42  Score=330.80  Aligned_cols=264  Identities=19%  Similarity=0.257  Sum_probs=212.3

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCC---CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCcc
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPT---ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFL   85 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnI   85 (412)
                      .+..++..++|.+.+.||+|+||.||+|++...+..   ....+|+|.++...   .......+.+|+.+++.+ +|+||
T Consensus        10 ~~~~~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~~h~~i   86 (307)
T cd05098          10 DPRWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNI   86 (307)
T ss_pred             CCcceeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC---ChHHHHHHHHHHHHHHHhcCCCCE
Confidence            345677789999999999999999999987653321   23459999997542   122345677799999999 69999


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeC
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND--------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL  151 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~--------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDl  151 (412)
                      +++++++..++.+|+||||+.+|+|..++.....              ..++..++..++.|++.||+|||++|++||||
T Consensus        87 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dl  166 (307)
T cd05098          87 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDL  166 (307)
T ss_pred             eeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccc
Confidence            9999999999999999999999999988865421              24788999999999999999999999999999


Q ss_pred             CCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCC
Q 042539          152 KPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSP  231 (412)
Q Consensus       152 Kp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (412)
                      ||+|||++.++.+||+|||+++.......                                                   
T Consensus       167 kp~Nill~~~~~~kL~dfg~a~~~~~~~~---------------------------------------------------  195 (307)
T cd05098         167 AARNVLVTEDNVMKIADFGLARDIHHIDY---------------------------------------------------  195 (307)
T ss_pred             cHHheEEcCCCcEEECCCcccccccccch---------------------------------------------------
Confidence            99999999999999999999875421100                                                   


Q ss_pred             ccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC-C-CC
Q 042539          232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP-E-FV  308 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~-~~  308 (412)
                                ........++..|+|||++.+..++.++|+|||||++|+|++ |..||.+.+..+.+..+..... . ..
T Consensus       196 ----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (307)
T cd05098         196 ----------YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS  265 (307)
T ss_pred             ----------hhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCCCCCCC
Confidence                      000111234578999999998889999999999999999998 9999998887776666554332 2 23


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..+.++.+||.+||..+|.+||    ++.++++
T Consensus       266 ~~~~~~~~li~~~l~~~p~~Rp----s~~evl~  294 (307)
T cd05098         266 NCTNELYMMMRDCWHAVPSQRP----TFKQLVE  294 (307)
T ss_pred             cCCHHHHHHHHHHcccChhhCc----CHHHHHH
Confidence            4578999999999999999999    5777765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=5e-42  Score=323.24  Aligned_cols=251  Identities=20%  Similarity=0.270  Sum_probs=205.9

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|+++++||+|+||.||+|.+..+.     .||+|.+++....     ...+.+|+++++.++|+||+++++.+.
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~-----~valK~~~~~~~~-----~~~~~~E~~~l~~l~~~~i~~~~~~~~   71 (262)
T cd05071           2 EIPRESLRLEVKLGQGCFGEVWMGTWNGTT-----RVAIKTLKPGTMS-----PEAFLQEAQVMKKLRHEKLVQLYAVVS   71 (262)
T ss_pred             CCChHHeeEeeecCCCCCCcEEEEEecCCc-----eEEEEecccCccC-----HHHHHHHHHHHHhCCCCCcceEEEEEC
Confidence            456789999999999999999999876432     2999999764431     234677999999999999999999875


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      . ...|+||||+.+|+|..++.......+++..+..++.|++.||.|||+.||+||||||+||+++.++.+||+|||+++
T Consensus        72 ~-~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~  150 (262)
T cd05071          72 E-EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLAR  150 (262)
T ss_pred             C-CCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCcee
Confidence            4 568999999999999988876544568899999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+....                                                              ........++..
T Consensus       151 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~~  168 (262)
T cd05071         151 LIEDNE--------------------------------------------------------------YTARQGAKFPIK  168 (262)
T ss_pred             eccccc--------------------------------------------------------------cccccCCcccce
Confidence            542110                                                              000112346778


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||++.+..++.++|+|||||++|+|++ |..||.+....+....+....  +.....+..+.++|.+||+.||++||
T Consensus       169 y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  248 (262)
T cd05071         169 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP  248 (262)
T ss_pred             ecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCC
Confidence            999999988889999999999999999999 999999887777776665432  22345678899999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          ++.++++
T Consensus       249 ----~~~~~~~  255 (262)
T cd05071         249 ----TFEYLQA  255 (262)
T ss_pred             ----CHHHHHH
Confidence                5676654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=3.5e-42  Score=329.37  Aligned_cols=259  Identities=24%  Similarity=0.311  Sum_probs=210.6

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCC------------CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPT------------ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH   82 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~------------~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h   82 (412)
                      +..++|+++++||+|+||.||+|.+...+..            ....||+|++.....   ......+.+|++++++++|
T Consensus         2 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~~   78 (296)
T cd05051           2 FPRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS---DNAREDFLKEVKILSRLSD   78 (296)
T ss_pred             CchhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC---HHHHHHHHHHHHHHHhcCC
Confidence            4678999999999999999999987654422            234589999876532   2345667789999999999


Q ss_pred             CccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhC---------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Q 042539           83 PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN---------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP  153 (412)
Q Consensus        83 pnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~---------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp  153 (412)
                      +||+++++++..++.++++||++.+++|..++....         ...+++..+..++.|++.||.|||++||+||||||
T Consensus        79 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp  158 (296)
T cd05051          79 PNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLAT  158 (296)
T ss_pred             CCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccch
Confidence            999999999999999999999999999988876543         12589999999999999999999999999999999


Q ss_pred             CceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          154 ENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       154 ~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                      +||+++.++.++|+|||+++......                                                      
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~------------------------------------------------------  184 (296)
T cd05051         159 RNCLVGKNYTIKIADFGMSRNLYSSD------------------------------------------------------  184 (296)
T ss_pred             hceeecCCCceEEccccceeecccCc------------------------------------------------------
Confidence            99999999999999999986542110                                                      


Q ss_pred             ccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh--CCCCCCCCCHHHHHHHHhcC--------
Q 042539          234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY--GTTPFRGKNRKETFRNVLMK--------  303 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~--g~~Pf~~~~~~~~~~~i~~~--------  303 (412)
                             .........++..|+|||++.+..++.++|||||||++|||++  |..||...+..+.+..+...        
T Consensus       185 -------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  257 (296)
T cd05051         185 -------YYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQI  257 (296)
T ss_pred             -------ceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccc
Confidence                   0011223456789999999988889999999999999999997  78999887777766655432        


Q ss_pred             -CCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          304 -TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       304 -~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                       .+.....+.++.++|.+||+.||.+||    ++.++++
T Consensus       258 ~~~~~~~~~~~l~~li~~cl~~~p~~Rp----t~~el~~  292 (296)
T cd05051         258 YLPRPPNCPKDIYELMLECWRRDEEDRP----TFREIHL  292 (296)
T ss_pred             cCCCccCCCHHHHHHHHHHhccChhcCC----CHHHHHH
Confidence             111234568999999999999999999    6788764

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-42  Score=333.03  Aligned_cols=259  Identities=26%  Similarity=0.360  Sum_probs=200.1

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--C
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--E   96 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--~   96 (412)
                      +|.+++.||+|+||.||+|.+...  ..+..||+|++.+.... .......+.+|+.+++.++||||+++++++.+.  .
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~--~~~~~~alK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   77 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNG--KDGKEYAIKKFKGDKEQ-YTGISQSACREIALLRELKHENVVSLVEVFLEHADK   77 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCC--CCCCeEEEEEecccccc-ccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCc
Confidence            589999999999999999998762  13345999999764321 122234556799999999999999999999988  7


Q ss_pred             eEEEEeeccCCCCchhHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc----CCCEEEccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ---NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ----SGHVTLTDF  169 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~---~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~----~g~vkL~DF  169 (412)
                      .+|+||||+.+ +|..++...   ....+++..++.++.||+.||.|||++||+||||||+|||++.    +|.+||+||
T Consensus        78 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Df  156 (316)
T cd07842          78 SVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDL  156 (316)
T ss_pred             eEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCC
Confidence            89999999976 454443322   1235899999999999999999999999999999999999999    899999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.+.....                                                            ........+
T Consensus       157 g~~~~~~~~~~------------------------------------------------------------~~~~~~~~~  176 (316)
T cd07842         157 GLARLFNAPLK------------------------------------------------------------PLADLDPVV  176 (316)
T ss_pred             ccccccCCCcc------------------------------------------------------------cccccCCcc
Confidence            99875421100                                                            001122456


Q ss_pred             cCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH---------HHHHHhc-----------------
Q 042539          250 GTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKE---------TFRNVLM-----------------  302 (412)
Q Consensus       250 gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~---------~~~~i~~-----------------  302 (412)
                      +|+.|+|||++.+. .++.++|||||||++|+|++|++||.+.....         .+..++.                 
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  256 (316)
T cd07842         177 VTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMP  256 (316)
T ss_pred             ccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcc
Confidence            88999999988764 57899999999999999999999998654321         1111100                 


Q ss_pred             ---------CCCCCC------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          303 ---------KTPEFV------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       303 ---------~~~~~~------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                               ....+.            ..+.++.++|.+||+.||++||    ++.++++||||
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp----s~~eil~~~~f  316 (316)
T cd07842         257 EYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRI----TAEEALEHPYF  316 (316)
T ss_pred             cchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCc----CHHHHhcCCCC
Confidence                     001111            3456799999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=4.5e-42  Score=326.02  Aligned_cols=261  Identities=19%  Similarity=0.304  Sum_probs=209.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ++..++|++.+.||+|+||.||+|.+...+ ......||+|.+.....   ......+.+|+.+++.++|+||+++++++
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~   78 (277)
T cd05036           2 EVPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS---EQDESDFLMEALIMSKFNHQNIVRLIGVS   78 (277)
T ss_pred             CCCHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            456789999999999999999999886521 11344599998854322   22345577799999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC---CE
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQND-----RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---HV  164 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~-----~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g---~v  164 (412)
                      .+.+..++||||+.|++|..++.....     ..+++..+..++.||+.||+|||++|++||||||+|||++.++   .+
T Consensus        79 ~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~  158 (277)
T cd05036          79 FERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVA  158 (277)
T ss_pred             ccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcce
Confidence            999999999999999999988765432     2488999999999999999999999999999999999998765   58


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+|||+++.+......                                                             ..
T Consensus       159 kl~dfg~~~~~~~~~~~-------------------------------------------------------------~~  177 (277)
T cd05036         159 KIADFGMARDIYRASYY-------------------------------------------------------------RK  177 (277)
T ss_pred             EeccCccccccCCccce-------------------------------------------------------------ec
Confidence            99999999764211000                                                             00


Q ss_pred             CcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-C-CCCCCChHHHHHHHHh
Q 042539          245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-P-EFVGQRTALTDLIQRL  321 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~-~~~~~~~~~~dli~~~  321 (412)
                      .....++..|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+.... . .....+..+.++|.+|
T Consensus       178 ~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~c  257 (277)
T cd05036         178 GGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDC  257 (277)
T ss_pred             CCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHH
Confidence            112233567999999998889999999999999999996 999999888777665554332 1 2234678999999999


Q ss_pred             hhhCCCccCCCCCChhhhhcC
Q 042539          322 LEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      |+.+|++||    ++.++++|
T Consensus       258 l~~~p~~Rp----s~~~vl~~  274 (277)
T cd05036         258 WQHTPEDRP----NFATILER  274 (277)
T ss_pred             cCCCcccCc----CHHHHHHH
Confidence            999999999    68888875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=7.8e-42  Score=320.96  Aligned_cols=256  Identities=30%  Similarity=0.478  Sum_probs=209.8

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++.+.||+|+||.||++.+...+.    .||+|+++.....  ......+..|+.+++.++|+||+++++.+.+.+.+
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~----~~~ik~~~~~~~~--~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~   74 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGE----LMAVKEIRIQDND--PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKV   74 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCc----EEEEEEEECcccc--hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEE
Confidence            68999999999999999998876444    4999999766532  34567788899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      ++|+||+.|++|.+++...  ..+++..++.++.|++.||.|||++||+|+||+|+||+++.++.+||+|||++......
T Consensus        75 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~  152 (264)
T cd06626          75 YIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN  152 (264)
T ss_pred             EEEEecCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCC
Confidence            9999999999998887653  34889999999999999999999999999999999999999999999999998765321


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      ..                                                           ..........++..|+|||
T Consensus       153 ~~-----------------------------------------------------------~~~~~~~~~~~~~~~~~PE  173 (264)
T cd06626         153 TT-----------------------------------------------------------TMGEEVQSLAGTPAYMAPE  173 (264)
T ss_pred             CC-----------------------------------------------------------cccccccCCcCCcCccChh
Confidence            10                                                           0000012346888999999


Q ss_pred             eecCCC---CCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHhcC-CCCC---CCCChHHHHHHHHhhhhCCCccC
Q 042539          259 VVRGDG---HEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLMK-TPEF---VGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       259 ~l~~~~---~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~~~-~~~~---~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      ++.+..   ++.++|||||||++|+|++|+.||...+. ......+... .+.+   ...+..+.+||.+||+.+|.+||
T Consensus       174 ~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~  253 (264)
T cd06626         174 VITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRP  253 (264)
T ss_pred             hccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCC
Confidence            998766   78999999999999999999999977533 3333233322 2222   23478899999999999999999


Q ss_pred             CCCCChhhhhcCCCC
Q 042539          331 GYLRGACEIKEHVFF  345 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff  345 (412)
                          ++.+++.|||+
T Consensus       254 ----~~~~i~~~~~~  264 (264)
T cd06626         254 ----TASELLQHPFV  264 (264)
T ss_pred             ----CHHHHhcCCCC
Confidence                69999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=5.7e-42  Score=322.88  Aligned_cols=253  Identities=29%  Similarity=0.442  Sum_probs=205.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++.++||+|+||.||+|+++.++.    .||||.+...... .......+.+|+.+++.++||||+++++++.+.+
T Consensus         1 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~----~~~iK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   75 (267)
T cd08228           1 LANFQIEKKIGRGQFSEVYRATCLLDRK----PVALKKVQIFEMM-DAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDN   75 (267)
T ss_pred             CcceeeeeeeccCCCeeEEEEEEeCCCC----EEEEEEeeccccC-CHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECC
Confidence            4789999999999999999999877554    4999988654332 2344556778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ..+++|||+.+|+|..++...  ....+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++..
T Consensus        76 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~  155 (267)
T cd08228          76 ELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRF  155 (267)
T ss_pred             eEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECcccccee
Confidence            999999999999998776532  234588999999999999999999999999999999999999999999999999875


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                               .......|++.|
T Consensus       156 ~~~~~---------------------------------------------------------------~~~~~~~~~~~~  172 (267)
T cd08228         156 FSSKT---------------------------------------------------------------TAAHSLVGTPYY  172 (267)
T ss_pred             ccchh---------------------------------------------------------------HHHhcCCCCccc
Confidence            42111                                                               011234688899


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHHhcCC-CCC--CCCChHHHHHHHHhhhhCCCcc
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN--RKETFRNVLMKT-PEF--VGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--~~~~~~~i~~~~-~~~--~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +|||.+.+..++.++|+|||||++|+|++|+.||....  .......+.... +..  ...+..+.++|.+||..+|++|
T Consensus       173 ~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  252 (267)
T cd08228         173 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQR  252 (267)
T ss_pred             cChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccC
Confidence            99999998888999999999999999999999996543  233333333222 222  2356789999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    ++.++++
T Consensus       253 p----~~~~vl~  260 (267)
T cd08228         253 P----DIGYVHQ  260 (267)
T ss_pred             c----CHHHHHH
Confidence            9    5788775

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.5e-42  Score=337.71  Aligned_cols=261  Identities=23%  Similarity=0.328  Sum_probs=203.8

Q ss_pred             eeeeecc--CceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEE
Q 042539           23 LKILGKG--AMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAW  100 (412)
Q Consensus        23 ~~~LG~G--~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~l  100 (412)
                      ...||+|  +||+||+|++..++..    ||+|++......  ....+.+.+|+.+++.++||||++++++|..++.+|+
T Consensus         3 ~~~ig~g~~~~~~v~~a~~~~~~~~----vaiK~~~~~~~~--~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~   76 (328)
T cd08226           3 QVEIGRGFCNLTSVYLARHTPTGTL----VTVRITDLENCT--EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWV   76 (328)
T ss_pred             HHHhCCcccCceeEEEEEEcCCCcE----EEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEE
Confidence            3466776  9999999998775544    999998765432  2334677889999999999999999999999999999


Q ss_pred             EeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhh
Q 042539          101 AVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~  180 (412)
                      ||||+.+++|..++.......+++..++.++.|++.||+|||++||+||||||+|||++.++.++++|||.+........
T Consensus        77 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~  156 (328)
T cd08226          77 ISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQ  156 (328)
T ss_pred             EEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCc
Confidence            99999999998887765445689999999999999999999999999999999999999999999999986643211000


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                      ..                                        .                ..........++..|+|||++
T Consensus       157 ~~----------------------------------------~----------------~~~~~~~~~~~~~~y~aPE~~  180 (328)
T cd08226         157 KA----------------------------------------K----------------VVYDFPQFSTSVLPWLSPELL  180 (328)
T ss_pred             cc----------------------------------------c----------------ccccccccccCccCccChhhh
Confidence            00                                        0                000001122356779999999


Q ss_pred             cCC--CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC--------------------------------
Q 042539          261 RGD--GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE--------------------------------  306 (412)
Q Consensus       261 ~~~--~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~--------------------------------  306 (412)
                      .+.  .++.++|||||||++|+|++|.+||.+..........+...+.                                
T Consensus       181 ~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (328)
T cd08226         181 RQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVA  260 (328)
T ss_pred             cCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhc
Confidence            774  4688999999999999999999999887655554443322110                                


Q ss_pred             ----------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          307 ----------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       307 ----------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                      ....++.+.+||.+||+.||++||    +++++++|+||+.+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp----ta~e~l~~~~~~~~~  315 (328)
T cd08226         261 AGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRP----SASSLLSHAFFKQVK  315 (328)
T ss_pred             cccccccccccccchhhhhhhHHHHHHHHHHccCCcccCC----CHHHHhhCHHHHHHH
Confidence                            012346789999999999999999    799999999997543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=3.8e-42  Score=327.04  Aligned_cols=252  Identities=26%  Similarity=0.398  Sum_probs=204.7

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      |++++.||.|++|.||++.++.++.    .||+|++......  ......+.+|+++++.++|+||+++++++.+++..|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~----~~~ik~~~~~~~~--~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~   74 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGE----IVALKKIRLETED--EGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLY   74 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCC----EEEEEEeeccccc--ccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEE
Confidence            6889999999999999999877554    4999999765322  223345667999999999999999999999999999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      ++|||+. ++|..++.......+++..+..++.|++.||+|||++|++||||+|+||+++.++.++|+|||+++..... 
T Consensus        75 iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~-  152 (283)
T cd07835          75 LVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVP-  152 (283)
T ss_pred             EEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCC-
Confidence            9999995 57877776554346899999999999999999999999999999999999999999999999998643210 


Q ss_pred             hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcccee
Q 042539          180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  259 (412)
                                                                                    ........++..|+|||+
T Consensus       153 --------------------------------------------------------------~~~~~~~~~~~~~~aPE~  170 (283)
T cd07835         153 --------------------------------------------------------------VRTYTHEVVTLWYRAPEI  170 (283)
T ss_pred             --------------------------------------------------------------ccccCccccccCCCCCce
Confidence                                                                          000112246889999999


Q ss_pred             ecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC---------------------CC---------CCC
Q 042539          260 VRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---------------------TP---------EFV  308 (412)
Q Consensus       260 l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~---------------------~~---------~~~  308 (412)
                      +.+. .++.++|+|||||++|+|++|.+||.+.+....+.++...                     .+         ..+
T Consensus       171 ~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T cd07835         171 LLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVP  250 (283)
T ss_pred             eecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcC
Confidence            8765 4688999999999999999999999887765544433221                     00         013


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ..+..+.++|.+||+.||++||    ++++++.|+||
T Consensus       251 ~~~~~~~~li~~~l~~~P~~Rp----t~~~il~~~~~  283 (283)
T cd07835         251 NLDEDGLDLLSKMLVYDPAKRI----SAKAALQHPYF  283 (283)
T ss_pred             CCCHHHHHHHHHHhcCChhhCc----CHHHHhcCCCC
Confidence            4567899999999999999999    69999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=9.1e-42  Score=328.41  Aligned_cols=263  Identities=19%  Similarity=0.273  Sum_probs=213.5

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCC---CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccc
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAAD---PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLP   86 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~---~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv   86 (412)
                      +...+..++|.+.+.||+|+||.||+|++....   ......||+|++.....   ......+.+|+.+++.+ +|+||+
T Consensus         8 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~   84 (304)
T cd05101           8 PRWEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDAT---EKDLSDLVSEMEMMKMIGKHKNII   84 (304)
T ss_pred             CcccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccc---hHHHHHHHHHHHHHHhhccCCCch
Confidence            356788999999999999999999999864322   22334699999865421   23345677899999999 799999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCC
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND--------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLK  152 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~--------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlK  152 (412)
                      ++++++.....+|++|||+.+|+|..++.....              ..++..++..++.||+.||.|||++||+|||||
T Consensus        85 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlk  164 (304)
T cd05101          85 NLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLA  164 (304)
T ss_pred             heeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccc
Confidence            999999999999999999999999988765421              247778899999999999999999999999999


Q ss_pred             CCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          153 PENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       153 p~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                      |+|||++.++.+||+|||+++.......                                                    
T Consensus       165 p~Nili~~~~~~kl~D~g~~~~~~~~~~----------------------------------------------------  192 (304)
T cd05101         165 ARNVLVTENNVMKIADFGLARDVNNIDY----------------------------------------------------  192 (304)
T ss_pred             cceEEEcCCCcEEECCCccceecccccc----------------------------------------------------
Confidence            9999999999999999999975521100                                                    


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCC
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVG  309 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~  309 (412)
                               ........+++.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+.....  ....
T Consensus       193 ---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  263 (304)
T cd05101         193 ---------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN  263 (304)
T ss_pred             ---------cccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCC
Confidence                     001112346678999999998889999999999999999998 8999999888887776654332  2234


Q ss_pred             CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       310 ~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+..+.+||.+||..+|.+||    ++.++++
T Consensus       264 ~~~~~~~li~~cl~~~p~~Rp----s~~e~l~  291 (304)
T cd05101         264 CTNELYMMMRDCWHAIPSHRP----TFKQLVE  291 (304)
T ss_pred             CCHHHHHHHHHHcccChhhCC----CHHHHHH
Confidence            678999999999999999999    5777775

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=2.6e-42  Score=330.76  Aligned_cols=255  Identities=29%  Similarity=0.416  Sum_probs=211.2

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||.||++.+..++.    .||+|++.....    .....+.+|+.+++.++||||+++++.+...+
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~----~v~iK~~~~~~~----~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~   89 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQ----EVAIKQMNLQQQ----PKKELIINEILVMRENKHPNIVNYLDSYLVGD   89 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCC----EEEEEEeccccc----hHHHHHHHHHHHHhhcCCCCeeehhheeeeCC
Confidence            5899999999999999999998766544    399999864432    22355677999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ..|+|+||+.|++|..++...   .+++.++..++.|++.||.|||++|++||||||+||+++.++.+||+|||++....
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~  166 (293)
T cd06647          90 ELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  166 (293)
T ss_pred             cEEEEEecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccc
Confidence            999999999999998877542   48899999999999999999999999999999999999999999999999886442


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........|++.|+|
T Consensus       167 ~~---------------------------------------------------------------~~~~~~~~~~~~y~~  183 (293)
T cd06647         167 PE---------------------------------------------------------------QSKRSTMVGTPYWMA  183 (293)
T ss_pred             cc---------------------------------------------------------------ccccccccCChhhcC
Confidence            11                                                               011123468899999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc-CCCCC---CCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-KTPEF---VGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~-~~~~~---~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||.+.+..++.++|+|||||++|++++|+.||...+.......+.. ..+.+   ...+..++++|++||..+|.+||  
T Consensus       184 PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp--  261 (293)
T cd06647         184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG--  261 (293)
T ss_pred             chhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCc--
Confidence            9999888889999999999999999999999988765544333322 22222   23457899999999999999999  


Q ss_pred             CCChhhhhcCCCCCCCC
Q 042539          333 LRGACEIKEHVFFKGVR  349 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~~  349 (412)
                        ++.+++.|+||+...
T Consensus       262 --~~~~il~h~~~~~~~  276 (293)
T cd06647         262 --SAKELLQHPFLKIAK  276 (293)
T ss_pred             --CHHHHhcCHHHhcCc
Confidence              699999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=9.4e-42  Score=327.34  Aligned_cols=252  Identities=21%  Similarity=0.318  Sum_probs=204.4

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~   95 (412)
                      .++|++.+.||+|+||.||+|.++..+.  ...+++|.++...   .....+.+.+|+.++.++ +||||+++++++...
T Consensus         1 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~--~~~~~ik~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~   75 (297)
T cd05089           1 WEDIKFEDVIGEGNFGQVIRAMIKKDGL--KMNAAIKMLKEFA---SENDHRDFAGELEVLCKLGHHPNIINLLGACENR   75 (297)
T ss_pred             CccceeeeeecCCCcceEEEEEecCCCC--cceeEEEEccccC---CHHHHHHHHHHHHHHHhhcCCCchhheEEEEccC
Confidence            4789999999999999999998876542  2237888875322   122345677899999999 699999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      ..+|+||||+.+++|..++....              ...+++..++.++.|++.||+|||++||+||||||+|||++.+
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~  155 (297)
T cd05089          76 GYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGEN  155 (297)
T ss_pred             CcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCC
Confidence            99999999999999988876432              1248899999999999999999999999999999999999999


Q ss_pred             CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          162 GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       162 g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      +.+||+|||++......                                                               
T Consensus       156 ~~~kl~dfg~~~~~~~~---------------------------------------------------------------  172 (297)
T cd05089         156 LASKIADFGLSRGEEVY---------------------------------------------------------------  172 (297)
T ss_pred             CeEEECCcCCCccccce---------------------------------------------------------------
Confidence            99999999988532100                                                               


Q ss_pred             CCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHH
Q 042539          242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLI  318 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli  318 (412)
                       .......++..|+|||++.+..++.++|||||||++|||++ |..||.+.+..+....+....  ......+..+.+||
T Consensus       173 -~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  251 (297)
T cd05089         173 -VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEKPRNCDDEVYELM  251 (297)
T ss_pred             -eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHH
Confidence             00011123457999999998889999999999999999997 999999988877777665432  12234678999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhc
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+||..+|.+||    +++++++
T Consensus       252 ~~~l~~~p~~Rp----~~~~i~~  270 (297)
T cd05089         252 RQCWRDRPYERP----PFAQISV  270 (297)
T ss_pred             HHHcCCChhhCc----CHHHHHH
Confidence            999999999999    5777765

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=9.6e-42  Score=323.93  Aligned_cols=258  Identities=21%  Similarity=0.279  Sum_probs=208.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      -+..++|++++.||+|+||+||+|.+..++......||+|+++....   ......+.+|+.+++.++|+||+++++++.
T Consensus         3 ~l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~   79 (279)
T cd05109           3 ILKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTS---PKANKEILDEAYVMAGVGSPYVCRLLGICL   79 (279)
T ss_pred             ccchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCC---HHHHHHHHHHHHHHHhcCCCCCceEEEEEc
Confidence            35678999999999999999999998776655445689999865432   233456777999999999999999999987


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      . ...+++|+|+++|+|..++... .+.+++.++..++.|++.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        80 ~-~~~~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~  157 (279)
T cd05109          80 T-STVQLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (279)
T ss_pred             C-CCcEEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCcee
Confidence            5 4578999999999998877643 3458999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                             ........+++.
T Consensus       158 ~~~~~~~-------------------------------------------------------------~~~~~~~~~~~~  176 (279)
T cd05109         158 LLDIDET-------------------------------------------------------------EYHADGGKVPIK  176 (279)
T ss_pred             ecccccc-------------------------------------------------------------eeecCCCccchh
Confidence            5521100                                                             000111234678


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||.+.+..++.++|||||||++|||++ |..||...........+....  +.....+.++.++|.+||..||++||
T Consensus       177 y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  256 (279)
T cd05109         177 WMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRP  256 (279)
T ss_pred             hCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCc
Confidence            999999998889999999999999999998 999998877666554443322  23345678999999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          ++.+++.
T Consensus       257 ----~~~~l~~  263 (279)
T cd05109         257 ----RFRELVD  263 (279)
T ss_pred             ----CHHHHHH
Confidence                5788774

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=3.5e-42  Score=323.19  Aligned_cols=251  Identities=20%  Similarity=0.277  Sum_probs=210.5

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ....+|+++++||.|+||.||+|.++. +.    .+|+|++.+...    .....+.+|+++++.++|+||+++++++.+
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~-~~----~~~~k~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   73 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKN-RV----RVAIKILKSDDL----LKQQDFQKEVQALKRLRHKHLISLFAVCSV   73 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecC-CC----cEEEEeccccch----hhHHHHHHHHHHHhcCCCcchhheeeeEec
Confidence            345789999999999999999999876 33    399999976542    123456679999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .+..++||||+.+++|..++.......+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++..
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~  153 (261)
T cd05148          74 GEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARL  153 (261)
T ss_pred             CCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhh
Confidence            99999999999999999888765556689999999999999999999999999999999999999999999999999865


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                               .......++..|
T Consensus       154 ~~~~~---------------------------------------------------------------~~~~~~~~~~~~  170 (261)
T cd05148         154 IKEDV---------------------------------------------------------------YLSSDKKIPYKW  170 (261)
T ss_pred             cCCcc---------------------------------------------------------------ccccCCCCceEe
Confidence            42110                                                               001122356789


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||.+.+..++.++|||||||++|+|++ |+.||.+.+..+.+..+....  +.....++.+.++|.+||+.||.+|| 
T Consensus       171 ~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp-  249 (261)
T cd05148         171 TAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRP-  249 (261)
T ss_pred             cCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCc-
Confidence            99999988888999999999999999998 899999988887777776432  22345678999999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         ++.++++
T Consensus       250 ---t~~~l~~  256 (261)
T cd05148         250 ---SFKALRE  256 (261)
T ss_pred             ---CHHHHHH
Confidence               5777664

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=8.4e-42  Score=324.79  Aligned_cols=258  Identities=19%  Similarity=0.284  Sum_probs=209.7

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +..++|.+.++||+|+||.||+|..... ....+..+|+|.+....    ......+.+|+++++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   77 (280)
T cd05092           2 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----ESARQDFQREAELLTVLQHQHIVRFYGVCT   77 (280)
T ss_pred             CChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC----HHHHHHHHHHHHHHhcCCCCCCceEEEEEe
Confidence            5678999999999999999999976432 22234458999886543    233456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCC-------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQND-------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ  160 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~-------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~  160 (412)
                      ++...+++|||+.+++|..++.....             ..+++..+..++.|++.||+|||++||+||||||+|||++.
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~  157 (280)
T cd05092          78 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQ  157 (280)
T ss_pred             cCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcC
Confidence            99999999999999999888765432             34889999999999999999999999999999999999999


Q ss_pred             CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccC
Q 042539          161 SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD  240 (412)
Q Consensus       161 ~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
                      ++.+||+|||+++.......                                                            
T Consensus       158 ~~~~kL~dfg~~~~~~~~~~------------------------------------------------------------  177 (280)
T cd05092         158 GLVVKIGDFGMSRDIYSTDY------------------------------------------------------------  177 (280)
T ss_pred             CCCEEECCCCceeEcCCCce------------------------------------------------------------
Confidence            99999999999865421100                                                            


Q ss_pred             CCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHH
Q 042539          241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDL  317 (412)
Q Consensus       241 ~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dl  317 (412)
                       ........+++.|+|||.+.+..++.++|||||||++|+|++ |.+||......+....+.....  .....++.+.+|
T Consensus       178 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (280)
T cd05092         178 -YRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRTCPPEVYAI  256 (280)
T ss_pred             -eecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCccCCCCCCCCHHHHHH
Confidence             000122345788999999999889999999999999999998 9999988777776666655432  223467899999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhc
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |.+||..||.+||    ++.++++
T Consensus       257 i~~cl~~~P~~Rp----~~~~l~~  276 (280)
T cd05092         257 MQGCWQREPQQRM----VIKDIHS  276 (280)
T ss_pred             HHHHccCChhhCC----CHHHHHH
Confidence            9999999999999    5777764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=6.2e-42  Score=325.05  Aligned_cols=253  Identities=27%  Similarity=0.419  Sum_probs=211.3

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      -|++++.||+|+||.||++.+...+.    .||+|++.....   ......+.+|+.+++.++|+||+++++++..++.+
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~----~~aiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   77 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQK----VVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKL   77 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCc----EEEEEEeccccc---hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeE
Confidence            47889999999999999998876443    499999865432   22345677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.|++|..++..   ..+++..+..++.|++.||.|||++|++|+||||+||+++.+|.++|+|||++..+...
T Consensus        78 ~lv~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06641          78 WIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  154 (277)
T ss_pred             EEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccc
Confidence            999999999999877643   34899999999999999999999999999999999999999999999999998654211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........|+..|+|||
T Consensus       155 ---------------------------------------------------------------~~~~~~~~~~~~y~~PE  171 (277)
T cd06641         155 ---------------------------------------------------------------QIKRNTFVGTPFWMAPE  171 (277)
T ss_pred             ---------------------------------------------------------------hhhhccccCCccccChh
Confidence                                                                           01112346888999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-C-CCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-F-VGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-~-~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      .+.+...+.++|+|||||++|+|++|..||...+.......+...... . ...+.++.++|.+||..+|.+||    ++
T Consensus       172 ~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp----~~  247 (277)
T cd06641         172 VIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRP----TA  247 (277)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCc----CH
Confidence            998888889999999999999999999999887766655554433222 2 23568899999999999999999    69


Q ss_pred             hhhhcCCCCCCC
Q 042539          337 CEIKEHVFFKGV  348 (412)
Q Consensus       337 ~e~l~h~ff~~~  348 (412)
                      .++++|+||...
T Consensus       248 ~~~l~~~~~~~~  259 (277)
T cd06641         248 KELLKHKFIVRF  259 (277)
T ss_pred             HHHHhCHHHhhh
Confidence            999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=8.1e-42  Score=320.96  Aligned_cols=252  Identities=21%  Similarity=0.294  Sum_probs=206.2

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++..++|++++.||+|+||.||+|.+...     ..||+|.+......     ...+.+|+.++++++|+||+++++++
T Consensus         1 ~~~~~~~~~~~~~ig~g~~~~v~~~~~~~~-----~~~~~k~~~~~~~~-----~~~~~~E~~~l~~l~~~~i~~~~~~~   70 (260)
T cd05070           1 WEIPRESLQLIKKLGNGQFGEVWMGTWNGN-----TKVAVKTLKPGTMS-----PESFLEEAQIMKKLRHDKLVQLYAVV   70 (260)
T ss_pred             CCCchHHhhhhheeccccCceEEEEEecCC-----ceeEEEEecCCCCC-----HHHHHHHHHHHHhcCCCceEEEEeEE
Confidence            356788999999999999999999977532     23899998764432     23467799999999999999999988


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      . ....|++|||+.|++|..++.......+++..++.++.|++.||.|||++||+||||||+||+++.++.++|+|||++
T Consensus        71 ~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~  149 (260)
T cd05070          71 S-EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLA  149 (260)
T ss_pred             C-CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceee
Confidence            5 456899999999999998887655556899999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      ..+....                                                              ........++.
T Consensus       150 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  167 (260)
T cd05070         150 RLIEDNE--------------------------------------------------------------YTARQGAKFPI  167 (260)
T ss_pred             eeccCcc--------------------------------------------------------------cccccCCCCCc
Confidence            7542110                                                              00011223566


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||.+.+..++.++|+|||||++|+|++ |.+||.+.+..+....+....  +.....+..+.+||.+||.++|.+|
T Consensus       168 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  247 (260)
T cd05070         168 KWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEER  247 (260)
T ss_pred             cccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccC
Confidence            8999999988888999999999999999999 999999988777777665432  2233457889999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    ++.++.+
T Consensus       248 p----t~~~l~~  255 (260)
T cd05070         248 P----TFEYLQS  255 (260)
T ss_pred             c----CHHHHHH
Confidence            9    5676653

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.8e-42  Score=321.88  Aligned_cols=254  Identities=21%  Similarity=0.295  Sum_probs=203.8

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe--
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF--   97 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~--   97 (412)
                      |++.+.||+|+||.||+|....... +...||+|.++.....  ......+.+|+.+++.++|+||+++++++.....  
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   77 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDG-SQLKVAVKTMKLDIHT--YSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQ   77 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCC-CcceEEEEEeccCcCC--HHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccc
Confidence            6789999999999999998754332 3455999998754332  2234567789999999999999999998765443  


Q ss_pred             ----EEEEeeccCCCCchhHHHhhC----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           98 ----LAWAVPYCPGGDLNVLRYKQN----DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        98 ----~~lv~e~~~gg~L~~~~~~~~----~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                          .+++|||+.+|+|..++....    ...+++..+..++.|++.||.|||+.||+||||||+||++++++.+||+||
T Consensus        78 ~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          78 KIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             cCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCc
Confidence                899999999999987765432    235899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.......+                                                             .......
T Consensus       158 g~~~~~~~~~~~-------------------------------------------------------------~~~~~~~  176 (273)
T cd05035         158 GLSKKIYSGDYY-------------------------------------------------------------RQGRIAK  176 (273)
T ss_pred             cceeeccccccc-------------------------------------------------------------ccccccc
Confidence            998755211100                                                             0011223


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      ++..|+|||.+.+..++.++|||||||++|||++ |.+||.+.+..+.+..+....  ......+..+.++|.+||+.||
T Consensus       177 ~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  256 (273)
T cd05035         177 MPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADP  256 (273)
T ss_pred             CCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCCh
Confidence            4678999999988889999999999999999998 999999988777776665432  1223467899999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||    ++.++++
T Consensus       257 ~~Rp----~~~e~~~  267 (273)
T cd05035         257 KDRP----TFTKLRE  267 (273)
T ss_pred             hhCc----CHHHHHH
Confidence            9999    5777775

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.5e-41  Score=324.18  Aligned_cols=255  Identities=27%  Similarity=0.475  Sum_probs=206.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--   95 (412)
                      ++|..++.||.|++|.||+|.+..++    +.||+|.+.....   ......+.+|+++++.++|+||+++++++.+.  
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~----~~~~~k~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   73 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTG----MIFALKTITTDPN---PDLQKQILRELEINKSCKSPYIVKYYGAFLDESS   73 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCC----eEEEEEEEecCCc---hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCC
Confidence            57999999999999999999987644    4499999875432   23456677899999999999999999988654  


Q ss_pred             CeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      ..+|+||||+.|++|.+++..  .....+++..+..++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++.
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~  153 (287)
T cd06621          74 SSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSG  153 (287)
T ss_pred             CeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccc
Confidence            479999999999999876543  223458999999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                                 ......++..
T Consensus       154 ~~~~~-----------------------------------------------------------------~~~~~~~~~~  168 (287)
T cd06621         154 ELVNS-----------------------------------------------------------------LAGTFTGTSF  168 (287)
T ss_pred             ccccc-----------------------------------------------------------------ccccccCCcc
Confidence            43210                                                                 0113357888


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCC-CCCC-------CCChHHHHHHHH
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK-----NRKETFRNVLMKT-PEFV-------GQRTALTDLIQR  320 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~-----~~~~~~~~i~~~~-~~~~-------~~~~~~~dli~~  320 (412)
                      |+|||.+.+..++.++|+|||||++|+|++|..||...     ...+....+.... +...       ..++.+.+||.+
T Consensus       169 y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  248 (287)
T cd06621         169 YMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQ  248 (287)
T ss_pred             ccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHH
Confidence            99999999888999999999999999999999999875     2233333333311 1111       234689999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      ||..||.+||    ++.|++.|+||+..
T Consensus       249 ~l~~~p~~Rp----t~~eil~~~~~~~~  272 (287)
T cd06621         249 CLEKDPTRRP----TPWDMLEHPWIKAQ  272 (287)
T ss_pred             HcCCCcccCC----CHHHHHhCcccccc
Confidence            9999999999    69999999999754

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1.7e-41  Score=316.54  Aligned_cols=254  Identities=31%  Similarity=0.514  Sum_probs=216.0

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|.+.+.||+|+||.||++.+..++    ..||+|++......  ......+.+|+++++.++|+|++++++.+..+...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~----~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~   74 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDG----KLYVLKEIDLSNMS--EKEREDALNEVKILKKLNHPNIIKYYESFEEKGKL   74 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCC----cEEEEEEeecccCC--hHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEE
Confidence            6899999999999999999987644    44999999765432  23455677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           99 AWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ++|+|+++|++|..++....  ...+++..+..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++....
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  154 (258)
T cd08215          75 CIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLS  154 (258)
T ss_pred             EEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecc
Confidence            99999999999988776543  3569999999999999999999999999999999999999999999999999886542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               .......+|++.|+|
T Consensus       155 ~~---------------------------------------------------------------~~~~~~~~~~~~y~~  171 (258)
T cd08215         155 ST---------------------------------------------------------------VDLAKTVVGTPYYLS  171 (258)
T ss_pred             cC---------------------------------------------------------------cceecceeeeecccC
Confidence            11                                                               012234578999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCCC-CCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEFV-GQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ||.+.+..++.++|+||+|+++|+|++|..||...+..+......... ...+ ..+.++.++|.+||..+|++||    
T Consensus       172 pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp----  247 (258)
T cd08215         172 PELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERP----  247 (258)
T ss_pred             hhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCc----
Confidence            999988889999999999999999999999998887777666665433 2222 4678999999999999999999    


Q ss_pred             ChhhhhcCCCC
Q 042539          335 GACEIKEHVFF  345 (412)
Q Consensus       335 ~~~e~l~h~ff  345 (412)
                      ++.++++||||
T Consensus       248 ~~~~ll~~~~~  258 (258)
T cd08215         248 SIAQILQSPFI  258 (258)
T ss_pred             CHHHHhcCCCC
Confidence            79999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=1.5e-41  Score=324.91  Aligned_cols=258  Identities=21%  Similarity=0.295  Sum_probs=210.4

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +...+|.+.+.||+|+||.||+|++.... ......+++|.+.....    ...+.+.+|+.+++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   77 (291)
T cd05094           2 IKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL----AARKDFQREAELLTNLQHEHIVKFYGVCG   77 (291)
T ss_pred             CchHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH----HHHHHHHHHHHHHhcCCCCCcceEEEEEc
Confidence            56788999999999999999999865432 22444589998865432    23355677999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR  159 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~  159 (412)
                      .++..++||||+.|++|.+++....              .+.+++..++.++.||+.||+|||++||+||||||+|||++
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~  157 (291)
T cd05094          78 DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVG  157 (291)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEc
Confidence            9999999999999999998876532              23488999999999999999999999999999999999999


Q ss_pred             cCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc
Q 042539          160 QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF  239 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      .++.++|+|||+++......                                                            
T Consensus       158 ~~~~~~l~dfg~a~~~~~~~------------------------------------------------------------  177 (291)
T cd05094         158 ANLLVKIGDFGMSRDVYSTD------------------------------------------------------------  177 (291)
T ss_pred             cCCcEEECCCCcccccCCCc------------------------------------------------------------
Confidence            99999999999986542110                                                            


Q ss_pred             CCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHH
Q 042539          240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTD  316 (412)
Q Consensus       240 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~d  316 (412)
                       .........|+..|+|||.+.+..++.++|||||||++|+|++ |..||...+..+....+......  ....+..+.+
T Consensus       178 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (291)
T cd05094         178 -YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYD  256 (291)
T ss_pred             -eeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCCCCCccCCHHHHH
Confidence             0011123457889999999999889999999999999999998 99999888877766665543322  2345788999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhc
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +|.+||+.||.+||    ++.++++
T Consensus       257 li~~~l~~~P~~Rp----t~~~v~~  277 (291)
T cd05094         257 IMLGCWQREPQQRL----NIKEIYK  277 (291)
T ss_pred             HHHHHcccChhhCc----CHHHHHH
Confidence            99999999999999    5777764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.4e-42  Score=319.94  Aligned_cols=249  Identities=23%  Similarity=0.298  Sum_probs=204.9

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ...+|++.+.||+|+||.||+++++. +    ..+|+|++.+....     ...+.+|+.+++.++|+||+++++++...
T Consensus         2 ~~~~~~~~~~lg~G~~~~v~~~~~~~-~----~~~~iK~~~~~~~~-----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   71 (256)
T cd05059           2 DPSELTFLKELGSGQFGVVHLGKWRG-K----IDVAIKMIREGAMS-----EDDFIEEAKVMMKLSHPNLVQLYGVCTKQ   71 (256)
T ss_pred             ChHHcchhhhhccCCCceEEEeEecC-C----ccEEEEEeccCCCC-----HHHHHHHHHHHHhCCCCCEEEEEEEEcCC
Confidence            45789999999999999999998753 2    23899998654432     22455699999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +..|+||||+.|++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.+|.+||+|||+++..
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~  150 (256)
T cd05059          72 RPIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYV  150 (256)
T ss_pred             CceEEEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceec
Confidence            99999999999999988876543 35899999999999999999999999999999999999999999999999998754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      .+...                                                              .......++..|+
T Consensus       151 ~~~~~--------------------------------------------------------------~~~~~~~~~~~y~  168 (256)
T cd05059         151 LDDQY--------------------------------------------------------------TSSQGTKFPVKWA  168 (256)
T ss_pred             ccccc--------------------------------------------------------------cccCCCCCCcccc
Confidence            21100                                                              0000112345799


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |||.+.+..++.++|+|||||++|+|++ |.+||.+.+..+....+....  ......+.++.+++.+||..+|++||  
T Consensus       169 ~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp--  246 (256)
T cd05059         169 PPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRP--  246 (256)
T ss_pred             CHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCc--
Confidence            9999998889999999999999999998 899999887777766665432  22334678999999999999999999  


Q ss_pred             CCChhhhhc
Q 042539          333 LRGACEIKE  341 (412)
Q Consensus       333 ~~~~~e~l~  341 (412)
                        ++.++++
T Consensus       247 --t~~~~l~  253 (256)
T cd05059         247 --AFKKLLS  253 (256)
T ss_pred             --CHHHHHH
Confidence              6888875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-42  Score=324.76  Aligned_cols=254  Identities=26%  Similarity=0.468  Sum_probs=209.0

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC---CCccceeeeeEEeC
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---HPFLPKLLGSLETD   95 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~---hpnIv~l~~~~~~~   95 (412)
                      .|++++.||+|+||.||+|.+..++.    .||+|+++....   ......+.+|+.+++.+.   |+||+++++++..+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~----~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~   74 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGR----VVALKIINLDTP---DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKG   74 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCc----EEEEEEecCCCC---chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeC
Confidence            58899999999999999999876544    499999865432   223445667999999997   99999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ...|+||||+.|++|..++..   +.+++..+..++.|++.||.|||+.||+|+||+|+||+++.+|.++|+|||++...
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~  151 (277)
T cd06917          75 PRLWIIMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALL  151 (277)
T ss_pred             CEEEEEEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeec
Confidence            999999999999999877644   25899999999999999999999999999999999999999999999999998754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                               ........|+..|+
T Consensus       152 ~~~---------------------------------------------------------------~~~~~~~~~~~~y~  168 (277)
T cd06917         152 NQN---------------------------------------------------------------SSKRSTFVGTPYWM  168 (277)
T ss_pred             CCC---------------------------------------------------------------ccccccccCCccee
Confidence            211                                                               01122346889999


Q ss_pred             cceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCCC--CCChHHHHHHHHhhhhCCCccCC
Q 042539          256 SPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEFV--GQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       256 APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~~--~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |||.+.+ ..++.++|+|||||++|+|++|..||.+.+.......+.... +.+.  ..+.++.++|.+||+.||.+|| 
T Consensus       169 aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~-  247 (277)
T cd06917         169 APEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERL-  247 (277)
T ss_pred             CHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCc-
Confidence            9999875 456889999999999999999999998876655443332222 2222  2568899999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCCC
Q 042539          332 YLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~~  349 (412)
                         ++.+++.|+||+...
T Consensus       248 ---~~~~il~~~~~~~~~  262 (277)
T cd06917         248 ---SAEELLKSKWIKAHS  262 (277)
T ss_pred             ---CHHHHhhChHhhccc
Confidence               699999999997644

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.6e-41  Score=328.50  Aligned_cols=263  Identities=19%  Similarity=0.260  Sum_probs=212.1

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccc
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLP   86 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv   86 (412)
                      ....+..++|.+.+.||+|+||.||+|++.....   .....||+|.++....   ......+.+|+.+++++ +||||+
T Consensus         5 ~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv   81 (314)
T cd05099           5 PKWEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT---DKDLADLISEMELMKLIGKHKNII   81 (314)
T ss_pred             ccccccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC---hHHHHHHHHHHHHHHhccCCCCee
Confidence            4557788999999999999999999998754322   2344599999865422   22345577799999999 599999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCC
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLK  152 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlK  152 (412)
                      ++++++..+..+|++|||+.+|+|..++....              ...++..++..++.|++.||.|||++||+|||||
T Consensus        82 ~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlk  161 (314)
T cd05099          82 NLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLA  161 (314)
T ss_pred             eEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecccc
Confidence            99999999999999999999999998876532              1348889999999999999999999999999999


Q ss_pred             CCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          153 PENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       153 p~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                      |+|||++.++.+||+|||+++.......                                                    
T Consensus       162 p~Nill~~~~~~kL~Dfg~~~~~~~~~~----------------------------------------------------  189 (314)
T cd05099         162 ARNVLVTEDNVMKIADFGLARGVHDIDY----------------------------------------------------  189 (314)
T ss_pred             ceeEEEcCCCcEEEcccccccccccccc----------------------------------------------------
Confidence            9999999999999999999975421100                                                    


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC-C-CCC
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP-E-FVG  309 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~-~~~  309 (412)
                               ........++..|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+.+..+..... . ...
T Consensus       190 ---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  260 (314)
T cd05099         190 ---------YKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHRMDKPSN  260 (314)
T ss_pred             ---------ccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCC
Confidence                     000111234567999999998889999999999999999998 9999999888777776655432 1 234


Q ss_pred             CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       310 ~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+.+++++|.+||..||++||    ++.++++
T Consensus       261 ~~~~l~~li~~cl~~~p~~Rp----s~~~ll~  288 (314)
T cd05099         261 CTHELYMLMRECWHAVPTQRP----TFKQLVE  288 (314)
T ss_pred             CCHHHHHHHHHHcCCCcccCc----CHHHHHH
Confidence            567899999999999999999    5777775

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=7e-42  Score=335.09  Aligned_cols=257  Identities=25%  Similarity=0.361  Sum_probs=202.6

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--   95 (412)
                      .+|.+.+.||.|+||.||+|.++.++.    .||+|.+.....    ...+.+.+|+++++.++||||+++++++...  
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~----~v~iK~i~~~~~----~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~   76 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDK----RVAVKKIVLTDP----QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGS   76 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCc----EEEEEEEecCCC----chHHHHHHHHHHHHhcCCCcchhhHhhhccccc
Confidence            689999999999999999999887554    499999866543    2345566799999999999999999876543  


Q ss_pred             ------------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CC
Q 042539           96 ------------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SG  162 (412)
Q Consensus        96 ------------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g  162 (412)
                                  ...|+||||+. ++|..++..   +.+++..++.++.||+.||.|||++||+||||||+||+++. ++
T Consensus        77 ~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~  152 (342)
T cd07854          77 DLTEDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDL  152 (342)
T ss_pred             ccccccccccccceEEEEeeccc-ccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCc
Confidence                        36899999996 577665532   35899999999999999999999999999999999999985 45


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+++.......                                                            ..
T Consensus       153 ~~kl~dfg~~~~~~~~~~------------------------------------------------------------~~  172 (342)
T cd07854         153 VLKIGDFGLARIVDPHYS------------------------------------------------------------HK  172 (342)
T ss_pred             eEEECCcccceecCCccc------------------------------------------------------------cc
Confidence            789999999865421000                                                            00


Q ss_pred             CCCcccccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC----------------
Q 042539          243 ERSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP----------------  305 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~----------------  305 (412)
                      .......|+..|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+....+....+                
T Consensus       173 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
T cd07854         173 GYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPS  252 (342)
T ss_pred             cccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhh
Confidence            01112357889999998755 4578899999999999999999999988766555444332110                


Q ss_pred             ---------------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          306 ---------------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       306 ---------------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                                     ..+..+.++.+||.+||+.||.+||    ++.+++.|+||+...+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~ell~h~~~~~~~~  308 (342)
T cd07854         253 FVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRL----TAEEALMHPYMSCYSC  308 (342)
T ss_pred             hhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhcc----CHHHHhCCCccccccC
Confidence                           0124567899999999999999999    6999999999986543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-41  Score=334.04  Aligned_cols=252  Identities=24%  Similarity=0.416  Sum_probs=203.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .++|.+++.||+|+||.||++.+..++    ..||+|++++....  ......+.+|+.++++++|+||+++++++... 
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~~~~----~~vaiK~~~~~~~~--~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~   89 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDTKTG----LRVAVKKLSRPFQS--IIHAKRTYRELRLLKHMKHENVIGLLDVFTPAR   89 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEcCCC----eEEEEEEecCcchh--hHHHHHHHHHHHHHHHcCCCcccceeeeeeecc
Confidence            488999999999999999999887644    44999999764321  22345567799999999999999999988643 


Q ss_pred             -----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           96 -----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        96 -----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                           ..+|++++++ |++|..++..   ..+++..++.++.|++.||+|||++||+||||||+||+++.+|.+||+|||
T Consensus        90 ~~~~~~~~~lv~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg  165 (345)
T cd07877          90 SLEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFG  165 (345)
T ss_pred             cccccccEEEEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEeccc
Confidence                 3478888887 7888766543   248999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++....                                                                  ......|
T Consensus       166 ~~~~~~~------------------------------------------------------------------~~~~~~~  179 (345)
T cd07877         166 LARHTDD------------------------------------------------------------------EMTGYVA  179 (345)
T ss_pred             ccccccc------------------------------------------------------------------ccccccc
Confidence            8864310                                                                  1123467


Q ss_pred             CCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------------------CC
Q 042539          251 TEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----------------------PE  306 (412)
Q Consensus       251 t~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----------------------~~  306 (412)
                      |..|+|||++.+ ..++.++|||||||++|+|++|++||.+.+....+..+....                       +.
T Consensus       180 ~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (345)
T cd07877         180 TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQ  259 (345)
T ss_pred             CCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcc
Confidence            889999999876 467889999999999999999999998876655443332110                       00


Q ss_pred             ---------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          307 ---------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       307 ---------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                               ....++++.+||.+||+.||.+|+    ++.+++.||||.+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~----t~~e~l~h~~f~~~  306 (345)
T cd07877         260 MPKMNFANVFIGANPLAVDLLEKMLVLDSDKRI----TAAQALAHAYFAQY  306 (345)
T ss_pred             cCCcchhhhcCCCCHHHHHHHHHHcCCChhhcC----CHHHHhcChhhhhc
Confidence                     113467899999999999999999    69999999999863

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-43  Score=345.39  Aligned_cols=254  Identities=23%  Similarity=0.327  Sum_probs=210.5

Q ss_pred             CCCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccc
Q 042539            7 PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLP   86 (412)
Q Consensus         7 ~~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv   86 (412)
                      .-....+++..+++++...||+|+||+||+++|.+.       ||||+++......  +..+.++.|+.++++-+|.||+
T Consensus       381 s~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whGd-------VAVK~Lnv~~pt~--~qlqaFKnEVa~lkkTRH~NIl  451 (678)
T KOG0193|consen  381 SDSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHGD-------VAVKLLNVDDPTP--EQLQAFKNEVAVLKKTRHENIL  451 (678)
T ss_pred             CccccccccCHHHhhccceeccccccceeecccccc-------eEEEEEecCCCCH--HHHHHHHHHHHHHhhcchhhhe
Confidence            334567899999999999999999999999999764       9999998776533  3678889999999999999999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      -+.+++..... .||+-+|+|.+|+.+++... ..|+....+.|+.||+.|+.|||.++|||||||..||++.++++|||
T Consensus       452 LFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkI  529 (678)
T KOG0193|consen  452 LFMGACMNPPL-AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKI  529 (678)
T ss_pred             eeehhhcCCce-eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEE
Confidence            99999988777 99999999999998888655 46999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +||||+..-.                                .|                             .......
T Consensus       530 gDFGLatvk~--------------------------------~w-----------------------------~g~~q~~  548 (678)
T KOG0193|consen  530 GDFGLATVKT--------------------------------RW-----------------------------SGEQQLE  548 (678)
T ss_pred             ecccceeeee--------------------------------ee-----------------------------ccccccC
Confidence            9999996421                                11                             0111122


Q ss_pred             ccccCCCCccceeecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CC----CCCCChHHHHH
Q 042539          247 SFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PE----FVGQRTALTDL  317 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~----~~~~~~~~~dl  317 (412)
                      .-.|...|||||++..   .+|++.+|||||||++|||++|..||...+...++-.+-.+.  +.    ..++++++++|
T Consensus       549 qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~L  628 (678)
T KOG0193|consen  549 QPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRL  628 (678)
T ss_pred             CCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHH
Confidence            3347788999999874   468999999999999999999999999766555443332221  11    23456799999


Q ss_pred             HHHhhhhCCCccCCC
Q 042539          318 IQRLLEKDPVKRLGY  332 (412)
Q Consensus       318 i~~~L~~dP~~R~~~  332 (412)
                      +..||.+++++||.+
T Consensus       629 l~~C~~~~~~eRP~F  643 (678)
T KOG0193|consen  629 LSDCWKFDREERPLF  643 (678)
T ss_pred             HHHHHhcCcccCccH
Confidence            999999999999964

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=5.1e-42  Score=333.79  Aligned_cols=260  Identities=24%  Similarity=0.358  Sum_probs=212.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC--
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE--   96 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~--   96 (412)
                      +|++.+.||.|+||.||+|++..++.    .||||++.+...  .....+.+.+|+.+++.++|+||+++++++....  
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~----~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGR----KVAIKKISNVFD--DLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPE   74 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCc----EEEEEeeccccc--cchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcc
Confidence            68999999999999999999876544    499999865431  2334566778999999999999999999998775  


Q ss_pred             ---eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           97 ---FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        97 ---~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                         .+|++|||+. ++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.++|+|||++.
T Consensus        75 ~~~~~~lv~e~~~-~~l~~~l~~~--~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~  151 (330)
T cd07834          75 DFNDVYIVTELME-TDLHKVIKSP--QPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLAR  151 (330)
T ss_pred             cccceEEEecchh-hhHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceE
Confidence               7999999997 4776666543  369999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                            .........+|..
T Consensus       152 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~~  171 (330)
T cd07834         152 GVDPDED------------------------------------------------------------EKGFLTEYVVTRW  171 (330)
T ss_pred             eeccccc------------------------------------------------------------ccccccccccccC
Confidence            6421100                                                            0011233468899


Q ss_pred             CccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---------------------------
Q 042539          254 YVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP---------------------------  305 (412)
Q Consensus       254 Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~---------------------------  305 (412)
                      |+|||++.+. .++.++|+|||||++|+|++|.+||.+.+..+.+..+.....                           
T Consensus       172 y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (330)
T cd07834         172 YRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPK  251 (330)
T ss_pred             cCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCc
Confidence            9999999988 789999999999999999999999999887766655543110                           


Q ss_pred             -----CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 -----EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 -----~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                           ..+..+..+.+||.+||+.+|.+||    ++++++.||||+++.-.
T Consensus       252 ~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp----t~~~ll~~~~~~~~~~~  298 (330)
T cd07834         252 KPLSKLFPGASPEAIDLLEKMLVFDPKKRI----TADEALAHPYLAQLHDP  298 (330)
T ss_pred             chhHHhcccCCHHHHHHHHHHccCChhhCC----CHHHHHhCccHHhhccc
Confidence                 0123567899999999999999999    69999999999976543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.4e-41  Score=318.50  Aligned_cols=246  Identities=23%  Similarity=0.347  Sum_probs=204.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE-
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL-   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~-   92 (412)
                      .+.+++|++.+.||+|+||.||++...+      ..||+|.++...      ..+.+.+|+.+++.++|+||+++++++ 
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~------~~~~~k~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~   69 (256)
T cd05082           2 ALNMKELKLLQTIGKGEFGDVMLGDYRG------NKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIV   69 (256)
T ss_pred             CccHHhCeeeeeecccCCCeEEEEEEcC------CcEEEEEeCCCc------hHHHHHHHHHHHHhCCCCCeeeEEEEEE
Confidence            4678899999999999999999987642      238999985432      234567799999999999999999975 


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ..++..|++|||+.+++|..++.......+++..+..++.|++.||+|||++|++||||||+||+++.+|.+||+|||++
T Consensus        70 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~  149 (256)
T cd05082          70 EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLT  149 (256)
T ss_pred             cCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccc
Confidence            45568999999999999998877655556889999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.....                                                                  .....++.
T Consensus       150 ~~~~~~------------------------------------------------------------------~~~~~~~~  163 (256)
T cd05082         150 KEASST------------------------------------------------------------------QDTGKLPV  163 (256)
T ss_pred             eecccc------------------------------------------------------------------CCCCccce
Confidence            643110                                                                  01223456


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||++.+..++.++|||||||++|+|++ |+.||...+..+....+.....  .....++.+.++|.+||..+|++|
T Consensus       164 ~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  243 (256)
T cd05082         164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATR  243 (256)
T ss_pred             eecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhC
Confidence            7999999998889999999999999999997 9999998877776666654322  123467899999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    ++.++++
T Consensus       244 p----t~~~l~~  251 (256)
T cd05082         244 P----SFLQLRE  251 (256)
T ss_pred             c----CHHHHHH
Confidence            9    5777764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5e-43  Score=345.93  Aligned_cols=251  Identities=24%  Similarity=0.386  Sum_probs=217.2

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe--E
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF--L   98 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~--~   98 (412)
                      +.-.+||+|+|-+||+|.|..++..    ||.-.++...+.......+++..|+.+|+.|+|+|||++|++|.+..+  +
T Consensus        43 k~~evLGrGafKtVYka~De~~giE----VAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~i  118 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIE----VAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTI  118 (632)
T ss_pred             ehhhhcccccceeeeeccccccchh----hHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCcee
Confidence            4557899999999999998776555    888888777777777778999999999999999999999999987654  8


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccC-CCEEEccccccchh
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQS-GHVTLTDFDLSRNL  175 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~-g~vkL~DFGla~~~  175 (412)
                      .+|+|++.+|+|..|+.....  .+...++.|++||+.||.|||++.  |||||||.+||+|+.+ |.|||+|+|||...
T Consensus       119 n~iTEL~TSGtLr~Y~kk~~~--vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~  196 (632)
T KOG0584|consen  119 NFITELFTSGTLREYRKKHRR--VNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLL  196 (632)
T ss_pred             eeeeecccCCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHh
Confidence            999999999999888776654  899999999999999999999997  9999999999999876 99999999999865


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      .                                                                 .....+++|||.||
T Consensus       197 r-----------------------------------------------------------------~s~aksvIGTPEFM  211 (632)
T KOG0584|consen  197 R-----------------------------------------------------------------KSHAKSVIGTPEFM  211 (632)
T ss_pred             h-----------------------------------------------------------------ccccceeccCcccc
Confidence            2                                                                 22334579999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcCCCC--CCC-CChHHHHHHHHhhhhCCCccCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMKTPE--FVG-QRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~~~~--~~~-~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |||... ..|+..+||||||+++.||+|+..||.. .+..++++++..+..+  +-. -.+++++||.+||.. .++|+ 
T Consensus       212 APEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~-  288 (632)
T KOG0584|consen  212 APEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERL-  288 (632)
T ss_pred             ChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhcc-
Confidence            999998 7799999999999999999999999977 5666778887765532  112 258999999999999 89999 


Q ss_pred             CCCChhhhhcCCCCCCC
Q 042539          332 YLRGACEIKEHVFFKGV  348 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~  348 (412)
                         ++.|+|+|+||..-
T Consensus       289 ---sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  289 ---SAKELLKDPFFDED  302 (632)
T ss_pred             ---CHHHHhhChhhccc
Confidence               69999999999874

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.5e-41  Score=319.02  Aligned_cols=256  Identities=28%  Similarity=0.435  Sum_probs=204.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..+++.....||+|+||.||++.+..++    ..||+|.+.....    ...+.+.+|+.+++.++|+||+++++++.
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~----~~v~~k~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   75 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQ----VRIAIKEIPERDS----RYVQPLHEEIALHSYLKHRNIVQYLGSDS   75 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCC----cEEEEEEecCCCH----HHHHHHHHHHHHHHhcCCCCeeeeeeeec
Confidence            455566666789999999999999887644    4499999865432    23456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCC--CHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CCCEEEcccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVF--SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFD  170 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l--~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g~vkL~DFG  170 (412)
                      .++..++|+||+.|++|..++.... ..+  ++..+..++.||+.||.|||++||+||||||+||+++. .+.++|+|||
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg  154 (268)
T cd06624          76 ENGFFKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFG  154 (268)
T ss_pred             cCCEEEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecch
Confidence            9999999999999999988876542 234  78899999999999999999999999999999999986 6799999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      ++..+...                                                               ........|
T Consensus       155 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~  171 (268)
T cd06624         155 TSKRLAGI---------------------------------------------------------------NPCTETFTG  171 (268)
T ss_pred             hheecccC---------------------------------------------------------------CCccccCCC
Confidence            88654210                                                               001122357


Q ss_pred             CCCCccceeecCCC--CCchhhHHHHHHHHHHHhhCCCCCCCCCHHH--HHHHH-hcCCCCCC-CCChHHHHHHHHhhhh
Q 042539          251 TEEYVSPEVVRGDG--HEFAVDWWALGILTYEMLYGTTPFRGKNRKE--TFRNV-LMKTPEFV-GQRTALTDLIQRLLEK  324 (412)
Q Consensus       251 t~~Y~APE~l~~~~--~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~--~~~~i-~~~~~~~~-~~~~~~~dli~~~L~~  324 (412)
                      ++.|+|||.+.+..  ++.++|+|||||++|+|++|++||.......  ..... ....+..+ ..++++.+||.+||..
T Consensus       172 ~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  251 (268)
T cd06624         172 TLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEP  251 (268)
T ss_pred             CccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCC
Confidence            88999999987643  7889999999999999999999997643221  11111 12222222 4568899999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCC
Q 042539          325 DPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      +|.+||    ++.+++.||||
T Consensus       252 ~p~~Rp----t~~~ll~~~~~  268 (268)
T cd06624         252 DPDKRA----SAHDLLQDPFL  268 (268)
T ss_pred             CchhCC----CHHHHHhCCCC
Confidence            999999    69999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=9.6e-42  Score=321.32  Aligned_cols=252  Identities=29%  Similarity=0.424  Sum_probs=204.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++.+.||+|+||.||++.++.++..    ||||.+.+..... ......+.+|+.+++.++|+||+++++++..++
T Consensus         1 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~----~~vK~~~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~   75 (267)
T cd08229           1 LANFRIEKKIGRGQFSEVYRATCLLDGVP----VALKKVQIFDLMD-AKARADCIKEIDLLKQLNHPNVIKYYASFIEDN   75 (267)
T ss_pred             CchhhhhhhhcccCCeEEEEEeecCCCce----EEEEeeeehhhhh-HHHHHHHHHHHHHHHHccCCchhhhhheeEeCC
Confidence            46899999999999999999998765544    9999886644322 233456778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ..+++|||+.|++|..++...  ....+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++..
T Consensus        76 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~  155 (267)
T cd08229          76 ELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRF  155 (267)
T ss_pred             eEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhc
Confidence            999999999999998877532  234589999999999999999999999999999999999999999999999998865


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ....                                                               .......+|+..|
T Consensus       156 ~~~~---------------------------------------------------------------~~~~~~~~~~~~~  172 (267)
T cd08229         156 FSSK---------------------------------------------------------------TTAAHSLVGTPYY  172 (267)
T ss_pred             cccC---------------------------------------------------------------CcccccccCCcCc
Confidence            4211                                                               0111234688999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH--HHHHHHHhcCC-CC--CCCCChHHHHHHHHhhhhCCCcc
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR--KETFRNVLMKT-PE--FVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~--~~~~~~i~~~~-~~--~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +|||++.+..++.++|+|||||++|+|++|..||.+...  ......+.... +.  ....+..+.++|.+||..||.+|
T Consensus       173 ~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  252 (267)
T cd08229         173 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKR  252 (267)
T ss_pred             cCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccC
Confidence            999999988899999999999999999999999976543  23333333222 11  22356899999999999999999


Q ss_pred             CCCCCChhhhh
Q 042539          330 LGYLRGACEIK  340 (412)
Q Consensus       330 ~~~~~~~~e~l  340 (412)
                      |    ++.++.
T Consensus       253 p----t~~~i~  259 (267)
T cd08229         253 P----DITYVY  259 (267)
T ss_pred             C----CHHHHH
Confidence            9    567655

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=2e-41  Score=326.59  Aligned_cols=254  Identities=24%  Similarity=0.348  Sum_probs=207.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .+.|++++.||+|+||+||++.+...+.    .||+|++....... .+..+.+.+|+.+++.++||||+++++++.+++
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~----~v~iK~~~~~~~~~-~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~   88 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNE----VVAIKKMSYSGKQS-NEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREH   88 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCc----EEEEEEEeccccCc-HHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCC
Confidence            3569999999999999999999876444    49999986543322 233456778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ..|+||||+.| ++..++.... ..+++.++..++.|++.||.|||+.||+||||+|+||+++.+|.+||+|||++....
T Consensus        89 ~~~lv~e~~~g-~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~  166 (307)
T cd06607          89 TAWLVMEYCLG-SASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVS  166 (307)
T ss_pred             eEEEEHHhhCC-CHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecC
Confidence            99999999975 5545544322 358999999999999999999999999999999999999999999999999885431


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                                                                                         ......|++.|+|
T Consensus       167 -------------------------------------------------------------------~~~~~~~~~~y~a  179 (307)
T cd06607         167 -------------------------------------------------------------------PANSFVGTPYWMA  179 (307)
T ss_pred             -------------------------------------------------------------------CCCCccCCccccC
Confidence                                                                               0123467889999


Q ss_pred             ceeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCC--CCCChHHHHHHHHhhhhCCCccC
Q 042539          257 PEVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEF--VGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       257 PE~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~--~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      ||++.   ...++.++|||||||++|+|++|.+||.+.+.......+.... +..  ...+..+.++|.+||..||.+||
T Consensus       180 PE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  259 (307)
T cd06607         180 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRP  259 (307)
T ss_pred             ceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCc
Confidence            99985   3457889999999999999999999998877666555544332 222  23567899999999999999999


Q ss_pred             CCCCChhhhhcCCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~  348 (412)
                          ++.+++.|+||...
T Consensus       260 ----~~~~il~~~~~~~~  273 (307)
T cd06607         260 ----SSEELLKHRFVLRE  273 (307)
T ss_pred             ----CHHHHhcChhhccc
Confidence                69999999999753

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.9e-41  Score=318.27  Aligned_cols=253  Identities=21%  Similarity=0.274  Sum_probs=210.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++..++|.+.++||+|+||.||+|.+...     ..||||.+......     ...+.+|+.+++.++|+||+++++++
T Consensus         1 ~~~~~~~~~i~~~ig~g~~~~v~~~~~~~~-----~~~~vK~~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~   70 (261)
T cd05034           1 WEIPRESLKLERKLGAGQFGEVWMGTWNGT-----TKVAVKTLKPGTMS-----PEAFLQEAQIMKKLRHDKLVQLYAVC   70 (261)
T ss_pred             CccchhheeeeeeeccCcceEEEEEEEcCC-----ceEEEEEecCCccC-----HHHHHHHHHHHhhCCCCCEeeeeeee
Confidence            357789999999999999999999987542     33899999764432     23466799999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ..+..+++||||+.|++|..++.......++...+..++.|++.||.|||++|++|+||||+||+++.++.+||+|||++
T Consensus        71 ~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~  150 (261)
T cd05034          71 SEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLA  150 (261)
T ss_pred             ecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccc
Confidence            99899999999999999998887655456899999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+.....                                                              .......++.
T Consensus       151 ~~~~~~~~--------------------------------------------------------------~~~~~~~~~~  168 (261)
T cd05034         151 RLIEDDEY--------------------------------------------------------------TAREGAKFPI  168 (261)
T ss_pred             eeccchhh--------------------------------------------------------------hhhhccCCCc
Confidence            75421100                                                              0001112456


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||.+.+..++.++|+|||||++|+|++ |+.||.+.+.......+....  +.....+.++.++|.+||..+|.+|
T Consensus       169 ~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  248 (261)
T cd05034         169 KWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEER  248 (261)
T ss_pred             cccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccC
Confidence            8999999998889999999999999999998 999999988877777776532  2334557899999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    +++++.+
T Consensus       249 p----~~~~l~~  256 (261)
T cd05034         249 P----TFEYLQS  256 (261)
T ss_pred             C----CHHHHHH
Confidence            9    5777663

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-41  Score=317.71  Aligned_cols=257  Identities=27%  Similarity=0.397  Sum_probs=209.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh-hhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL-HAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .+|.+.+.||+|+||.||++.+..++    ..||+|.+..... .........+.+|+.+++.++|+||+++++++.+. 
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~----~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   77 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTG----RELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPE   77 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCC----CEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCC
Confidence            58999999999999999999987654    4499998854321 11233456778899999999999999999998764 


Q ss_pred             -CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           96 -EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        96 -~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                       ..++++|||+.|++|..++....  .+++..++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||+++.
T Consensus        78 ~~~~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  155 (264)
T cd06653          78 EKKLSIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (264)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccc
Confidence             46899999999999988776543  488999999999999999999999999999999999999999999999999875


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                            ..........|+..|
T Consensus       156 ~~~~~------------------------------------------------------------~~~~~~~~~~~~~~y  175 (264)
T cd06653         156 IQTIC------------------------------------------------------------MSGTGIKSVTGTPYW  175 (264)
T ss_pred             ccccc------------------------------------------------------------ccCccccccCCcccc
Confidence            42100                                                            001111245689999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCC-CCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEF-VGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~-~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||++.+...+.++|+|||||++|+|++|+.||......+...++....  +.+ ...++.+.++|.+||+ +|.+|| 
T Consensus       176 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~-  253 (264)
T cd06653         176 MSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRP-  253 (264)
T ss_pred             cCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCc-
Confidence            99999998888999999999999999999999998877666655555332  222 3456889999999998 579999 


Q ss_pred             CCCChhhhhcCCCC
Q 042539          332 YLRGACEIKEHVFF  345 (412)
Q Consensus       332 ~~~~~~e~l~h~ff  345 (412)
                         ++.+++.|||.
T Consensus       254 ---~~~~~~~~~~~  264 (264)
T cd06653         254 ---TAEFLLRHPFV  264 (264)
T ss_pred             ---cHHHHhcCCCC
Confidence               69999999983

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-41  Score=322.67  Aligned_cols=251  Identities=27%  Similarity=0.384  Sum_probs=204.1

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc---CCCccceeeeeEEeCC
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL---SHPFLPKLLGSLETDE   96 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l---~hpnIv~l~~~~~~~~   96 (412)
                      |++++.||+|+||.||+++++.++    ..||+|+++.....  ......+.+|+.+++++   +|+||+++++++...+
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~----~~~aiK~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   74 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTG----RFVALKKVRVPLSE--EGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPR   74 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCC----CEEEEEEecccccc--chhhhhHHHHHHHHHHhhccCCCCcceEEEEEeecc
Confidence            789999999999999999987643    44999999754321  12233455677777666   5999999999998877


Q ss_pred             e-----EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           97 F-----LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        97 ~-----~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .     ++++|||+.+ +|..++.......+++..++.++.|++.||.|||++|++|+||+|+||+++.++.+||+|||+
T Consensus        75 ~~~~~~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~  153 (287)
T cd07838          75 TDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGL  153 (287)
T ss_pred             CCCCceeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCc
Confidence            6     9999999975 777776654444689999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      +......                                                                .......++
T Consensus       154 ~~~~~~~----------------------------------------------------------------~~~~~~~~~  169 (287)
T cd07838         154 ARIYSFE----------------------------------------------------------------MALTSVVVT  169 (287)
T ss_pred             ceeccCC----------------------------------------------------------------ccccccccc
Confidence            8654211                                                                111233578


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC----------------C---------
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP----------------E---------  306 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~----------------~---------  306 (412)
                      ..|+|||.+.+..++.++|+|||||++|+|++|.+||.+.+..+.+.++.....                .         
T Consensus       170 ~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (287)
T cd07838         170 LWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSF  249 (287)
T ss_pred             ccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccch
Confidence            899999999998899999999999999999999999999887777666643110                0         


Q ss_pred             ---CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 ---FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 ---~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                         .+..+..+.++|.+||..||.+||    ++++++.|+||
T Consensus       250 ~~~~~~~~~~~~~li~~~l~~dp~~Rp----~~~~il~~~~~  287 (287)
T cd07838         250 KSFVPEICEEGLDLLKKMLTFNPHKRI----SAFEALQHPYF  287 (287)
T ss_pred             hhhhhhhhHHHHHHHHHHhccCCccCC----CHHHHhcCcCC
Confidence               012346788999999999999999    69999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.1e-41  Score=339.88  Aligned_cols=263  Identities=21%  Similarity=0.307  Sum_probs=211.1

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCcccee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKL   88 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l   88 (412)
                      ..+++..++|.+.+.||+|+||.||+|+++.. +...+..||+|+++....   ....+.+.+|+.+|..+. |||||++
T Consensus        30 ~~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~E~~~l~~l~~H~niv~~  106 (401)
T cd05107          30 SAWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR---SSEKQALMSELKIMSHLGPHLNIVNL  106 (401)
T ss_pred             CcceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC---hhHHHHHHHHHHHHHhcCCCCCeEEE
Confidence            35788889999999999999999999997643 223455699999975432   223446778999999997 9999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCC-------------------------------------------------
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQND-------------------------------------------------  119 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~-------------------------------------------------  119 (412)
                      ++++..++.+|+|||||.||+|.+++.....                                                 
T Consensus       107 ~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (401)
T cd05107         107 LGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDES  186 (401)
T ss_pred             EEEEccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccc
Confidence            9999999999999999999999888764321                                                 


Q ss_pred             -----------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCC
Q 042539          120 -----------------------------------------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLK  152 (412)
Q Consensus       120 -----------------------------------------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlK  152 (412)
                                                                     ..++...+..++.||+.||+|||+.||+|||||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlk  266 (401)
T cd05107         187 ADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLA  266 (401)
T ss_pred             cCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCC
Confidence                                                           135677788999999999999999999999999


Q ss_pred             CCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          153 PENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       153 p~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                      |+|||++.++.+||+|||+++.......                                                    
T Consensus       267 p~NiLl~~~~~~kL~DfGla~~~~~~~~----------------------------------------------------  294 (401)
T cd05107         267 ARNVLICEGKLVKICDFGLARDIMRDSN----------------------------------------------------  294 (401)
T ss_pred             cceEEEeCCCEEEEEecCcceecccccc----------------------------------------------------
Confidence            9999999999999999999975421100                                                    


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC---CCCC
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT---PEFV  308 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~---~~~~  308 (412)
                               .....+..++..|+|||++.+..++.++|||||||++|||++ |..||......+.....+...   ....
T Consensus       295 ---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~  365 (401)
T cd05107         295 ---------YISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPA  365 (401)
T ss_pred             ---------cccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCC
Confidence                     001123357889999999998888999999999999999998 899998766555444443322   1223


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..+.++.+||.+||..+|.+||    ++.+++.
T Consensus       366 ~~~~~l~~li~~cl~~~P~~RP----s~~ell~  394 (401)
T cd05107         366 HASDEIYEIMQKCWEEKFEIRP----DFSQLVH  394 (401)
T ss_pred             CCCHHHHHHHHHHcCCChhHCc----CHHHHHH
Confidence            4578999999999999999999    5777765

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.6e-41  Score=318.95  Aligned_cols=251  Identities=20%  Similarity=0.288  Sum_probs=206.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|+++++||+|+||.||+|..+.     +..||+|.+......     ...+.+|+.+++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~-----~~~~a~K~~~~~~~~-----~~~~~~E~~~l~~l~h~~i~~~~~~~~   71 (260)
T cd05067           2 EVPRETLKLVKKLGAGQFGEVWMGYYNG-----HTKVAIKSLKQGSMS-----PEAFLAEANLMKQLQHPRLVRLYAVVT   71 (260)
T ss_pred             ccchHHceeeeeeccCccceEEeeecCC-----CceEEEEEecCCCCc-----HHHHHHHHHHHHhcCCcCeeeEEEEEc
Confidence            5677899999999999999999998653     234999998755432     234667999999999999999999874


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                       .+..|++|||+.+++|.+++.......+++.++..++.|++.||+|||++|++||||||+||+++.++.++|+|||++.
T Consensus        72 -~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          72 -QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             -cCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCccee
Confidence             5678999999999999888776555678999999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ......                                                              ........++..
T Consensus       151 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~~  168 (260)
T cd05067         151 LIEDNE--------------------------------------------------------------YTAREGAKFPIK  168 (260)
T ss_pred             ecCCCC--------------------------------------------------------------cccccCCccccc
Confidence            542100                                                              001112345678


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||++.+..++.++|||||||++|+|++ |++||.+.+..+....+....  +.....+.++.++|.+||..+|++||
T Consensus       169 y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  248 (260)
T cd05067         169 WTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERP  248 (260)
T ss_pred             ccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCC
Confidence            999999998888999999999999999998 999999888777666554332  22334568999999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          +++++++
T Consensus       249 ----~~~~l~~  255 (260)
T cd05067         249 ----TFEYLRS  255 (260)
T ss_pred             ----CHHHHHH
Confidence                5777664

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6.7e-42  Score=335.35  Aligned_cols=253  Identities=26%  Similarity=0.418  Sum_probs=208.0

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||.||+|++..++.    .||+|++.....  .......+.+|+.++++++|+||+++++++...
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~----~~aiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   86 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGR----KVAIKKLSRPFQ--SAIHAKRTYRELRLLKHMDHENVIGLLDVFTPA   86 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCc----EEEEEecccccc--hhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcc
Confidence            35789999999999999999999977544    499999865432  122345567799999999999999999988765


Q ss_pred             Ce------EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           96 EF------LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        96 ~~------~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +.      +|+|+||+ |++|..++..   ..+++..+..++.|++.||.|||+.||+||||||+||+++.+|.+||+||
T Consensus        87 ~~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~df  162 (343)
T cd07851          87 SSLEDFQDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDF  162 (343)
T ss_pred             ccccccccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccc
Confidence            54      99999999 6788777654   35999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |++.....                                                                  ......
T Consensus       163 g~~~~~~~------------------------------------------------------------------~~~~~~  176 (343)
T cd07851         163 GLARHTDD------------------------------------------------------------------EMTGYV  176 (343)
T ss_pred             cccccccc------------------------------------------------------------------cccCCc
Confidence            99864311                                                                  012346


Q ss_pred             cCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-----------------------
Q 042539          250 GTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-----------------------  305 (412)
Q Consensus       250 gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-----------------------  305 (412)
                      +|..|+|||.+.+. .++.++|||||||++|+|++|+.||.+.+..+.+..+.....                       
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (343)
T cd07851         177 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLP  256 (343)
T ss_pred             ccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhcc
Confidence            78899999998653 578899999999999999999999988776665554432110                       


Q ss_pred             ---------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          306 ---------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       306 ---------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                               .+...+.++.+||.+||..||.+||    ++.++++||||...
T Consensus       257 ~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rp----t~~ell~h~~~~~~  304 (343)
T cd07851         257 QMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRI----TAAEALAHPYLAEY  304 (343)
T ss_pred             ccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCC----CHHHHhcCCCcccc
Confidence                     0123578899999999999999999    79999999999854

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3e-44  Score=376.56  Aligned_cols=258  Identities=28%  Similarity=0.452  Sum_probs=216.2

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +++-...||.|.||.||-|.+..+|..    .|+|-|+-....  ......+.+|..+|..++|||+|++|++-.+.+.+
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGel----lAvKEI~iq~~~--~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv 1309 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGEL----LAVKEIKIQDSD--HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKV 1309 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccch----hhhhhhhcCccc--cccCcchHHHHHHHHhccCccccccCceeecHHHH
Confidence            566778899999999999888776554    899988655432  34455667799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      +|.||||.||+|.+++....  ..+|...+.|..|++.|+.|||++|||||||||+||+++.+|.+|++|||.|..+..+
T Consensus      1310 ~IFMEyC~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~ 1387 (1509)
T KOG4645|consen 1310 YIFMEYCEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNN 1387 (1509)
T ss_pred             HHHHHHhccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCc
Confidence            99999999999998876543  4889999999999999999999999999999999999999999999999999887543


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      .+                                                           +-.......+||+.|||||
T Consensus      1388 ~~-----------------------------------------------------------~~~~el~~~~GT~~YMAPE 1408 (1509)
T KOG4645|consen 1388 AQ-----------------------------------------------------------TMPGELQSMMGTPMYMAPE 1408 (1509)
T ss_pred             hh-----------------------------------------------------------cCCHHHHhhcCCchhcCch
Confidence            21                                                           1123344678999999999


Q ss_pred             eecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhc-CCCCCC-CCChHHHHHHHHhhhhCCCccCCC
Q 042539          259 VVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLM-KTPEFV-GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       259 ~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~-~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ++.+   .+...+.|||||||++.||+||+.||...+.. +++.++-. ..|..| ..+.+.+|||.+||+.||++|+  
T Consensus      1409 vit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw-- 1486 (1509)
T KOG4645|consen 1409 VITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRW-- 1486 (1509)
T ss_pred             hhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhh--
Confidence            9976   45678999999999999999999999875544 44444433 345544 4789999999999999999998  


Q ss_pred             CCChhhhhcCCCCCC
Q 042539          333 LRGACEIKEHVFFKG  347 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~  347 (412)
                        ++.|+++|.|-+.
T Consensus      1487 --~~~qlle~~f~~~ 1499 (1509)
T KOG4645|consen 1487 --TASQLLEHAFGKS 1499 (1509)
T ss_pred             --HHHHHHHhhcccc
Confidence              7899999998764

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-42  Score=342.35  Aligned_cols=261  Identities=24%  Similarity=0.355  Sum_probs=218.2

Q ss_pred             CCCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccc
Q 042539            7 PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLP   86 (412)
Q Consensus         7 ~~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv   86 (412)
                      |.+...+++..++..+.++||+|+||.||+++.+..+......||+|..+.+.. ...+....+++|+++|++++|||||
T Consensus       146 PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~-~~~~~~~e~m~EArvMr~l~H~NVV  224 (474)
T KOG0194|consen  146 PIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSE-LTKEQIKEFMKEARVMRQLNHPNVV  224 (474)
T ss_pred             cccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeeccccc-ccHHHHHHHHHHHHHHHhCCCCCEE
Confidence            456678999999999999999999999999988776552233399999875332 2345677888999999999999999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ++||+...+..+|+|||+|.||+|.+++..... .++..+...++.+.+.||+|||++++|||||-.+|+|++.++.+||
T Consensus       225 r~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKI  303 (474)
T KOG0194|consen  225 RFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKI  303 (474)
T ss_pred             EEEEEEcCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEe
Confidence            999999999999999999999999999887653 5899999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.-.   .+.                                        .                    ...
T Consensus       304 SDFGLs~~~~---~~~----------------------------------------~--------------------~~~  320 (474)
T KOG0194|consen  304 SDFGLSRAGS---QYV----------------------------------------M--------------------KKF  320 (474)
T ss_pred             CccccccCCc---cee----------------------------------------e--------------------ccc
Confidence            9999986431   000                                        0                    000


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC---CCCCCCChHHHHHHHHhh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~dli~~~L  322 (412)
                      ...-...|+|||.+...-|+.++|||||||++||+++ |..||.+....++...|....   +.....+.++..++.+|+
T Consensus       321 ~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~  400 (474)
T KOG0194|consen  321 LKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCW  400 (474)
T ss_pred             cccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhc
Confidence            0012357999999999999999999999999999997 899999999999999985433   222345678889999999


Q ss_pred             hhCCCccCCC
Q 042539          323 EKDPVKRLGY  332 (412)
Q Consensus       323 ~~dP~~R~~~  332 (412)
                      ..||++|+++
T Consensus       401 ~~~p~~R~tm  410 (474)
T KOG0194|consen  401 KKDPEDRPTM  410 (474)
T ss_pred             cCChhhccCH
Confidence            9999999965

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1.9e-41  Score=316.73  Aligned_cols=245  Identities=21%  Similarity=0.310  Sum_probs=198.0

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||.||+|.++..+.    .||+|.+....   ..+....+.+|+++++.++|+||+++++++.....+|+|||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~----~~a~k~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   73 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNT----PVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME   73 (252)
T ss_pred             CccCcccCccEEEEEEecCCc----eEEEEecCccC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEe
Confidence            479999999999999876544    49999886432   23445667789999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.|++|..++... ...+++.++..++.|++.||.|||++||+||||||+|||++.++.+||+|||++........   
T Consensus        74 ~~~~~~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~---  149 (252)
T cd05084          74 LVQGGDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVY---  149 (252)
T ss_pred             eccCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccc---
Confidence            99999998887543 23589999999999999999999999999999999999999999999999999864321000   


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                ........++..|+|||.+.+.
T Consensus       150 ----------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~  171 (252)
T cd05084         150 ----------------------------------------------------------ASTGGMKQIPVKWTAPEALNYG  171 (252)
T ss_pred             ----------------------------------------------------------cccCCCCCCceeecCchhhcCC
Confidence                                                                      0000011234579999999988


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      .++.++|+|||||++|+|++ |.+||...+.......+....  +.....+..+.+||.+||+.+|++||    ++.+++
T Consensus       172 ~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----s~~~~~  247 (252)
T cd05084         172 RYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRP----SFSTVH  247 (252)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCc----CHHHHH
Confidence            89999999999999999997 999998877666655554432  22234578999999999999999999    577776


Q ss_pred             c
Q 042539          341 E  341 (412)
Q Consensus       341 ~  341 (412)
                      +
T Consensus       248 ~  248 (252)
T cd05084         248 Q  248 (252)
T ss_pred             H
Confidence            3

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-41  Score=333.57  Aligned_cols=254  Identities=28%  Similarity=0.463  Sum_probs=205.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|.+.+.||+|+||.||+|.+..++.    .||+|++.+...  .......+.+|+.+++.++|+||+++++++....
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~----~vaiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~   87 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGE----KVAIKKLSRPFQ--SEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAV   87 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCc----EEEEEEecCccc--cccchhHHHHHHHHHHhcCCCCccchhheecccc
Confidence            3689999999999999999999876544    499999976432  2223455678999999999999999999987543


Q ss_pred             ------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           97 ------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        97 ------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                            .+|+||||+.+ +|..+.    ...+++..+..++.|++.||+|||++||+||||||+|||++.+|.+||+|||
T Consensus        88 ~~~~~~~~~lv~e~~~~-~l~~~~----~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg  162 (342)
T cd07879          88 SGDEFQDFYLVMPYMQT-DLQKIM----GHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFG  162 (342)
T ss_pred             cCCCCceEEEEeccccc-CHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCC
Confidence                  56999999953 554432    2348999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++....                                                                  ......|
T Consensus       163 ~~~~~~~------------------------------------------------------------------~~~~~~~  176 (342)
T cd07879         163 LARHADA------------------------------------------------------------------EMTGYVV  176 (342)
T ss_pred             CCcCCCC------------------------------------------------------------------CCCCcee
Confidence            9864310                                                                  1113467


Q ss_pred             CCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------------------C-
Q 042539          251 TEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----------------------P-  305 (412)
Q Consensus       251 t~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----------------------~-  305 (412)
                      |+.|+|||.+.+ ..++.++|||||||++|||++|+.||.+.+....+..+....                       + 
T Consensus       177 ~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (342)
T cd07879         177 TRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPK  256 (342)
T ss_pred             eecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCC
Confidence            889999999876 457899999999999999999999999877655544433210                       0 


Q ss_pred             --------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 --------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 --------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                              .++..++.+.+||.+||+.||.+|+    ++++++.||||.++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~----~~~e~l~h~~f~~~~~~  306 (342)
T cd07879         257 YPRKDFSTLFPKASPQAVDLLEKMLELDVDKRL----TATEALEHPYFDSFRDA  306 (342)
T ss_pred             cccchHHHHhcCCCHHHHHHHHHHcCCChhhCc----CHHHHhcCcchhhcccc
Confidence                    0134567899999999999999999    69999999999988753

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.7e-41  Score=323.39  Aligned_cols=259  Identities=27%  Similarity=0.394  Sum_probs=217.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..+.|++.+.||+|+||.||++.+...+    ..||+|+++....     ....+.+|+++++.++|+||+++++.+..+
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~----~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   87 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATG----KEVAIKKMRLRKQ-----NKELIINEILIMKDCKHPNIVDYYDSYLVG   87 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCC----cEEEEEEEecCch-----hHHHHHHHHHHHHHCCCCCeeEEEEEEEEC
Confidence            4567999999999999999999987644    3499999965432     344566799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ...|+++||+.|++|.+++.... ..++...+..++.|++.||.|||+.||+|+||+|+||+++.+|.++|+|||++...
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  166 (286)
T cd06614          88 DELWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQL  166 (286)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhh
Confidence            99999999999999998887654 35999999999999999999999999999999999999999999999999988644


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ....                                                               .......++..|+
T Consensus       167 ~~~~---------------------------------------------------------------~~~~~~~~~~~y~  183 (286)
T cd06614         167 TKEK---------------------------------------------------------------SKRNSVVGTPYWM  183 (286)
T ss_pred             ccch---------------------------------------------------------------hhhccccCCcccC
Confidence            2110                                                               0112345788999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-C---CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-E---FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~---~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |||.+.+..++.++|+|||||++|+|++|..||...+.......+..... .   ....+..+.+||.+||+.+|.+|| 
T Consensus       184 ~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-  262 (286)
T cd06614         184 APEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRP-  262 (286)
T ss_pred             CHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCc-
Confidence            99999888889999999999999999999999998776665555543322 1   123578899999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCCCch
Q 042539          332 YLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~~~~  351 (412)
                         ++.++++|+||+...|.
T Consensus       263 ---t~~~il~~~~~~~~~~~  279 (286)
T cd06614         263 ---SAEELLQHPFLKKACPK  279 (286)
T ss_pred             ---CHHHHhhChHhhccCch
Confidence               69999999999986653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2.2e-41  Score=319.46  Aligned_cols=258  Identities=22%  Similarity=0.316  Sum_probs=208.7

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|++.+.||+|+||.||+|.++.++. ....+|+|.++....   ......+.+|+.+++.++||||+++++++.+
T Consensus         1 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~-~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   76 (267)
T cd05066           1 IDASCIKIEKVIGAGEFGEVCSGRLKLPGK-REIPVAIKTLKAGYT---EKQRRDFLSEASIMGQFDHPNIIHLEGVVTK   76 (267)
T ss_pred             CCHHHeEeeeeecccCCCceEEEEEecCCC-CceEEEEEECCCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEec
Confidence            356799999999999999999998765432 233589999865432   2334567789999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++..|+||||+.|++|..++.... ..+++.++..++.|++.||.|||++|++||||||+|||++.++.++|+|||+++.
T Consensus        77 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~  155 (267)
T cd05066          77 SKPVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRV  155 (267)
T ss_pred             CCccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccc
Confidence            999999999999999998876543 4589999999999999999999999999999999999999999999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +......                                                            ........++..|
T Consensus       156 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~y  175 (267)
T cd05066         156 LEDDPEA------------------------------------------------------------AYTTRGGKIPIRW  175 (267)
T ss_pred             cccccce------------------------------------------------------------eeecCCCccceee
Confidence            5211000                                                            0000112345689


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||.+.+..++.++|+|||||++|++++ |..||.+.+..+....+....  +.....+..+.+++.+||+++|.+|| 
T Consensus       176 ~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  254 (267)
T cd05066         176 TAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERP-  254 (267)
T ss_pred             cCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCC-
Confidence            99999998889999999999999999886 999998887776666665432  23335678999999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         ++.++++
T Consensus       255 ---~~~~i~~  261 (267)
T cd05066         255 ---KFEQIVS  261 (267)
T ss_pred             ---CHHHHHH
Confidence               4666653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=1.1e-41  Score=329.04  Aligned_cols=254  Identities=22%  Similarity=0.317  Sum_probs=197.7

Q ss_pred             CceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeeccCCCC
Q 042539           30 AMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD  109 (412)
Q Consensus        30 ~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~  109 (412)
                      ++|.||+++++.+    +..||||++.....  .......+.+|+.+++.++|+||++++++|.+++..|++|||+.+|+
T Consensus        12 ~~~~v~~~~~~~~----~~~~avK~~~~~~~--~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216          12 DLMIVHLAKHKPT----NTLVAVKKINLDSC--SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             CCceEEEEEecCC----CCEEEEEEEecccc--chhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            4455666666553    34499999976532  22345678889999999999999999999999999999999999999


Q ss_pred             chhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCC
Q 042539          110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN  189 (412)
Q Consensus       110 L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~  189 (412)
                      |..++.......+++..++.++.|++.||+|||++||+||||||+||+++.+|.+||+|||.+..........       
T Consensus        86 l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~-------  158 (314)
T cd08216          86 CEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQ-------  158 (314)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccc-------
Confidence            9988876655569999999999999999999999999999999999999999999999999886543111000       


Q ss_pred             CCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC--CCCc
Q 042539          190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD--GHEF  267 (412)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~--~~~~  267 (412)
                                                                       ...........++..|+|||++.+.  .++.
T Consensus       159 -------------------------------------------------~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  189 (314)
T cd08216         159 -------------------------------------------------RVVHDFPKSSVKNLPWLSPEVLQQNLQGYNE  189 (314)
T ss_pred             -------------------------------------------------cccccccccccccccccCHHHhcCCCCCCCc
Confidence                                                             0001112344678899999998763  5788


Q ss_pred             hhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CC----------------------------------CCCCCh
Q 042539          268 AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PE----------------------------------FVGQRT  312 (412)
Q Consensus       268 ~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~----------------------------------~~~~~~  312 (412)
                      ++|+|||||++|+|++|..||..............+. +.                                  ....+.
T Consensus       190 ~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (314)
T cd08216         190 KSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSE  269 (314)
T ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHH
Confidence            9999999999999999999998765444322211110 00                                  001135


Q ss_pred             HHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          313 ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       313 ~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      ++.+||.+||+.||++||    +++++++||||+.+.
T Consensus       270 ~~~~li~~~l~~~P~~Rp----t~~~ll~~p~~~~~~  302 (314)
T cd08216         270 HFHQFVELCLQRDPESRP----SASQLLNHSFFKQCK  302 (314)
T ss_pred             HHHHHHHHHhhcCCCcCc----CHHHHhcCchHhhhc
Confidence            788999999999999999    699999999998764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=2.3e-41  Score=330.20  Aligned_cols=265  Identities=18%  Similarity=0.265  Sum_probs=214.4

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCC---CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCcc
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPT---ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFL   85 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnI   85 (412)
                      .+.+++...+|++++.||+|+||.||+|++...+..   ....||+|+++...   .......+.+|+++++++ +|+||
T Consensus         4 ~~~~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~i   80 (334)
T cd05100           4 DPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA---TDKDLSDLVSEMEMMKMIGKHKNI   80 (334)
T ss_pred             CcccccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc---CHHHHHHHHHHHHHHHhhcCCCCe
Confidence            467788888999999999999999999987553321   22358999886432   223355677899999999 79999


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeC
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL  151 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDl  151 (412)
                      +++++++..++.+|++|||+.+|+|..++....              ...++..++..++.|++.||.|||++||+||||
T Consensus        81 v~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dl  160 (334)
T cd05100          81 INLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDL  160 (334)
T ss_pred             eeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeecccc
Confidence            999999999999999999999999988876532              124677888999999999999999999999999


Q ss_pred             CCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCC
Q 042539          152 KPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSP  231 (412)
Q Consensus       152 Kp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (412)
                      ||+|||++.++.+||+|||+++.......                                                   
T Consensus       161 kp~Nill~~~~~~kL~Dfg~~~~~~~~~~---------------------------------------------------  189 (334)
T cd05100         161 AARNVLVTEDNVMKIADFGLARDVHNIDY---------------------------------------------------  189 (334)
T ss_pred             ccceEEEcCCCcEEECCcccceecccccc---------------------------------------------------
Confidence            99999999999999999999875421100                                                   


Q ss_pred             ccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCC
Q 042539          232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFV  308 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~  308 (412)
                                ........++..|+|||++.+..++.++|||||||++|||++ |..||.+.+..+.+..+.....  ...
T Consensus       190 ----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  259 (334)
T cd05100         190 ----------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA  259 (334)
T ss_pred             ----------cccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC
Confidence                      000112234567999999999889999999999999999998 9999999888887776655332  223


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ..+.++.+||.+||+.+|.+||    ++.+++++
T Consensus       260 ~~~~~l~~li~~cl~~~p~~Rp----s~~ell~~  289 (334)
T cd05100         260 NCTHELYMIMRECWHAVPSQRP----TFKQLVED  289 (334)
T ss_pred             CCCHHHHHHHHHHcccChhhCc----CHHHHHHH
Confidence            4578899999999999999999    57888864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.1e-41  Score=333.93  Aligned_cols=263  Identities=24%  Similarity=0.351  Sum_probs=206.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ++.+..++|++++.||+|+||+||+|.+...+. .+++.||||+++....   ......+.+|+.++..+ +|+||++++
T Consensus         1 ~~~~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~niv~~~   77 (343)
T cd05103           1 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLL   77 (343)
T ss_pred             CcccchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC---hHHHHHHHHHHHHHHhccCCccHhhhc
Confidence            467788999999999999999999998765432 3456799999965432   23345677899999999 589999999


Q ss_pred             eeEEe-CCeEEEEeeccCCCCchhHHHhhC--------------------------------------------------
Q 042539           90 GSLET-DEFLAWAVPYCPGGDLNVLRYKQN--------------------------------------------------  118 (412)
Q Consensus        90 ~~~~~-~~~~~lv~e~~~gg~L~~~~~~~~--------------------------------------------------  118 (412)
                      +++.. +..+++|||||.||+|.+++....                                                  
T Consensus        78 ~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (343)
T cd05103          78 GACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKS  157 (343)
T ss_pred             ceeecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCc
Confidence            98765 457899999999999988876432                                                  


Q ss_pred             ---------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          119 ---------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       119 ---------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                                     ...++...+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++........  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~--  235 (343)
T cd05103         158 LSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY--  235 (343)
T ss_pred             cccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcch--
Confidence                           123677888999999999999999999999999999999999999999999998754211000  


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                 .......++..|+|||++.+.
T Consensus       236 -----------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~  256 (343)
T cd05103         236 -----------------------------------------------------------VRKGDARLPLKWMAPETIFDR  256 (343)
T ss_pred             -----------------------------------------------------------hhcCCCCCCcceECcHHhcCC
Confidence                                                                       011122456789999999988


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcC-C-CC-CCCCChHHHHHHHHhhhhCCCccCCCCCChhhh
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMK-T-PE-FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEI  339 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~-~-~~-~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~  339 (412)
                      .++.++|||||||++|+|++ |..||.+......+...+.. . .. ....++++.+++.+||..||.+||    ++.++
T Consensus       257 ~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rp----s~~ei  332 (343)
T cd05103         257 VYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRP----TFSEL  332 (343)
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCc----CHHHH
Confidence            89999999999999999996 99999876543333333222 1 11 123467899999999999999999    68888


Q ss_pred             hcC
Q 042539          340 KEH  342 (412)
Q Consensus       340 l~h  342 (412)
                      ++|
T Consensus       333 l~~  335 (343)
T cd05103         333 VEH  335 (343)
T ss_pred             HHH
Confidence            864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2.8e-41  Score=321.22  Aligned_cols=257  Identities=18%  Similarity=0.234  Sum_probs=204.2

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|++++.||+|+||+||+|.+..++......|++|.+....   .......+..|+.+++.++||||+++++++. 
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-   79 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRS---GRQTFQEITDHMLAMGSLDHAYIVRLLGICP-   79 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeeccccc---chHHHHHHHHHHHHHhcCCCCCcceEEEEEC-
Confidence            567899999999999999999999877665444457888774321   1233455667888999999999999999875 


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      +...++++||+.+|+|.+++.... +.+++..+..++.||+.||.|||++|++||||||+|||++.++.+||+|||+++.
T Consensus        80 ~~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~  158 (279)
T cd05111          80 GASLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADL  158 (279)
T ss_pred             CCccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCcccee
Confidence            456789999999999988876543 4589999999999999999999999999999999999999999999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                             .........|+..|
T Consensus       159 ~~~~~-------------------------------------------------------------~~~~~~~~~~~~~y  177 (279)
T cd05111         159 LYPDD-------------------------------------------------------------KKYFYSEHKTPIKW  177 (279)
T ss_pred             ccCCC-------------------------------------------------------------cccccCCCCCcccc
Confidence            42110                                                             00011234567789


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC-C-CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP-E-FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~-~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||.+.+..++.++|||||||++|||++ |..||.+.........+..+.. . ....+.++.+++.+||..||.+|| 
T Consensus       178 ~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp-  256 (279)
T cd05111         178 MALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRP-  256 (279)
T ss_pred             cCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCc-
Confidence            99999998889999999999999999998 9999998776655443333221 1 123457899999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         ++.++++
T Consensus       257 ---s~~el~~  263 (279)
T cd05111         257 ---TFKELAN  263 (279)
T ss_pred             ---CHHHHHH
Confidence               5777764

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=2.9e-41  Score=316.86  Aligned_cols=242  Identities=19%  Similarity=0.283  Sum_probs=194.8

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++||+|+||.||+|.++...  ++..+|+|+++....  .......+.+|+.+++.++|+||+++++++. .+..++|||
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~--~~~~~aiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e   75 (257)
T cd05116           1 GELGSGNFGTVKKGMYKMKK--SEKTVAVKILKNDNN--DPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVME   75 (257)
T ss_pred             CcCCCcCCcceEEeEEecCC--CceEEEEEEccCCCC--cHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEe
Confidence            36899999999998764332  344599999865432  2334566778999999999999999999875 456799999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.+|+|..++...  ..+++..+..++.|++.||+|||++||+||||||+|||++.++.+||+|||+++........  
T Consensus        76 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~--  151 (257)
T cd05116          76 LAELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENY--  151 (257)
T ss_pred             cCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCe--
Confidence            99999998887644  35899999999999999999999999999999999999999999999999998754211000  


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                ........++..|+|||.+.+.
T Consensus       152 ----------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~  173 (257)
T cd05116         152 ----------------------------------------------------------YKAKTHGKWPVKWYAPECMNYY  173 (257)
T ss_pred             ----------------------------------------------------------eeecCCCCCCccccCHhHhccC
Confidence                                                                      0001122356789999999888


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-CC-CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-PE-FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~~-~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      .++.++|+|||||++|||++ |..||.+.+..+....+.... +. ....+.++.++|.+||+.||.+||++
T Consensus       174 ~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~  245 (257)
T cd05116         174 KFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGF  245 (257)
T ss_pred             CcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCH
Confidence            88999999999999999997 999999887777766665432 22 23467899999999999999999953

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.2e-41  Score=332.41  Aligned_cols=263  Identities=28%  Similarity=0.407  Sum_probs=207.3

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~   93 (412)
                      ...++|++.+.||+|+||.||+|.+..++    ..||+|++.+....  ......+.+|+.+++++ +|+||+++++++.
T Consensus         4 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~----~~~~vK~~~~~~~~--~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~   77 (337)
T cd07852           4 HILRKYEILQKLGKGAYGIVWKAIDRRTK----EVVALKKIFDAFRN--ATDAQRTFREIMFLQELGDHPNIVKLLNVIK   77 (337)
T ss_pred             hhhhHHHHhHhhcCCCCeeEEEEEEcCCC----eEEEEEeeccccCc--chhhhhhhHHHHHHHHhcCCCCccceeeeec
Confidence            34679999999999999999999987644    44999988653221  12234566799999999 9999999999986


Q ss_pred             eC--CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           94 TD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        94 ~~--~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      ..  ..+|+||||+. ++|..++...   .+++..++.++.||+.||+|||++||+||||||+||+++.+|.+||+|||+
T Consensus        78 ~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~  153 (337)
T cd07852          78 AENDKDIYLVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGL  153 (337)
T ss_pred             cCCCceEEEEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccc
Confidence            54  46899999997 4887665432   588999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++........                                                          ........+.||
T Consensus       154 ~~~~~~~~~~----------------------------------------------------------~~~~~~~~~~~~  175 (337)
T cd07852         154 ARSLSELEEN----------------------------------------------------------PENPVLTDYVAT  175 (337)
T ss_pred             hhcccccccc----------------------------------------------------------ccCcchhccccc
Confidence            9765321100                                                          000122345789


Q ss_pred             CCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--------------------------
Q 042539          252 EEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--------------------------  304 (412)
Q Consensus       252 ~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--------------------------  304 (412)
                      ..|+|||.+.+ ..++.++|+|||||++|+|++|++||.+....+....+....                          
T Consensus       176 ~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (337)
T cd07852         176 RWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSR  255 (337)
T ss_pred             ccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccc
Confidence            99999998865 456889999999999999999999998866554433322110                          


Q ss_pred             ------CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          305 ------PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       305 ------~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                            ...+..+.++.+||.+||+.||.+||    ++.++++|+||+.++
T Consensus       256 ~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp----s~~~il~~~~~~~~~  302 (337)
T cd07852         256 PRKPLDELLPKASDDALDLLKKLLVFNPNKRL----TAEEALEHPYVAQFH  302 (337)
T ss_pred             cccchhhhccCCCHHHHHHHHHhccCCccccc----CHHHHhhChhhhhhc
Confidence                  01223578899999999999999999    699999999998764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=3.9e-41  Score=316.73  Aligned_cols=253  Identities=30%  Similarity=0.445  Sum_probs=205.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++.+.||+|+||.||+|.+..++    +.||+|.++...... ......+.+|++++++++|+||+++++++..++
T Consensus         1 ~~~y~~~~~lg~g~~~~v~~~~~~~~~----~~~~ik~~~~~~~~~-~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~   75 (267)
T cd08224           1 LGNFKIEKKIGKGQFSVVYKAICLLDG----RVVALKKVQIFEMMD-AKARQDCLKEIDLLKQLDHPNVIKYLASFIENN   75 (267)
T ss_pred             CCceeeeeeeccCCceEEEEEEEcCCC----CEEEEEEeecccccc-hhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCC
Confidence            368999999999999999999987644    449999987544322 234566778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ..++||||+.|++|..++...  ....+++.++..++.|++.||.|||+.||+||||||+||+++.+|.++|+|||++..
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~  155 (267)
T cd08224          76 ELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRF  155 (267)
T ss_pred             eEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeee
Confidence            999999999999998877542  234589999999999999999999999999999999999999999999999999865


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +...                                                               ........|+..|
T Consensus       156 ~~~~---------------------------------------------------------------~~~~~~~~~~~~y  172 (267)
T cd08224         156 FSSK---------------------------------------------------------------TTAAHSLVGTPYY  172 (267)
T ss_pred             ccCC---------------------------------------------------------------CcccceecCCccc
Confidence            4211                                                               0111234688899


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHHhcCC-CCC--CCCChHHHHHHHHhhhhCCCcc
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN--RKETFRNVLMKT-PEF--VGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--~~~~~~~i~~~~-~~~--~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +|||.+.+..++.++|+|||||++|+|++|..||....  ..+....+.... +..  ...+..+.++|.+||..+|.+|
T Consensus       173 ~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~R  252 (267)
T cd08224         173 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKR  252 (267)
T ss_pred             cCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccC
Confidence            99999998889999999999999999999999996543  223333333221 111  2456789999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    ++.++++
T Consensus       253 p----~~~~il~  260 (267)
T cd08224         253 P----DISYVLQ  260 (267)
T ss_pred             C----CHHHHHH
Confidence            9    5777664

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=2.7e-41  Score=322.32  Aligned_cols=259  Identities=21%  Similarity=0.270  Sum_probs=209.3

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +..++|++++.||+|+||.||+|++.... ..+...||+|++.....   ......+.+|+.++++++||||+++++++.
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~   78 (288)
T cd05050           2 YPRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS---ADMQADFQREAALMAEFDHPNIVKLLGVCA   78 (288)
T ss_pred             CChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC---HHHHHHHHHHHHHHHhcCCCchheEEEEEc
Confidence            56789999999999999999999875421 12445699999865432   233456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhC--------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQN--------------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP  153 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~--------------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp  153 (412)
                      ++..+|++|||+.+|+|..++....                    ...+++.++..++.|++.||+|||++|++||||||
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p  158 (288)
T cd05050          79 VGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLAT  158 (288)
T ss_pred             CCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccH
Confidence            9999999999999999988876432                    12478888999999999999999999999999999


Q ss_pred             CceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          154 ENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       154 ~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                      +||+++.++.+||+|||+++.......                                                     
T Consensus       159 ~nil~~~~~~~~l~dfg~~~~~~~~~~-----------------------------------------------------  185 (288)
T cd05050         159 RNCLVGENMVVKIADFGLSRNIYSADY-----------------------------------------------------  185 (288)
T ss_pred             hheEecCCCceEECccccceecccCcc-----------------------------------------------------
Confidence            999999999999999999865421100                                                     


Q ss_pred             ccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCC
Q 042539          234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQ  310 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~  310 (412)
                              ........++..|+|||.+.+..++.++|||||||++|+|++ |..||.+.+..+....+.....  .....
T Consensus       186 --------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  257 (288)
T cd05050         186 --------YKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPDNC  257 (288)
T ss_pred             --------ccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCC
Confidence                    000111234567999999998889999999999999999997 8899998888877776654432  12345


Q ss_pred             ChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       311 ~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +.++.+||.+||+.||.+||    ++.|+++
T Consensus       258 ~~~l~~li~~~l~~~p~~Rp----t~~el~~  284 (288)
T cd05050         258 PLELYNLMRLCWSKLPSDRP----SFASINR  284 (288)
T ss_pred             CHHHHHHHHHHcccCcccCC----CHHHHHH
Confidence            78999999999999999999    5777653

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=2.9e-41  Score=318.95  Aligned_cols=253  Identities=18%  Similarity=0.256  Sum_probs=201.2

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC----
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD----   95 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~----   95 (412)
                      |.+.+.||+|+||.||++.+...+.  ...||+|.++....  .......+.+|+.+++.++|+||+++++++...    
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~--~~~~a~k~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   76 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDS--ILKVAVKTMKIAIC--TRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESE   76 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCC--eeeEEEEecccCcC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCccc
Confidence            3567899999999999998866542  12489999866432  223355677799999999999999999976421    


Q ss_pred             --CeEEEEeeccCCCCchhHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           96 --EFLAWAVPYCPGGDLNVLRYKQ----NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        96 --~~~~lv~e~~~gg~L~~~~~~~----~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                        ...+++|||+.+|+|..++...    ....+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+||
T Consensus        77 ~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          77 GYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCC
Confidence              2578999999999998776432    2234889999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.+.....                                                             ........
T Consensus       157 g~~~~~~~~~~-------------------------------------------------------------~~~~~~~~  175 (272)
T cd05075         157 GLSKKIYNGDY-------------------------------------------------------------YRQGRIAK  175 (272)
T ss_pred             CcccccCcccc-------------------------------------------------------------eecCCccc
Confidence            99875421100                                                             00011234


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      +++.|+|||.+.+..++.++|||||||++|+|++ |..||.+....+....+....  +.....+..+.++|.+||..||
T Consensus       176 ~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  255 (272)
T cd05075         176 MPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNP  255 (272)
T ss_pred             CCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCc
Confidence            6778999999999889999999999999999998 899999888777766665543  2234567889999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      ++||    ++.++++
T Consensus       256 ~~Rp----s~~~l~~  266 (272)
T cd05075         256 KDRP----SFETLRC  266 (272)
T ss_pred             ccCc----CHHHHHH
Confidence            9999    5788775

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-42  Score=344.20  Aligned_cols=244  Identities=31%  Similarity=0.445  Sum_probs=204.9

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~   94 (412)
                      ..+.|.+...+|.|+|+.|-.+.+..++..    +++|++.+.....        .+|+.++... +||||+++++.+.+
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~----~~vkii~~~~~~~--------~~e~~~~~~~~~h~niv~~~~v~~~  387 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQE----PAVKIISKRADDN--------QDEIPISLLVRDHPNIVKSHDVYED  387 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccc----hhheecccccccc--------ccccchhhhhcCCCcceeecceecC
Confidence            467899999999999999999999886665    9999997762211        1267666666 59999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE-ccCCCEEEccccccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSR  173 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl-~~~g~vkL~DFGla~  173 (412)
                      +.+.|+|||++.|+.+...+.....  +. .++..|++||+.|+.|||++|+|||||||+|||+ +..|+++|+|||.++
T Consensus       388 ~~~~~~v~e~l~g~ell~ri~~~~~--~~-~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~  464 (612)
T KOG0603|consen  388 GKEIYLVMELLDGGELLRRIRSKPE--FC-SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWS  464 (612)
T ss_pred             CceeeeeehhccccHHHHHHHhcch--hH-HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhh
Confidence            9999999999999988655554432  33 8888999999999999999999999999999999 688999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                                  ..+-|-|..
T Consensus       465 ~~~~~------------------------------------------------------------------~~tp~~t~~  478 (612)
T KOG0603|consen  465 ELERS------------------------------------------------------------------CDTPALTLQ  478 (612)
T ss_pred             hCchh------------------------------------------------------------------hcccchhhc
Confidence            65211                                                                  112356889


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |.|||++...+|+.+|||||||++||+||+|+.||...... ++..++..... -..+|+.++|||++||+.||.+|+  
T Consensus       479 y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~-s~~vS~~AKdLl~~LL~~dP~~Rl--  555 (612)
T KOG0603|consen  479 YVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMPKF-SECVSDEAKDLLQQLLQVDPALRL--  555 (612)
T ss_pred             ccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCCcc-ccccCHHHHHHHHHhccCChhhCc--
Confidence            99999999999999999999999999999999999887666 44444433322 267899999999999999999999  


Q ss_pred             CCChhhhhcCCCC
Q 042539          333 LRGACEIKEHVFF  345 (412)
Q Consensus       333 ~~~~~e~l~h~ff  345 (412)
                        ++.+++.|+||
T Consensus       556 --~~~~i~~h~w~  566 (612)
T KOG0603|consen  556 --GADEIGAHPWF  566 (612)
T ss_pred             --ChhhhccCcch
Confidence              69999999999

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.5e-41  Score=325.46  Aligned_cols=252  Identities=24%  Similarity=0.396  Sum_probs=208.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|....+||+|+||.||++.++.++.    .||||++....    ......+.+|+.+++.++|+||+++++.+..++..
T Consensus        21 ~~~~~~~lg~g~~g~v~~~~~~~~~~----~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   92 (292)
T cd06657          21 YLDNFIKIGEGSTGIVCIATVKSSGK----LVAVKKMDLRK----QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDEL   92 (292)
T ss_pred             HhhhHHHcCCCCCeEEEEEEEcCCCe----EEEEEEecccc----hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEE
Confidence            34455789999999999998876544    49999885432    22345677899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.+++|..++..   +.+++..++.++.|++.||+|||++|++||||||+||+++.++.++|+|||++......
T Consensus        93 ~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~  169 (292)
T cd06657          93 WVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  169 (292)
T ss_pred             EEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccc
Confidence            999999999999876543   34899999999999999999999999999999999999999999999999987643210


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                     ........||+.|+|||
T Consensus       170 ---------------------------------------------------------------~~~~~~~~~~~~y~~pE  186 (292)
T cd06657         170 ---------------------------------------------------------------VPRRKSLVGTPYWMAPE  186 (292)
T ss_pred             ---------------------------------------------------------------cccccccccCccccCHH
Confidence                                                                           01112346889999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC----CCCCCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP----EFVGQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~----~~~~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      .+.+..++.++|+|||||++|+|++|..||.+.+..+....+....+    .....+..+.++|.+||..||.+|+    
T Consensus       187 ~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~----  262 (292)
T cd06657         187 LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRA----  262 (292)
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCc----
Confidence            99888889999999999999999999999998776665554433222    2234678899999999999999999    


Q ss_pred             ChhhhhcCCCCCCC
Q 042539          335 GACEIKEHVFFKGV  348 (412)
Q Consensus       335 ~~~e~l~h~ff~~~  348 (412)
                      ++.+++.|+||...
T Consensus       263 ~~~~ll~~~~~~~~  276 (292)
T cd06657         263 TAAELLKHPFLAKA  276 (292)
T ss_pred             CHHHHhcChHHhcc
Confidence            69999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=3.8e-41  Score=316.53  Aligned_cols=251  Identities=20%  Similarity=0.270  Sum_probs=205.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|++.+.||+|+||.||+|.+....     .+|+|.+.....     ....+.+|+++++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~-----~~~lK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~   71 (260)
T cd05069           2 EIPRESLRLDVKLGQGCFGEVWMGTWNGTT-----KVAIKTLKPGTM-----MPEAFLQEAQIMKKLRHDKLVPLYAVVS   71 (260)
T ss_pred             cCChHHeeeeeeecCcCCCeEEEEEEcCCc-----eEEEEEcccCCc-----cHHHHHHHHHHHHhCCCCCeeeEEEEEc
Confidence            456788999999999999999999876532     389998865432     2345667999999999999999999875


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                       .+..|++|||+.+++|.+++.......+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||+++
T Consensus        72 -~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~  150 (260)
T cd05069          72 -EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             -CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccce
Confidence             4568999999999999888876544458899999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ......                                                              ........++..
T Consensus       151 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~~  168 (260)
T cd05069         151 LIEDNE--------------------------------------------------------------YTARQGAKFPIK  168 (260)
T ss_pred             EccCCc--------------------------------------------------------------ccccCCCccchh
Confidence            542110                                                              001112245678


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||.+.+..++.++|+|||||++|+|++ |..||.+....+....+.....  .....+..+.++|.+||.+||.+||
T Consensus       169 y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  248 (260)
T cd05069         169 WTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERP  248 (260)
T ss_pred             hCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCc
Confidence            999999988889999999999999999999 9999999887777766654421  2234678899999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          +++++++
T Consensus       249 ----~~~~i~~  255 (260)
T cd05069         249 ----TFEYIQS  255 (260)
T ss_pred             ----CHHHHHH
Confidence                5677664

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=2.3e-41  Score=330.19  Aligned_cols=273  Identities=25%  Similarity=0.356  Sum_probs=208.5

Q ss_pred             ccCce-eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH----------HHHHHHHHHHHHHhhcCCCcc
Q 042539           17 LDNLK-ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH----------EAERRARWEIRVLSRLSHPFL   85 (412)
Q Consensus        17 ~~~y~-~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~----------~~~~~~~~Ei~il~~l~hpnI   85 (412)
                      .++|. +.+.||+|+||+||+|.++..+    +.||||+++........          .....+.+|+++++.++|+||
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~----~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   82 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTG----KIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENI   82 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCC----CeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcce
Confidence            35665 4577999999999999987644    44999998765432110          011246679999999999999


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEE
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT  165 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vk  165 (412)
                      +++++++..++.+|+||||+. |+|..++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+|
T Consensus        83 v~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~k  159 (335)
T PTZ00024         83 MGLVDVYVEGDFINLVMDIMA-SDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICK  159 (335)
T ss_pred             eeeeEEEecCCcEEEEEeccc-cCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEE
Confidence            999999999999999999996 5787766543  3489999999999999999999999999999999999999999999


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|||+++............                                         ...        ........
T Consensus       160 l~dfg~~~~~~~~~~~~~~~-----------------------------------------~~~--------~~~~~~~~  190 (335)
T PTZ00024        160 IADFGLARRYGYPPYSDTLS-----------------------------------------KDE--------TMQRREEM  190 (335)
T ss_pred             ECCccceeeccccccccccc-----------------------------------------ccc--------cccccccc
Confidence            99999997653211000000                                         000        00000111


Q ss_pred             cccccCCCCccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C-----------------
Q 042539          246 NSFVGTEEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P-----------------  305 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~-----------------  305 (412)
                      ....+++.|+|||.+.+.. ++.++|+|||||++|+|++|.+||.+.+..+.+..+....  +                 
T Consensus       191 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  270 (335)
T PTZ00024        191 TSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEF  270 (335)
T ss_pred             cccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhccccccc
Confidence            2345788999999997754 6899999999999999999999999988776655543210  0                 


Q ss_pred             ----------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 ----------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 ----------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                .....+..+.++|.+||..+|++|+    ++++++.|+||++..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~----s~~~~l~~~~~~~~~  320 (335)
T PTZ00024        271 TPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERI----SAKEALKHEYFKSDP  320 (335)
T ss_pred             CcCCcccHHHhCcCCChHHHHHHHHHcCCCchhcc----CHHHHhcCcccCCCC
Confidence                      0123467899999999999999999    699999999998643

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=3e-41  Score=323.53  Aligned_cols=259  Identities=23%  Similarity=0.303  Sum_probs=203.7

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCC------------CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAAD------------PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH   82 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~------------~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h   82 (412)
                      +..++|++.+.||+|+||.||+|++....            ......||+|++....   .......+.+|+.+++.++|
T Consensus         2 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~~E~~~l~~l~~   78 (296)
T cd05095           2 FPRKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA---NKNARNDFLKEIKIMSRLKD   78 (296)
T ss_pred             CChhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC---CHHHHHHHHHHHHHHHhCCC
Confidence            34578999999999999999998765422            1123458999986542   22345567789999999999


Q ss_pred             CccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC---------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Q 042539           83 PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND---------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP  153 (412)
Q Consensus        83 pnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~---------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp  153 (412)
                      +||+++++++..++.+|+||||+.|++|..++.....         ..+++.++..++.|++.||+|||++||+||||||
T Consensus        79 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp  158 (296)
T cd05095          79 PNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLAT  158 (296)
T ss_pred             CCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCCh
Confidence            9999999999999999999999999999888765321         2367788999999999999999999999999999


Q ss_pred             CceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          154 ENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       154 ~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                      +|||++.++.++|+|||+++.+.....                                                     
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~-----------------------------------------------------  185 (296)
T cd05095         159 RNCLVGKNYTIKIADFGMSRNLYSGDY-----------------------------------------------------  185 (296)
T ss_pred             heEEEcCCCCEEeccCcccccccCCcc-----------------------------------------------------
Confidence            999999999999999999875421100                                                     


Q ss_pred             ccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh--CCCCCCCCCHHHHHHHHhc---------
Q 042539          234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY--GTTPFRGKNRKETFRNVLM---------  302 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~--g~~Pf~~~~~~~~~~~i~~---------  302 (412)
                              ........++..|+|||+..+..++.++|+|||||++|||++  |..||...+..+.......         
T Consensus       186 --------~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  257 (296)
T cd05095         186 --------YRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQV  257 (296)
T ss_pred             --------eeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccc
Confidence                    001112345678999999888889999999999999999998  7899987766554433211         


Q ss_pred             CCCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          303 KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       303 ~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..+....+++.+.+||.+||+.||.+||    ++.++.+
T Consensus       258 ~~~~~~~~~~~~~~li~~cl~~~p~~Rp----~~~~i~~  292 (296)
T cd05095         258 YLPKPALCPDSLYKLMLSCWRRNAKERP----SFQEIHA  292 (296)
T ss_pred             cCCCCCCCCHHHHHHHHHHcCCCcccCC----CHHHHHH
Confidence            0122334668999999999999999999    4666653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=1.2e-41  Score=327.60  Aligned_cols=266  Identities=27%  Similarity=0.379  Sum_probs=204.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|.+++.||+|+||.||+|.++.++.    .||+|++.......  .....+.+|+++++.++|+||+++++++...
T Consensus         6 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (311)
T cd07866           6 KLRDYEILGKLGEGTFGEVYKARQIKTGR----VVALKKILMHNEKD--GFPITALREIKILKKLKHPNVVPLIDMAVER   79 (311)
T ss_pred             ccccEEEEEEeccCCCEEEEEEEECCCCc----EEEEEEEEeccCCC--CcchhHHHHHHHHHhcCCCCccchhhheecc
Confidence            37999999999999999999999877554    49999986543221  1223455799999999999999999987543


Q ss_pred             --------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           96 --------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        96 --------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                              ..+|+||||+.+ +|...+.. ....+++..++.++.|++.||.|||++||+||||||+||+++.+|.+||+
T Consensus        80 ~~~~~~~~~~~~lv~~~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~  157 (311)
T cd07866          80 PDKSKRKRGSVYMVTPYMDH-DLSGLLEN-PSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIA  157 (311)
T ss_pred             cccccccCceEEEEEecCCc-CHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEC
Confidence                    357999999965 55444433 23459999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++..........                                     .               ...........
T Consensus       158 dfg~~~~~~~~~~~~~-------------------------------------~---------------~~~~~~~~~~~  185 (311)
T cd07866         158 DFGLARPYDGPPPNPK-------------------------------------G---------------GGGGGTRKYTN  185 (311)
T ss_pred             cCccchhccCCCcccc-------------------------------------c---------------CCccccccccc
Confidence            9999975432110000                                     0               00001112235


Q ss_pred             cccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--------------C-------
Q 042539          248 FVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--------------P-------  305 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--------------~-------  305 (412)
                      ..|++.|+|||++.+. .++.++|||||||++|+|++|++||.+.+.......+....              +       
T Consensus       186 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (311)
T cd07866         186 LVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHS  265 (311)
T ss_pred             ceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhccccccccc
Confidence            5789999999988764 47889999999999999999999999887766555443210              0       


Q ss_pred             ----------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 ----------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 ----------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                                .+......+.+||.+||+.||++||    ++.+++.||||
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~----t~~ell~~~~f  311 (311)
T cd07866         266 FTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRL----TASDALEHPYF  311 (311)
T ss_pred             CCCCCccHHHHcccCChhHHHHHHHHcccCcccCc----CHHHHhcCCCC
Confidence                      0112346788999999999999999    69999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-41  Score=313.91  Aligned_cols=247  Identities=23%  Similarity=0.314  Sum_probs=207.8

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|++.+.||.|+||.||+|...      ++.||+|.++....     ..+++.+|+.+++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~v~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~   70 (256)
T cd05039           2 AINSKELKLGATIGKGEFGDVMLGDYR------GQKVAVKCLKDDST-----AAQAFLAEASVMTTLRHPNLVQLLGVVL   70 (256)
T ss_pred             ccChhhccceeeeecCCCceEEEEEec------CcEEEEEEeccchh-----HHHHHHHHHHHHHhcCCcceeeeEEEEc
Confidence            456789999999999999999999764      23499999965432     3556778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +.+..|+||||+.+++|..++.......+++..+..++.|++.||.|||++|++||||||+||+++.+|.+||+|||+++
T Consensus        71 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~  150 (256)
T cd05039          71 QGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAK  150 (256)
T ss_pred             CCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEccccccc
Confidence            99999999999999999988876654468999999999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                                  .....++..
T Consensus       151 ~~~~~------------------------------------------------------------------~~~~~~~~~  164 (256)
T cd05039         151 EASQG------------------------------------------------------------------QDSGKLPVK  164 (256)
T ss_pred             ccccc------------------------------------------------------------------cccCCCccc
Confidence            54210                                                                  001234567


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||.+.+..++.++|+|||||++|+|++ |..||...+..+....+.....  .....++.+.++|.+||..+|++||
T Consensus       165 ~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  244 (256)
T cd05039         165 WTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRP  244 (256)
T ss_pred             ccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCc
Confidence            999999988888899999999999999997 9999998887776665554321  1234578999999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          +++++++
T Consensus       245 ----~~~~l~~  251 (256)
T cd05039         245 ----TFKQLRE  251 (256)
T ss_pred             ----CHHHHHH
Confidence                5788775

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=1.9e-41  Score=318.25  Aligned_cols=255  Identities=28%  Similarity=0.470  Sum_probs=207.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +|.+.+.||+|+||+||++++...+..    +++|+++..... ........+.+|+.+++.++||||+++++++.+.+.
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   76 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAE----ERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDA   76 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCc----ceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCc
Confidence            589999999999999999998765433    667766543221 111223456669999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           98 LAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      .++||||+.+++|..++..  .....+++.+++.++.|++.||.|||++|++|+||||+||+++. +.+||+|||+++..
T Consensus        77 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222          77 FCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             eEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeec
Confidence            9999999999999877653  23346899999999999999999999999999999999999975 67999999998654


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                               ........|++.|+
T Consensus       156 ~~~---------------------------------------------------------------~~~~~~~~~~~~~~  172 (260)
T cd08222         156 MGS---------------------------------------------------------------CDLATTFTGTPYYM  172 (260)
T ss_pred             CCC---------------------------------------------------------------cccccCCCCCcCcc
Confidence            211                                                               01122345788999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCC-CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEF-VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~-~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |||.+.+..++.++|+||||+++|+|++|..||.+.+.......+.... +.. ...+.++.++|.+||..||++||   
T Consensus       173 ~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---  249 (260)
T cd08222         173 SPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRP---  249 (260)
T ss_pred             CHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCc---
Confidence            9999988888899999999999999999999998877766666665433 222 24568999999999999999999   


Q ss_pred             CChhhhhcCCCC
Q 042539          334 RGACEIKEHVFF  345 (412)
Q Consensus       334 ~~~~e~l~h~ff  345 (412)
                       ++.++++||||
T Consensus       250 -~~~~il~~~~~  260 (260)
T cd08222         250 -SAAEILRNPFI  260 (260)
T ss_pred             -CHHHHhhCCCC
Confidence             69999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-43  Score=341.09  Aligned_cols=247  Identities=27%  Similarity=0.419  Sum_probs=209.2

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCcccee
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKL   88 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l   88 (412)
                      ....+++-++...-++=||.|+.|.||+++.+..      .||||.++.  +         -..+|+-|++|+|+||+.+
T Consensus       115 q~e~WeiPFe~IsELeWlGSGaQGAVF~Grl~ne------tVAVKKV~e--l---------kETdIKHLRkLkH~NII~F  177 (904)
T KOG4721|consen  115 QEELWEIPFEEISELEWLGSGAQGAVFLGRLHNE------TVAVKKVRE--L---------KETDIKHLRKLKHPNIITF  177 (904)
T ss_pred             hhhhccCCHHHhhhhhhhccCcccceeeeeccCc------eehhHHHhh--h---------hhhhHHHHHhccCcceeeE
Confidence            3456788888888899999999999999887542      399998732  1         1138899999999999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      .+++...-.+|||||||..|.|...+...  +.++......|..+|+.|+.|||.+.|||||||.-||||+.+..|||+|
T Consensus       178 kGVCtqsPcyCIiMEfCa~GqL~~VLka~--~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsD  255 (904)
T KOG4721|consen  178 KGVCTQSPCYCIIMEFCAQGQLYEVLKAG--RPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISD  255 (904)
T ss_pred             eeeecCCceeEEeeeccccccHHHHHhcc--CccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEecc
Confidence            99999999999999999999998887654  4589999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||-++...+.                                                                ...-+|
T Consensus       256 FGTS~e~~~~----------------------------------------------------------------STkMSF  271 (904)
T KOG4721|consen  256 FGTSKELSDK----------------------------------------------------------------STKMSF  271 (904)
T ss_pred             ccchHhhhhh----------------------------------------------------------------hhhhhh
Confidence            9999876321                                                                223478


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC---CCCCCCCChHHHHHHHHhhhhC
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---TPEFVGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~---~~~~~~~~~~~~dli~~~L~~d  325 (412)
                      +||..|||||++...+++.++|||||||+|||||||..||...+...++--+-.+   .+-...+++.++=||..||+-.
T Consensus       272 aGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sK  351 (904)
T KOG4721|consen  272 AGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSK  351 (904)
T ss_pred             hhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999887766544322221   2233356788999999999999


Q ss_pred             CCccCCCCCChhhhhcC
Q 042539          326 PVKRLGYLRGACEIKEH  342 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~h  342 (412)
                      |..||+    ..+++.|
T Consensus       352 pRNRPS----Frqil~H  364 (904)
T KOG4721|consen  352 PRNRPS----FRQILLH  364 (904)
T ss_pred             CCCCcc----HHHHHHH
Confidence            999996    5777777

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=5.8e-41  Score=326.79  Aligned_cols=254  Identities=27%  Similarity=0.433  Sum_probs=204.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      .-++|++++.||.|+||.||+|.+..++..    ||+|.+.+....  ....+.+.+|+.+++.++||||++++++|.. 
T Consensus         8 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~----vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   81 (328)
T cd07856           8 ITNRYVDLQPVGMGAFGLVCSARDQLTGQN----VAIKKIMKPFST--PVLAKRTYRELKLLKHLRHENIISLSDIFISP   81 (328)
T ss_pred             cccceEEEEeecccCCeEEEEEEECCCCCE----EEEEEecccccc--cchhHHHHHHHHHHHhcCCCCeeeEeeeEecC
Confidence            457899999999999999999998875544    999998664321  2234556679999999999999999999876 


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ....|++|||+ +++|..++..   ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus        82 ~~~~~lv~e~~-~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~  157 (328)
T cd07856          82 LEDIYFVTELL-GTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARI  157 (328)
T ss_pred             CCcEEEEeehh-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccc
Confidence            56789999999 5678666542   3488999999999999999999999999999999999999999999999998863


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ..                                                                  .......++..|
T Consensus       158 ~~------------------------------------------------------------------~~~~~~~~~~~y  171 (328)
T cd07856         158 QD------------------------------------------------------------------PQMTGYVSTRYY  171 (328)
T ss_pred             cC------------------------------------------------------------------CCcCCCcccccc
Confidence            21                                                                  011234678899


Q ss_pred             ccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc-----------------------C----CC-
Q 042539          255 VSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-----------------------K----TP-  305 (412)
Q Consensus       255 ~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~-----------------------~----~~-  305 (412)
                      +|||.+.+ ..++.++|+|||||++|+|++|++||.+.+....+..+..                       .    .+ 
T Consensus       172 ~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (328)
T cd07856         172 RAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPV  251 (328)
T ss_pred             cCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCC
Confidence            99999876 5689999999999999999999999988765332211110                       0    00 


Q ss_pred             ----CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 ----EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 ----~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                          ..+..+..+.++|.+||+.+|++|+    ++++++.|+||...+
T Consensus       252 ~~~~~~~~~~~~~~~li~~~l~~~P~~R~----t~~ell~~~~~~~~~  295 (328)
T cd07856         252 PFSEKFKNADPSAIDLLEKMLVFDPQKRI----SAAEALAHPYLAPYH  295 (328)
T ss_pred             cHHHHcCCCCHHHHHHHHHHcCCChhhCC----CHHHHhcCCcccccc
Confidence                1134568899999999999999999    699999999997543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=5.1e-41  Score=317.08  Aligned_cols=260  Identities=21%  Similarity=0.281  Sum_probs=209.5

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +...+|++.+.||+|+||.||+|.++..+. ....||||++++..   .......+..|+.+++.++||||+++++++.+
T Consensus         1 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~   76 (269)
T cd05065           1 IDVSCVKIEEVIGAGEFGEVCRGRLKLPGK-REIFVAIKTLKSGY---TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK   76 (269)
T ss_pred             CChHHeEEEeEecCCCCCeEEEEEEecCCC-CceeEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCcCcceEEEEECC
Confidence            356789999999999999999999876543 23459999986542   23345667889999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++..++||||+.|++|..++... .+.+++.+++.++.|++.||.|||++|++||||||+||+++.++.+||+|||+++.
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~  155 (269)
T cd05065          77 SRPVMIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRF  155 (269)
T ss_pred             CCceEEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccc
Confidence            99999999999999998877653 34589999999999999999999999999999999999999999999999999865


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .......                                                          ..........++..|
T Consensus       156 ~~~~~~~----------------------------------------------------------~~~~~~~~~~~~~~y  177 (269)
T cd05065         156 LEDDTSD----------------------------------------------------------PTYTSSLGGKIPIRW  177 (269)
T ss_pred             cccCccc----------------------------------------------------------cccccccCCCcceee
Confidence            4211000                                                          000000011124579


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||.+.+..++.++|||||||++|||++ |..||.+.+..+....+....  +.....+..+.+++.+||..+|.+|| 
T Consensus       178 ~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  256 (269)
T cd05065         178 TAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARP-  256 (269)
T ss_pred             cCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCc-
Confidence            99999998889999999999999999886 999999888777666664322  33345678899999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         ++.+++.
T Consensus       257 ---~~~~i~~  263 (269)
T cd05065         257 ---KFGQIVS  263 (269)
T ss_pred             ---CHHHHHH
Confidence               5777764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=6.2e-41  Score=316.18  Aligned_cols=259  Identities=20%  Similarity=0.288  Sum_probs=209.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|...+.||+|+||.||+|+++..+. ....+|+|.++....   ....+.+..|+++++.++|+||+++++++.
T Consensus         1 ~i~~~~~~~~~~lg~g~~g~vy~~~~~~~~~-~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   76 (268)
T cd05063           1 EIHPSHITKQKVIGAGEFGEVFRGILKMPGR-KEVAVAIKTLKPGYT---EKQRQDFLSEASIMGQFSHHNIIRLEGVVT   76 (268)
T ss_pred             CCChHHceEeeEecCCCCccEEEEEEecCCC-CceEEEEEeccccCC---HHHHHHHHHHHHHHhcCCCCCeeEEEEEEc
Confidence            3567899999999999999999999875443 234599999865432   223456777999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +.+..|+||||+.+++|..++.... +.+++.++..++.|++.||+|||+.|++||||||+||+++.++.+||+|||++.
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  155 (268)
T cd05063          77 KFKPAMIITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSR  155 (268)
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccce
Confidence            9999999999999999988876533 458999999999999999999999999999999999999999999999999986


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                            ..........+..
T Consensus       156 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~~  175 (268)
T cd05063         156 VLEDDPE------------------------------------------------------------GTYTTSGGKIPIR  175 (268)
T ss_pred             ecccccc------------------------------------------------------------cceeccCCCcCce
Confidence            5421100                                                            0000011223567


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||++.+..++.++|||||||++|||++ |..||...+..+....+....  +.....+..+.+++.+||..+|.+||
T Consensus       176 y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp  255 (268)
T cd05063         176 WTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRP  255 (268)
T ss_pred             ecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCc
Confidence            999999988888999999999999999997 999998888777777665432  23334678999999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          ++.++++
T Consensus       256 ----~~~~i~~  262 (268)
T cd05063         256 ----RFVDIVN  262 (268)
T ss_pred             ----CHHHHHH
Confidence                4677664

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=4.2e-41  Score=318.55  Aligned_cols=258  Identities=23%  Similarity=0.360  Sum_probs=211.3

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +..++|++++.||+|+||+||+|+.+.... .....||+|.+....   .......+.+|++++++++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   78 (275)
T cd05046           2 FPRSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK---DENLQSEFRRELDMFRKLSHKNVVRLLGLCR   78 (275)
T ss_pred             CChHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc---chHHHHHHHHHHHHHHhcCCcceeeeEEEEC
Confidence            456899999999999999999999765432 244569999885532   2234566778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCC-------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQND-------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~-------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      +.+..|+||||+.+|+|..++.....       ..+++..+..++.|++.||+|||++||+||||||+||+++.++.++|
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l  158 (275)
T cd05046          79 EAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKV  158 (275)
T ss_pred             CCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEE
Confidence            99999999999999999988765541       15899999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.....                                                              ......
T Consensus       159 ~~~~~~~~~~~~--------------------------------------------------------------~~~~~~  176 (275)
T cd05046         159 SLLSLSKDVYNS--------------------------------------------------------------EYYKLR  176 (275)
T ss_pred             cccccccccCcc--------------------------------------------------------------cccccC
Confidence            999988643110                                                              000112


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHHHHhh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLIQRLL  322 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli~~~L  322 (412)
                      ...++..|+|||.+.+...+.++|||||||++|+|++ |..||.+.........+......   ....+..+.++|.+||
T Consensus       177 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l  256 (275)
T cd05046         177 NALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCW  256 (275)
T ss_pred             CceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHHHHHHc
Confidence            3356778999999988888899999999999999998 89999887777766666543322   2346789999999999


Q ss_pred             hhCCCccCCCCCChhhhhc
Q 042539          323 EKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..||.+||    ++.+++.
T Consensus       257 ~~~p~~Rp----~~~~~l~  271 (275)
T cd05046         257 AVNPKDRP----SFSELVS  271 (275)
T ss_pred             CCCcccCC----CHHHHHH
Confidence            99999999    6888875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=8.4e-41  Score=314.23  Aligned_cols=251  Identities=20%  Similarity=0.265  Sum_probs=205.6

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++..++|++.+.||+|+||.||++.+...     ..+|+|.+.....     ....+.+|+.+++.++|+||+++++.+
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~-----~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~   70 (260)
T cd05073           1 WEIPRESLKLEKKLGAGQFGEVWMATYNKH-----TKVAVKTMKPGSM-----SVEAFLAEANVMKTLQHDKLVKLHAVV   70 (260)
T ss_pred             CcccccceeEEeEecCccceEEEEEEecCC-----ccEEEEecCCChh-----HHHHHHHHHHHHHhcCCCCcceEEEEE
Confidence            467889999999999999999999976432     2389998865422     234567799999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .. ...|++|||+.+++|.+++.......++...+..++.|++.||.|||+.|++||||||+||+++.++.+||+|||++
T Consensus        71 ~~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~  149 (260)
T cd05073          71 TK-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLA  149 (260)
T ss_pred             cC-CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcce
Confidence            87 78899999999999998887655556888999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      ..+....                                                              ........++.
T Consensus       150 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  167 (260)
T cd05073         150 RVIEDNE--------------------------------------------------------------YTAREGAKFPI  167 (260)
T ss_pred             eeccCCC--------------------------------------------------------------cccccCCcccc
Confidence            6542110                                                              00011223567


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||++.+..++.++|+|||||++|++++ |..||.+.+.......+....  +.....+.++.+++.+||..+|.+|
T Consensus       168 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  247 (260)
T cd05073         168 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEER  247 (260)
T ss_pred             cccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccC
Confidence            7999999988888999999999999999998 999999887776666554432  2234567899999999999999999


Q ss_pred             CCCCCChhhhh
Q 042539          330 LGYLRGACEIK  340 (412)
Q Consensus       330 ~~~~~~~~e~l  340 (412)
                      |    ++.+++
T Consensus       248 p----~~~~l~  254 (260)
T cd05073         248 P----TFEYIQ  254 (260)
T ss_pred             c----CHHHHH
Confidence            9    466655

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-40  Score=311.07  Aligned_cols=252  Identities=29%  Similarity=0.479  Sum_probs=212.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++.+.||+|++|.||++.+...+.    .||+|.+.+....  ......+.+|++++.+++|+||+++++++.+++..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGD----FVAIKQISLEKIK--EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSL   74 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCc----EEEEEEecccccC--HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEE
Confidence            58999999999999999998876543    4999999776542  23456788899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      +++|||+.|++|..++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.++|+|||++......
T Consensus        75 ~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  152 (254)
T cd06627          75 YIILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDV  152 (254)
T ss_pred             EEEEecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCC
Confidence            9999999999998887654  45899999999999999999999999999999999999999999999999999765311


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      .                                                               .......|+..|+|||
T Consensus       153 ~---------------------------------------------------------------~~~~~~~~~~~y~~pe  169 (254)
T cd06627         153 S---------------------------------------------------------------KDDASVVGTPYWMAPE  169 (254)
T ss_pred             c---------------------------------------------------------------ccccccccchhhcCHh
Confidence            0                                                               0122346788999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-CCCC-CCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-TPEF-VGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      .+.+..++.++|+||||+++|+|++|..||...+.......+... .+.. ...+..+.++|.+||..+|++||    ++
T Consensus       170 ~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~----~~  245 (254)
T cd06627         170 VIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLRP----TA  245 (254)
T ss_pred             hhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCChhhCc----CH
Confidence            998888899999999999999999999999877655544444322 2222 34568999999999999999999    69


Q ss_pred             hhhhcCCCC
Q 042539          337 CEIKEHVFF  345 (412)
Q Consensus       337 ~e~l~h~ff  345 (412)
                      .+++.|+||
T Consensus       246 ~~~l~~~~~  254 (254)
T cd06627         246 KQLLKHPWI  254 (254)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-42  Score=350.52  Aligned_cols=257  Identities=22%  Similarity=0.351  Sum_probs=222.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..++...+.+..+.||+|+||+||+++..... ....+.||||.++...   ..+..+.|+||+++|..++|||||+|++
T Consensus       480 ~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a---~~~~~~dF~REaeLla~l~H~nIVrLlG  556 (774)
T KOG1026|consen  480 VLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA---ENQARQDFRREAELLAELQHPNIVRLLG  556 (774)
T ss_pred             eeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc---cHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence            45778889999999999999999999876544 2356789999997653   3446778899999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCC------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQND------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI  158 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl  158 (412)
                      ++..++.+|+|+|||..|||..++.....            ..++..+...++.||+.|++||-++.+|||||..+|+||
T Consensus       557 VC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLV  636 (774)
T KOG1026|consen  557 VCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLV  636 (774)
T ss_pred             EEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhcee
Confidence            99999999999999999999999877542            127889999999999999999999999999999999999


Q ss_pred             ccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          159 RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      .++-.|||+||||++.+.....|..+.                                                     
T Consensus       637 ge~l~VKIsDfGLsRdiYssDYYk~~~-----------------------------------------------------  663 (774)
T KOG1026|consen  637 GENLVVKISDFGLSRDIYSSDYYKVRG-----------------------------------------------------  663 (774)
T ss_pred             ccceEEEecccccchhhhhhhhhcccC-----------------------------------------------------
Confidence            999999999999999887655543211                                                     


Q ss_pred             cCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHH
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALT  315 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~  315 (412)
                             ++ .-..+||+||.+....++.+|||||+||+|||+++ |..||.+.+.++++.-|..+.  +...+++.++.
T Consensus       664 -------~t-~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~lL~~Pe~CP~~vY  735 (774)
T KOG1026|consen  664 -------NT-LLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQLLSCPENCPTEVY  735 (774)
T ss_pred             -------Cc-eeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCcccCCCCCCHHHH
Confidence                   01 12458999999999999999999999999999995 999999999999999887665  33456889999


Q ss_pred             HHHHHhhhhCCCccCCC
Q 042539          316 DLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~  332 (412)
                      +|+..||+.+|.+||++
T Consensus       736 ~LM~~CW~~~P~~RPsF  752 (774)
T KOG1026|consen  736 SLMLECWNENPKRRPSF  752 (774)
T ss_pred             HHHHHHhhcCcccCCCH
Confidence            99999999999999975

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-41  Score=313.17  Aligned_cols=249  Identities=45%  Similarity=0.757  Sum_probs=210.0

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||.|+||.||++.+...+    ..||+|++.+..... ......+..|+.+++.++|+||+++++.++.+...|+||||+
T Consensus         1 lg~G~~~~v~~~~~~~~~----~~~~~k~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   75 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTG----KLYAMKVLKKKKIIK-RKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYA   75 (250)
T ss_pred             CCCCCceEEEEEEECCCC----cEEEEEEeehhhhcc-hHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecC
Confidence            799999999999987644    449999997765432 234556778999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhc
Q 042539          106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS  185 (412)
Q Consensus       106 ~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~  185 (412)
                      .+++|.+++....  .+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++.......      
T Consensus        76 ~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~------  147 (250)
T cd05123          76 PGGELFSHLSKEG--RFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG------  147 (250)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCC------
Confidence            9999988876543  48999999999999999999999999999999999999999999999999986542110      


Q ss_pred             ccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCC
Q 042539          186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  265 (412)
                                                                               .......|+..|+|||.+.+...
T Consensus       148 ---------------------------------------------------------~~~~~~~~~~~~~~Pe~~~~~~~  170 (250)
T cd05123         148 ---------------------------------------------------------SRTNTFCGTPEYLAPEVLLGKGY  170 (250)
T ss_pred             ---------------------------------------------------------CcccCCcCCccccChHHhCCCCC
Confidence                                                                     11234468889999999998888


Q ss_pred             CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCC
Q 042539          266 EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       266 ~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~f  344 (412)
                      +.++|+|||||++|+|++|..||...+..+....+......++. .++.+.++|.+||..||.+||+... ++++++|||
T Consensus       171 ~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~-~~~l~~~~~  249 (250)
T cd05123         171 GKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGG-AEEIKAHPF  249 (250)
T ss_pred             CchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCccc-HHHHHhCCC
Confidence            99999999999999999999999988877777777664444443 4789999999999999999995221 299999999


Q ss_pred             C
Q 042539          345 F  345 (412)
Q Consensus       345 f  345 (412)
                      |
T Consensus       250 f  250 (250)
T cd05123         250 F  250 (250)
T ss_pred             C
Confidence            8

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.7e-41  Score=317.71  Aligned_cols=258  Identities=21%  Similarity=0.256  Sum_probs=211.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|++++.||+|+||+||+|.++.++......||+|++.+...   ......+.+|+.+++.++|+||+++++++.
T Consensus         3 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   79 (279)
T cd05057           3 ILKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS---PKANKEILDEAYVMASVDHPHVVRLLGICL   79 (279)
T ss_pred             ccCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            45678999999999999999999998776655556799999876542   234456777999999999999999999988


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      . ...++||||+.+|+|..++.... ..+++..+..++.|++.||+|||+.||+||||||+|||++.++.+||+|||+++
T Consensus        80 ~-~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~  157 (279)
T cd05057          80 S-SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (279)
T ss_pred             c-CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccc
Confidence            7 78999999999999988876543 348999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                             ........++..
T Consensus       158 ~~~~~~~-------------------------------------------------------------~~~~~~~~~~~~  176 (279)
T cd05057         158 LLDVDEK-------------------------------------------------------------EYHAEGGKVPIK  176 (279)
T ss_pred             cccCccc-------------------------------------------------------------ceecCCCccccc
Confidence            5421100                                                             000011123568


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||.+.+..++.++|+|||||++||+++ |..||.+....+....+....  +.....+..+.+++.+||..||.+||
T Consensus       177 y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp  256 (279)
T cd05057         177 WMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRP  256 (279)
T ss_pred             ccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCC
Confidence            999999988888999999999999999998 999999988777666665433  22334568899999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          ++.++++
T Consensus       257 ----~~~~l~~  263 (279)
T cd05057         257 ----TFKELIN  263 (279)
T ss_pred             ----CHHHHHH
Confidence                4666653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=9.5e-41  Score=323.02  Aligned_cols=254  Identities=24%  Similarity=0.364  Sum_probs=207.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|..+++||+|+||+||+|++..++.    .||+|++....... ......+.+|+++++.++|+||+++++++.+++.
T Consensus        21 ~~~~~~~~lg~g~~g~v~~~~~~~~~~----~v~ik~~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   95 (313)
T cd06633          21 EIFVGLHEIGHGSFGAVYFATNSHTNE----VVAVKKMSYSGKQT-NEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHT   95 (313)
T ss_pred             HHhhcceeeccCCCeEEEEEEECCCCc----EEEEEEEeccccCc-hHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCE
Confidence            347778899999999999998876544    49999997654322 2334567779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+||||+.| ++..++... ...+++.++..++.||+.||.|||++|++|+||||+||+++.++.+||+|||++...  
T Consensus        96 ~~lv~e~~~~-~l~~~l~~~-~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~--  171 (313)
T cd06633          96 AWLVMEYCLG-SASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKS--  171 (313)
T ss_pred             EEEEEecCCC-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCccc--
Confidence            9999999965 565555443 345899999999999999999999999999999999999999999999999987421  


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                       .......|+..|+||
T Consensus       172 -----------------------------------------------------------------~~~~~~~~~~~y~aP  186 (313)
T cd06633         172 -----------------------------------------------------------------SPANSFVGTPYWMAP  186 (313)
T ss_pred             -----------------------------------------------------------------CCCCCccccccccCh
Confidence                                                                             011244688999999


Q ss_pred             eeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CC--CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          258 EVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PE--FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       258 E~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~--~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |++.   +..++.++|+|||||++|+|++|..||.+.+.......+.... +.  ....+..+++||.+||+++|.+|| 
T Consensus       187 E~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp-  265 (313)
T cd06633         187 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERP-  265 (313)
T ss_pred             hhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCc-
Confidence            9985   3457889999999999999999999998877665555554332 22  223567899999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCCC
Q 042539          332 YLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~~  349 (412)
                         ++.+++.||||...+
T Consensus       266 ---~~~~~l~~~~~~~~~  280 (313)
T cd06633         266 ---ASAELLRHDFVRRDR  280 (313)
T ss_pred             ---CHHHHhcCcccCCCc
Confidence               699999999998643

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=5.3e-41  Score=313.89  Aligned_cols=250  Identities=25%  Similarity=0.349  Sum_probs=207.8

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||.||+|.+.... ..+..||+|++.......   ....+.+|+++++.++|+||+++++++.++..+++|||
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~-~~~~~~~ik~~~~~~~~~---~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   76 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKD-GKTTEVAVKTLKEDASEE---ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLE   76 (262)
T ss_pred             CccccCCceEEEEEEEecCC-CCCceEEeEeeccccchh---HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEE
Confidence            47999999999999987541 234559999997654322   45667789999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhC-------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539          104 YCPGGDLNVLRYKQN-------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~-------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      |+.|++|..++....       ...+++..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||.+....
T Consensus        77 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  156 (262)
T cd00192          77 YMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVY  156 (262)
T ss_pred             eccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccc
Confidence            999999998877641       2458999999999999999999999999999999999999999999999999997653


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ....                                                             ........++..|+|
T Consensus       157 ~~~~-------------------------------------------------------------~~~~~~~~~~~~y~a  175 (262)
T cd00192         157 DDDY-------------------------------------------------------------YRKKTGGKLPIRWMA  175 (262)
T ss_pred             cccc-------------------------------------------------------------cccccCCCcCccccC
Confidence            2110                                                             011223457889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ||.+.+..++.++|+|||||++|+|++ |..||.+.+..+....+....  ......+.++.++|.+||..||.+||   
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---  252 (262)
T cd00192         176 PESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRP---  252 (262)
T ss_pred             HHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCc---
Confidence            999988889999999999999999998 699999988777777766432  22234578999999999999999999   


Q ss_pred             CChhhhhcC
Q 042539          334 RGACEIKEH  342 (412)
Q Consensus       334 ~~~~e~l~h  342 (412)
                       ++.+++++
T Consensus       253 -s~~~l~~~  260 (262)
T cd00192         253 -TFSELVER  260 (262)
T ss_pred             -CHHHHHHh
Confidence             68888864

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=2.5e-41  Score=324.35  Aligned_cols=258  Identities=24%  Similarity=0.310  Sum_probs=205.3

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +...++|++.+.||+|+||.||+|.++.++    +.||+|+++....  .......+.+|+++++.++||||+++++++.
T Consensus         3 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~----~~v~iK~~~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~   76 (302)
T cd07864           3 KRCVDKFDIIGQIGEGTYGQVYKARDKDTG----ELVALKKVRLDNE--KEGFPITAIREIKILRQLNHRNIVNLKEIVT   76 (302)
T ss_pred             hhhhhhhheeeeecccCCEEEEEEEECCCC----cEEEEEEEeeccc--ccCchHHHHHHHHHHHhCCCCCeeeeeheec
Confidence            456789999999999999999999987654    3499999975432  1122345567999999999999999999987


Q ss_pred             eCC----------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           94 TDE----------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        94 ~~~----------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                      +..          .+|+|+||+.+ ++..++... ...+++.+++.++.|++.||.|||+.||+||||||+||+++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~  154 (302)
T cd07864          77 DKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQ  154 (302)
T ss_pred             CcchhhhccccCCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCc
Confidence            654          89999999987 554444432 345899999999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||++........                                                              .
T Consensus       155 ~kl~dfg~~~~~~~~~~--------------------------------------------------------------~  172 (302)
T cd07864         155 IKLADFGLARLYNSEES--------------------------------------------------------------R  172 (302)
T ss_pred             EEeCcccccccccCCcc--------------------------------------------------------------c
Confidence            99999999875521100                                                              0


Q ss_pred             CCcccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC---C---------------
Q 042539          244 RSNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---T---------------  304 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~---~---------------  304 (412)
                      ......++..|+|||++.+. .++.++|||||||++|+|++|++||...+..+.+..+...   .               
T Consensus       173 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (302)
T cd07864         173 PYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFN  252 (302)
T ss_pred             ccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccccccc
Confidence            11122457789999988754 4688999999999999999999999887765554443321   0               


Q ss_pred             -------------CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          305 -------------PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       305 -------------~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                                   ..+...+..+.++|.+||..||.+||    ++.+++.||||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp----~~~~il~~~~~  302 (302)
T cd07864         253 TMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRC----TAEEALNSPWL  302 (302)
T ss_pred             ccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCC----CHHHHhcCCCC
Confidence                         01223568899999999999999999    69999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=6.3e-41  Score=320.27  Aligned_cols=255  Identities=21%  Similarity=0.318  Sum_probs=204.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +|++.+.||+|+||.||+|.+..... .....+|+|.+.+...   ......+.+|+.+++.++||||+++++.+..++.
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   77 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS---SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGP   77 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC---HHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCC
Confidence            58899999999999999998754322 1234589998865432   2234567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQN----------------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPEN  155 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~----------------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~N  155 (412)
                      .+++|||+.||+|..++....                      ...+++..+..++.|++.||+|||++||+||||||+|
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~n  157 (290)
T cd05045          78 LLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARN  157 (290)
T ss_pred             cEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhhe
Confidence            999999999999988765421                      1347889999999999999999999999999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ||++.++.+||+|||+++.......+                                                      
T Consensus       158 ill~~~~~~kl~dfg~~~~~~~~~~~------------------------------------------------------  183 (290)
T cd05045         158 VLVAEGRKMKISDFGLSRDVYEEDSY------------------------------------------------------  183 (290)
T ss_pred             EEEcCCCcEEeccccccccccCccch------------------------------------------------------
Confidence            99999999999999998754211100                                                      


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCCh
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRT  312 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~  312 (412)
                             .......++..|+|||.+.+..++.++|||||||++|+|++ |..||.+....+....+....  ......+.
T Consensus       184 -------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (290)
T cd05045         184 -------VKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCSE  256 (290)
T ss_pred             -------hcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCH
Confidence                   00112345678999999988889999999999999999998 999999888777665544321  22334678


Q ss_pred             HHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          313 ALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       313 ~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ++.+||.+||+.+|.+||    ++.++++
T Consensus       257 ~~~~~i~~cl~~~P~~Rp----~~~~i~~  281 (290)
T cd05045         257 EMYNLMLTCWKQEPDKRP----TFADISK  281 (290)
T ss_pred             HHHHHHHHHccCCcccCC----CHHHHHH
Confidence            999999999999999999    5777764

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-41  Score=318.78  Aligned_cols=252  Identities=28%  Similarity=0.448  Sum_probs=204.6

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--Ce
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--EF   97 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--~~   97 (412)
                      |++++.||+|+||.||+|.+..++.    .||+|++....  ........+.+|+++++.++|+||+++++++...  +.
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~----~~~~K~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   74 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGE----LVALKKIRMEN--EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGS   74 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCe----EEEEEEEeccc--ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCc
Confidence            7899999999999999999877544    49999997664  2223345566799999999999999999999988  89


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .++||||+.+ +|..++.... ..+++..++.++.||+.||+|||++|++|+||||+||+++.+|.+||+|||++.....
T Consensus        75 ~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~  152 (287)
T cd07840          75 IYMVFEYMDH-DLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTK  152 (287)
T ss_pred             EEEEeccccc-cHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccC
Confidence            9999999975 7776665432 4699999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ..                                                              ........++..|+||
T Consensus       153 ~~--------------------------------------------------------------~~~~~~~~~~~~y~~P  170 (287)
T cd07840         153 RN--------------------------------------------------------------SADYTNRVITLWYRPP  170 (287)
T ss_pred             CC--------------------------------------------------------------cccccccccccccCCc
Confidence            10                                                              0011123467889999


Q ss_pred             eeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C------C----------------------
Q 042539          258 EVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P------E----------------------  306 (412)
Q Consensus       258 E~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~------~----------------------  306 (412)
                      |.+.+. .++.++|||||||++|+|++|+.||...+....+..+....  +      .                      
T Consensus       171 E~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T cd07840         171 ELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLRE  250 (287)
T ss_pred             eeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHH
Confidence            988764 57899999999999999999999999887666555443210  0      0                      


Q ss_pred             -CCC-CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 -FVG-QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 -~~~-~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                       +.. .+..+.++|.+||..||.+||    +++++++|+||
T Consensus       251 ~~~~~~~~~~~~~i~~~l~~~P~~Rp----~~~~~l~~~~~  287 (287)
T cd07840         251 FFKHLIDPSALDLLDKLLTLDPKKRI----SADQALQHEYF  287 (287)
T ss_pred             HhcccCCHHHHHHHHHHcCCChhhCc----CHHHHhhCcCC
Confidence             011 267899999999999999999    69999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.9e-41  Score=321.91  Aligned_cols=259  Identities=22%  Similarity=0.281  Sum_probs=204.2

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCC----------CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADP----------TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF   84 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~----------~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn   84 (412)
                      +..++|++.+.||+|+||.||+|++..++.          .....||+|.++....   ......+.+|++++++++|+|
T Consensus         2 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~ei~~l~~l~h~~   78 (295)
T cd05097           2 FPRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT---KTARNDFLKEIKIMSRLKNPN   78 (295)
T ss_pred             CchHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC---HHHHHHHHHHHHHHHhCCCCC
Confidence            456799999999999999999998764321          1223489999865421   233456778999999999999


Q ss_pred             cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC----------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCC
Q 042539           85 LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND----------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPE  154 (412)
Q Consensus        85 Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~----------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~  154 (412)
                      |+++++++...+..++||||+.|++|..++.....          ..+++..+..++.|++.||.|||++|++||||||+
T Consensus        79 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~  158 (295)
T cd05097          79 IIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATR  158 (295)
T ss_pred             cCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChh
Confidence            99999999999999999999999999888754321          13678889999999999999999999999999999


Q ss_pred             ceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccc
Q 042539          155 NILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSR  234 (412)
Q Consensus       155 NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (412)
                      ||+++.++.+||+|||+++......                                                       
T Consensus       159 Nill~~~~~~kl~dfg~~~~~~~~~-------------------------------------------------------  183 (295)
T cd05097         159 NCLVGNHYTIKIADFGMSRNLYSGD-------------------------------------------------------  183 (295)
T ss_pred             hEEEcCCCcEEecccccccccccCc-------------------------------------------------------
Confidence            9999999999999999986542110                                                       


Q ss_pred             cccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh--CCCCCCCCCHHHHHHHHhc-----CC---
Q 042539          235 RQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY--GTTPFRGKNRKETFRNVLM-----KT---  304 (412)
Q Consensus       235 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~--g~~Pf~~~~~~~~~~~i~~-----~~---  304 (412)
                            .........++..|+|||++.+..++.++|+|||||++|+|++  |..||...+..+....+..     ..   
T Consensus       184 ------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  257 (295)
T cd05097         184 ------YYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIY  257 (295)
T ss_pred             ------ceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhcccccc
Confidence                  0001122345778999999988889999999999999999987  7789988776665544321     01   


Q ss_pred             -CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          305 -PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       305 -~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                       ...+..+..+.+||.+||..||.+||    +++++++
T Consensus       258 ~~~~~~~~~~l~~li~~~l~~~p~~RP----s~~~i~~  291 (295)
T cd05097         258 LSQTPLCPSPVFKLMMRCWSRDIKDRP----TFNKIHH  291 (295)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCchhCc----CHHHHHH
Confidence             11234568899999999999999999    4676653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=6.6e-41  Score=318.85  Aligned_cols=254  Identities=20%  Similarity=0.267  Sum_probs=197.1

Q ss_pred             cCc-eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           18 DNL-KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        18 ~~y-~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      ++| ++++.||+|+||+||++.........+..||+|+++....   ......+.+|+++++.++||||+++++++... 
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   79 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG---QQNTSGWKKEINILKTLYHENIVKYKGCCSEQG   79 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            455 9999999999999999876554444666799999965432   22345667799999999999999999987653 


Q ss_pred             -CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           96 -EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        96 -~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                       ..+|++|||+.+++|..++...   .+++.+++.++.|++.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        80 ~~~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~  156 (283)
T cd05080          80 GKGLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKA  156 (283)
T ss_pred             CceEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccc
Confidence             4689999999999998887543   399999999999999999999999999999999999999999999999999875


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .......                                                            ........++..|
T Consensus       157 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~~  176 (283)
T cd05080         157 VPEGHEY------------------------------------------------------------YRVREDGDSPVFW  176 (283)
T ss_pred             cCCcchh------------------------------------------------------------hccCCCCCCCcee
Confidence            5321100                                                            0001112356679


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH--HH------------HHHHhcCC---CCCCCCChHHHHH
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK--ET------------FRNVLMKT---PEFVGQRTALTDL  317 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~--~~------------~~~i~~~~---~~~~~~~~~~~dl  317 (412)
                      +|||++.+..++.++|||||||++|+|++|..||......  +.            ....+...   +.....+..+.++
T Consensus       177 ~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (283)
T cd05080         177 YAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYIL  256 (283)
T ss_pred             eCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHH
Confidence            9999998888899999999999999999999998653211  00            11111111   1123456899999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhc
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +.+||..||++||    +++++++
T Consensus       257 i~~cl~~~p~~Rp----s~~~i~~  276 (283)
T cd05080         257 MKNCWETEAKFRP----TFRSLIP  276 (283)
T ss_pred             HHHHhccChhhCC----CHHHHHH
Confidence            9999999999999    5777764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=6.9e-41  Score=313.69  Aligned_cols=249  Identities=22%  Similarity=0.283  Sum_probs=204.5

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||.||+|.+...+ .....||||++......   ...+.+.+|+.++++++|+||+++++.+.. ..+++|||
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e   75 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSG-GKVIPVAVKCLKSDKLS---DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTE   75 (257)
T ss_pred             CcCCccCcccEEeeeEecCC-CCceEEEEeecCCcccH---HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEE
Confidence            47899999999999986532 23345899999776543   456677889999999999999999999988 89999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.+++|..++.......+++..+..++.|++.||+|||++|++||||||+||+++.++.+||+|||+++.+......  
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~--  153 (257)
T cd05040          76 LAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH--  153 (257)
T ss_pred             ecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccc--
Confidence            999999988876654346899999999999999999999999999999999999999999999999999765321000  


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                ........++..|+|||++.+.
T Consensus       154 ----------------------------------------------------------~~~~~~~~~~~~y~~pE~~~~~  175 (257)
T cd05040         154 ----------------------------------------------------------YVMEEHLKVPFAWCAPESLRTR  175 (257)
T ss_pred             ----------------------------------------------------------eecccCCCCCceecCHHHhccc
Confidence                                                                      0001134567889999999988


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHHHHhhhhCCCccCCCCCChhhh
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEI  339 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~  339 (412)
                      .++.++|||||||++|+|++ |..||...+..+....+......   ....+..+.++|.+||..+|++||    ++.++
T Consensus       176 ~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----s~~~~  251 (257)
T cd05040         176 TFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRP----TFAAL  251 (257)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCC----CHHHH
Confidence            89999999999999999998 99999988877776666543222   224568999999999999999999    57777


Q ss_pred             hc
Q 042539          340 KE  341 (412)
Q Consensus       340 l~  341 (412)
                      ++
T Consensus       252 ~~  253 (257)
T cd05040         252 RE  253 (257)
T ss_pred             HH
Confidence            64

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=2.8e-41  Score=317.94  Aligned_cols=253  Identities=30%  Similarity=0.437  Sum_probs=203.5

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEE
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAW  100 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~l  100 (412)
                      .+.+.||.|+||.||+|..+..+...+..|+||+++...   .......+.+|++++++++||||+++++++...+..++
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~l   78 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSS---SEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFL   78 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTS---SHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecccc---ccccceeeeecccccccccccccccccccccccccccc
Confidence            578999999999999999985444466779999995432   22346677789999999999999999999998888999


Q ss_pred             EeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhh
Q 042539          101 AVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~  180 (412)
                      |||||.+|+|.+++.......++..+...++.||+.||.|||+++++|+||+++|||++.++.+||+|||+++.......
T Consensus        79 v~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~  158 (259)
T PF07714_consen   79 VMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSK  158 (259)
T ss_dssp             EEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998887455699999999999999999999999999999999999999999999999999875411100


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                                                                                   ........+...|+|||.+
T Consensus       159 -------------------------------------------------------------~~~~~~~~~~~~~~aPE~~  177 (259)
T PF07714_consen  159 -------------------------------------------------------------YKNDSSQQLPLRYLAPEVL  177 (259)
T ss_dssp             -------------------------------------------------------------EEESTTSESGGGGS-HHHH
T ss_pred             -------------------------------------------------------------ccccccccccccccccccc
Confidence                                                                         0111223466789999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCCCCChh
Q 042539          261 RGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGAC  337 (412)
Q Consensus       261 ~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~  337 (412)
                      .+..++.++||||||+++||+++ |+.||...+..+....+....  +.....+..+.++|.+||..||.+||    ++.
T Consensus       178 ~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RP----s~~  253 (259)
T PF07714_consen  178 KDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRP----SFQ  253 (259)
T ss_dssp             HHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS------HH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeccchhHHHHHHHHHHcCCChhhCc----CHH
Confidence            99889999999999999999999 789999988888777775433  22335688999999999999999999    577


Q ss_pred             hhhc
Q 042539          338 EIKE  341 (412)
Q Consensus       338 e~l~  341 (412)
                      ++++
T Consensus       254 ~i~~  257 (259)
T PF07714_consen  254 EILQ  257 (259)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=8.8e-41  Score=312.16  Aligned_cols=252  Identities=27%  Similarity=0.407  Sum_probs=212.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|++.+.||+|+||.||++.++.++.    .||+|.+.+....  ......+.+|+++++.++|+||+++++++.++...
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQ----FYALKEVDLGSMS--QKEREDAVNEIRILASVNHPNIISYKEAFLDGNKL   74 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCC----EEEEEEEehhhcc--HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEE
Confidence            58999999999999999998876544    4999999765542  23345667799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           99 AWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      |+||||+.|++|..++....  ...+++..+..++.|++.||.|||++|++|+||+|+||+++.++.+||+|||++....
T Consensus        75 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~  154 (256)
T cd08530          75 CIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLK  154 (256)
T ss_pred             EEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhc
Confidence            99999999999988765522  2458999999999999999999999999999999999999999999999999986542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                                 ......|++.|+|
T Consensus       155 ~~-----------------------------------------------------------------~~~~~~~~~~~~~  169 (256)
T cd08530         155 KN-----------------------------------------------------------------MAKTQIGTPHYMA  169 (256)
T ss_pred             cC-----------------------------------------------------------------CcccccCCccccC
Confidence            11                                                                 1112357889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-C-CCCCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-E-FVGQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~-~~~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ||.+.+..++.++|+||||+++|+|++|+.||...+..+....+..... . ....+.+++++|.+||..+|.+||    
T Consensus       170 Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  245 (256)
T cd08530         170 PEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRP----  245 (256)
T ss_pred             HHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCC----
Confidence            9999998889999999999999999999999999887766655554332 1 124568899999999999999999    


Q ss_pred             ChhhhhcCCCC
Q 042539          335 GACEIKEHVFF  345 (412)
Q Consensus       335 ~~~e~l~h~ff  345 (412)
                      ++.++++||++
T Consensus       246 ~~~~~l~~p~~  256 (256)
T cd08530         246 NCDKILASPAV  256 (256)
T ss_pred             CHHHHhcCCCC
Confidence            69999999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=9e-41  Score=320.25  Aligned_cols=260  Identities=25%  Similarity=0.400  Sum_probs=207.2

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLL   89 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~   89 (412)
                      ....+..++|++.+.||+|+||+||+|.+..++    ..||||.+++....   .....+.+|+.++..+. |+||++++
T Consensus         8 ~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~----~~~avK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~i~~~~   80 (296)
T cd06618           8 QKYPADLNDLENLGEIGSGTCGQVYKMRFKKTG----HVMAVKQMRRTGNK---EENKRILMDLDVVLKSHDCPYIVKCY   80 (296)
T ss_pred             eeccCCcchheeeeEeeccCCeEEEEEEECCCC----eEEEEEEEeccCCh---HHHHHHHHHHHHHHhccCCCchHhhh
Confidence            455788999999999999999999999987644    44999999765321   22344555777676665 99999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEcc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      +++.++..+|++|||+. +.|..++.... ..+++..+..++.|++.||.|||+ .||+||||+|+||+++.++.+||+|
T Consensus        81 ~~~~~~~~~~~v~e~~~-~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~d  158 (296)
T cd06618          81 GYFITDSDVFICMELMS-TCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCD  158 (296)
T ss_pred             eeeecCCeEEEEeeccC-cCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECc
Confidence            99999999999999985 46666554433 468999999999999999999997 5999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||++..+...                                                                ......
T Consensus       159 fg~~~~~~~~----------------------------------------------------------------~~~~~~  174 (296)
T cd06618         159 FGISGRLVDS----------------------------------------------------------------KAKTRS  174 (296)
T ss_pred             cccchhccCC----------------------------------------------------------------CcccCC
Confidence            9998654211                                                                001122


Q ss_pred             ccCCCCccceeecCCC----CCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHhcCC-CCC---CCCChHHHHHHH
Q 042539          249 VGTEEYVSPEVVRGDG----HEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLMKT-PEF---VGQRTALTDLIQ  319 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~----~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~~~~-~~~---~~~~~~~~dli~  319 (412)
                      .++..|+|||.+.+..    ++.++|+|||||++|+|++|+.||..... .+.+..++... +..   ...+.++.+||.
T Consensus       175 ~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  254 (296)
T cd06618         175 AGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVD  254 (296)
T ss_pred             CCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHH
Confidence            4788999999997654    68899999999999999999999976432 34444444432 221   235788999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +||..||.+||    ++++++.|+||..
T Consensus       255 ~~l~~~p~~Rp----~~~~il~~~~~~~  278 (296)
T cd06618         255 LCLTKDHRKRP----KYRELLQHPFIRR  278 (296)
T ss_pred             HHccCChhhCC----CHHHHhcChhhhc
Confidence            99999999999    6899999999974

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.7e-40  Score=309.52  Aligned_cols=254  Identities=32%  Similarity=0.490  Sum_probs=211.2

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--C
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--E   96 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--~   96 (412)
                      +|++.+.||+|++|.||++.+..++.    .|++|++......  ......+.+|+.++++++|+||+++++.+...  +
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~----~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGE----LMAVKSVELSGDS--EEELEALEREIRILSSLQHPNIVRYYGSERDEEKN   74 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCc----EEEEEEeeccccc--hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCC
Confidence            58899999999999999999876444    4999999765432  34456777899999999999999999999988  8


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+++++||+.|++|.+++....  .+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||.+....
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~  152 (260)
T cd06606          75 TLNIFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLG  152 (260)
T ss_pred             eEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecc
Confidence            9999999999999988876554  59999999999999999999999999999999999999999999999999987653


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ....                                                             ........++..|+|
T Consensus       153 ~~~~-------------------------------------------------------------~~~~~~~~~~~~y~~  171 (260)
T cd06606         153 DIET-------------------------------------------------------------GEGTGSVRGTPYWMA  171 (260)
T ss_pred             cccc-------------------------------------------------------------cccccCCCCCccccC
Confidence            2110                                                             001223468889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhc--CCCC-CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM--KTPE-FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~--~~~~-~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||.+.+...+.++|+|||||++|+|++|..||...+ .......+..  ..+. ....+..+.+||.+||..||.+||  
T Consensus       172 pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp--  249 (260)
T cd06606         172 PEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRP--  249 (260)
T ss_pred             HhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCC--
Confidence            999988889999999999999999999999998866 2233333332  1122 223478999999999999999999  


Q ss_pred             CCChhhhhcCCCC
Q 042539          333 LRGACEIKEHVFF  345 (412)
Q Consensus       333 ~~~~~e~l~h~ff  345 (412)
                        ++.+++.||||
T Consensus       250 --~~~~ll~~~~~  260 (260)
T cd06606         250 --TADELLQHPFL  260 (260)
T ss_pred             --CHHHHhhCCCC
Confidence              69999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=7.2e-41  Score=318.02  Aligned_cols=250  Identities=29%  Similarity=0.470  Sum_probs=203.2

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFL   98 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~   98 (412)
                      |++.+.||+|+||+||+|.+..++.    .||||.+.+....   .......+|+..++.++ |+||+++++++.+++..
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~----~~~ik~~~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   73 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGE----LVAIKKMKKKFYS---WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDEL   73 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCc----EEEEEEehhhccc---hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcE
Confidence            7889999999999999999876544    4999998654321   11223346899999999 99999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+ +|+|..++.......+++.++..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||+++.....
T Consensus        74 ~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~  152 (283)
T cd07830          74 YFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR  152 (283)
T ss_pred             EEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCC
Confidence            9999999 778877766554446899999999999999999999999999999999999999999999999998654211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                      .......|+..|+|||
T Consensus       153 ----------------------------------------------------------------~~~~~~~~~~~~~aPE  168 (283)
T cd07830         153 ----------------------------------------------------------------PPYTDYVSTRWYRAPE  168 (283)
T ss_pred             ----------------------------------------------------------------CCcCCCCCcccccCce
Confidence                                                                            1112346788999999


Q ss_pred             eecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C-----------------------------C
Q 042539          259 VVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P-----------------------------E  306 (412)
Q Consensus       259 ~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~-----------------------------~  306 (412)
                      ++.+ ..++.++|+|||||++|+|++|++||.+.+..+.+..+....  +                             .
T Consensus       169 ~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (283)
T cd07830         169 ILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQL  248 (283)
T ss_pred             eeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHH
Confidence            8854 456899999999999999999999998877655544332100  0                             0


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      .+..+.++.+||++||..||.+||    +++|++.||||
T Consensus       249 ~~~~~~~~~~li~~cl~~~p~~Rp----t~~ei~~~~~~  283 (283)
T cd07830         249 IPNASPEAIDLIKDMLRWDPKKRP----TASQALQHPYF  283 (283)
T ss_pred             cccCCHHHHHHHHHhcccCcccCC----CHHHHhhCCCC
Confidence            112357899999999999999999    69999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.7e-40  Score=308.23  Aligned_cols=249  Identities=29%  Similarity=0.514  Sum_probs=208.5

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      +|.+.+.||+|++|.||++.+...+    ..|++|++.....    .....+.+|+.+++.++|+||+++++++..+...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~----~~~~~k~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   72 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTG----KEVAIKVIKLESK----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDEL   72 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCC----cEEEEEEecccch----hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeE
Confidence            5889999999999999999987644    3499999966543    2345677799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      ++++||+.|++|..++.... ..+++..+..++.|++.||.|||++|++||||+|+||+++.++.++|+|||.+......
T Consensus        73 ~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  151 (253)
T cd05122          73 WIVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDT  151 (253)
T ss_pred             EEEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccc
Confidence            99999999999988876543 45899999999999999999999999999999999999999999999999988654211


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                      .......|+..|+|||
T Consensus       152 ----------------------------------------------------------------~~~~~~~~~~~~~~PE  167 (253)
T cd05122         152 ----------------------------------------------------------------KARNTMVGTPYWMAPE  167 (253)
T ss_pred             ----------------------------------------------------------------ccccceecCCcccCHH
Confidence                                                                            0023456888999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc-CCCCCC---CCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-KTPEFV---GQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~-~~~~~~---~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      .+.+..++.++|+|||||++|+|++|+.||...+.......... ..+...   ..+..+.++|.+||+.||++||    
T Consensus       168 ~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~----  243 (253)
T cd05122         168 VINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRP----  243 (253)
T ss_pred             HHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCC----
Confidence            99888889999999999999999999999988754443333322 222222   2268899999999999999999    


Q ss_pred             ChhhhhcCCC
Q 042539          335 GACEIKEHVF  344 (412)
Q Consensus       335 ~~~e~l~h~f  344 (412)
                      ++.++++|||
T Consensus       244 t~~~~l~~~~  253 (253)
T cd05122         244 TAEQLLKHPF  253 (253)
T ss_pred             CHHHHhcCCC
Confidence            6999999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.4e-41  Score=315.91  Aligned_cols=241  Identities=20%  Similarity=0.288  Sum_probs=192.4

Q ss_pred             eeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEE
Q 042539           24 KILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAW  100 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~l  100 (412)
                      +.||+|+||.||+|.++..+.   .....||+|.+.+..    ......+..|+.+++.++||||+++++++..++..++
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~l   76 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH----RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIM   76 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh----HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEE
Confidence            469999999999998765432   234458888875543    2334456679999999999999999999999999999


Q ss_pred             EeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC--------EEEcccccc
Q 042539          101 AVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH--------VTLTDFDLS  172 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~--------vkL~DFGla  172 (412)
                      ||||+.+|+|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.        ++++|||++
T Consensus        77 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~  155 (258)
T cd05078          77 VQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGIS  155 (258)
T ss_pred             EEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccc
Confidence            999999999988876543 35899999999999999999999999999999999999988765        699999987


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      ....                                                                   ......++.
T Consensus       156 ~~~~-------------------------------------------------------------------~~~~~~~~~  168 (258)
T cd05078         156 ITVL-------------------------------------------------------------------PKEILLERI  168 (258)
T ss_pred             cccC-------------------------------------------------------------------CchhccccC
Confidence            5431                                                                   012346788


Q ss_pred             CCccceeecCC-CCCchhhHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGD-GHEFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g-~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||++.+. .++.++|||||||++|+|++| .+||...+...... +.......+ ..+.++.+||.+||+.||.+|
T Consensus       169 ~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  247 (258)
T cd05078         169 PWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQ-FYEDRHQLPAPKWTELANLINQCMDYEPDFR  247 (258)
T ss_pred             CccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHH-HHHccccCCCCCcHHHHHHHHHHhccChhhC
Confidence            99999999874 478999999999999999998 57777666554433 222222333 345789999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    +++++++
T Consensus       248 p----s~~~il~  255 (258)
T cd05078         248 P----SFRAIIR  255 (258)
T ss_pred             C----CHHHHHH
Confidence            9    6888875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.5e-40  Score=311.83  Aligned_cols=247  Identities=19%  Similarity=0.271  Sum_probs=198.8

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++||+|+||.||+|.+...+. ....||+|.+......   .....+.+|+++++.+.|+||+++++++. .+..++|||
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~-~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e   75 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSG-KEVEVAVKTLKQEHIA---AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVME   75 (257)
T ss_pred             CccCccCceeEEEeEeeccCC-CcceEEEEecccccch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEE
Confidence            579999999999998765442 2345999999765432   34556778999999999999999999876 456899999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.+|+|..++....  .+++..+..++.|++.||+|||+.|++||||||+|||++.++.+||+|||+++........  
T Consensus        76 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~--  151 (257)
T cd05060          76 LAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY--  151 (257)
T ss_pred             eCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcc--
Confidence            999999988876544  5899999999999999999999999999999999999999999999999998754211000  


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                ........++..|+|||.+.+.
T Consensus       152 ----------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~  173 (257)
T cd05060         152 ----------------------------------------------------------YRATTAGRWPLKWYAPECINYG  173 (257)
T ss_pred             ----------------------------------------------------------cccccCccccccccCHHHhcCC
Confidence                                                                      0000111245679999999988


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      .++.++|||||||++|+|++ |.+||...+..+....+....  +.....+..++++|.+||..+|.+||    ++.+++
T Consensus       174 ~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp----~~~~l~  249 (257)
T cd05060         174 KFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRP----TFSELE  249 (257)
T ss_pred             CCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCc----CHHHHH
Confidence            89999999999999999997 999999887776666655433  22334678999999999999999999    567766


Q ss_pred             c
Q 042539          341 E  341 (412)
Q Consensus       341 ~  341 (412)
                      +
T Consensus       250 ~  250 (257)
T cd05060         250 S  250 (257)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=1.6e-40  Score=322.03  Aligned_cols=252  Identities=23%  Similarity=0.348  Sum_probs=208.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ..|..++.||+|+||.||++++..++.    .||+|++.+.... ..+....+.+|+++++.++|+||+++++++.+++.
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~----~valK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   99 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNE----VVAIKKMSYSGKQ-SNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHT   99 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCc----EEEEEEEecCCCC-chHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCe
Confidence            458899999999999999999876544    4999998765432 23445567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+||||+.| +|..++... ...+++.++..++.|++.||.|||++||+||||+|+||+++.++.+||+|||++.... 
T Consensus       100 ~~lv~e~~~g-~l~~~~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~-  176 (317)
T cd06635         100 AWLVMEYCLG-SASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIAS-  176 (317)
T ss_pred             EEEEEeCCCC-CHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccC-
Confidence            9999999975 665555433 3458999999999999999999999999999999999999999999999999875321 


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                        ......|++.|+||
T Consensus       177 ------------------------------------------------------------------~~~~~~~~~~y~aP  190 (317)
T cd06635         177 ------------------------------------------------------------------PANSFVGTPYWMAP  190 (317)
T ss_pred             ------------------------------------------------------------------CcccccCCccccCh
Confidence                                                                              01234688899999


Q ss_pred             eeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-C--CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          258 EVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-E--FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       258 E~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~--~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |++.   +..++.++|||||||++|+|++|..||...+.......+..... .  ....++.+++||.+||+.+|.+|| 
T Consensus       191 E~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-  269 (317)
T cd06635         191 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRP-  269 (317)
T ss_pred             hhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCc-
Confidence            9974   34578899999999999999999999988776666665554332 2  224567899999999999999999 


Q ss_pred             CCCChhhhhcCCCCCC
Q 042539          332 YLRGACEIKEHVFFKG  347 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~  347 (412)
                         ++.++++|+|+..
T Consensus       270 ---t~~~il~~~~~~~  282 (317)
T cd06635         270 ---TSEELLKHMFVLR  282 (317)
T ss_pred             ---CHHHHHhChhhhc
Confidence               6999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.7e-40  Score=315.39  Aligned_cols=260  Identities=19%  Similarity=0.230  Sum_probs=209.3

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|++.+.||+|+||.||+|.+...+......||+|.+....   .......+.+|+.+++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~   78 (280)
T cd05043           2 AISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA---SEIQVTLLLQESCLLYGLSHQNILPILHVCI   78 (280)
T ss_pred             ccchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            4667899999999999999999999876543345669999886432   2334566778999999999999999999876


Q ss_pred             e-CCeEEEEeeccCCCCchhHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           94 T-DEFLAWAVPYCPGGDLNVLRYKQND------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        94 ~-~~~~~lv~e~~~gg~L~~~~~~~~~------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      . +...+++++|+.+++|..++.....      ..+++..+..++.|++.||+|||++|++||||||+||+++.++.+||
T Consensus        79 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl  158 (280)
T cd05043          79 EDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKI  158 (280)
T ss_pred             cCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEE
Confidence            5 5678999999999999888765422      35899999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.+......                                                             ....
T Consensus       159 ~d~g~~~~~~~~~~~-------------------------------------------------------------~~~~  177 (280)
T cd05043         159 TDNALSRDLFPMDYH-------------------------------------------------------------CLGD  177 (280)
T ss_pred             CCCCCcccccCCceE-------------------------------------------------------------EeCC
Confidence            999999754211000                                                             0001


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~  323 (412)
                      ...++..|+|||++.+..++.++|||||||++||+++ |++||...+..+....+.....  .....++++.++|.+||.
T Consensus       178 ~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  257 (280)
T cd05043         178 NENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPINCPDELFAVMACCWA  257 (280)
T ss_pred             CCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcC
Confidence            1235678999999998889999999999999999998 9999998877666555544321  223457889999999999


Q ss_pred             hCCCccCCCCCChhhhhc
Q 042539          324 KDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~  341 (412)
                      .||++||    ++.++++
T Consensus       258 ~~p~~Rp----s~~~~~~  271 (280)
T cd05043         258 LDPEERP----SFSQLVQ  271 (280)
T ss_pred             CChhhCC----CHHHHHH
Confidence            9999999    5677764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=6.3e-41  Score=318.00  Aligned_cols=251  Identities=29%  Similarity=0.454  Sum_probs=205.2

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      |++.+.||.|++|.||+|.+...+    +.+|+|.++.....  ......+.+|+++++.++|+||+++++++.+++.+|
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~----~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   74 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTG----EIVAIKKIKLRFES--EGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLY   74 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCC----cEEEEEEecccccc--chhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEE
Confidence            678899999999999999886644    44999998765432  233456777999999999999999999999999999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      +||||+.+ +|..++.... ..+++.++..++.|++.||.|||++||+|+||||+||+++.++.+||+|||.+.......
T Consensus        75 ~v~e~~~~-~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~  152 (283)
T cd05118          75 LVFEFMDT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV  152 (283)
T ss_pred             EEEeccCC-CHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc
Confidence            99999975 7766655433 468999999999999999999999999999999999999999999999999886542110


Q ss_pred             hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcccee
Q 042539          180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  259 (412)
                                                                                     .......++..|+|||.
T Consensus       153 ---------------------------------------------------------------~~~~~~~~~~~~~~PE~  169 (283)
T cd05118         153 ---------------------------------------------------------------RPYTHYVVTRWYRAPEL  169 (283)
T ss_pred             ---------------------------------------------------------------ccccCccCcccccCcHH
Confidence                                                                           01112357889999999


Q ss_pred             ecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-------------------------------CC
Q 042539          260 VRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-------------------------------EF  307 (412)
Q Consensus       260 l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-------------------------------~~  307 (412)
                      +.+. .++.++|+|||||++|+|++|+.||.+.+..+.+..+.....                               ..
T Consensus       170 ~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (283)
T cd05118         170 LLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLF  249 (283)
T ss_pred             HhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhh
Confidence            8876 679999999999999999999999998876655444432100                               01


Q ss_pred             CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       308 ~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      +..+.++.+||.+||..||.+||    ++.+++.||||
T Consensus       250 ~~~~~~~~~~i~~~l~~~P~~Rp----~~~~ll~~~~~  283 (283)
T cd05118         250 PNASPQALDLLSQMLHYDPHKRI----TAEQALAHPYF  283 (283)
T ss_pred             hhhCHHHHHHHHHHhccCcccCc----CHHHHhhCCCC
Confidence            13467899999999999999999    69999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.3e-40  Score=312.86  Aligned_cols=241  Identities=18%  Similarity=0.277  Sum_probs=193.0

Q ss_pred             eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeec
Q 042539           25 ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPY  104 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~  104 (412)
                      .||+|+||.||++.++...  .+..||+|++....   .......+.+|+.++++++|+||++++++++ ....++||||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~--~~~~vavk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~   75 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRK--KQIDVAIKVLKNEN---EKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEM   75 (257)
T ss_pred             ccCCCCcccEEEEEEecCC--CceeEEEEEccccc---ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEe
Confidence            4899999999998775332  23349999986543   2334566778999999999999999999886 4578999999


Q ss_pred             cCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhh
Q 042539          105 CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ  184 (412)
Q Consensus       105 ~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~  184 (412)
                      +.|++|..++... ...+++..+..++.|++.||.|||++|++||||||+|||++.++.+||+|||+++........   
T Consensus        76 ~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~---  151 (257)
T cd05115          76 ASGGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSY---  151 (257)
T ss_pred             CCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccc---
Confidence            9999998877643 345899999999999999999999999999999999999999999999999998754211000   


Q ss_pred             cccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCC
Q 042539          185 SLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG  264 (412)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~  264 (412)
                                                                               ........++..|+|||++.+..
T Consensus       152 ---------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~  174 (257)
T cd05115         152 ---------------------------------------------------------YKARSAGKWPLKWYAPECINFRK  174 (257)
T ss_pred             ---------------------------------------------------------eeccCCCCCCcccCCHHHHccCC
Confidence                                                                     00001112357899999998888


Q ss_pred             CCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC-C-CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          265 HEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP-E-FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       265 ~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~-~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ++.++|||||||++|+|++ |..||.+....+....+..... . ....+.++.++|.+||..||++||++
T Consensus       175 ~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~  245 (257)
T cd05115         175 FSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNF  245 (257)
T ss_pred             CCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            9999999999999999996 9999998887776666654332 2 23457899999999999999999953

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.4e-40  Score=313.61  Aligned_cols=243  Identities=19%  Similarity=0.244  Sum_probs=190.3

Q ss_pred             eeeeccCceEEEEEEEcCCCC--------CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           24 KILGKGAMGTVFLVHDRAADP--------TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~--------~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      +.||+|+||.||++.......        .....||+|++....    ......+..|+.+++.++||||+++++++..+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~   76 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH----RDISLAFFETASMMRQVSHKHIVLLYGVCVRD   76 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh----hhHHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            468999999999997532211        123348888875532    23445667789999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC-------EEEcc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH-------VTLTD  168 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~-------vkL~D  168 (412)
                      ...++||||+.+|+|..++... ...+++..+..++.||+.||+|||++||+||||||+|||++.++.       +|++|
T Consensus        77 ~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d  155 (262)
T cd05077          77 VENIMVEEFVEFGPLDLFMHRK-SDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSD  155 (262)
T ss_pred             CCCEEEEecccCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCC
Confidence            9999999999999998776543 345899999999999999999999999999999999999987764       89999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||++.....                                                                   ....
T Consensus       156 ~g~~~~~~~-------------------------------------------------------------------~~~~  168 (262)
T cd05077         156 PGIPITVLS-------------------------------------------------------------------RQEC  168 (262)
T ss_pred             CCCCccccC-------------------------------------------------------------------cccc
Confidence            998854311                                                                   1123


Q ss_pred             ccCCCCccceeec-CCCCCchhhHHHHHHHHHHHh-hCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCC
Q 042539          249 VGTEEYVSPEVVR-GDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       249 ~gt~~Y~APE~l~-~~~~~~~~DiwSlGvil~ell-~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      .|+..|+|||++. +..++.++|||||||++|+|+ +|..||......+...............++++.+||.+||+.||
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp  248 (262)
T cd05077         169 VERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYEGQCMLVTPSCKELADLMTHCMNYDP  248 (262)
T ss_pred             cccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHhcCccCCCCChHHHHHHHHHHcCCCh
Confidence            5788899999987 456899999999999999997 69999987665444322211112222345789999999999999


Q ss_pred             CccCCCCCChhhhhcC
Q 042539          327 VKRLGYLRGACEIKEH  342 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h  342 (412)
                      .+||    +..+++.+
T Consensus       249 ~~Rp----~~~~il~~  260 (262)
T cd05077         249 NQRP----FFRAIMRD  260 (262)
T ss_pred             hhCc----CHHHHHHh
Confidence            9999    57888753

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=2.1e-40  Score=310.22  Aligned_cols=249  Identities=20%  Similarity=0.274  Sum_probs=204.6

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ...+|++.+.||+|+||.||++.+.. +    ..+|+|.+......     ...+.+|++++++++|+||+++++++...
T Consensus         2 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~----~~~~~k~~~~~~~~-----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   71 (256)
T cd05112           2 HPSELTLVQEIGSGQFGLVWLGYWLE-K----RKVAIKTIREGAMS-----EEDFIEEAQVMMKLSHPKLVQLYGVCTER   71 (256)
T ss_pred             ChhHeEEEeeecCcccceEEEEEEeC-C----CeEEEEECCCCCCC-----HHHHHHHHHHHHhCCCCCeeeEEEEEccC
Confidence            46789999999999999999998753 2    23899998755432     23456799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ...|+||||+.|++|..++.... +.+++..++.++.|++.||+|||+.|++||||||+||+++.++.+||+|||+++..
T Consensus        72 ~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  150 (256)
T cd05112          72 SPICLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFV  150 (256)
T ss_pred             CceEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeec
Confidence            99999999999999988776433 35889999999999999999999999999999999999999999999999998654


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ....                                                              ........++..|+
T Consensus       151 ~~~~--------------------------------------------------------------~~~~~~~~~~~~~~  168 (256)
T cd05112         151 LDDQ--------------------------------------------------------------YTSSTGTKFPVKWS  168 (256)
T ss_pred             ccCc--------------------------------------------------------------ccccCCCccchhhc
Confidence            2100                                                              00011223567899


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |||.+.+..++.++|+|||||++|||++ |+.||...........+......  ....+..+.+|+.+||..+|++||  
T Consensus       169 aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp--  246 (256)
T cd05112         169 SPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRP--  246 (256)
T ss_pred             CHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCC--
Confidence            9999998889999999999999999998 99999988877777666543221  223578999999999999999999  


Q ss_pred             CCChhhhhc
Q 042539          333 LRGACEIKE  341 (412)
Q Consensus       333 ~~~~~e~l~  341 (412)
                        ++.++++
T Consensus       247 --~~~~~l~  253 (256)
T cd05112         247 --SFSLLLH  253 (256)
T ss_pred             --CHHHHHH
Confidence              6888875

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-42  Score=306.34  Aligned_cols=265  Identities=25%  Similarity=0.329  Sum_probs=205.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +..++-++|.+.+.||+|||+.||+|+...++..    ||+|.|....    .+.....++|++..++++||||++++++
T Consensus        15 tv~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~----YAlKkI~c~~----~~~~e~~~rEid~~rkf~s~~vl~l~dh   86 (302)
T KOG2345|consen   15 TVIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHL----YALKKILCHS----QEDIEEALREIDNHRKFNSPNVLRLVDH   86 (302)
T ss_pred             cEEEcCceEEEeeeecCCCceeeeeecccCcccc----hhhheeeccc----hHHHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            3456678999999999999999999997665544    9999996653    3456778889999999999999999998


Q ss_pred             EEeCC-----eEEEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccCC
Q 042539           92 LETDE-----FLAWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSG  162 (412)
Q Consensus        92 ~~~~~-----~~~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~g  162 (412)
                      ...+.     ..||+++|...|+|.+.+....  +..++|.++..|+.+|+.||++||+..  ++||||||.|||+...+
T Consensus        87 ~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~  166 (302)
T KOG2345|consen   87 QLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSG  166 (302)
T ss_pred             HHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCC
Confidence            75433     4999999999999977765543  335999999999999999999999999  99999999999999999


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      ..+|.|||.++..........+..                   .+.+|                                
T Consensus       167 ~~vl~D~GS~~~a~i~i~~~~~a~-------------------~lQe~--------------------------------  195 (302)
T KOG2345|consen  167 LPVLMDLGSATQAPIQIEGSRQAL-------------------RLQEW--------------------------------  195 (302)
T ss_pred             ceEEEeccCccccceEeechHHHH-------------------HHHHH--------------------------------
Confidence            999999999876643222111110                   01111                                


Q ss_pred             CCCcccccCCCCccceeecCC---CCCchhhHHHHHHHHHHHhhCCCCCCCCCHH--HHHHHHhcCC---CCCCCCChHH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGD---GHEFAVDWWALGILTYEMLYGTTPFRGKNRK--ETFRNVLMKT---PEFVGQRTAL  314 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~---~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~--~~~~~i~~~~---~~~~~~~~~~  314 (412)
                         ..-..|..|+|||.+.-+   ..+.++|||||||+||+|+.|..||+..-..  .+.-.+....   |.-...+..+
T Consensus       196 ---a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l  272 (302)
T KOG2345|consen  196 ---AEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEAL  272 (302)
T ss_pred             ---HHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHH
Confidence               122468889999998654   3488999999999999999999999642110  0011122222   3333467899


Q ss_pred             HHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          315 TDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       315 ~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      .+||.+||+.||.+||    ++.+++.+
T Consensus       273 ~~lik~mlqvdP~qRP----~i~~ll~~  296 (302)
T KOG2345|consen  273 HQLIKSMLQVDPNQRP----TIPELLSK  296 (302)
T ss_pred             HHHHHHHhcCCcccCC----CHHHHHHH
Confidence            9999999999999999    68888763

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=2.2e-40  Score=309.50  Aligned_cols=253  Identities=24%  Similarity=0.349  Sum_probs=209.4

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      +++++.||.|+||.||++.+...+......||+|++.....   ......+..|+.+++.++|+||+++++++.+.+..|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   77 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD---EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLM   77 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC---hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeE
Confidence            46789999999999999999876534456699999965532   124556778999999999999999999999999999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      ++|||+.|++|..++.......+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||+++......
T Consensus        78 ~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  157 (258)
T smart00219       78 IVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD  157 (258)
T ss_pred             EEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceeccccc
Confidence            99999999999888765443338999999999999999999999999999999999999999999999999987653210


Q ss_pred             hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcccee
Q 042539          180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  259 (412)
                      .+                                                          .    .....+++.|+|||.
T Consensus       158 ~~----------------------------------------------------------~----~~~~~~~~~y~~Pe~  175 (258)
T smart00219      158 YY----------------------------------------------------------K----KKGGKLPIRWMAPES  175 (258)
T ss_pred             cc----------------------------------------------------------c----cccCCCcccccChHH
Confidence            00                                                          0    001126789999999


Q ss_pred             ecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccCCCCCCh
Q 042539          260 VRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       260 l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      +.+..++.++|+|||||++|+|++ |.+||.+.+.......+.....  .....+.++.+++.+||..||++||    ++
T Consensus       176 ~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp----t~  251 (258)
T smart00219      176 LKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRP----TF  251 (258)
T ss_pred             hccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCc----CH
Confidence            988888999999999999999998 8999998887777776654432  2234578999999999999999999    68


Q ss_pred             hhhhc
Q 042539          337 CEIKE  341 (412)
Q Consensus       337 ~e~l~  341 (412)
                      .++++
T Consensus       252 ~~ll~  256 (258)
T smart00219      252 SELVE  256 (258)
T ss_pred             HHHHh
Confidence            88875

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-40  Score=314.21  Aligned_cols=245  Identities=22%  Similarity=0.341  Sum_probs=196.6

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +.||+|+||.||+++++.++.  ...+|+|.++...   .......+.+|++++.++ +||||+++++++...+.+|+||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~--~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~   75 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGL--RMDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAI   75 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCC--eeEEEEEEccccC---CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEE
Confidence            468999999999999876542  2337888886432   123345677799999999 6999999999999999999999


Q ss_pred             eccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539          103 PYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      ||+.+|+|..++....              ...+++.+++.++.|++.||+|||++|++||||||+|||++.++.+||+|
T Consensus        76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~d  155 (270)
T cd05047          76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIAD  155 (270)
T ss_pred             EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECC
Confidence            9999999988876432              12478999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||++......                                                                ......
T Consensus       156 fgl~~~~~~~----------------------------------------------------------------~~~~~~  171 (270)
T cd05047         156 FGLSRGQEVY----------------------------------------------------------------VKKTMG  171 (270)
T ss_pred             CCCccccchh----------------------------------------------------------------hhccCC
Confidence            9988532100                                                                000112


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhC
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~d  325 (412)
                      ..+..|+|||++.+..++.++|+|||||++|||++ |..||.+.+..+.+..+.....  .....+.++.++|.+||..|
T Consensus       172 ~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  251 (270)
T cd05047         172 RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREK  251 (270)
T ss_pred             CCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccC
Confidence            34567999999988889999999999999999996 9999998887777666644321  22345688999999999999


Q ss_pred             CCccCCCCCChhhhhc
Q 042539          326 PVKRLGYLRGACEIKE  341 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~  341 (412)
                      |.+||    ++.++++
T Consensus       252 p~~Rp----s~~~il~  263 (270)
T cd05047         252 PYERP----SFAQILV  263 (270)
T ss_pred             hhhCC----CHHHHHH
Confidence            99999    5677664

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.5e-40  Score=316.71  Aligned_cols=257  Identities=20%  Similarity=0.253  Sum_probs=201.5

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      -.-|++++.||+|+||.||+|+....+..++..||+|.++....   ......+.+|+++++.++|+||+++++++... 
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   79 (284)
T cd05079           3 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG---GNHIADLKKEIEILRNLYHENIVKYKGICTEDG   79 (284)
T ss_pred             hhhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc---HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCC
Confidence            35689999999999999999987665555677799999865421   23345678899999999999999999998875 


Q ss_pred             -CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           96 -EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        96 -~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                       ...++||||+.|++|..++.... ..+++.++..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.
T Consensus        80 ~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~  158 (284)
T cd05079          80 GNGIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKA  158 (284)
T ss_pred             CCceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccc
Confidence             57899999999999988875432 3589999999999999999999999999999999999999999999999999875


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +......                                                            ........|+..|
T Consensus       159 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~y  178 (284)
T cd05079         159 IETDKEY------------------------------------------------------------YTVKDDLDSPVFW  178 (284)
T ss_pred             cccCccc------------------------------------------------------------eeecCCCCCCccc
Confidence            5211100                                                            0011234577789


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC--------------HHHHHHHHhc---CCCCCCCCChHHHHH
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN--------------RKETFRNVLM---KTPEFVGQRTALTDL  317 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--------------~~~~~~~i~~---~~~~~~~~~~~~~dl  317 (412)
                      +|||.+.+..++.++|||||||++|+|+++..|+....              ........+.   ..+.....+..+.+|
T Consensus       179 ~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  258 (284)
T cd05079         179 YAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQL  258 (284)
T ss_pred             cCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHH
Confidence            99999988888999999999999999999876643210              0111111111   112234567899999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhc
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |.+||+.||.+||    ++.++++
T Consensus       259 i~~~l~~~p~~Rp----t~~~il~  278 (284)
T cd05079         259 MRKCWEFQPSKRT----TFQNLIE  278 (284)
T ss_pred             HHHHccCCcccCc----CHHHHHH
Confidence            9999999999999    6888875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=3e-40  Score=311.98  Aligned_cols=256  Identities=20%  Similarity=0.333  Sum_probs=207.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|.+.+.||+|+||.||+|.+.... .....||||.+.....   ....+.+.+|+++++.++|+||+++++++.
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~-~~~~~v~ik~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~   77 (270)
T cd05056           2 EIQREDITLGRCIGEGQFGDVYQGVYMSPE-NEKIAVAVKTCKNCTS---PSVREKFLQEAYIMRQFDHPHIVKLIGVIT   77 (270)
T ss_pred             eechhhceeeeeeCCccceeEEEEEEecCC-CCCcceEEEecCCcCC---HHHHHHHHHHHHHHHhCCCCchhceeEEEc
Confidence            355678999999999999999999876542 1334589998865431   234456778999999999999999999887


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      + +..|+||||+.+|+|..++.... ..+++..+..++.|++.||+|||++|++||||||+|||++.++.+||+|||+++
T Consensus        78 ~-~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~  155 (270)
T cd05056          78 E-NPVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSR  155 (270)
T ss_pred             C-CCcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceee
Confidence            5 45789999999999998876533 358999999999999999999999999999999999999999999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                              .......++..
T Consensus       156 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  173 (270)
T cd05056         156 YLEDESY--------------------------------------------------------------YKASKGKLPIK  173 (270)
T ss_pred             ecccccc--------------------------------------------------------------eecCCCCcccc
Confidence            5421100                                                              00012234568


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||.+.+..++.++|||||||++|+|++ |..||.+.+..+....+....  +.....+..+.++|.+||..+|.+||
T Consensus       174 y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp  253 (270)
T cd05056         174 WMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRP  253 (270)
T ss_pred             ccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            999999988889999999999999999986 999999988777666665432  23345678999999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          ++.+++.
T Consensus       254 ----t~~~~~~  260 (270)
T cd05056         254 ----RFTELKA  260 (270)
T ss_pred             ----CHHHHHH
Confidence                5777765

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.9e-40  Score=310.61  Aligned_cols=244  Identities=22%  Similarity=0.299  Sum_probs=201.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +.+++|++.+.||+|+||.||++..      .++.||+|.++...      ....+.+|+.+++.++|+||+++++++..
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~------~~~~~~iK~~~~~~------~~~~~~~e~~~l~~~~~~~i~~~~~~~~~   70 (254)
T cd05083           3 LNLQKLTLGEIIGEGEFGAVLQGEY------TGQKVAVKNIKCDV------TAQAFLEETAVMTKLHHKNLVRLLGVILH   70 (254)
T ss_pred             ccHHHceeeeeeccCCCCceEeccc------CCCceEEEeecCcc------hHHHHHHHHHHHHhCCCCCcCeEEEEEcC
Confidence            4678999999999999999998753      23349999985432      23456779999999999999999999875


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      + ..|+||||+.|++|..++.......+++..+..++.|++.||.|||++|++||||||+||+++.+|.+||+|||+++.
T Consensus        71 ~-~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~  149 (254)
T cd05083          71 N-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARV  149 (254)
T ss_pred             C-CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCcccee
Confidence            4 479999999999999888766555689999999999999999999999999999999999999999999999998864


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ....                                                                  ......+..|
T Consensus       150 ~~~~------------------------------------------------------------------~~~~~~~~~y  163 (254)
T cd05083         150 GSMG------------------------------------------------------------------VDNSKLPVKW  163 (254)
T ss_pred             cccc------------------------------------------------------------------CCCCCCCcee
Confidence            3100                                                                  0011234679


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||.+.+..++.++|+|||||++|+|++ |++||.+.+..+....+....  ......+..+.++|.+||..+|.+|| 
T Consensus       164 ~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  242 (254)
T cd05083         164 TAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRP-  242 (254)
T ss_pred             cCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCc-
Confidence            99999988889999999999999999997 999999988777666554432  12234678999999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         +++++++
T Consensus       243 ---~~~~l~~  249 (254)
T cd05083         243 ---SFHKLRE  249 (254)
T ss_pred             ---CHHHHHH
Confidence               5777664

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=7.5e-41  Score=317.33  Aligned_cols=251  Identities=29%  Similarity=0.436  Sum_probs=205.8

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      |++.+.||+|+||.||+|.+..++.    .||+|++.....  .......+..|+.+++.++|+||+++++++.+.+.++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~----~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~   74 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGE----IVALKKIRLDNE--EEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLY   74 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCc----EEEEEEeccccc--cccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceE
Confidence            6788999999999999998876544    499999976541  2233455667999999999999999999999999999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      +||||+. ++|..++.... ..+++..+..++.|++.||.|||++||+||||+|+||+++.++.+||+|||+++..... 
T Consensus        75 ~v~e~~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~-  151 (282)
T cd07829          75 LVFEYCD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIP-  151 (282)
T ss_pred             EEecCcC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCC-
Confidence            9999997 58888776543 35999999999999999999999999999999999999999999999999998754211 


Q ss_pred             hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcccee
Q 042539          180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  259 (412)
                                                                                    ........++..|+|||.
T Consensus       152 --------------------------------------------------------------~~~~~~~~~~~~~~aPE~  169 (282)
T cd07829         152 --------------------------------------------------------------LRTYTHEVVTLWYRAPEI  169 (282)
T ss_pred             --------------------------------------------------------------ccccCccccCcCcCChHH
Confidence                                                                          001112345778999999


Q ss_pred             ecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC------------------------------CCCC
Q 042539          260 VRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT------------------------------PEFV  308 (412)
Q Consensus       260 l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~------------------------------~~~~  308 (412)
                      +.+. .++.++|+|||||++|||++|.+||.+.+..+.+.++....                              ..++
T Consensus       170 ~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (282)
T cd07829         170 LLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLP  249 (282)
T ss_pred             hcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcc
Confidence            8776 67899999999999999999999999877665544433100                              0112


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ..+..+.++|.+||..||++||    ++++++.||||
T Consensus       250 ~~~~~~~~~i~~~l~~~P~~Rp----~~~~~l~~p~~  282 (282)
T cd07829         250 RLDPEGIDLLSKMLQYNPAKRI----SAKEALKHPYF  282 (282)
T ss_pred             cccHHHHHHHHHhhccCcccCC----CHHHHhhCcCC
Confidence            3467899999999999999999    79999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=310.43  Aligned_cols=263  Identities=24%  Similarity=0.372  Sum_probs=215.8

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccce
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPK   87 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~   87 (412)
                      +.....++.++++-+..||.|+||+|++-.++..+    +..|||.|+....   +..+++++.|..+..+- ++||||+
T Consensus        55 ~~~~~~F~~~~Lqdlg~iG~G~fG~V~KM~hk~sg----~~mAVKrIr~~n~---~keq~rll~e~d~~mks~~cp~IVk  127 (361)
T KOG1006|consen   55 DAHLHTFTSDNLQDLGEIGNGAFGTVNKMLHKPSG----KLMAVKRIRSNNI---EKEQKRLLMEHDTVMKSSNCPNIVK  127 (361)
T ss_pred             cccccccccchHHHHHHhcCCcchhhhhhhcCccC----cEEEEEEeeeccc---hHHHHHHHHHHHHHHhhcCCcHHHH
Confidence            44567889999999999999999999987776644    4599999976543   44567778888877666 5999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCch---hHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCC
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLN---VLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~---~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~  163 (412)
                      +|++...++.-|+.||+|. .+|+   .+.+......++|+.+-.+..-.+.||.||-. .+|||||+||+|||++..|.
T Consensus       128 fyGa~F~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~  206 (361)
T KOG1006|consen  128 FYGALFSEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGD  206 (361)
T ss_pred             HhhhhhcCCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCC
Confidence            9999998889999999994 3443   23444455669999999999999999999975 58999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||||||++..+.++...                                                              
T Consensus       207 vKLCDFGIcGqLv~SiAk--------------------------------------------------------------  224 (361)
T KOG1006|consen  207 VKLCDFGICGQLVDSIAK--------------------------------------------------------------  224 (361)
T ss_pred             EeeecccchHhHHHHHHh--------------------------------------------------------------
Confidence            999999999887654331                                                              


Q ss_pred             CCcccccCCCCccceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcCCCCCC-------CCChH
Q 042539          244 RSNSFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKTPEFV-------GQRTA  313 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~~~~~~-------~~~~~  313 (412)
                        +.-.|-..|||||.+..  .+|+.+||+||||++|||+.||..|+.+-+ ..+++.+++.+.++..       ..+..
T Consensus       225 --T~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~  302 (361)
T KOG1006|consen  225 --TVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFS  302 (361)
T ss_pred             --hhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHH
Confidence              11247788999999864  468999999999999999999999999854 4466677777765532       34678


Q ss_pred             HHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          314 LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       314 ~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +..||+-||.+|...||.    ..++++++|++-
T Consensus       303 ~~~fintCl~Kd~~~Rpk----y~~Lk~~~fyr~  332 (361)
T KOG1006|consen  303 MVRFINTCLIKDRSDRPK----YDDLKKFPFYRM  332 (361)
T ss_pred             HHHHHHHHhhcccccCcc----hhhhhcCchhhh
Confidence            999999999999999995    799999999974

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=2.6e-40  Score=318.30  Aligned_cols=258  Identities=21%  Similarity=0.283  Sum_probs=205.8

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      -+..++|++++.||+|+||.||++.+..++......||+|++.....   ......+.+|+.+++.++|+||+++++++.
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~l~h~niv~~~~~~~   79 (303)
T cd05110           3 ILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG---PKANVEFMDEALIMASMDHPHLVRLLGVCL   79 (303)
T ss_pred             ccchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCcccEEEEEc
Confidence            35678999999999999999999998776654445689998865432   223345677999999999999999999887


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .. ..++++||+.+|+|..++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+++
T Consensus        80 ~~-~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~  157 (303)
T cd05110          80 SP-TIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (303)
T ss_pred             CC-CceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccc
Confidence            54 4679999999999988876543 358899999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.....                                                             ........++..
T Consensus       158 ~~~~~~~-------------------------------------------------------------~~~~~~~~~~~~  176 (303)
T cd05110         158 LLEGDEK-------------------------------------------------------------EYNADGGKMPIK  176 (303)
T ss_pred             cccCccc-------------------------------------------------------------ccccCCCccccc
Confidence            5421100                                                             001112345778


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||.+.+..++.++|||||||++|||++ |..||.+.........+....  +.....+..+.++|.+||..+|++||
T Consensus       177 y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp  256 (303)
T cd05110         177 WMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRP  256 (303)
T ss_pred             cCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            999999998889999999999999999997 999998876555443333221  22334568899999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          +++++++
T Consensus       257 ----~~~~l~~  263 (303)
T cd05110         257 ----KFKELAA  263 (303)
T ss_pred             ----CHHHHHH
Confidence                5777765

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=2.2e-40  Score=319.71  Aligned_cols=255  Identities=23%  Similarity=0.328  Sum_probs=207.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..+.|+.++.||+|+||.||+++++.++    ..||+|.+....... ......+.+|+++++.++|+||+++++++..+
T Consensus        13 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~----~~~~ik~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   87 (308)
T cd06634          13 PEKLFSDLREIGHGSFGAVYFARDVRNS----EVVAIKKMSYSGKQS-NEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE   87 (308)
T ss_pred             cHHHHHHHHheeeCCCEEEEEEEEcCCC----cEEEEEEEecccccC-hHHHHHHHHHHHHHHhCCCCCcccEEEEEEcC
Confidence            3456888999999999999999987654    349999986543222 23345667799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ...++||||+. |++..++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.+|.+||+|||++...
T Consensus        88 ~~~~lv~e~~~-~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  165 (308)
T cd06634          88 HTAWLVMEYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM  165 (308)
T ss_pred             CeeEEEEEccC-CCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceee
Confidence            99999999996 46665554333 45899999999999999999999999999999999999999999999999988643


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ..                                                                   .....|++.|+
T Consensus       166 ~~-------------------------------------------------------------------~~~~~~~~~y~  178 (308)
T cd06634         166 AP-------------------------------------------------------------------ANXFVGTPYWM  178 (308)
T ss_pred             cC-------------------------------------------------------------------cccccCCcccc
Confidence            10                                                                   11346888999


Q ss_pred             cceeecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CC--CCCCChHHHHHHHHhhhhCCCcc
Q 042539          256 SPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PE--FVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       256 APE~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~--~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |||.+.+   ..++.++|||||||++|+|++|..||...+..+....+.... +.  ....+..+.+||.+||..+|.+|
T Consensus       179 aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~R  258 (308)
T cd06634         179 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDR  258 (308)
T ss_pred             CHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccC
Confidence            9999753   456889999999999999999999998766555544444332 22  22467889999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~  348 (412)
                      |    +++++++|+|+...
T Consensus       259 p----~~~~ll~~~~~~~~  273 (308)
T cd06634         259 P----TSEVLLKHRFVLRE  273 (308)
T ss_pred             C----CHHHHhhCcccccc
Confidence            9    69999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.7e-40  Score=313.70  Aligned_cols=257  Identities=23%  Similarity=0.308  Sum_probs=199.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      +-++|++++.||+|+||.||++.....+...+..||+|.+....    ....+.+.+|+++++.++||||+++++++.. 
T Consensus         2 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   77 (284)
T cd05081           2 EERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST----AEHLRDFEREIEILKSLQHDNIVKYKGVCYSA   77 (284)
T ss_pred             ccccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccC
Confidence            34689999999999999999998665455566679999986543    2334567789999999999999999998643 


Q ss_pred             -CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           95 -DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        95 -~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                       ...+++||||+.|++|..++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+++
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~  156 (284)
T cd05081          78 GRRNLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTK  156 (284)
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccc
Confidence             357899999999999998875432 358999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ........                                                            ........++..
T Consensus       157 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~  176 (284)
T cd05081         157 VLPQDKEY------------------------------------------------------------YKVREPGESPIF  176 (284)
T ss_pred             cccCCCcc------------------------------------------------------------eeecCCCCCceE
Confidence            55211100                                                            000011123456


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH---------------HHHHHhcCC---CCCCCCChHHH
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE---------------TFRNVLMKT---PEFVGQRTALT  315 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~---------------~~~~i~~~~---~~~~~~~~~~~  315 (412)
                      |+|||++.+..++.++|||||||++|||++|..++.......               .+..++...   +.....+.++.
T Consensus       177 y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (284)
T cd05081         177 WYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIY  256 (284)
T ss_pred             eeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHH
Confidence            999999998889999999999999999999887764432110               011122211   22345678999


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +||.+||..+|++||    ++.++++
T Consensus       257 ~li~~cl~~~p~~Rp----t~~ei~~  278 (284)
T cd05081         257 AIMKECWNNDPSQRP----SFSELAL  278 (284)
T ss_pred             HHHHHHccCChhhCC----CHHHHHH
Confidence            999999999999999    6888775

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=8.4e-40  Score=305.09  Aligned_cols=243  Identities=21%  Similarity=0.311  Sum_probs=197.3

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++||+|+||.||++....     +..||+|++.....   ......+.+|+++++.++|+||+++++++...+..++|||
T Consensus         1 ~~ig~g~~g~vy~~~~~~-----~~~~a~K~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   72 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKD-----KTPVAVKTCKEDLP---QELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVME   72 (250)
T ss_pred             CccCCCCCceEEEEEecC-----CcEEEEEecCCcCC---HHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEE
Confidence            479999999999997542     23499999865432   2334567789999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.|++|..++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||++.......    
T Consensus        73 ~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~----  147 (250)
T cd05085          73 LVPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGI----  147 (250)
T ss_pred             CCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccc----
Confidence            999999988765433 458899999999999999999999999999999999999999999999999986431100    


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                ........++..|+|||++.+.
T Consensus       148 ----------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~  169 (250)
T cd05085         148 ----------------------------------------------------------YSSSGLKQIPIKWTAPEALNYG  169 (250)
T ss_pred             ----------------------------------------------------------cccCCCCCCcccccCHHHhccC
Confidence                                                                      0000112345679999999888


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      .++.++|||||||++|++++ |..||.+.........+.....  .....+..+.++|.+||..+|++||    ++.+++
T Consensus       170 ~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----~~~~l~  245 (250)
T cd05085         170 RYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRP----KFSELQ  245 (250)
T ss_pred             CCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCC----CHHHHH
Confidence            88999999999999999998 9999998877776666554321  2234678999999999999999999    577776


Q ss_pred             c
Q 042539          341 E  341 (412)
Q Consensus       341 ~  341 (412)
                      +
T Consensus       246 ~  246 (250)
T cd05085         246 K  246 (250)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2.5e-40  Score=311.96  Aligned_cols=250  Identities=22%  Similarity=0.322  Sum_probs=200.3

Q ss_pred             eeeeccCceEEEEEEEcCCC--CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEE
Q 042539           24 KILGKGAMGTVFLVHDRAAD--PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWA  101 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv  101 (412)
                      +.||+|+||.||+++++...  ...++.+|+|.+.+...   ......+.+|+++++.++||||+++++++..++..|+|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   77 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT---DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYII   77 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc---hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEE
Confidence            46999999999999876543  22345699998865431   22345677799999999999999999999999999999


Q ss_pred             eeccCCCCchhHHHhhC-----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-----CEEEccccc
Q 042539          102 VPYCPGGDLNVLRYKQN-----DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-----HVTLTDFDL  171 (412)
Q Consensus       102 ~e~~~gg~L~~~~~~~~-----~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-----~vkL~DFGl  171 (412)
                      |||+.|++|..++....     ...+++..+..++.|++.||.|||+.+++|+||||+||+++.++     .++|+|||+
T Consensus        78 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          78 MELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             EeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCccc
Confidence            99999999988876532     23478899999999999999999999999999999999999888     899999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++........                                                             .......++
T Consensus       158 ~~~~~~~~~~-------------------------------------------------------------~~~~~~~~~  176 (269)
T cd05044         158 ARDIYKSDYY-------------------------------------------------------------RKEGEGLLP  176 (269)
T ss_pred             cccccccccc-------------------------------------------------------------ccCcccCCC
Confidence            8754211000                                                             001122456


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      ..|+|||++.+..++.++|||||||++|+|++ |..||...+..+....+....  ......+..+.++|.+||..+|.+
T Consensus       177 ~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  256 (269)
T cd05044         177 VRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSE  256 (269)
T ss_pred             ccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCccCCcccchHHHHHHHHHHcCCCccc
Confidence            78999999998889999999999999999998 999998877777666554322  222346788999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    +++++++
T Consensus       257 Rp----~~~~i~~  265 (269)
T cd05044         257 RP----TFDRIQE  265 (269)
T ss_pred             CC----CHHHHHH
Confidence            99    5777654

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=5.5e-40  Score=314.94  Aligned_cols=265  Identities=14%  Similarity=0.158  Sum_probs=191.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHH-------HHHHHHHHHHHHhhcCCCcc
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-------AERRARWEIRVLSRLSHPFL   85 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~-------~~~~~~~Ei~il~~l~hpnI   85 (412)
                      .++.-++|++.+.||+|+||+||+|.+..++. ....+|+|+..........+       .......+...+..+.|+||
T Consensus         7 ~~i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~-~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i   85 (294)
T PHA02882          7 IDITGKEWKIDKLIGCGGFGCVYETQCASDHC-INNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGI   85 (294)
T ss_pred             eccCCCceEEeeEEecCCCceEEEEEEcCCcc-cccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCC
Confidence            34566799999999999999999999876532 12337777643322110000       01112234455667789999


Q ss_pred             ceeeeeEEeCC----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           86 PKLLGSLETDE----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        86 v~l~~~~~~~~----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      ++++++.....    ..+++|+++.. ++..++...  ..+++..++.++.|++.||+|||++||+||||||+|||++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~  162 (294)
T PHA02882         86 PKYYGCGSFKRCRMYYRFILLEKLVE-NTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGN  162 (294)
T ss_pred             CcEEEeeeEecCCceEEEEEEehhcc-CHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCC
Confidence            99999776543    45788888743 444444332  236788999999999999999999999999999999999999


Q ss_pred             CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          162 GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       162 g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      +.++|+|||+|+.+........                                                        ..
T Consensus       163 ~~~~l~DFGla~~~~~~~~~~~--------------------------------------------------------~~  186 (294)
T PHA02882        163 NRGYIIDYGIASHFIIHGKHIE--------------------------------------------------------YS  186 (294)
T ss_pred             CcEEEEEcCCceeeccCCcccc--------------------------------------------------------cc
Confidence            9999999999986532110000                                                        00


Q ss_pred             CCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH-HH--------HHHHHhcCCCCCCCCCh
Q 042539          242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-KE--------TFRNVLMKTPEFVGQRT  312 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~--------~~~~i~~~~~~~~~~~~  312 (412)
                      ........||+.|+|||++.+..++.++|||||||++|||++|.+||.+.+. ..        ...++..........++
T Consensus       187 ~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (294)
T PHA02882        187 KEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANK  266 (294)
T ss_pred             cccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCH
Confidence            1112345799999999999999999999999999999999999999987632 21        12333333344566788


Q ss_pred             HHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          313 ALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       313 ~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+.++++.|+..+|++||    +.+++++
T Consensus       267 ~~~~~~~~~~~~~~~~rp----~~~~l~~  291 (294)
T PHA02882        267 FIYDFIECVTKLSYEEKP----DYDALIK  291 (294)
T ss_pred             HHHHHHHHHHhCCCCCCC----CHHHHHH
Confidence            999999999999999999    5677664

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=6.1e-40  Score=311.34  Aligned_cols=242  Identities=20%  Similarity=0.226  Sum_probs=189.3

Q ss_pred             eeeccCceEEEEEEEcCCC--------------------CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc
Q 042539           25 ILGKGAMGTVFLVHDRAAD--------------------PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF   84 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~--------------------~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn   84 (412)
                      .||+|+||.||++.....+                    ......||+|++....    ......+.+|+.+++.++|||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~~~~~~~~l~h~n   77 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH----RDIALAFFETASLMSQVSHIH   77 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH----HHHHHHHHHHHHHHhcCCCCC
Confidence            6999999999998743211                    1123458999986542    233455677899999999999


Q ss_pred             cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC--
Q 042539           85 LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG--  162 (412)
Q Consensus        85 Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g--  162 (412)
                      |+++++++..+...++|||||.||+|..++... .+.+++..+..++.||+.||+|||++||+||||||+|||++..|  
T Consensus        78 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~  156 (274)
T cd05076          78 LAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKE-KGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLA  156 (274)
T ss_pred             eeeEEEEEEeCCceEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcc
Confidence            999999999999999999999999998776543 34689999999999999999999999999999999999998654  


Q ss_pred             -----CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccc
Q 042539          163 -----HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQ  237 (412)
Q Consensus       163 -----~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (412)
                           .+|++|||++.....                                                            
T Consensus       157 ~~~~~~~kl~d~g~~~~~~~------------------------------------------------------------  176 (274)
T cd05076         157 EGTSPFIKLSDPGVSFTALS------------------------------------------------------------  176 (274)
T ss_pred             cCccceeeecCCcccccccc------------------------------------------------------------
Confidence                 389999998753210                                                            


Q ss_pred             ccCCCCCCcccccCCCCccceeecC-CCCCchhhHHHHHHHHHHHh-hCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHH
Q 042539          238 SFDNGERSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVLMKTPEFVGQRTALT  315 (412)
Q Consensus       238 ~~~~~~~~~~~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell-~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  315 (412)
                             .....++..|+|||.+.+ ..++.++|||||||++|||+ +|..||.+....+....+...........+.+.
T Consensus       177 -------~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (274)
T cd05076         177 -------REERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKKHRLPEPSCKELA  249 (274)
T ss_pred             -------ccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHhccCCCCCCChHHH
Confidence                   011246778999999876 45789999999999999984 799999887655443322222222223457899


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ++|.+||+.+|++||    ++.+++++
T Consensus       250 ~li~~cl~~~p~~Rp----s~~~il~~  272 (274)
T cd05076         250 TLISQCLTYEPTQRP----SFRTILRD  272 (274)
T ss_pred             HHHHHHcccChhhCc----CHHHHHHh
Confidence            999999999999999    57888763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-41  Score=322.58  Aligned_cols=266  Identities=25%  Similarity=0.397  Sum_probs=213.8

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeec--chhh-hhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTL-HAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~--~~~~-~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +--++|.++..||+|||+.||+|.|...+.+    ||+|+-.  |..- ..++...+.+.||.+|.+.|+||.||++|++
T Consensus       460 tLn~RYLlLhLLGrGGFSEVyKAFDl~EqRY----vAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDy  535 (775)
T KOG1151|consen  460 TLNDRYLLLHLLGRGGFSEVYKAFDLTEQRY----VAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDY  535 (775)
T ss_pred             chHHHHHHHHHhccccHHHHHHhcccchhhe----eeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeee
Confidence            3457899999999999999999988765554    9999653  3322 1233456788899999999999999999999


Q ss_pred             EE-eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEcc---CCCEE
Q 042539           92 LE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQ---SGHVT  165 (412)
Q Consensus        92 ~~-~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~---~g~vk  165 (412)
                      |. +.+.+|-|+|||+|.||+.++....  .++|.+|+.|+.||+.||.||....  |||-||||.|||+..   .|.+|
T Consensus       536 fslDtdsFCTVLEYceGNDLDFYLKQhk--lmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIK  613 (775)
T KOG1151|consen  536 FSLDTDSFCTVLEYCEGNDLDFYLKQHK--LMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIK  613 (775)
T ss_pred             eeeccccceeeeeecCCCchhHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeE
Confidence            96 5568999999999999998877654  4999999999999999999999875  999999999999954   47899


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+||||++.+......                                                        +++..+.+
T Consensus       614 ITDFGLSKIMdddSy~--------------------------------------------------------~vdGmeLT  637 (775)
T KOG1151|consen  614 ITDFGLSKIMDDDSYN--------------------------------------------------------SVDGMELT  637 (775)
T ss_pred             eeecchhhhccCCccC--------------------------------------------------------cccceeee
Confidence            9999999987533210                                                        11223445


Q ss_pred             cccccCCCCccceeecCC----CCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHH--HHhc----CCCCCCCCChHH
Q 042539          246 NSFVGTEEYVSPEVVRGD----GHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFR--NVLM----KTPEFVGQRTAL  314 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~----~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~--~i~~----~~~~~~~~~~~~  314 (412)
                      +.+.||.+|++||++.-.    ..+.++||||+|||+|.+++|+-||...-.. +++.  .|+.    ..|.-+..+.++
T Consensus       638 SQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseA  717 (775)
T KOG1151|consen  638 SQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEA  717 (775)
T ss_pred             cccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHH
Confidence            567899999999997532    3488999999999999999999999775332 2222  2232    234456678999


Q ss_pred             HHHHHHhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          315 TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       315 ~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      ++||++||.+.-++|+    ++.++..||||.
T Consensus       718 kaFIRRCLaYRKeDR~----DV~qLA~dpyll  745 (775)
T KOG1151|consen  718 KAFIRRCLAYRKEDRI----DVQQLACDPYLL  745 (775)
T ss_pred             HHHHHHHHHhhhhhhh----hHHHHccCcccc
Confidence            9999999999999999    799999999985

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=7.2e-40  Score=306.74  Aligned_cols=240  Identities=21%  Similarity=0.254  Sum_probs=191.3

Q ss_pred             eeeeccCceEEEEEEEcCCC------CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           24 KILGKGAMGTVFLVHDRAAD------PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~------~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.||+|+||.||++.+..++      ......+++|++.....     ....+.+|+.+++.++|+||+++++++.. ..
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~   74 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHR-----DSLAFFETASLMSQLSHKHLVKLYGVCVR-DE   74 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchh-----hHHHHHHHHHHHHcCCCcchhheeeEEec-CC
Confidence            46999999999999987655      22233478887754321     14667779999999999999999999988 77


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-------CEEEcccc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-------HVTLTDFD  170 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-------~vkL~DFG  170 (412)
                      .++||||+.+|+|..++.... ..++...+..++.||+.||+|||++||+||||||+|||++.++       .+||+|||
T Consensus        75 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg  153 (259)
T cd05037          75 NIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPG  153 (259)
T ss_pred             cEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCC
Confidence            899999999999998876644 2589999999999999999999999999999999999999888       89999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      ++.....                                                                   .....+
T Consensus       154 ~a~~~~~-------------------------------------------------------------------~~~~~~  166 (259)
T cd05037         154 IPITVLS-------------------------------------------------------------------REERVE  166 (259)
T ss_pred             ccccccc-------------------------------------------------------------------cccccc
Confidence            9875421                                                                   112346


Q ss_pred             CCCCccceeecCC--CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGD--GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~--~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      +..|+|||++.+.  .++.++|||||||++|+|++ |..||...+..+..................+.++|.+||..+|.
T Consensus       167 ~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  246 (259)
T cd05037         167 RIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMPDCAELANLINQCWTYDPT  246 (259)
T ss_pred             CCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCCCCCCCCchHHHHHHHHHhccChh
Confidence            6789999999876  67999999999999999998 68889876544433333222211122237899999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    ++.++++
T Consensus       247 ~Rp----t~~~il~  256 (259)
T cd05037         247 KRP----SFRAILR  256 (259)
T ss_pred             hCC----CHHHHHH
Confidence            999    5777764

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=7.5e-40  Score=309.13  Aligned_cols=247  Identities=18%  Similarity=0.287  Sum_probs=191.9

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++||+|+||+||++.....  .....+|+|.+....   .......+.+|+.+++.++|+||+++++.+.+...+|+|||
T Consensus         1 ~~lg~G~fg~v~~~~~~~~--~~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e   75 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRG--MSKARVVVKELRASA---TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLE   75 (269)
T ss_pred             CcCCccCCceEEEEEEecC--CCCeEEEEeecCccC---ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEE
Confidence            4699999999999975432  234458888775432   23344567779999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhh
Q 042539          104 YCPGGDLNVLRYKQND---RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~---~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~  180 (412)
                      |+.+|+|..++.....   ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~  155 (269)
T cd05042          76 FCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDY  155 (269)
T ss_pred             eCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchh
Confidence            9999999988765432   2356788899999999999999999999999999999999999999999999864321100


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                      +                                                             .......++..|+|||++
T Consensus       156 ~-------------------------------------------------------------~~~~~~~~~~~y~aPE~~  174 (269)
T cd05042         156 Y-------------------------------------------------------------ITKDCHAVPLRWLAPELV  174 (269)
T ss_pred             e-------------------------------------------------------------eccCCCCCcccccCHHHH
Confidence            0                                                             001233467789999987


Q ss_pred             cC-------CCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC-C------CCCCChHHHHHHHHhhhhC
Q 042539          261 RG-------DGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP-E------FVGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       261 ~~-------~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~-~------~~~~~~~~~dli~~~L~~d  325 (412)
                      ..       ..++.++|||||||++|||++ |..||......+.+..+..... .      ....+..+.+++..|+ .|
T Consensus       175 ~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d  253 (269)
T cd05042         175 EIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LD  253 (269)
T ss_pred             hhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cC
Confidence            53       346789999999999999998 8999988877766665543321 1      1234678889999998 59


Q ss_pred             CCccCCCCCChhhhhc
Q 042539          326 PVKRLGYLRGACEIKE  341 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~  341 (412)
                      |++||    +++++++
T Consensus       254 p~~Rp----t~~~v~~  265 (269)
T cd05042         254 PETRP----TAEEVHE  265 (269)
T ss_pred             ccccc----CHHHHHH
Confidence            99999    5777664

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1e-39  Score=308.41  Aligned_cols=247  Identities=21%  Similarity=0.291  Sum_probs=190.8

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||.||++.+....  +...+|+|.++....   ......+.+|+.+++.++||||+++++++.+...+++|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~--~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   75 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGY--TPAQVVVKELRVSAS---VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVME   75 (269)
T ss_pred             CcccccCCceEEEEEEcCCC--CceEEEEEecCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEE
Confidence            46999999999999865322  344589998865432   2233457779999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhh
Q 042539          104 YCPGGDLNVLRYKQND---RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~---~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~  180 (412)
                      |+.||+|..++.....   ...++..++.++.|++.||.|||+.|++||||||+||+++.++.+||+|||+++...... 
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~-  154 (269)
T cd05087          76 FCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKED-  154 (269)
T ss_pred             CCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcc-
Confidence            9999999888765321   245677888999999999999999999999999999999999999999999986431100 


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                                                                                  .........|+..|+|||++
T Consensus       155 ------------------------------------------------------------~~~~~~~~~~~~~y~aPE~~  174 (269)
T cd05087         155 ------------------------------------------------------------YYVTPDQLWVPLRWIAPELV  174 (269)
T ss_pred             ------------------------------------------------------------eeecCCCcCCcccccCHhHh
Confidence                                                                        00111234678899999998


Q ss_pred             cCC-------CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC------CCC-CCCChHHHHHHHHhhhhC
Q 042539          261 RGD-------GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT------PEF-VGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       261 ~~~-------~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~------~~~-~~~~~~~~dli~~~L~~d  325 (412)
                      .+.       .++.++|+|||||++|||++ |..||......+.........      +.. ...++.+.++|++|+ .+
T Consensus       175 ~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~  253 (269)
T cd05087         175 DEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQ  253 (269)
T ss_pred             ccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cC
Confidence            643       35789999999999999996 999998876665544333211      111 134678999999998 68


Q ss_pred             CCccCCCCCChhhhhc
Q 042539          326 PVKRLGYLRGACEIKE  341 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~  341 (412)
                      |++||    +++++..
T Consensus       254 P~~Rp----t~~~l~~  265 (269)
T cd05087         254 PEQRP----SAEEVHL  265 (269)
T ss_pred             cccCC----CHHHHHH
Confidence            99999    5777763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.2e-39  Score=306.27  Aligned_cols=250  Identities=19%  Similarity=0.254  Sum_probs=195.1

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE-eCCeEEEEe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE-TDEFLAWAV  102 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~-~~~~~~lv~  102 (412)
                      +.||+|+||.||+|.+..... ....||+|.+....   .......+.+|+.+++.++||||+++++++. .+...+++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~-~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~   76 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDG-QKIHCAVKSLNRIT---DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVL   76 (262)
T ss_pred             CcccccCCceEEEEEEecCCC-ceEEEEEEecCccC---CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEE
Confidence            468999999999998754332 34559999885422   1223456677999999999999999999765 455689999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE  182 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~  182 (412)
                      ||+.+|+|..++.... ..+++..+..++.|++.||.|||+.||+||||||+|||++.++.+||+|||+++.+...... 
T Consensus        77 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~-  154 (262)
T cd05058          77 PYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYY-  154 (262)
T ss_pred             ecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcce-
Confidence            9999999988876533 34677888899999999999999999999999999999999999999999998754211000 


Q ss_pred             hhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC
Q 042539          183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG  262 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~  262 (412)
                                                                                .........++..|+|||.+.+
T Consensus       155 ----------------------------------------------------------~~~~~~~~~~~~~y~aPE~~~~  176 (262)
T cd05058         155 ----------------------------------------------------------SVHNHTGAKLPVKWMALESLQT  176 (262)
T ss_pred             ----------------------------------------------------------eecccccCcCCccccChhHhcc
Confidence                                                                      0000112345778999999988


Q ss_pred             CCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCCCCChhhh
Q 042539          263 DGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEI  339 (412)
Q Consensus       263 ~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~  339 (412)
                      ..++.++|||||||++|||++ |.+||...+..+....+......  ....++.+.+++.+||..+|++||    ++.++
T Consensus       177 ~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp----~~~~i  252 (262)
T cd05058         177 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRP----TFSEL  252 (262)
T ss_pred             CccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCC----CHHHH
Confidence            889999999999999999999 67788887776666665543321  123468899999999999999999    57777


Q ss_pred             hc
Q 042539          340 KE  341 (412)
Q Consensus       340 l~  341 (412)
                      ++
T Consensus       253 l~  254 (262)
T cd05058         253 VS  254 (262)
T ss_pred             HH
Confidence            64

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-39  Score=304.06  Aligned_cols=244  Identities=21%  Similarity=0.287  Sum_probs=199.1

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++||+|+||.||+|.+.. +..    ||+|.+......   .....+.+|++++++++|+||+++++++.+....++|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~----v~~K~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   72 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTE----VAVKTCRSTLPP---DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVME   72 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCc----EEEEeccccCCH---HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEE
Confidence            479999999999998865 444    999998765432   345567789999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      |+.|++|..++.... ..+++..+..++.|++.||.|||++|++||||||+|||++.++.+||+|||+++.......   
T Consensus        73 ~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~---  148 (251)
T cd05041          73 LVPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIY---  148 (251)
T ss_pred             cCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcc---
Confidence            999999988876533 3578999999999999999999999999999999999999999999999999865421000   


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                ........++..|+|||.+.+.
T Consensus       149 ----------------------------------------------------------~~~~~~~~~~~~y~~PE~~~~~  170 (251)
T cd05041         149 ----------------------------------------------------------TVSDGLKQIPIKWTAPEALNYG  170 (251)
T ss_pred             ----------------------------------------------------------eeccccCcceeccCChHhhccC
Confidence                                                                      0000112235679999999888


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      .++.++|+|||||++|+|++ |..||.+.........+....  ......+..+.++|.+||+.+|.+||    ++.+++
T Consensus       171 ~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----~~~ell  246 (251)
T cd05041         171 RYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRP----SFSEIY  246 (251)
T ss_pred             CCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCc----CHHHHH
Confidence            89999999999999999998 899998887666655554332  12234568999999999999999999    688887


Q ss_pred             c
Q 042539          341 E  341 (412)
Q Consensus       341 ~  341 (412)
                      +
T Consensus       247 ~  247 (251)
T cd05041         247 N  247 (251)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=4.1e-40  Score=305.85  Aligned_cols=233  Identities=27%  Similarity=0.374  Sum_probs=186.9

Q ss_pred             cCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeeccCCC
Q 042539           29 GAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGG  108 (412)
Q Consensus        29 G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg  108 (412)
                      |.||+||+|+++.++..    ||+|++.+...         ..+|...+....||||+++++++.+.+..|+||||+.||
T Consensus         4 g~~~~v~~~~~~~~~~~----~~~K~i~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   70 (237)
T cd05576           4 GVIDKVLLVMDTRTQQT----FILKGLRKSSE---------YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGG   70 (237)
T ss_pred             cccceEEEEEEccCCcE----EEEEeecchhh---------hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCC
Confidence            89999999999876554    99999976531         112444555667999999999999999999999999999


Q ss_pred             CchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccC
Q 042539          109 DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN  188 (412)
Q Consensus       109 ~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~  188 (412)
                      +|.+++....  .+++..+..++.|++.||.|||++||+||||||+||+++.+|.++|+|||++.....           
T Consensus        71 ~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~-----------  137 (237)
T cd05576          71 KLWSHISKFL--NIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVED-----------  137 (237)
T ss_pred             CHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhcccc-----------
Confidence            9988776543  489999999999999999999999999999999999999999999999998754311           


Q ss_pred             CCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCch
Q 042539          189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFA  268 (412)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~  268 (412)
                                                                             ......++..|+|||.+.+..++.+
T Consensus       138 -------------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~  162 (237)
T cd05576         138 -------------------------------------------------------SCDGEAVENMYCAPEVGGISEETEA  162 (237)
T ss_pred             -------------------------------------------------------ccccCCcCccccCCcccCCCCCCch
Confidence                                                                   0112345678999999988888999


Q ss_pred             hhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccCCCC-CChhhhhcCCCC
Q 042539          269 VDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFF  345 (412)
Q Consensus       269 ~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~-~~~~e~l~h~ff  345 (412)
                      +|+||+||++|+|++|+.||.........   ..........+..+++||.+||+.||.+|++.. .+++++++||||
T Consensus       163 ~DvwslG~il~el~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         163 CDWWSLGAILFELLTGKTLVECHPSGINT---HTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             hhHHHHHHHHHHHHHCcchhhcCchhccc---ccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence            99999999999999999988653221100   000011124578899999999999999999641 246999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.6e-39  Score=307.08  Aligned_cols=247  Identities=19%  Similarity=0.282  Sum_probs=191.4

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      +.||+|+||+||+++.....  ....+++|.++...   .......+.+|+.+++.++||||+++++.+.+....|+|||
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~--~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e   75 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDT--GVARVVVKELKANA---SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFE   75 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCC--CcceEEEEEecCCC---ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEe
Confidence            46999999999998764332  22335677665432   22345677889999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhh
Q 042539          104 YCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF  181 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~  181 (412)
                      ||.||+|..++....  ...+++..++.++.||+.||+|||+++++||||||+|||++.++.+||+|||++.......  
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~--  153 (268)
T cd05086          76 YCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED--  153 (268)
T ss_pred             cCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcch--
Confidence            999999988876542  2236777888999999999999999999999999999999999999999999875321100  


Q ss_pred             hhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeec
Q 042539          182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR  261 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~  261 (412)
                                                                                 ........+|+..|+|||++.
T Consensus       154 -----------------------------------------------------------~~~~~~~~~~~~~y~aPE~~~  174 (268)
T cd05086         154 -----------------------------------------------------------YIETEDDKCVPLRWLAPELVG  174 (268)
T ss_pred             -----------------------------------------------------------hhhcccCCcCcccccCchhcc
Confidence                                                                       001112456889999999985


Q ss_pred             C-------CCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC------CCC-CCCChHHHHHHHHhhhhCC
Q 042539          262 G-------DGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT------PEF-VGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       262 ~-------~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~------~~~-~~~~~~~~dli~~~L~~dP  326 (412)
                      .       ..++.++|||||||++|||++ |..||...+..+.+..+....      +.. ...++.+.+++..|| .+|
T Consensus       175 ~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P  253 (268)
T cd05086         175 EFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSP  253 (268)
T ss_pred             cccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCc
Confidence            3       234779999999999999996 688998877777766655432      111 235688999999999 789


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||    +++++++
T Consensus       254 ~~Rp----~~~~i~~  264 (268)
T cd05086         254 EKRA----TAEEVHR  264 (268)
T ss_pred             ccCC----CHHHHHH
Confidence            9999    5777754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.4e-39  Score=307.57  Aligned_cols=254  Identities=18%  Similarity=0.286  Sum_probs=201.4

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC---
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE---   96 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~---   96 (412)
                      |.+.++||+|+||.||+|.++..+ .+++.||||++......  ......+.+|+++++.++||||+++++++...+   
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~-~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   77 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSED-GSFQKVAVKMLKADIFS--SSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKG   77 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccC-CCceEEEEEEeccccCC--hHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCC
Confidence            678899999999999999876432 24566999999654322  223456778999999999999999999886532   


Q ss_pred             ---eEEEEeeccCCCCchhHHHhhC----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           97 ---FLAWAVPYCPGGDLNVLRYKQN----DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        97 ---~~~lv~e~~~gg~L~~~~~~~~----~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                         ..+++++|+.+|+|..++....    ...++...+..++.|++.||+|||++||+||||||+||+++.++.+||+||
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          78 RLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             cccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcc
Confidence               2478899999999987764322    124788999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.......                                                             ........
T Consensus       158 g~~~~~~~~~~-------------------------------------------------------------~~~~~~~~  176 (273)
T cd05074         158 GLSKKIYSGDY-------------------------------------------------------------YRQGCASK  176 (273)
T ss_pred             cccccccCCcc-------------------------------------------------------------eecCCCcc
Confidence            99875421100                                                             00011224


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP  326 (412)
                      +++.|++||.+.+..++.++|||||||++|+|++ |.+||.+.+..+.+..+.....  ..+..+..+.+++.+||..+|
T Consensus       177 ~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p  256 (273)
T cd05074         177 LPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEP  256 (273)
T ss_pred             CchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCh
Confidence            5678999999998888999999999999999998 9999998887777666654322  223466899999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||    ++.+++.
T Consensus       257 ~~Rp----s~~~~~~  267 (273)
T cd05074         257 KCRP----SFQHLRD  267 (273)
T ss_pred             hhCc----CHHHHHH
Confidence            9999    5777764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-39  Score=342.36  Aligned_cols=261  Identities=22%  Similarity=0.338  Sum_probs=218.6

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCC-CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPT-ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~-~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +.+..+...+++.||+|+||.||.+........ ....||||.+++..   .......+++|+.+|+.++|||||+++++
T Consensus       687 p~v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~---~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv  763 (1025)
T KOG1095|consen  687 PEVPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLS---SEQEVSDFLKEALLMSKFDHPNIVSLIGV  763 (1025)
T ss_pred             ccCChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccC---CHHHHHHHHHHHHHHhcCCCcceeeEEEe
Confidence            457788999999999999999999876654432 14558999997653   23456678889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhC-----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQN-----DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~-----~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ..+....+|++|||.||||..+++...     ...++......++.+|+.|..||+++++|||||..+|+|++....|||
T Consensus       764 ~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKI  843 (1025)
T KOG1095|consen  764 CLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKI  843 (1025)
T ss_pred             ecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEE
Confidence            999999999999999999999988752     235889999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+|+.+.+...|....                                                          +  
T Consensus       844 aDFGlArDiy~~~yyr~~~----------------------------------------------------------~--  863 (1025)
T KOG1095|consen  844 ADFGLARDIYDKDYYRKHG----------------------------------------------------------E--  863 (1025)
T ss_pred             cccchhHhhhhchheeccC----------------------------------------------------------c--
Confidence            9999999775544432211                                                          0  


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~  323 (412)
                       ..-...|||||.+....++.++|||||||+|||+++ |..||.+.+..+++..++.+.  +....+++.+.++|..||+
T Consensus       864 -a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~  942 (1025)
T KOG1095|consen  864 -AMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWK  942 (1025)
T ss_pred             -cccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHcc
Confidence             112347999999999889999999999999999997 999999999999888676544  3344678899999999999


Q ss_pred             hCCCccCCCCCChhhhhc
Q 042539          324 KDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~  341 (412)
                      .+|++||+|    ..|++
T Consensus       943 ~~pe~RP~F----~~i~~  956 (1025)
T KOG1095|consen  943 HDPEDRPSF----RTIVE  956 (1025)
T ss_pred             CChhhCccH----HHHHh
Confidence            999999964    55554

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.5e-39  Score=308.68  Aligned_cols=258  Identities=22%  Similarity=0.294  Sum_probs=204.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      ..++|++++.||+|+||.||+|+....+..++..||+|++......   .....+.+|+++++.++|+||+++++++.. 
T Consensus         2 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~   78 (284)
T cd05038           2 EKRHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE---QHRSDFEREIEILRTLDHENIVKYKGVCEKP   78 (284)
T ss_pred             chhhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch---HHHHHHHHHHHHHHhCCCCChheEEeeeecC
Confidence            4578999999999999999999876554445667999999765432   345667889999999999999999999887 


Q ss_pred             -CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           95 -DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        95 -~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                       ....+++|||+.|++|..++.... ..+++..+..++.|++.||+|||++||+|+||||+||+++.++.++|+|||++.
T Consensus        79 ~~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  157 (284)
T cd05038          79 GGRSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAK  157 (284)
T ss_pred             CCCceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccc
Confidence             568999999999999988876543 358999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ........                                                            ........++..
T Consensus       158 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~  177 (284)
T cd05038         158 VLPEDKDY------------------------------------------------------------YYVKEPGESPIF  177 (284)
T ss_pred             ccccCCcc------------------------------------------------------------eeccCCCCCccc
Confidence            65311100                                                            000011234567


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH--------------HHHHHhcCC---CCCCCCChHHHH
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE--------------TFRNVLMKT---PEFVGQRTALTD  316 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~--------------~~~~i~~~~---~~~~~~~~~~~d  316 (412)
                      |+|||.+.+..++.++|+|||||++|||++|..||.......              .....+...   +.....+.++.+
T Consensus       178 ~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (284)
T cd05038         178 WYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYD  257 (284)
T ss_pred             ccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHH
Confidence            999999988888999999999999999999999986542211              112222222   222345678999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhc
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |+.+||..+|.+||    ++.++++
T Consensus       258 li~~cl~~~p~~Rp----t~~ei~~  278 (284)
T cd05038         258 LMKLCWEAEPQDRP----SFADLIL  278 (284)
T ss_pred             HHHHHhccChhhCC----CHHHHHH
Confidence            99999999999999    5787764

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=2.7e-39  Score=305.14  Aligned_cols=252  Identities=24%  Similarity=0.354  Sum_probs=203.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh------hhHHHHHHHHHHHHHHhh-cCCCccceeeee
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH------AKHEAERRARWEIRVLSR-LSHPFLPKLLGS   91 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~------~~~~~~~~~~~Ei~il~~-l~hpnIv~l~~~   91 (412)
                      +|++.+.||+|+||.||++.++..   ++..+|+|.+......      ........+.+|+.++.+ ++|+||++++++
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~   77 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNN---GQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKT   77 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCC---CCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEee
Confidence            588999999999999999998762   2345999988643321      122344556678888875 689999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEcc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      +..++..+++|||+.|++|..++..  .....+++..++.++.|++.||.|||+ .|++|+||||+||+++.++.+||+|
T Consensus        78 ~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          78 FLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             EccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEec
Confidence            9999999999999999999877643  233458999999999999999999996 6899999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||++......                                                                ......
T Consensus       158 fg~~~~~~~~----------------------------------------------------------------~~~~~~  173 (269)
T cd08528         158 FGLAKQKQPE----------------------------------------------------------------SKLTSV  173 (269)
T ss_pred             ccceeecccc----------------------------------------------------------------cccccc
Confidence            9998654211                                                                012244


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHHHHhhhhC
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli~~~L~~d  325 (412)
                      .|+..|+|||.+.+..++.++|+|||||++|+|++|++||...+.......+......   ....+..+.++|.+||+.|
T Consensus       174 ~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~  253 (269)
T cd08528         174 VGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPD  253 (269)
T ss_pred             cCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCC
Confidence            6888999999999888899999999999999999999999887766666555543321   1245789999999999999


Q ss_pred             CCccCCCCCChhhhhc
Q 042539          326 PVKRLGYLRGACEIKE  341 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~  341 (412)
                      |.+||    ++.|+.+
T Consensus       254 p~~Rp----~~~e~~~  265 (269)
T cd08528         254 AEARP----DIIQVSA  265 (269)
T ss_pred             CccCC----CHHHHHH
Confidence            99999    5677654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.4e-42  Score=304.87  Aligned_cols=261  Identities=26%  Similarity=0.376  Sum_probs=207.6

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      ....|+-+.+||+|.||.||+|+.+.++..    ||+|.+-.++  .++..-...++|+++|..|+|+|++.+++.+.. 
T Consensus        15 ~~~~yek~~kigqGtfgeVFkAr~~n~~kk----valkkvlmen--eKeGfpitalreikiL~~lkHenv~nliEic~tk   88 (376)
T KOG0669|consen   15 EVSKYEKLAKIGQGTFGEVFKARSKNTGKK----VALKKVLMEN--EKEGFPITALREIKILQLLKHENVVNLIEICRTK   88 (376)
T ss_pred             cchHHHHHHhcCCchHHHHHHHhhcCccch----hHHHHHHHhc--cccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhc
Confidence            456788889999999999999998876654    8988764332  233344566789999999999999999987642 


Q ss_pred             -------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           95 -------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        95 -------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                             ...+|+|+.+|+. ||..++... ..+|+..+++.++.+++.||.|+|+..|+|||+|++|+||+.+|.+||+
T Consensus        89 ~Tp~~r~r~t~ylVf~~ceh-DLaGlLsn~-~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklA  166 (376)
T KOG0669|consen   89 ATPTNRDRATFYLVFDFCEH-DLAGLLSNR-KVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLA  166 (376)
T ss_pred             cCCcccccceeeeeHHHhhh-hHHHHhcCc-cccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEee
Confidence                   2359999999976 565555433 2459999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++.+.....                                                           ....+...
T Consensus       167 DFGlar~fs~~~n-----------------------------------------------------------~~kprytn  187 (376)
T KOG0669|consen  167 DFGLARAFSTSKN-----------------------------------------------------------VVKPRYTN  187 (376)
T ss_pred             ccccccceecccc-----------------------------------------------------------cCCCCccc
Confidence            9999987642211                                                           01122334


Q ss_pred             cccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CC------C-------------
Q 042539          248 FVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KT------P-------------  305 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~------~-------------  305 (412)
                      .+-|.+|++||.+.|. .|+.+.|||+.|||+.||.+|.+.|.+++...++..|..  +.      |             
T Consensus       188 rvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~  267 (376)
T KOG0669|consen  188 RVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIEL  267 (376)
T ss_pred             ceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccC
Confidence            5679999999999985 589999999999999999999999999988887665531  10      0             


Q ss_pred             -CCC--------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          306 -EFV--------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       306 -~~~--------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                       +.+              .-++++.||+.+||..||.+|+    ++++++.|.||..
T Consensus       268 ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~----~ad~alnh~~F~k  320 (376)
T KOG0669|consen  268 EPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRI----DADQALNHDFFWK  320 (376)
T ss_pred             CCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCc----chHhhhchhhhhc
Confidence             000              1124788999999999999999    7999999999964

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-39  Score=330.72  Aligned_cols=257  Identities=26%  Similarity=0.451  Sum_probs=215.5

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      .-+-|+|+.+||.|.||+||+++.+.++..    .|+|++....-     ....+..|.+||+... |||++.+|++|..
T Consensus        17 p~d~~ei~evig~Gtygkv~k~k~~~~~~~----aa~kI~~~~~d-----~deEiE~eynil~~~~~hpnv~~fyg~~~k   87 (953)
T KOG0587|consen   17 PADIFEIIEVIGNGTYGKVYKGRHVKTGQL----AAIKIMDPTED-----EEEEIELEYNMLKKYSHHPNVATFYGAFIK   87 (953)
T ss_pred             CCCccEEEEEEeeccceeEEEEeeeecCce----eeeEeecCCcc-----ccHHHHHHHHHHHhccCCCCcceEEEEEEE
Confidence            346799999999999999999998886554    88888755432     2233444889999996 9999999999863


Q ss_pred             -----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           95 -----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        95 -----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                           ++.+|||||||.||+..+++..-.+..+.|..+..|+++++.||.+||.+.++|||||=.|||++.+|.|||+||
T Consensus        88 ~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDF  167 (953)
T KOG0587|consen   88 KDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDF  167 (953)
T ss_pred             ecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeee
Confidence                 468999999999999999988777778999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |.+..+.                                                               ..-.+.++++
T Consensus       168 GvSaQld---------------------------------------------------------------sT~grRnT~i  184 (953)
T KOG0587|consen  168 GVSAQLD---------------------------------------------------------------STVGRRNTFI  184 (953)
T ss_pred             eeeeeee---------------------------------------------------------------cccccccCcC
Confidence            9997653                                                               1234667899


Q ss_pred             cCCCCccceeecCC-----CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-CC---CCCChHHHHHHHH
Q 042539          250 GTEEYVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-EF---VGQRTALTDLIQR  320 (412)
Q Consensus       250 gt~~Y~APE~l~~~-----~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~~---~~~~~~~~dli~~  320 (412)
                      |||.|||||++...     .|+..+|+||||++..||.-|.+|+.+.-....+-.|-.+.| .+   ...++++.|||..
T Consensus       185 GtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~  264 (953)
T KOG0587|consen  185 GTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFIST  264 (953)
T ss_pred             CCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHH
Confidence            99999999998643     468899999999999999999999988766554444443333 22   2356889999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      ||.+|-++||    ...+++.|||++..
T Consensus       265 cL~Kd~e~RP----~~~~ll~hpFi~e~  288 (953)
T KOG0587|consen  265 CLVKDYEQRP----STEELLKHPFITEQ  288 (953)
T ss_pred             HHhhccccCc----chhhhccCCccccc
Confidence            9999999999    58999999999843

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-40  Score=331.89  Aligned_cols=242  Identities=33%  Similarity=0.499  Sum_probs=194.6

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE-   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~-   96 (412)
                      ..|..-+.||+||||.||+++++.+|..    ||||++++... .+  ...+..+|+++|++++|+|||+++++-++.. 
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~----vAvK~~~~~~~-~r--~~e~~~~EieilkKLnh~NIVk~f~iee~~~~   85 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRL----VAVKTFNKESS-LR--PRERWCREIEILKKLNHPNIVKLFDIEETKFL   85 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccc----hhHHhhhhhcc-cc--hHHHHHHHHHHHHHcCchhhhhhcccCCcccc
Confidence            4566778899999999999988876655    99999977542 11  2345566999999999999999999876544 


Q ss_pred             -----eEEEEeeccCCCCchhHHHh-hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC--CC--EEE
Q 042539           97 -----FLAWAVPYCPGGDLNVLRYK-QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS--GH--VTL  166 (412)
Q Consensus        97 -----~~~lv~e~~~gg~L~~~~~~-~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~--g~--vkL  166 (412)
                           .-.+|||||.||||...+.. ++..+|+|.++..++..++.||.|||++|||||||||.||++-..  |+  -||
T Consensus        86 ~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKL  165 (732)
T KOG4250|consen   86 GLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKL  165 (732)
T ss_pred             CcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEee
Confidence                 46899999999999877654 344579999999999999999999999999999999999998543  33  599


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||.|+.+.                                                                ++....
T Consensus       166 tDfG~Arel~----------------------------------------------------------------d~s~~~  181 (732)
T KOG4250|consen  166 TDFGAARELD----------------------------------------------------------------DNSLFT  181 (732)
T ss_pred             ecccccccCC----------------------------------------------------------------CCCeee
Confidence            9999998763                                                                445667


Q ss_pred             ccccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCC----CCHHHHHHHHhcCCCCC--------------
Q 042539          247 SFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRG----KNRKETFRNVLMKTPEF--------------  307 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~----~~~~~~~~~i~~~~~~~--------------  307 (412)
                      +++||+.|.+||++.. ..|+..+|.|||||++|+++||..||..    .+..++..++..+.+.-              
T Consensus       182 S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~~eNgpv~  261 (732)
T KOG4250|consen  182 SLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQEEENGPVE  261 (732)
T ss_pred             eecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEeeecccCCcee
Confidence            8999999999999984 7789999999999999999999999954    23344555555433211              


Q ss_pred             -----C---CCC----hHHHHHHHHhhhhCCCccC
Q 042539          308 -----V---GQR----TALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       308 -----~---~~~----~~~~dli~~~L~~dP~~R~  330 (412)
                           +   ..+    ..+..++..+|+.+|.+|.
T Consensus       262 ~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~  296 (732)
T KOG4250|consen  262 WSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRG  296 (732)
T ss_pred             eeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhC
Confidence                 1   112    3466789999999999998

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.9e-40  Score=342.41  Aligned_cols=271  Identities=27%  Similarity=0.430  Sum_probs=205.3

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +--+.+|+.++.||+||||.||+|+++-.+..    ||||.|....   ......++.+|+.+|++|+|||||++|..|.
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~----YAIKKIpl~~---s~~~~skI~rEVk~LArLnHpNVVRYysAWV  547 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGRE----YAIKKIPLKA---SDKLYSKILREVKLLARLNHPNVVRYYSAWV  547 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchh----hhhhhccCch---HHHHHHHHHHHHHHHhhcCCcceeeeehhhh
Confidence            34567899999999999999999999875554    9999996543   3456677888999999999999999973210


Q ss_pred             -----------------------------------------------------------e--------------------
Q 042539           94 -----------------------------------------------------------T--------------------   94 (412)
Q Consensus        94 -----------------------------------------------------------~--------------------   94 (412)
                                                                                 +                    
T Consensus       548 Es~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg  627 (1351)
T KOG1035|consen  548 ESTAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDG  627 (1351)
T ss_pred             ccCCccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccc
Confidence                                                                       0                    


Q ss_pred             --------------------------------C--------CeEEEEeeccCCCCchhHHHhhCCCCC--CHHHHHHHHH
Q 042539           95 --------------------------------D--------EFLAWAVPYCPGGDLNVLRYKQNDRVF--SPSVIRFYLS  132 (412)
Q Consensus        95 --------------------------------~--------~~~~lv~e~~~gg~L~~~~~~~~~~~l--~~~~~~~~~~  132 (412)
                                                      +        ..+||.||||+...+..++....   +  ....++.+++
T Consensus       628 ~~~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~---~~~~~d~~wrLFr  704 (1351)
T KOG1035|consen  628 RNLSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNH---FNSQRDEAWRLFR  704 (1351)
T ss_pred             cccccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcc---cchhhHHHHHHHH
Confidence                                            0        13799999998877776665433   4  4788999999


Q ss_pred             HHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhc
Q 042539          133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLH  212 (412)
Q Consensus       133 qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (412)
                      ||+.||.|+|+.|||||||||.||+++..+.|||+|||+|+..........+..                          
T Consensus       705 eIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~--------------------------  758 (1351)
T KOG1035|consen  705 EILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDL--------------------------  758 (1351)
T ss_pred             HHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhcc--------------------------
Confidence            999999999999999999999999999999999999999987421111100000                          


Q ss_pred             cCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCC---CCchhhHHHHHHHHHHHhhCCCCCC
Q 042539          213 ALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG---HEFAVDWWALGILTYEMLYGTTPFR  289 (412)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~---~~~~~DiwSlGvil~ell~g~~Pf~  289 (412)
                           +...              ...-.+....++.+||.-|+|||++.+..   |+.++|+||||+|+|||++   ||.
T Consensus       759 -----~~~~--------------~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~  816 (1351)
T KOG1035|consen  759 -----SFST--------------NRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFG  816 (1351)
T ss_pred             -----Cccc--------------cccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCC
Confidence                 0000              00001223445789999999999998754   9999999999999999996   465


Q ss_pred             C-CCHHHHHHHHhcCCCCCC-----CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          290 G-KNRKETFRNVLMKTPEFV-----GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       290 ~-~~~~~~~~~i~~~~~~~~-----~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      . ..+..++.++..+..+.+     ...+.-+.+|+.||+.||.+||    ||.|+|++.||.
T Consensus       817 TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRP----tA~eLL~s~llp  875 (1351)
T KOG1035|consen  817 TSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRP----TATELLNSELLP  875 (1351)
T ss_pred             chHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCC----CHHHHhhccCCC
Confidence            4 344455666554443333     1235677899999999999999    799999999998

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=1.9e-40  Score=319.93  Aligned_cols=255  Identities=22%  Similarity=0.374  Sum_probs=206.8

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC------Cccce
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH------PFLPK   87 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h------pnIv~   87 (412)
                      ++--.+|.+....|+|-|++|..|++...+..    ||||+|....+     ..+.-++|++||++|+.      -|+++
T Consensus       428 E~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~----vAiKIIRnNE~-----M~KtGl~EleiLkKL~~AD~Edk~Hclr  498 (752)
T KOG0670|consen  428 ELLDSRYEVQGYTGKGVFSTVVRARDQARGQE----VAIKIIRNNEV-----MHKTGLKELEILKKLNDADPEDKFHCLR  498 (752)
T ss_pred             hhhcceeEEEeccccceeeeeeeccccCCCCe----eEEEEeecchH-----HhhhhhHHHHHHHHhhccCchhhhHHHH
Confidence            44456899999999999999999999887664    99999976543     33445569999999973      38999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEE
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVT  165 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vk  165 (412)
                      |+-.|...+++|||+|-+ ...|..++..-+ +-.|....++.|+.|+..||..|-..||+|.||||+|||++.+ ..+|
T Consensus       499 l~r~F~hknHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLK  577 (752)
T KOG0670|consen  499 LFRHFKHKNHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILK  577 (752)
T ss_pred             HHHHhhhcceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceee
Confidence            999999999999999988 456666665543 3358899999999999999999999999999999999999987 4679


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |||||.|.....+                                                                 ..
T Consensus       578 LCDfGSA~~~~en-----------------------------------------------------------------ei  592 (752)
T KOG0670|consen  578 LCDFGSASFASEN-----------------------------------------------------------------EI  592 (752)
T ss_pred             eccCccccccccc-----------------------------------------------------------------cc
Confidence            9999998654221                                                                 11


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-----------------
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-----------------  308 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-----------------  308 (412)
                      +-+.-+.-|.|||++.|.+|+...|+||+||+||||+||+..|+|.+...+++-.+.....++                 
T Consensus       593 tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d  672 (752)
T KOG0670|consen  593 TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQD  672 (752)
T ss_pred             cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccc
Confidence            122345679999999999999999999999999999999999999887766554432111110                 


Q ss_pred             -------------------------------------CCC-------hHHHHHHHHhhhhCCCccCCCCCChhhhhcCCC
Q 042539          309 -------------------------------------GQR-------TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       309 -------------------------------------~~~-------~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~f  344 (412)
                                                           ..+       ..++||+.+||..||++|+    ++.++|+|||
T Consensus       673 ~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRi----t~nqAL~HpF  748 (752)
T KOG0670|consen  673 LNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRI----TVNQALKHPF  748 (752)
T ss_pred             cceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcC----CHHHHhcCCc
Confidence                                                 011       3588999999999999999    6999999999


Q ss_pred             CCC
Q 042539          345 FKG  347 (412)
Q Consensus       345 f~~  347 (412)
                      |.+
T Consensus       749 i~~  751 (752)
T KOG0670|consen  749 ITE  751 (752)
T ss_pred             ccC
Confidence            974

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-40  Score=301.84  Aligned_cols=257  Identities=26%  Similarity=0.462  Sum_probs=210.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .......+|.-++.+|.|+- .|..|.|.-.    +++||+|.+....  ....-.++..+|..++..++|+||++++.+
T Consensus        11 s~ftv~~Ry~nL~p~~~g~~-~v~~a~D~v~----~~~v~ikk~~~pf--~n~~~akra~rel~l~~~v~~~nii~l~n~   83 (369)
T KOG0665|consen   11 STFTVPKRYVNLKPIGSGAQ-IVVAAFDQVL----GRPVAIKKLSRPF--QNQTHAKRAYRELKLMKCVNHKNIISLLNV   83 (369)
T ss_pred             cceeeeeeeeeecccCCCCc-eEEecchhhc----cCceehhhhcCcc--ccCccchhhhhhhhhhhhhcccceeeeeec
Confidence            33456679999999999999 7777666554    4459999886652  334567888999999999999999999999


Q ss_pred             EEeC------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEE
Q 042539           92 LETD------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT  165 (412)
Q Consensus        92 ~~~~------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vk  165 (412)
                      |.-.      ..+|+|||++. .+|...+..+    ++-..++.++.|+++|++|||+.||+||||||+||++..++.+|
T Consensus        84 ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~~e----lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lK  158 (369)
T KOG0665|consen   84 FTPQKTLEEFQEVYLVMELMD-ANLCQVILME----LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLK  158 (369)
T ss_pred             cCccccHHHHHhHHHHHHhhh-hHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhhee
Confidence            9644      36899999994 4666666533    67889999999999999999999999999999999999999999


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|||+|+...                                                                ..-+.
T Consensus       159 i~dfg~ar~e~----------------------------------------------------------------~~~~m  174 (369)
T KOG0665|consen  159 ILDFGLARTED----------------------------------------------------------------TDFMM  174 (369)
T ss_pred             eccchhhcccC----------------------------------------------------------------ccccc
Confidence            99999997531                                                                11234


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC------------------
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP------------------  305 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~------------------  305 (412)
                      +-++.|..|.|||++.+.+|...+||||+|||+.||++|...|+|.+.-+++.++...  .+                  
T Consensus       175 tpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~  254 (369)
T KOG0665|consen  175 TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVEN  254 (369)
T ss_pred             CchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhc
Confidence            4568899999999999999999999999999999999999999998877766555421  10                  


Q ss_pred             --C---------CC------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          306 --E---------FV------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       306 --~---------~~------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                        .         ++            .....++|++.+||..||++|+    +++++|.|||++  -|
T Consensus       255 ~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Ri----sv~daL~HPY~~--vw  316 (369)
T KOG0665|consen  255 RPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRI----SVDDALRHPYIK--VW  316 (369)
T ss_pred             ChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcc----cHHHHhcCCeee--ee
Confidence              0         01            1124689999999999999999    599999999999  55

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=7.8e-39  Score=331.34  Aligned_cols=265  Identities=19%  Similarity=0.205  Sum_probs=183.9

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .+.+..++|++.+.||+|+||+||+|.+..+....+..||+|.+.....   .+.   ...|  .+....+.+++.++..
T Consensus       126 ~~~~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~---~e~---~~~e--~l~~~~~~~~~~~~~~  197 (566)
T PLN03225        126 RPSFKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA---VEI---WMNE--RVRRACPNSCADFVYG  197 (566)
T ss_pred             CCCCccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch---hHH---HHHH--HHHhhchhhHHHHHHh
Confidence            5677889999999999999999999999876333456699998854321   000   0001  1122222233322222


Q ss_pred             ------EEeCCeEEEEeeccCCCCchhHHHhhCC------------------CCCCHHHHHHHHHHHHHHHHHHHHcCce
Q 042539           92 ------LETDEFLAWAVPYCPGGDLNVLRYKQND------------------RVFSPSVIRFYLSEIICAIEHLHNMGIA  147 (412)
Q Consensus        92 ------~~~~~~~~lv~e~~~gg~L~~~~~~~~~------------------~~l~~~~~~~~~~qi~~aL~yLH~~~ii  147 (412)
                            ...+..+++||||+.+++|..++.....                  ....+..++.++.||+.||+|||++||+
T Consensus       198 ~~~~~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIi  277 (566)
T PLN03225        198 FLEPVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIV  277 (566)
T ss_pred             hhcccccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEE
Confidence                  1345689999999999999887754321                  0112455778999999999999999999


Q ss_pred             eeeCCCCceEEcc-CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccc
Q 042539          148 YRDLKPENILIRQ-SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKS  226 (412)
Q Consensus       148 HrDlKp~NiLl~~-~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (412)
                      ||||||+|||++. ++.+||+|||+|+.+...                                                
T Consensus       278 HRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~------------------------------------------------  309 (566)
T PLN03225        278 HRDVKPQNIIFSEGSGSFKIIDLGAAADLRVG------------------------------------------------  309 (566)
T ss_pred             eCcCCHHHEEEeCCCCcEEEEeCCCccccccc------------------------------------------------
Confidence            9999999999986 589999999999754211                                                


Q ss_pred             cCCCCccccccccCCCCCCcccccCCCCccceeecCC----------------------CCCchhhHHHHHHHHHHHhhC
Q 042539          227 ARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD----------------------GHEFAVDWWALGILTYEMLYG  284 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~----------------------~~~~~~DiwSlGvil~ell~g  284 (412)
                                    .......++||+.|||||++...                      .++.++|||||||++|||+++
T Consensus       310 --------------~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~  375 (566)
T PLN03225        310 --------------INYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFP  375 (566)
T ss_pred             --------------cccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhC
Confidence                          11122356899999999976432                      234467999999999999997


Q ss_pred             CCCCCCCCHHHHHHHHhcC-CC-----------C-----------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          285 TTPFRGKNRKETFRNVLMK-TP-----------E-----------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       285 ~~Pf~~~~~~~~~~~i~~~-~~-----------~-----------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++..  ....+...+.. ..           .           ........+|||.+||++||++||    ++.++++
T Consensus       376 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~----ta~e~L~  449 (566)
T PLN03225        376 NLRSDS--NLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRI----SAKAALA  449 (566)
T ss_pred             cCCCch--HHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCC----CHHHHhC
Confidence            766543  22222222110 00           0           001123466999999999999999    7999999


Q ss_pred             CCCCCCCCchh
Q 042539          342 HVFFKGVRWDL  352 (412)
Q Consensus       342 h~ff~~~~~~~  352 (412)
                      ||||++..+..
T Consensus       450 Hpff~~~~~~~  460 (566)
T PLN03225        450 HPYFDREGLLG  460 (566)
T ss_pred             CcCcCCCCccc
Confidence            99999988753

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.3e-39  Score=284.51  Aligned_cols=249  Identities=25%  Similarity=0.444  Sum_probs=202.7

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      ..++|++++++|+|.|+.||.+....++    +.++||+++.       -..+.+.||+.||+.|. ||||++|+++..+
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~----eK~ViKiLKP-------VkkkKIkREikIL~nL~gg~NIi~L~DiV~D  104 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNN----EKCVIKILKP-------VKKKKIKREIKILQNLRGGPNIIKLLDIVKD  104 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCC----ceEEEeeech-------HHHHHHHHHHHHHHhccCCCCeeehhhhhcC
Confidence            5789999999999999999988765543    4499999843       23556778999999998 9999999999987


Q ss_pred             CC--eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEccccc
Q 042539           95 DE--FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDFDL  171 (412)
Q Consensus        95 ~~--~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DFGl  171 (412)
                      ..  ...|++||++..|+..+-.     .|+.-.++.|+.|++.||.|||+.||+|||+||.|++||.. -.++|+|+|+
T Consensus       105 p~SktpaLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGL  179 (338)
T KOG0668|consen  105 PESKTPSLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGL  179 (338)
T ss_pred             ccccCchhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecch
Confidence            54  5789999999988754422     38889999999999999999999999999999999999976 5799999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |.......                                                                ..+..+.+
T Consensus       180 AEFYHp~~----------------------------------------------------------------eYnVRVAS  195 (338)
T KOG0668|consen  180 AEFYHPGK----------------------------------------------------------------EYNVRVAS  195 (338)
T ss_pred             HhhcCCCc----------------------------------------------------------------eeeeeeeh
Confidence            98774333                                                                33455778


Q ss_pred             CCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCC-CCCCHHHHHHHHhcC-----------------CCCCC----
Q 042539          252 EEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPF-RGKNRKETFRNVLMK-----------------TPEFV----  308 (412)
Q Consensus       252 ~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf-~~~~~~~~~~~i~~~-----------------~~~~~----  308 (412)
                      ..|--||++..- .|+.+-|+|||||++..|+..+-|| .|.+..+++.+|..-                 .+.+.    
T Consensus       196 RyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~  275 (338)
T KOG0668|consen  196 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILG  275 (338)
T ss_pred             hhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhh
Confidence            889999998774 5799999999999999999887775 566666655444310                 01110    


Q ss_pred             -----------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          309 -----------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       309 -----------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                                       -.++++.||+.++|.+|-.+|+    ||.|++.||||..+
T Consensus       276 ~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRl----TakEam~HpyF~~~  328 (338)
T KOG0668|consen  276 RHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERL----TAKEAMAHPYFAPV  328 (338)
T ss_pred             ccccccHHHhCCccccccCChHHHHHHHHHHhhcccccc----chHHHhcCchHHHH
Confidence                             1248899999999999999999    79999999999754

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-38  Score=312.39  Aligned_cols=253  Identities=21%  Similarity=0.345  Sum_probs=212.3

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..+...+.+.||.|-||.||.+.........+.-||||..+++.-   .+..+.++.|+.+|+.++|||||+|++++.
T Consensus       385 el~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t---~d~tekflqEa~iMrnfdHphIikLIGv~~  461 (974)
T KOG4257|consen  385 ELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCT---PDDTEKFLQEASIMRNFDHPHIIKLIGVCV  461 (974)
T ss_pred             eeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCC---hhhHHHHHHHHHHHHhCCCcchhheeeeee
Confidence            45555666778999999999999987655444555699999977542   233567788999999999999999999987


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      + ...|||||++.-|+|..++..+. ..++......|+.||+.||.|||++++|||||...|||+.....|||+|||+++
T Consensus       462 e-~P~WivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR  539 (974)
T KOG4257|consen  462 E-QPMWIVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSR  539 (974)
T ss_pred             c-cceeEEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhh
Confidence            5 46899999999999999987655 458899999999999999999999999999999999999999999999999999


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.+...|...                                          ..                    .-..-
T Consensus       540 ~~ed~~yYkaS------------------------------------------~~--------------------kLPIK  557 (974)
T KOG4257|consen  540 YLEDDAYYKAS------------------------------------------RG--------------------KLPIK  557 (974)
T ss_pred             hccccchhhcc------------------------------------------cc--------------------cccee
Confidence            88655444210                                          11                    12345


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |||||.+.-..++.++|||-|||.+||+++ |.-||.|..+.+++..+-++.  |..+++++.+..|+.+||.++|.+||
T Consensus       558 WmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRP  637 (974)
T KOG4257|consen  558 WMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRP  637 (974)
T ss_pred             ecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCC
Confidence            999999999999999999999999999985 999999988888777666543  56678999999999999999999999


Q ss_pred             CCC
Q 042539          331 GYL  333 (412)
Q Consensus       331 ~~~  333 (412)
                      .+.
T Consensus       638 rft  640 (974)
T KOG4257|consen  638 RFT  640 (974)
T ss_pred             cHH
Confidence            763

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-38  Score=307.68  Aligned_cols=243  Identities=24%  Similarity=0.304  Sum_probs=188.6

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE-   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~-   96 (412)
                      ++|.--..||+|+||.||++.....     ..||||.+.......    .+.+.+|+.++.+++|||+|+|++++.+.+ 
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~~~-----~~vAVK~~~~~~~~~----~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~  145 (361)
T KOG1187|consen   75 NNFSESNLIGEGGFGTVYKGVLSDG-----TVVAVKRLSSNSGQG----EREFLNEVEILSRLRHPNLVKLLGYCLEGGE  145 (361)
T ss_pred             hCCchhcceecCCCeEEEEEEECCC-----CEEEEEEecCCCCcc----hhHHHHHHHHHhcCCCcCcccEEEEEecCCc
Confidence            3555667999999999999877543     349999886543211    334888999999999999999999999888 


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC---ceeeeCCCCceEEccCCCEEEccccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG---IAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~---iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      ..+||+||+..|+|.+.++......++......|+.+++.||+|||...   |||||||++|||+|.+...||+|||+|+
T Consensus       146 ~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~  225 (361)
T KOG1187|consen  146 HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAK  225 (361)
T ss_pred             eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcc
Confidence            5999999999999998888755326899999999999999999999864   9999999999999999999999999996


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc-ccCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF-VGTE  252 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~  252 (412)
                      .....                                                               .....+. .||.
T Consensus       226 ~~~~~---------------------------------------------------------------~~~~~~~~~gt~  242 (361)
T KOG1187|consen  226 LGPEG---------------------------------------------------------------DTSVSTTVMGTF  242 (361)
T ss_pred             cCCcc---------------------------------------------------------------ccceeeecCCCC
Confidence            43210                                                               0111122 7999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC---H---HHHHHHHhcC-------CCCCC--CCC-----h
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN---R---KETFRNVLMK-------TPEFV--GQR-----T  312 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---~---~~~~~~i~~~-------~~~~~--~~~-----~  312 (412)
                      +|+|||.+.....+.++|||||||+|.|+++|+.+.....   .   .+-....+..       ++.+.  ...     .
T Consensus       243 gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~  322 (361)
T KOG1187|consen  243 GYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVK  322 (361)
T ss_pred             ccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHH
Confidence            9999999998778999999999999999999998877432   1   1100111111       12211  112     2


Q ss_pred             HHHHHHHHhhhhCCCccCCC
Q 042539          313 ALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       313 ~~~dli~~~L~~dP~~R~~~  332 (412)
                      .+..+..+|++.+|.+||++
T Consensus       323 ~~~~~a~~C~~~~~~~RP~m  342 (361)
T KOG1187|consen  323 KLAELALRCLRPDPKERPTM  342 (361)
T ss_pred             HHHHHHHHHcCcCCCcCcCH
Confidence            36678889999999999964

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=5.6e-37  Score=310.83  Aligned_cols=273  Identities=19%  Similarity=0.214  Sum_probs=193.1

Q ss_pred             CCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCC------------CCCCCceEEeeecchhhhhhHH----------
Q 042539            8 QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAAD------------PTARCPFALKVVDKSTLHAKHE----------   65 (412)
Q Consensus         8 ~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~------------~~~~~~vAiK~i~~~~~~~~~~----------   65 (412)
                      .......+..++|.+.++||+|+||+||++.....+            ...++.||||.+.........+          
T Consensus       135 ~~~~~~r~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~  214 (507)
T PLN03224        135 ADGANSRWSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKG  214 (507)
T ss_pred             cccCCCCccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhc
Confidence            333455678999999999999999999998753322            2234569999986432111111          


Q ss_pred             HHHHHHHHHHHHhhcCCCcc-----ceeeeeEEe--------CCeEEEEeeccCCCCchhHHHhhCC-------------
Q 042539           66 AERRARWEIRVLSRLSHPFL-----PKLLGSLET--------DEFLAWAVPYCPGGDLNVLRYKQND-------------  119 (412)
Q Consensus        66 ~~~~~~~Ei~il~~l~hpnI-----v~l~~~~~~--------~~~~~lv~e~~~gg~L~~~~~~~~~-------------  119 (412)
                      .......|+.++.+++|.++     +++++++..        +...++||||+.+++|.++++....             
T Consensus       215 ~~e~~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g  294 (507)
T PLN03224        215 SAETGMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAG  294 (507)
T ss_pred             ccchhHHHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcC
Confidence            11223447778888876544     667776643        3568999999999999888764211             


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCC
Q 042539          120 ---------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK  190 (412)
Q Consensus       120 ---------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~  190 (412)
                               ..++...++.++.|++.||.|||+++|+||||||+|||++.++.+||+|||+++......           
T Consensus       295 ~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~-----------  363 (507)
T PLN03224        295 KKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGI-----------  363 (507)
T ss_pred             CchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCC-----------
Confidence                     124567889999999999999999999999999999999999999999999986432100           


Q ss_pred             CCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCC------
Q 042539          191 FPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG------  264 (412)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~------  264 (412)
                                                                         ........+|+.|+|||++....      
T Consensus       364 ---------------------------------------------------~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~  392 (507)
T PLN03224        364 ---------------------------------------------------NFNPLYGMLDPRYSPPEELVMPQSCPRAP  392 (507)
T ss_pred             ---------------------------------------------------ccCccccCCCcceeChhhhcCCCCCCccc
Confidence                                                               00011224589999999986432      


Q ss_pred             --------------C--CchhhHHHHHHHHHHHhhCCC-CCCCCCHHH-----------HHHHHhcCCC---CCCCCChH
Q 042539          265 --------------H--EFAVDWWALGILTYEMLYGTT-PFRGKNRKE-----------TFRNVLMKTP---EFVGQRTA  313 (412)
Q Consensus       265 --------------~--~~~~DiwSlGvil~ell~g~~-Pf~~~~~~~-----------~~~~i~~~~~---~~~~~~~~  313 (412)
                                    |  ....|+||+||++|+|++|.. ||.+.....           .++.+.....   .+...++.
T Consensus       393 ~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~d~~s~~  472 (507)
T PLN03224        393 APAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLLDRNKEA  472 (507)
T ss_pred             hhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccccccChH
Confidence                          1  124799999999999999875 776422111           1111111222   23456789


Q ss_pred             HHHHHHHhhhhCC---CccCCCCCChhhhhcCCCCC
Q 042539          314 LTDLIQRLLEKDP---VKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       314 ~~dli~~~L~~dP---~~R~~~~~~~~e~l~h~ff~  346 (412)
                      ++|||.+||.++|   .+|+    +++|+|+||||.
T Consensus       473 ~~dLi~~LL~~~~~~~~~Rl----Sa~eaL~Hp~f~  504 (507)
T PLN03224        473 GWDLACKLITKRDQANRGRL----SVGQALSHRFFL  504 (507)
T ss_pred             HHHHHHHHhccCCCCcccCC----CHHHHhCCCCcC
Confidence            9999999999876   6899    699999999995

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-37  Score=294.38  Aligned_cols=139  Identities=25%  Similarity=0.326  Sum_probs=116.3

Q ss_pred             CCCCCc-cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-----C---
Q 042539           12 TPSLDL-DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-----H---   82 (412)
Q Consensus        12 ~~~~~~-~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-----h---   82 (412)
                      ...+.- .+|.+.++||-|.|++||||.|....+.    ||+||++-..     -..+..+.||++|++++     |   
T Consensus        71 IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~----VAlKVvKSAq-----hYtEaAlDEIklL~~v~~~Dp~~~~~  141 (590)
T KOG1290|consen   71 IGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRY----VALKVVKSAQ-----HYTEAALDEIKLLQQVREGDPNDPGK  141 (590)
T ss_pred             ccccccCceEEEEEeccccccceeEEEeeccCCeE----EEEEEEehhh-----HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            333334 8999999999999999999999886555    9999996543     23344566999999995     2   


Q ss_pred             CccceeeeeEEe----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceE
Q 042539           83 PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENIL  157 (412)
Q Consensus        83 pnIv~l~~~~~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiL  157 (412)
                      .+||+|++.|..    +.++|+|+|++ |..|..++.....+.++...++.|++||+.||.|||+. ||||-||||+|||
T Consensus       142 ~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvL  220 (590)
T KOG1290|consen  142 KCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVL  220 (590)
T ss_pred             ceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceee
Confidence            369999999974    46999999999 77787788777777899999999999999999999975 9999999999999


Q ss_pred             Ecc
Q 042539          158 IRQ  160 (412)
Q Consensus       158 l~~  160 (412)
                      +..
T Consensus       221 l~~  223 (590)
T KOG1290|consen  221 LCS  223 (590)
T ss_pred             eec
Confidence            853

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-38  Score=312.24  Aligned_cols=256  Identities=21%  Similarity=0.281  Sum_probs=216.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +.-|-.++.++.++||+|+||.|+.+.|+.... ..-.||||.++...+..   ....+++|+.+|.+|+|+|+++||++
T Consensus       104 kclIpee~i~l~e~LG~GsFgvV~rg~Wt~psg-k~V~VAVKclr~d~l~~---~mddflrEas~M~~L~H~hliRLyGv  179 (1039)
T KOG0199|consen  104 KCLIPEEQIKLYELLGEGSFGVVKRGTWTQPSG-KHVNVAVKCLRDDSLNA---IMDDFLREASHMLKLQHPHLIRLYGV  179 (1039)
T ss_pred             ceeccHHHHHHHHHhcCcceeeEeeccccCCCC-cEEeEEEEeccCCccch---hHHHHHHHHHHHHhccCcceeEEeee
Confidence            334556788889999999999999999987544 34459999997765533   56678889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      ..+ ..+.+|||+|.+|+|.+.++......|.-.....|+.||+.|+.||.++++|||||...|+|+-.-..||||||||
T Consensus       180 Vl~-qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGL  258 (1039)
T KOG0199|consen  180 VLD-QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGL  258 (1039)
T ss_pred             ecc-chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccc
Confidence            988 7889999999999998888875666788999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      .+-+..+..+.                                                            .+.....-.
T Consensus       259 mRaLg~ned~Y------------------------------------------------------------vm~p~rkvP  278 (1039)
T KOG0199|consen  259 MRALGENEDMY------------------------------------------------------------VMAPQRKVP  278 (1039)
T ss_pred             eeccCCCCcce------------------------------------------------------------EecCCCcCc
Confidence            98764332210                                                            011111234


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      ..|.|||.+....++.++|+|++||+||||++ |..||.|.....++++|-.+.  +....++.++.+++..||..+|.+
T Consensus       279 fAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paD  358 (1039)
T KOG0199|consen  279 FAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPAD  358 (1039)
T ss_pred             ccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCChHHHHHHHHHhccCCccc
Confidence            57999999999999999999999999999995 999999999999998887432  455678899999999999999999


Q ss_pred             cCCC
Q 042539          329 RLGY  332 (412)
Q Consensus       329 R~~~  332 (412)
                      |++|
T Consensus       359 RptF  362 (1039)
T KOG0199|consen  359 RPTF  362 (1039)
T ss_pred             cccH
Confidence            9976

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=303.51  Aligned_cols=253  Identities=22%  Similarity=0.302  Sum_probs=209.4

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...++-.+.+.+.++||+|-||.|.+|.-..     ...||+|.++...   .......+.+||++|.+|+|||||.|++
T Consensus       531 al~EfPRs~L~~~ekiGeGqFGEVhLCeveg-----~lkVAVK~Lr~~a---~~~~r~~F~kEIkiLsqLkhPNIveLvG  602 (807)
T KOG1094|consen  531 ALVEFPRSRLRFKEKIGEGQFGEVHLCEVEG-----PLKVAVKILRPDA---TKNARNDFLKEIKILSRLKHPNIVELLG  602 (807)
T ss_pred             chhhcchhheehhhhhcCcccceeEEEEecC-----ceEEEEeecCccc---chhHHHHHHHHHHHHhccCCCCeeEEEe
Confidence            3456777888999999999999999998654     3459999996653   2234577888999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++..++.+|++|||++.|||.+++..+....+.......++.||+.|++||.+.++|||||.+.|+|++.++++||+|||
T Consensus       603 VC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfg  682 (807)
T KOG1094|consen  603 VCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFG  682 (807)
T ss_pred             eeecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcc
Confidence            99999999999999999999999887654334555566799999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.+.....|..|                                                             ..++-
T Consensus       683 msR~lysg~yy~vq-------------------------------------------------------------gr~vl  701 (807)
T KOG1094|consen  683 MSRNLYSGDYYRVQ-------------------------------------------------------------GRAVL  701 (807)
T ss_pred             cccccccCCceeee-------------------------------------------------------------cceee
Confidence            99976544333221                                                             23355


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHh--hCCCCCCCCCHHHHHHHHhc---CC------CCCCCCChHHHHHHH
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEML--YGTTPFRGKNRKETFRNVLM---KT------PEFVGQRTALTDLIQ  319 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell--~g~~Pf~~~~~~~~~~~i~~---~~------~~~~~~~~~~~dli~  319 (412)
                      ..+|||+|.+.-..++.++|+|+||+++||++  +...||....+++..++...   ..      ...+.++..+.++|-
T Consensus       702 piRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml  781 (807)
T KOG1094|consen  702 PIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELML  781 (807)
T ss_pred             eeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHH
Confidence            67899999999889999999999999999986  68899999888877766532   11      122346788999999


Q ss_pred             HhhhhCCCccCCC
Q 042539          320 RLLEKDPVKRLGY  332 (412)
Q Consensus       320 ~~L~~dP~~R~~~  332 (412)
                      +||.++-++||++
T Consensus       782 ~Cw~~es~~RPsF  794 (807)
T KOG1094|consen  782 RCWRRESEQRPSF  794 (807)
T ss_pred             HHhchhhhcCCCH
Confidence            9999999999964

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-38  Score=285.96  Aligned_cols=258  Identities=25%  Similarity=0.375  Sum_probs=203.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE-   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~-   96 (412)
                      .|.+--+.||.|+||+||.+.|-..+    +.||+|.+..  ....-...+++.+|+.+|...+|.|++..++..+-.. 
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDPRdg----rrvalkK~pn--vfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~  126 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDPRSG----KRVALKKMPN--VFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANP  126 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCCCCc----cchhHhhcch--HHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCc
Confidence            35556679999999999998776644    4499998743  3344456678888999999999999999999887543 


Q ss_pred             ----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           97 ----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        97 ----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                          .+|+++|++ ..||...+-  ....++.+.++-+++||+.||+|||+.||+||||||.|+|++.|..+||||||+|
T Consensus       127 dfFqEiYV~TELm-QSDLHKIIV--SPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLA  203 (449)
T KOG0664|consen  127 SFFQELYVLTELM-QSDLHKIIV--SPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLA  203 (449)
T ss_pred             hHHHHHHHHHHHH-Hhhhhheec--cCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccc
Confidence                578899998 456755543  3456999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +......                                                              ....+.-+-|.
T Consensus       204 Rvee~d~--------------------------------------------------------------~~hMTqEVVTQ  221 (449)
T KOG0664|consen  204 RTWDQRD--------------------------------------------------------------RLNMTHEVVTQ  221 (449)
T ss_pred             cccchhh--------------------------------------------------------------hhhhHHHHHHH
Confidence            8652111                                                              01111225678


Q ss_pred             CCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh-----------------------cCCCCCC
Q 042539          253 EYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----------------------MKTPEFV  308 (412)
Q Consensus       253 ~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~-----------------------~~~~~~~  308 (412)
                      .|+|||++.|. .|+.++||||+|||+.||+..+..|...+..+++.-|.                       .+....+
T Consensus       222 YYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~P  301 (449)
T KOG0664|consen  222 YYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAP  301 (449)
T ss_pred             HhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCC
Confidence            99999999986 47999999999999999999999999988766654443                       1111111


Q ss_pred             CC------------ChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          309 GQ------------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       309 ~~------------~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      +.            ..+..+++.+||..||.+|+    ..++++.|++......
T Consensus       302 s~~vLYtlsS~~~~~heav~~~~~~l~~d~dkri----s~~~A~~~~~~~e~R~  351 (449)
T KOG0664|consen  302 DTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRI----SVEEALQHRYLEEGRL  351 (449)
T ss_pred             CccceeeecCCcccchHHHHHHHHHhCCCCcccc----cHhhhcccccccccce
Confidence            11            14678899999999999999    5899999999876543

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=5.4e-36  Score=275.90  Aligned_cols=239  Identities=42%  Similarity=0.686  Sum_probs=199.0

Q ss_pred             CceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeeccCCCC
Q 042539           30 AMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD  109 (412)
Q Consensus        30 ~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~  109 (412)
                      +||.||++.+..++    +.+|+|++........   ...+.+|+++++.++|+||+++++.+......++++|++.+++
T Consensus         1 ~~g~v~~~~~~~~~----~~~~~k~~~~~~~~~~---~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   73 (244)
T smart00220        1 SFGKVYLARDKKTG----KLVAIKVIKKEKIKKK---RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGD   73 (244)
T ss_pred             CceEEEEEEECCCC----cEEEEEEecccccccH---HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCC
Confidence            68999999987644    4499999976543221   4667789999999999999999999999999999999999999


Q ss_pred             chhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCC
Q 042539          110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN  189 (412)
Q Consensus       110 L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~  189 (412)
                      |..++.....  ++...+..++.+++.+|.|||+.|++|+||+|+||+++.++.++|+|||.+.......          
T Consensus        74 L~~~~~~~~~--~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~----------  141 (244)
T smart00220       74 LFDLLKKRGR--LSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG----------  141 (244)
T ss_pred             HHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc----------
Confidence            9887765433  8899999999999999999999999999999999999999999999999987652110          


Q ss_pred             CCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchh
Q 042539          190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAV  269 (412)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~  269 (412)
                                                                            ......++..|++||.+.+..++.++
T Consensus       142 ------------------------------------------------------~~~~~~~~~~~~~pE~~~~~~~~~~~  167 (244)
T smart00220      142 ------------------------------------------------------LLTTFVGTPEYMAPEVLLGKGYGKAV  167 (244)
T ss_pred             ------------------------------------------------------ccccccCCcCCCCHHHHccCCCCchh
Confidence                                                                  12234678899999999888888899


Q ss_pred             hHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcCCCCCCC----CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCC
Q 042539          270 DWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMKTPEFVG----QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       270 DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~~~~~~~----~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~f  344 (412)
                      |+||||+++|+|++|..||.. .+.......+.........    .+.++.+++.+||..+|.+||    ++.++++|||
T Consensus       168 Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp----~~~~~~~~~~  243 (244)
T smart00220      168 DVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRL----TAEEALQHPF  243 (244)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhcc----CHHHHhhCCC
Confidence            999999999999999999988 4444444444433322221    678999999999999999999    6999999999


Q ss_pred             C
Q 042539          345 F  345 (412)
Q Consensus       345 f  345 (412)
                      |
T Consensus       244 ~  244 (244)
T smart00220      244 F  244 (244)
T ss_pred             C
Confidence            7

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-37  Score=309.53  Aligned_cols=259  Identities=21%  Similarity=0.337  Sum_probs=222.9

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .-+++....+|.++||.|.||.||.++.+..++ ....||||.++...   .+.....|+.|+.||-+++||||++|.++
T Consensus       623 akEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgk-re~~VAIKTLK~Gy---tekqrrdFL~EAsIMGQFdHPNIIrLEGV  698 (996)
T KOG0196|consen  623 AKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGK-REITVAIKTLKAGY---TEKQRRDFLSEASIMGQFDHPNIIRLEGV  698 (996)
T ss_pred             hhhcChhheEEEEEEecccccceecccccCCCC-cceeEEEeeeccCc---cHHHHhhhhhhhhhcccCCCCcEEEEEEE
Confidence            457888899999999999999999999876654 45669999997654   34557778899999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      ......+.||+|||+.|+|+.+++.+. +.|+..+...+++.|+.|++||-+.|+|||||...|||++.+-.+|++|||+
T Consensus       699 VTks~PvMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGL  777 (996)
T KOG0196|consen  699 VTKSKPVMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGL  777 (996)
T ss_pred             EecCceeEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccc
Confidence            999999999999999999999988765 5699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc-
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG-  250 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-  250 (412)
                      ++.+.+..+                                                              ...++.-| 
T Consensus       778 SRvledd~~--------------------------------------------------------------~~ytt~GGK  795 (996)
T KOG0196|consen  778 SRVLEDDPE--------------------------------------------------------------AAYTTLGGK  795 (996)
T ss_pred             eeecccCCC--------------------------------------------------------------ccccccCCc
Confidence            997632210                                                              00111111 


Q ss_pred             -CCCCccceeecCCCCCchhhHHHHHHHHHHHh-hCCCCCCCCCHHHHHHHHhcC--CCCCCCCChHHHHHHHHhhhhCC
Q 042539          251 -TEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVLMK--TPEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       251 -t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell-~g~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~dli~~~L~~dP  326 (412)
                       ..+|.|||.+....++.++||||+|+++||.+ +|..||=..++++++..|..+  .|...+++..+..|+..||++|.
T Consensus       796 IPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR  875 (996)
T KOG0196|consen  796 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKDR  875 (996)
T ss_pred             cceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHh
Confidence             35799999999999999999999999999977 699999999999999998865  46777899999999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||.    ..+|..
T Consensus       876 ~~RP~----F~qiV~  886 (996)
T KOG0196|consen  876 NRRPK----FAQIVS  886 (996)
T ss_pred             hcCCC----HHHHHH
Confidence            99995    456554

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=298.67  Aligned_cols=252  Identities=21%  Similarity=0.275  Sum_probs=214.1

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      -.++++.-++...++||-|-||.||.+.|+.....    ||||.++.+..     ....++.|+.+|+.++|||+|+|++
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslT----vAVKtLKEDtM-----eveEFLkEAAvMKeikHpNLVqLLG  330 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLLG  330 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeecccee----eehhhhhhcch-----hHHHHHHHHHHHHhhcCccHHHHhh
Confidence            46777788888999999999999999999875544    99999965442     3456777999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++..+-.+|||+|||..|.|.+++..-+..-++.-....++.||..|++||..+++|||||...|+|+.++..||++|||
T Consensus       331 VCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFG  410 (1157)
T KOG4278|consen  331 VCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFG  410 (1157)
T ss_pred             hhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccc
Confidence            99999999999999999999999887776668888889999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      |++.+...+.-.                                                              .....-
T Consensus       411 LsRlMtgDTYTA--------------------------------------------------------------HAGAKF  428 (1157)
T KOG4278|consen  411 LSRLMTGDTYTA--------------------------------------------------------------HAGAKF  428 (1157)
T ss_pred             hhhhhcCCceec--------------------------------------------------------------ccCccC
Confidence            999874322100                                                              000011


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      ..-|.|||-+....++.++|||||||+|||+.| |..||.|.+...++.-+-.+.  ....++++.+..|++.||+++|.
T Consensus       429 PIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPs  508 (1157)
T KOG4278|consen  429 PIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPS  508 (1157)
T ss_pred             cccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcc
Confidence            346999999999999999999999999999985 999999999888877655443  23457889999999999999999


Q ss_pred             ccCCCC
Q 042539          328 KRLGYL  333 (412)
Q Consensus       328 ~R~~~~  333 (412)
                      +||+|.
T Consensus       509 DRPsFa  514 (1157)
T KOG4278|consen  509 DRPSFA  514 (1157)
T ss_pred             cCccHH
Confidence            999873

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-37  Score=313.65  Aligned_cols=243  Identities=33%  Similarity=0.423  Sum_probs=195.0

Q ss_pred             eeeeeccCceE-EEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeEEE
Q 042539           23 LKILGKGAMGT-VFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLAW  100 (412)
Q Consensus        23 ~~~LG~G~fg~-V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~~l  100 (412)
                      .+.+|.|+.|+ ||++..      .++.||||.+-       .+....+.|||+.|+..+ |||||++|+.-++..++||
T Consensus       514 ~eilG~Gs~Gt~Vf~G~y------e~R~VAVKrll-------~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YI  580 (903)
T KOG1027|consen  514 KEILGYGSNGTVVFRGVY------EGREVAVKRLL-------EEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYI  580 (903)
T ss_pred             HHHcccCCCCcEEEEEee------CCceehHHHHh-------hHhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEE
Confidence            35789999987 566554      34459999873       345567778999999996 9999999999999999999


Q ss_pred             EeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc---CC--CEEEccccccc
Q 042539          101 AVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ---SG--HVTLTDFDLSR  173 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~---~g--~vkL~DFGla~  173 (412)
                      +.|+|. -+|.+++...  ..........+..+.|++.||++||+.+||||||||+||||+.   ++  .++|+|||+|+
T Consensus       581 alELC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsK  659 (903)
T KOG1027|consen  581 ALELCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSK  659 (903)
T ss_pred             EehHhh-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEeccccccc
Confidence            999994 5888888763  1111111455788999999999999999999999999999987   34  58999999999


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.....                                                            .-.+.++..||-+
T Consensus       660 kl~~~~s------------------------------------------------------------S~~r~s~~sGt~G  679 (903)
T KOG1027|consen  660 KLAGGKS------------------------------------------------------------SFSRLSGGSGTSG  679 (903)
T ss_pred             ccCCCcc------------------------------------------------------------hhhcccCCCCccc
Confidence            8742211                                                            1122456789999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHhcCCCCCCCCC--h--HHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVLMKTPEFVGQR--T--ALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g-~~Pf~~~~~~~~~~~i~~~~~~~~~~~--~--~~~dli~~~L~~dP~~  328 (412)
                      |+|||++....-+.++||+||||++|+.++| ..||...  .+...+|+.+........  +  +++|||.+||.++|..
T Consensus       680 W~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~--~~R~~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~  757 (903)
T KOG1027|consen  680 WQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDS--LERQANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQL  757 (903)
T ss_pred             ccCHHHHhccccCcccchhhcCceEEEEecCCccCCCch--HHhhhhhhcCccceeeeccCchHHHHHHHHHhcCCCccc
Confidence            9999999998888899999999999999985 9999764  444457777765543321  2  8999999999999999


Q ss_pred             cCCCCCChhhhhcCCCC
Q 042539          329 RLGYLRGACEIKEHVFF  345 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff  345 (412)
                      ||    +|.+++.||||
T Consensus       758 RP----sa~~VL~HPlF  770 (903)
T KOG1027|consen  758 RP----SATDVLNHPLF  770 (903)
T ss_pred             CC----CHHHHhCCCcc
Confidence            99    69999999999

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=308.84  Aligned_cols=299  Identities=36%  Similarity=0.630  Sum_probs=244.4

Q ss_pred             eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeEEEEee
Q 042539           25 ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++|+|+||.|++|+.. .+...+..+|+|+.++.....+...  +...|..++..++ ||++|+++..|+.+..++++++
T Consensus         1 vlg~g~~gkvfLvrk~-~g~da~~~yamkvl~k~t~~~~~~~--~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld   77 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKA-GGADAGHLYAMKVLKKATLKVRDRT--HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILD   77 (612)
T ss_pred             CCCcCCCcchHHHHHh-ccccccchhhhhccccccccccccc--ccccHHHHHhhccCCCceeeeeeeeccccchhHhhh
Confidence            4799999999999854 4455677799999998887555444  5666899999998 9999999999999999999999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      +..||+|...+...  ..+++...+.+.++++.|++++|+.||+|||+|++||+++.+|++++.|||+++......    
T Consensus        78 ~~rgg~lft~l~~~--~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~----  151 (612)
T KOG0603|consen   78 FLRGGDLFTRLSKE--VMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK----  151 (612)
T ss_pred             hcccchhhhccccC--CchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhh----
Confidence            99999996655443  459999999999999999999999999999999999999999999999999998774321    


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                                     ..|||..|||||++.  
T Consensus       152 ---------------------------------------------------------------~~cgt~eymApEI~~--  166 (612)
T KOG0603|consen  152 ---------------------------------------------------------------IACGTYEYRAPEIIN--  166 (612)
T ss_pred             ---------------------------------------------------------------hcccchhhhhhHhhh--
Confidence                                                                           118999999999998  


Q ss_pred             CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC-CChhhhhc
Q 042539          264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKE  341 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~-~~~~e~l~  341 (412)
                      ++..++|+||||++.|||++|..||.+    ++.++|+......+ ..+..+.+++..|+..+|.+|++.. ..+.++++
T Consensus       167 gh~~a~D~ws~gvl~felltg~~pf~~----~~~~~Il~~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~  242 (612)
T KOG0603|consen  167 GHLSAADWWSFGVLAFELLTGTLPFGG----DTMKRILKAELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQ  242 (612)
T ss_pred             ccCCcccchhhhhhHHHHhhCCCCCch----HHHHHHhhhccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhc
Confidence            677899999999999999999999998    77788887555444 4568899999999999999999864 46999999


Q ss_pred             CCCCCCCCchhhcc-cCCCCCCCCCCCchhhhhhhcCCCCChhhhhhccCCCCCCCCCCCCCCCC-CCCccCC
Q 042539          342 HVFFKGVRWDLLTD-VLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPS-HRSFAEY  412 (412)
Q Consensus       342 h~ff~~~~~~~~~~-~~~pp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~  412 (412)
                      |+||..++|+.+.. ..+|||.|....++.           ...+-..+....|...|.-.++++ ++-|.||
T Consensus       243 h~f~~~i~~~~l~~r~~~~~fkp~~~~e~~-----------~~~fd~eft~~~P~dsp~~~~~~s~~~if~g~  304 (612)
T KOG0603|consen  243 HEFFQSIDWNELEARSRPPPFKPGSITERD-----------VAQFDPEFTSQVPADSPLLSASGSDHTIFSGP  304 (612)
T ss_pred             cchheeeeHhhHhhcCCCCCCCCcccchhh-----------hhhcCchhccCCcccCCCCCCCccccchhcCC
Confidence            99999999997655 457788887655432           222333455666666555444444 3666554

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=261.77  Aligned_cols=220  Identities=24%  Similarity=0.395  Sum_probs=179.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~   92 (412)
                      ++..+++..+..||+|+||.|=+.++..++.    ..|+|.++... +  ....++.++|+.+.... .||++|++|+.+
T Consensus        42 eV~ad~L~~i~elGrGayG~vekmrh~~sg~----imAvKri~~tv-n--~q~q~r~L~dldi~~r~~~CPf~V~FyGa~  114 (282)
T KOG0984|consen   42 EVPADDLVGIEELGRGAYGVVEKMRHIQSGT----IMAVKRIRATV-N--SQEQKRLLMDLDIIMRTVDCPFTVHFYGAL  114 (282)
T ss_pred             ccchhhhhhhhhhcCCccchhhheeeccCCe----EEEEeeehhhc-C--hHHHHHHHHhhhhhccCCCCCeEEEeehhh
Confidence            4555677788899999999999888877554    49999996543 2  34566777799887776 599999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      .....+++.||.|. .+|+.+...  ..++.++|..+-.++..++.||.|||++ .+||||+||+||||+..|+||+|||
T Consensus       115 ~regdvwIcME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDF  193 (282)
T KOG0984|consen  115 FREGDVWICMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDF  193 (282)
T ss_pred             hccccEEEeHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEccc
Confidence            99999999999994 455544222  2456799999999999999999999987 8999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |++..+.++....                                                                .-.
T Consensus       194 GIsG~L~dSiAkt----------------------------------------------------------------~da  209 (282)
T KOG0984|consen  194 GISGYLVDSIAKT----------------------------------------------------------------MDA  209 (282)
T ss_pred             ccceeehhhhHHH----------------------------------------------------------------Hhc
Confidence            9998876543321                                                                124


Q ss_pred             cCCCCccceeecC----CCCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcCCC
Q 042539          250 GTEEYVSPEVVRG----DGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMKTP  305 (412)
Q Consensus       250 gt~~Y~APE~l~~----~~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~~~  305 (412)
                      |-..|||||.+..    .+|+.++||||||++++||.+++.||.. .+.-+++++++...+
T Consensus       210 GCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVeep~  270 (282)
T KOG0984|consen  210 GCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEEPS  270 (282)
T ss_pred             CCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhcCCC
Confidence            6778999999854    4789999999999999999999999976 566778888876543

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-37  Score=298.47  Aligned_cols=203  Identities=29%  Similarity=0.485  Sum_probs=174.0

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH----HHHHHHHHHHHHHhhcC---CCcccee
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH----EAERRARWEIRVLSRLS---HPFLPKL   88 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~----~~~~~~~~Ei~il~~l~---hpnIv~l   88 (412)
                      .+.+|..++.||.|+||+|++|.++..+..    |+||.|.|+.+....    ...-.+--||+||..|+   |+||+++
T Consensus       559 k~s~yttlq~lG~GAyGkV~lai~K~n~~e----VViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKl  634 (772)
T KOG1152|consen  559 KFSDYTTLQPLGEGAYGKVNLAIHKENNYE----VVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKL  634 (772)
T ss_pred             ccccceeeeeccccccceEEEeeecccceE----EEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhh
Confidence            346799999999999999999999886544    999999887652211    11112334999999998   9999999


Q ss_pred             eeeEEeCCeEEEEeecc-CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           89 LGSLETDEFLAWAVPYC-PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~-~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      +++|++++++||+||-- +|.||.+++..+.+  ++|.+++.++.|++.|+++||+.||||||||=+|+.++.+|.+||+
T Consensus       635 LdfFEddd~yyl~te~hg~gIDLFd~IE~kp~--m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~kli  712 (772)
T KOG1152|consen  635 LDFFEDDDYYYLETEVHGEGIDLFDFIEFKPR--MDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLI  712 (772)
T ss_pred             hheeecCCeeEEEecCCCCCcchhhhhhccCc--cchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEe
Confidence            99999999999999875 45677777766554  9999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||.|...                                                                 ....-.+
T Consensus       713 dfgsaa~~-----------------------------------------------------------------ksgpfd~  727 (772)
T KOG1152|consen  713 DFGSAAYT-----------------------------------------------------------------KSGPFDV  727 (772)
T ss_pred             eccchhhh-----------------------------------------------------------------cCCCcce
Confidence            99988543                                                                 3345568


Q ss_pred             cccCCCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCC
Q 042539          248 FVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFR  289 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~  289 (412)
                      |+||..|.|||++.|..| ++.-||||||++||-+++..-||.
T Consensus       728 f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  728 FVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             eeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            999999999999999998 889999999999999999998885

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=1.7e-35  Score=280.79  Aligned_cols=298  Identities=23%  Similarity=0.345  Sum_probs=207.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~   93 (412)
                      ...+.|.++.+||+|+|++||++.+... ......||+|.|....      ...++..|+++|..+. +.||+++.+++.
T Consensus        33 ~~~~~~~~v~kigeGsFssv~~a~~~~~-~~~~~~valk~i~~ts------~p~ri~~El~~L~~~gG~~ni~~~~~~~r  105 (418)
T KOG1167|consen   33 FISNAYKVVNKIGEGSFSSVYKATDIEQ-DTKRRYVALKAIYRTS------SPSRILNELEMLYRLGGSDNIIKLNGCFR  105 (418)
T ss_pred             hhhhhhhhhccccccchhhhhhhhHhhh-ccccceEeeeeccccc------CchHHHHHHHHHHHhccchhhhcchhhhc
Confidence            3457899999999999999999887652 2245669999985543      2345777999999996 899999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEcccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDFDLS  172 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DFGla  172 (412)
                      .++++.+||||++..+..++...     ++-.+++.|++.++.||.++|.+|||||||||.|+|.+.. +.-.|+|||+|
T Consensus       106 nnd~v~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA  180 (418)
T KOG1167|consen  106 NNDQVAIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLA  180 (418)
T ss_pred             cCCeeEEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhH
Confidence            99999999999999888766533     7789999999999999999999999999999999999876 77899999999


Q ss_pred             chhhchh--hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          173 RNLVKKT--AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       173 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      .......  +....-....   ..|..                  .....+....++........-.............|
T Consensus       181 ~~~d~~~~~~~s~~~~~~~---~~~~~------------------g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAG  239 (418)
T KOG1167|consen  181 QRYDGYQQTEHSRSYSGRH---ATPAM------------------GKDVHCQSVATASKPAGYYRRCNDGRPSERANRAG  239 (418)
T ss_pred             HHHHhhhhhhhhhhhhccc---CCccc------------------cCcccccccccccCCCCceeccCCCccceecccCC
Confidence            8532111  1100000000   00000                  00000111111000000000001122233456789


Q ss_pred             CCCCccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHh--------------cCC----------
Q 042539          251 TEEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVL--------------MKT----------  304 (412)
Q Consensus       251 t~~Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~--------------~~~----------  304 (412)
                      |++|.|||++...+ .+.++||||.|||+.-+++++.||-.... ...+..+.              .+.          
T Consensus       240 T~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~  319 (418)
T KOG1167|consen  240 TPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIP  319 (418)
T ss_pred             CCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeecccccc
Confidence            99999999998765 58899999999999999999999854321 11100000              000          


Q ss_pred             --------------------CC-------C-CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          305 --------------------PE-------F-VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       305 --------------------~~-------~-~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                          ..       . .-.+..+.||+.+||+.||.+|+    +++++|+||||...+
T Consensus       320 ~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRi----tAEeALkHpFF~~~~  388 (418)
T KOG1167|consen  320 TIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRI----TAEDALKHPFFDEAD  388 (418)
T ss_pred             ccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcc----cHHHHhcCcCCcchh
Confidence                                00       0 01123688999999999999999    799999999999654

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-34  Score=297.81  Aligned_cols=257  Identities=25%  Similarity=0.353  Sum_probs=209.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCC---CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccce
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPT---ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPK   87 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~   87 (412)
                      .+++..+++++.+.||+|+||+|+++.-+.....   ....||||.++.....   ...+.+..|+++|+.+. |+||+.
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~---~~~~~~~~El~~m~~~g~H~niv~  366 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS---SEKKDLMSELNVLKELGKHPNIVN  366 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc---HHHHHHHHHHHHHHHhcCCcchhh
Confidence            6788888889999999999999999876544432   2567999999665432   45667778999999995 999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhC-------C-------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-------D-------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP  153 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~-------~-------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp  153 (412)
                      +++++...+.+++|+|||..|+|..++....       .       ..++..+...++.||+.|++||++..+|||||-.
T Consensus       367 llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAa  446 (609)
T KOG0200|consen  367 LLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAA  446 (609)
T ss_pred             heeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhh
Confidence            9999999999999999999999998887655       0       1388899999999999999999999999999999


Q ss_pred             CceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          154 ENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       154 ~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                      .|||+..+..+||+|||+|+.......+..+                                                 
T Consensus       447 RNVLi~~~~~~kIaDFGlar~~~~~~~y~~~-------------------------------------------------  477 (609)
T KOG0200|consen  447 RNVLITKNKVIKIADFGLARDHYNKDYYRTK-------------------------------------------------  477 (609)
T ss_pred             hhEEecCCCEEEEccccceeccCCCCceEec-------------------------------------------------
Confidence            9999999999999999999865433222110                                                 


Q ss_pred             ccccccCCCCCCccccc--CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCC-HHHHHHHHhcCC--CCC
Q 042539          234 RRQQSFDNGERSNSFVG--TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKN-RKETFRNVLMKT--PEF  307 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~g--t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~-~~~~~~~i~~~~--~~~  307 (412)
                                   .-.|  ...|||||.+....|+.++||||+|++|||+++ |..||.+.. ..+.+..+..+.  ...
T Consensus       478 -------------~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P  544 (609)
T KOG0200|consen  478 -------------SSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQP  544 (609)
T ss_pred             -------------CCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCC
Confidence                         0011  224999999999999999999999999999997 999999865 556655444433  223


Q ss_pred             CCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          308 VGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       308 ~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ..+++++.+++..||+.+|++||++.
T Consensus       545 ~~c~~eiY~iM~~CW~~~p~~RP~F~  570 (609)
T KOG0200|consen  545 EHCSDEIYDLMKSCWNADPEDRPTFS  570 (609)
T ss_pred             CCCCHHHHHHHHHHhCCCcccCCCHH
Confidence            34589999999999999999999753

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-36  Score=296.08  Aligned_cols=255  Identities=26%  Similarity=0.387  Sum_probs=210.3

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|.++..+|.|+||.||+|+++.++.    ..|+|+++..-    .+...-+.+|+-+++.++|+|||.+++.+...+
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~e----laavkvVkLep----~dd~~~iqqei~~~~dc~h~nivay~gsylr~d   85 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGE----LAAVKVVKLEP----GDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRD   85 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCc----hhhheeeeccC----CccccccccceeeeecCCCcChHHHHhhhhhhc
Confidence            4799999999999999999999988554    49999997653    234555667999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .++++||||.||+|.+.-+  ..+.++|.++....++.+.||+|||+.|-+|||||=.|||+++.|.+|++|||.+..+.
T Consensus        86 klwicMEycgggslQdiy~--~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqit  163 (829)
T KOG0576|consen   86 KLWICMEYCGGGSLQDIYH--VTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQIT  163 (829)
T ss_pred             CcEEEEEecCCCcccceee--ecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhh
Confidence            9999999999999976533  34579999999999999999999999999999999999999999999999999987663


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .-                                                               -....+|.||+.|||
T Consensus       164 at---------------------------------------------------------------i~KrksfiGtpywma  180 (829)
T KOG0576|consen  164 AT---------------------------------------------------------------IAKRKSFIGTPYWMA  180 (829)
T ss_pred             hh---------------------------------------------------------------hhhhhcccCCccccc
Confidence            11                                                               112347899999999


Q ss_pred             ceeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---CCCC---CCChHHHHHHHHhhhhCCC
Q 042539          257 PEVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---PEFV---GQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       257 PE~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---~~~~---~~~~~~~dli~~~L~~dP~  327 (412)
                      ||+-.   ..+|+..+|+||+|++..|+---++|-...-....+.-.-+..   +.+.   ..++.+.+|++.+|.++|.
T Consensus       181 pEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpK  260 (829)
T KOG0576|consen  181 PEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPK  260 (829)
T ss_pred             hhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCc
Confidence            99863   4578999999999999999998888865544333332222222   2222   2457899999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCC
Q 042539          328 KRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      +||    +++.++.|||....
T Consensus       261 kRp----taeklL~h~fvs~~  277 (829)
T KOG0576|consen  261 KRP----TAEKLLQHPFVSQT  277 (829)
T ss_pred             cCC----Chhhheeceeeccc
Confidence            999    79999999998753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-34  Score=320.39  Aligned_cols=235  Identities=21%  Similarity=0.282  Sum_probs=181.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|...+.||+|+||.||+|+++..+.    .||+|.++.....        ...|++++++++|||||++++++.+++.
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~----~vavK~~~~~~~~--------~~~~~~~l~~l~HpnIv~~~~~~~~~~~  757 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGM----QFVVKEINDVNSI--------PSSEIADMGKLQHPNIVKLIGLCRSEKG  757 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCc----EEEEEEccCCccc--------cHHHHHHHhhCCCCCcceEEEEEEcCCC
Confidence            356677899999999999999876544    4999998643211        1136889999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---HcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH---NMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH---~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .|+|||||+||+|.+++..     +++..+..++.|++.||+|||   +.+|+||||||+||+++.++..+++ ||.+..
T Consensus       758 ~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~  831 (968)
T PLN00113        758 AYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGL  831 (968)
T ss_pred             CEEEEeCCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccc
Confidence            9999999999999888742     788999999999999999999   6699999999999999998888775 654432


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ..                                                                   ......||+.|
T Consensus       832 ~~-------------------------------------------------------------------~~~~~~~t~~y  844 (968)
T PLN00113        832 LC-------------------------------------------------------------------TDTKCFISSAY  844 (968)
T ss_pred             cc-------------------------------------------------------------------cCCCccccccc
Confidence            10                                                                   00123688999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH-----HHHHHHHhcC-------CCCCC-------CCChHHH
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-----KETFRNVLMK-------TPEFV-------GQRTALT  315 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-----~~~~~~i~~~-------~~~~~-------~~~~~~~  315 (412)
                      ||||++.+..++.++|||||||++|||++|+.||.....     .+..+.....       .+...       ....++.
T Consensus       845 ~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  924 (968)
T PLN00113        845 VAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVM  924 (968)
T ss_pred             cCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHH
Confidence            999999999999999999999999999999999854211     1111110000       01110       0113577


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +++.+||+.||++||    ++.++++
T Consensus       925 ~l~~~Cl~~~P~~RP----t~~evl~  946 (968)
T PLN00113        925 NLALHCTATDPTARP----CANDVLK  946 (968)
T ss_pred             HHHHhhCcCCchhCc----CHHHHHH
Confidence            899999999999999    5777775

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=291.06  Aligned_cols=248  Identities=22%  Similarity=0.256  Sum_probs=205.9

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      ..+..++||+|+||+||++.+-..+...+.+||||++.....   ......++.|+-+|.+|+|||+++|+++..... +
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~---~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~  772 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTS---PKASIELLDEALRMASLDHPNLLRLLGVCMLST-L  772 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCC---chhhHHHHHHHHHHhcCCCchHHHHhhhcccch-H
Confidence            445668999999999999988877888899999999976543   344566778999999999999999999998766 8


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      .||++|+++|.|.++++.+.. .+-.+....|..||+.|+.|||.+++|||||-.+|+|+..-.++||.|||+|+.....
T Consensus       773 qlvtq~mP~G~LlDyvr~hr~-~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d  851 (1177)
T KOG1025|consen  773 QLVTQLMPLGCLLDYVREHRD-NIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPD  851 (1177)
T ss_pred             HHHHHhcccchHHHHHHHhhc-cccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCcc
Confidence            899999999999998877553 5788899999999999999999999999999999999999999999999999876322


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      ...                                                             -.+....-.+-|||-|
T Consensus       852 ~~e-------------------------------------------------------------y~~~~gK~pikwmale  870 (1177)
T KOG1025|consen  852 EKE-------------------------------------------------------------YSAPGGKVPIKWMALE  870 (1177)
T ss_pred             ccc-------------------------------------------------------------ccccccccCcHHHHHH
Confidence            110                                                             0001112245699999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcC--CCCCCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMK--TPEFVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      .+....|+.++||||+||++||++| |..|+.+....++-..+..+  .+..+.++-++.-++.+||..|+..||.+
T Consensus       871 ~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~f  947 (1177)
T KOG1025|consen  871 SIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTF  947 (1177)
T ss_pred             HhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccH
Confidence            9999999999999999999999997 99999998877764444332  34455677899999999999999999965

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5e-34  Score=271.82  Aligned_cols=253  Identities=24%  Similarity=0.329  Sum_probs=188.8

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHh--hcCCCccce
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS--RLSHPFLPK   87 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~--~l~hpnIv~   87 (412)
                      ...+..-..+.++++.||+|.||.||++++++..      ||||++...     ++  ....||.+|.+  .|+|+||+.
T Consensus       203 lLVQRTiarqI~L~e~IGkGRyGEVwrG~wrGe~------VAVKiF~sr-----dE--~SWfrEtEIYqTvmLRHENILg  269 (513)
T KOG2052|consen  203 LLVQRTIARQIVLQEIIGKGRFGEVWRGRWRGED------VAVKIFSSR-----DE--RSWFRETEIYQTVMLRHENILG  269 (513)
T ss_pred             hHhHHhhhheeEEEEEecCccccceeeccccCCc------eEEEEeccc-----ch--hhhhhHHHHHHHHHhccchhhh
Confidence            3345566788999999999999999999987533      999999432     22  22333555554  558999999


Q ss_pred             eeeeEEeCC----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc--------CceeeeCCCCc
Q 042539           88 LLGSLETDE----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM--------GIAYRDLKPEN  155 (412)
Q Consensus        88 l~~~~~~~~----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~--------~iiHrDlKp~N  155 (412)
                      +++.-..++    .+|||++|-+.|+|++++..   ..++.+....++..+++||++||-.        .|.|||||..|
T Consensus       270 FIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKN  346 (513)
T KOG2052|consen  270 FIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKN  346 (513)
T ss_pred             hhhccccCCCceEEEEEeeecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhcccccccc
Confidence            998765443    69999999999999999876   3499999999999999999999953        49999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ||+.++|...|+|+|||-.....+.                                                       
T Consensus       347 ILVKkn~~C~IADLGLAv~h~~~t~-------------------------------------------------------  371 (513)
T KOG2052|consen  347 ILVKKNGTCCIADLGLAVRHDSDTD-------------------------------------------------------  371 (513)
T ss_pred             EEEccCCcEEEeeceeeEEecccCC-------------------------------------------------------
Confidence            9999999999999999976532211                                                       


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCC----C--CchhhHHHHHHHHHHHhhC----------CCCCCCC----CHHH
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDG----H--EFAVDWWALGILTYEMLYG----------TTPFRGK----NRKE  295 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~----~--~~~~DiwSlGvil~ell~g----------~~Pf~~~----~~~~  295 (412)
                          .-....+..+||.+|||||++...-    +  -+.+||||||.++||++..          ++||.+.    ...+
T Consensus       372 ----~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~e  447 (513)
T KOG2052|consen  372 ----TIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFE  447 (513)
T ss_pred             ----cccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHH
Confidence                2233445679999999999997531    1  2578999999999999842          4677542    2234


Q ss_pred             HHHHHhcCC---CCCCC--CC----hHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          296 TFRNVLMKT---PEFVG--QR----TALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       296 ~~~~i~~~~---~~~~~--~~----~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+++++.-.   |..++  .+    ..+..+++.||..||..|+    ||-.+++
T Consensus       448 eMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRl----tALriKK  498 (513)
T KOG2052|consen  448 EMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARL----TALRIKK  498 (513)
T ss_pred             HHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhh----HHHHHHH
Confidence            444444322   22222  12    3466789999999999999    4555553

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-33  Score=269.78  Aligned_cols=244  Identities=24%  Similarity=0.352  Sum_probs=186.4

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc--CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL--SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l--~hpnIv~l~   89 (412)
                      .+-++++..+++++||+|.||.||+|....      +.||||++...       ..+.+..|.+|.+..  +|+||++++
T Consensus       204 spl~~l~pl~l~eli~~Grfg~V~KaqL~~------~~VAVKifp~~-------~kqs~~~Ek~Iy~lp~m~h~nIl~Fi  270 (534)
T KOG3653|consen  204 SPLLELDPLQLLELIGRGRFGCVWKAQLDN------RLVAVKIFPEQ-------EKQSFQNEKNIYSLPGMKHENILQFI  270 (534)
T ss_pred             cccccCCchhhHHHhhcCccceeehhhccC------ceeEEEecCHH-------HHHHHHhHHHHHhccCccchhHHHhh
Confidence            445668899999999999999999886543      55999998432       344555677776655  699999999


Q ss_pred             eeEEeCC----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc---------CceeeeCCCCce
Q 042539           90 GSLETDE----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM---------GIAYRDLKPENI  156 (412)
Q Consensus        90 ~~~~~~~----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~---------~iiHrDlKp~Ni  156 (412)
                      ++-....    .++||++|-+.|+|.+++...   .++......++..|++||+|||+-         .|+|||||..||
T Consensus       271 ~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNV  347 (534)
T KOG3653|consen  271 GAEKRGTADRMEYWLVTEFHPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNV  347 (534)
T ss_pred             chhccCCccccceeEEeeeccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccce
Confidence            9887655    799999999999999998764   489999999999999999999963         499999999999


Q ss_pred             EEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccc
Q 042539          157 LIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQ  236 (412)
Q Consensus       157 Ll~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (412)
                      |+.++++..|+|||+|..+...               .                                          
T Consensus       348 LvK~DlTccIaDFGLAl~~~p~---------------~------------------------------------------  370 (534)
T KOG3653|consen  348 LVKNDLTCCIADFGLALRLEPG---------------K------------------------------------------  370 (534)
T ss_pred             EEccCCcEEeeccceeEEecCC---------------C------------------------------------------
Confidence            9999999999999999876311               0                                          


Q ss_pred             cccCCCCCCcccccCCCCccceeecCCC-C-----CchhhHHHHHHHHHHHhhCCC------------CCCC-----CCH
Q 042539          237 QSFDNGERSNSFVGTEEYVSPEVVRGDG-H-----EFAVDWWALGILTYEMLYGTT------------PFRG-----KNR  293 (412)
Q Consensus       237 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~-~-----~~~~DiwSlGvil~ell~g~~------------Pf~~-----~~~  293 (412)
                          ....+..-+||.+|||||++.|.- .     -.+.||||+|.+||||++.-.            ||..     .+-
T Consensus       371 ----~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~  446 (534)
T KOG3653|consen  371 ----PQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTL  446 (534)
T ss_pred             ----CCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCH
Confidence                111122368999999999998752 1     257899999999999997532            3321     122


Q ss_pred             HHHHHHHhc--CCCCCCCC------ChHHHHHHHHhhhhCCCccCCC
Q 042539          294 KETFRNVLM--KTPEFVGQ------RTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       294 ~~~~~~i~~--~~~~~~~~------~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      +++...++.  ..|.+++.      ..-+++.|..||..||+.|++.
T Consensus       447 e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA  493 (534)
T KOG3653|consen  447 EEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTA  493 (534)
T ss_pred             HHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhh
Confidence            333333332  22333321      2568899999999999999964

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.98  E-value=5.9e-31  Score=240.26  Aligned_cols=215  Identities=38%  Similarity=0.600  Sum_probs=177.6

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      |.+.+.||.|++|.||++.+..++    ..+|+|.+......   .....+.+|+++++.++|+||+++++++......+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~----~~~~iK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~   73 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTG----ELVAVKVLKKEKTE---KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLY   73 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCC----cEEEEEeeccccch---HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceE
Confidence            678899999999999999887644    34999999766432   23556777999999999999999999999999999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      +++|++.+++|..++..... .+++..+..++.+++.+|.+||++|++|+||+|.||+++.++.++|+|||++.......
T Consensus        74 ~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~  152 (225)
T smart00221       74 LVMEYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDL  152 (225)
T ss_pred             EEEeccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcc
Confidence            99999999999888765432 17899999999999999999999999999999999999999999999999987653210


Q ss_pred             hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcccee
Q 042539          180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  259 (412)
                                                                                    ........++..|++||.
T Consensus       153 --------------------------------------------------------------~~~~~~~~~~~~~~~pe~  170 (225)
T smart00221      153 --------------------------------------------------------------AALLKTVKGTPFYLAPEV  170 (225)
T ss_pred             --------------------------------------------------------------cccccceeccCCcCCHhH
Confidence                                                                          001223467889999999


Q ss_pred             e-cCCCCCchhhHHHHHHHHHHHhhCCCCCCC-CCHH-HHHHHHhcCC
Q 042539          260 V-RGDGHEFAVDWWALGILTYEMLYGTTPFRG-KNRK-ETFRNVLMKT  304 (412)
Q Consensus       260 l-~~~~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~-~~~~~i~~~~  304 (412)
                      + ....++.++|+||||+++|+|++|+.||.. .+.. .+...+..+.
T Consensus       171 ~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~~~~  218 (225)
T smart00221      171 LLGGKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWSFGV  218 (225)
T ss_pred             hcCCCCCCchhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHhcCC
Confidence            8 666678899999999999999999999987 4444 5555555554

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.97  E-value=1e-30  Score=234.57  Aligned_cols=213  Identities=39%  Similarity=0.633  Sum_probs=181.0

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeecc
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYC  105 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~  105 (412)
                      ||+|++|.||++.+...+    ..+++|++.......   ....+.+|+++++.+.|++|+++++++......++++|++
T Consensus         1 l~~g~~~~v~~~~~~~~~----~~~~~K~~~~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~   73 (215)
T cd00180           1 LGEGGFGTVYLARDKKTG----KKVAIKIIKKEDSSS---LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYC   73 (215)
T ss_pred             CCcCCceEEEEEEecCCC----cEEEEEEeccccchh---HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecC
Confidence            689999999999887633    449999997654321   3466778999999999999999999999999999999999


Q ss_pred             CCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CCCEEEccccccchhhchhhhhhh
Q 042539          106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFDLSRNLVKKTAFEKQ  184 (412)
Q Consensus       106 ~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g~vkL~DFGla~~~~~~~~~~~~  184 (412)
                      .|++|..++.... ..++...+..++.+++.+|.+||+.|++|+||+|.||+++. .+.++|+|||.+........    
T Consensus        74 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~----  148 (215)
T cd00180          74 EGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS----  148 (215)
T ss_pred             CCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc----
Confidence            9999988876542 34899999999999999999999999999999999999999 89999999999875421100    


Q ss_pred             cccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC-
Q 042539          185 SLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD-  263 (412)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~-  263 (412)
                                                                                 ......+...|++||.+... 
T Consensus       149 -----------------------------------------------------------~~~~~~~~~~~~~pe~~~~~~  169 (215)
T cd00180         149 -----------------------------------------------------------LLKTIVGTPAYMAPEVLLGKG  169 (215)
T ss_pred             -----------------------------------------------------------hhhcccCCCCccChhHhcccC
Confidence                                                                       11234577889999999887 


Q ss_pred             CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCC
Q 042539          264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV  343 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~  343 (412)
                      .++.++|+|+||+++|+|                              ..+.+++.+||..||.+|+    +++++++|+
T Consensus       170 ~~~~~~D~~~lg~~~~~l------------------------------~~~~~~l~~~l~~~p~~R~----~~~~l~~~~  215 (215)
T cd00180         170 YYSEKSDIWSLGVILYEL------------------------------PELKDLIRKMLQKDPEKRP----SAKEILEHL  215 (215)
T ss_pred             CCCchhhhHHHHHHHHHH------------------------------HHHHHHHHHHhhCCcccCc----CHHHHhhCC
Confidence            778999999999999999                              6789999999999999999    688888764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.6e-32  Score=293.07  Aligned_cols=230  Identities=17%  Similarity=0.234  Sum_probs=156.0

Q ss_pred             cCC-CccceeeeeE-------EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeC
Q 042539           80 LSH-PFLPKLLGSL-------ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL  151 (412)
Q Consensus        80 l~h-pnIv~l~~~~-------~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDl  151 (412)
                      ++| .||++++++|       .....++++||++ +++|..++... ...+++.+++.++.||+.||.|||++||+||||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDl  106 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNV  106 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            345 5888888887       2334678888987 66998887643 345999999999999999999999999999999


Q ss_pred             CCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccC-CC
Q 042539          152 KPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSAR-VS  230 (412)
Q Consensus       152 Kp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  230 (412)
                      ||+||||+..|.+|++|||++...........+                               ..+.|........ ..
T Consensus       107 KP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~k-------------------------------i~DfG~a~~~~~~~~~  155 (793)
T PLN00181        107 RPSCFVMSSFNHVSFIESASCSDSGSDEDATTK-------------------------------SREIGSSRREEILSER  155 (793)
T ss_pred             CchhEEEcccCcEEEeeccccCcccccccCccc-------------------------------cccccccccccccccc
Confidence            999999998888888888887643211100000                               0001111000000 00


Q ss_pred             Cc-ccccc-ccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CCC
Q 042539          231 PV-SRRQQ-SFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPE  306 (412)
Q Consensus       231 ~~-~~~~~-~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~~  306 (412)
                      .. ..... ...........+||+.|||||++.+..|+.++|||||||+||||++|.+|+....  ..+..+...  .+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~--~~~~~~~~~~~~~~  233 (793)
T PLN00181        156 RIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS--RTMSSLRHRVLPPQ  233 (793)
T ss_pred             chhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH--HHHHHHHHhhcChh
Confidence            00 00000 0000111234579999999999999999999999999999999999999886432  122222111  111


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      .........+++.+||++||.+||    ++.++++||||...
T Consensus       234 ~~~~~~~~~~~~~~~L~~~P~~Rp----s~~eil~h~~~~~~  271 (793)
T PLN00181        234 ILLNWPKEASFCLWLLHPEPSCRP----SMSELLQSEFINEP  271 (793)
T ss_pred             hhhcCHHHHHHHHHhCCCChhhCc----ChHHHhhchhhhhh
Confidence            122345678999999999999999    68999999999763

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.5e-32  Score=243.37  Aligned_cols=236  Identities=23%  Similarity=0.349  Sum_probs=183.3

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeee-eEEe
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLG-SLET   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~-~~~~   94 (412)
                      .+.|.|.+.||+|.||++-+|+++.++.    .+++|.+.+..     ...+.+.+|...--.|. |.||+.-|+ .|++
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t----~ivlKavp~p~-----tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt   93 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKT----RIVLKAVPRPQ-----TTQADFVREFHYSFFLSPHQHIIDTYEVAFQT   93 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCce----EEEeeccCcch-----hhHHHHHHHhccceeeccchhhhHHHHHHhhc
Confidence            3689999999999999999999988554    49999997654     23455667887766775 899999887 5888


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC--CCEEEcccccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS--GHVTLTDFDLS  172 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~--g~vkL~DFGla  172 (412)
                      .+.+.+++|||+-|||.+-+   ...++-|...+.++.|+++||+|+|++++||||||.+||||-..  -.|||||||++
T Consensus        94 ~d~YvF~qE~aP~gdL~snv---~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t  170 (378)
T KOG1345|consen   94 SDAYVFVQEFAPRGDLRSNV---EAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLT  170 (378)
T ss_pred             CceEEEeeccCccchhhhhc---CcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccc
Confidence            89999999999999996543   33458999999999999999999999999999999999999654  47999999988


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....-                                                                  ....--+.
T Consensus       171 ~k~g~t------------------------------------------------------------------V~~~~~~~  184 (378)
T KOG1345|consen  171 RKVGTT------------------------------------------------------------------VKYLEYVN  184 (378)
T ss_pred             cccCce------------------------------------------------------------------ehhhhhhc
Confidence            643211                                                                  11122355


Q ss_pred             CCccceeecC---CC--CCchhhHHHHHHHHHHHhhCCCCCCCCCH----HHHHHHHhcCC-C----CCCCCChHHHHHH
Q 042539          253 EYVSPEVVRG---DG--HEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKT-P----EFVGQRTALTDLI  318 (412)
Q Consensus       253 ~Y~APE~l~~---~~--~~~~~DiwSlGvil~ell~g~~Pf~~~~~----~~~~~~i~~~~-~----~~~~~~~~~~dli  318 (412)
                      .|-+||+...   ..  .++.+|+|.||+++|.+++|.+||.....    ...+.+...+. +    .+...++.+..+.
T Consensus       185 ~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~~a~r~F  264 (378)
T KOG1345|consen  185 NYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSEKALRLF  264 (378)
T ss_pred             ccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhcccCHHHHHHH
Confidence            7899997643   22  37889999999999999999999986432    22233333222 2    2345678899999


Q ss_pred             HHhhhhCCCccC
Q 042539          319 QRLLEKDPVKRL  330 (412)
Q Consensus       319 ~~~L~~dP~~R~  330 (412)
                      ++-|..++++|.
T Consensus       265 kk~lt~~~~drc  276 (378)
T KOG1345|consen  265 KKSLTPRFKDRC  276 (378)
T ss_pred             HHhcCCcccccc
Confidence            999999999994

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.97  E-value=2.8e-31  Score=275.32  Aligned_cols=262  Identities=35%  Similarity=0.614  Sum_probs=198.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ...-++|..++.|..|+||.||+++++.+    +++||+| |.|.++-.+           .++....+|++|       
T Consensus        79 ~p~e~df~~IklisngAygavylvrh~~t----rqrfa~k-iNkq~lilR-----------nilt~a~npfvv-------  135 (1205)
T KOG0606|consen   79 APSESDFNTIKLISNGAYGAVYLVRHKET----RQRFAMK-INKQNLILR-----------NILTFAGNPFVV-------  135 (1205)
T ss_pred             CCCccccceeEeeccCCCCceeeeecccc----ccchhhc-ccccchhhh-----------ccccccCCccee-------
Confidence            44567999999999999999999999874    4559994 544433111           155555677776       


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                                    ||-..++...+  .++.+        ++.+++|||+.||+|||+||+|.+|+.-|++|++|||+++
T Consensus       136 --------------gDc~tllk~~g--~lPvd--------mvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk  191 (1205)
T KOG0606|consen  136 --------------GDCATLLKNIG--PLPVD--------MVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSK  191 (1205)
T ss_pred             --------------chhhhhcccCC--CCcch--------hhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhh
Confidence                          44444444332  24322        3889999999999999999999999999999999999998


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ...-...                                       +..+     .-.|+.    +...-.....||||.
T Consensus       192 ~GLms~a---------------------------------------tnl~-----eg~I~k----~t~Ef~dKqvcgTPe  223 (1205)
T KOG0606|consen  192 KGLMSLA---------------------------------------TNLK-----EGHIEK----DTHEFQDKQVCGTPE  223 (1205)
T ss_pred             hhhhhcc---------------------------------------chhh-----hcchHH----HHHHhhhccccCCcc
Confidence            7632110                                       0000     011111    111122345699999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC----CChHHHHHHHHhhhhCCCcc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG----QRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~----~~~~~~dli~~~L~~dP~~R  329 (412)
                      |+|||++.-.+|++.+||||+|+|+||++.|..||.|...++++..++.....++.    ..++++++|.+||+.+|..|
T Consensus       224 yiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qnp~~R  303 (1205)
T KOG0606|consen  224 YIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQNPLCR  303 (1205)
T ss_pred             ccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhChHhh
Confidence            99999999999999999999999999999999999999999999998876655543    45899999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCchhhh
Q 042539          330 LGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTE  372 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~~~~~  372 (412)
                      .+.. ++-++++|.||...||.-+-. ++.+|+|..+..+.+.
T Consensus       304 lgt~-ga~evk~h~ff~~LDw~~llR-qkaefvpql~~eddts  344 (1205)
T KOG0606|consen  304 LGTG-GALEVKQHGFFQLLDWKSLLR-QKAEFVPQLESEDDTS  344 (1205)
T ss_pred             cccc-hhhhhhhccceeecccchhhh-hhccccccccccccch
Confidence            9754 789999999999999985532 3567888777665443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.96  E-value=6.6e-27  Score=222.55  Aligned_cols=259  Identities=34%  Similarity=0.517  Sum_probs=201.9

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC-ccceeeeeEEeCCeE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP-FLPKLLGSLETDEFL   98 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp-nIv~l~~~~~~~~~~   98 (412)
                      |.+.+.||.|+||.||++.+.       ..+++|++.+..... ......+.+|+.+++.+.|+ +|+++++.+......
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~-------~~~~~k~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~   73 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR-------KLVALKVLAKKLESK-SKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSL   73 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec-------cEEEEEeechhhccc-hhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEE
Confidence            789999999999999999887       338999997765432 23566778899999999987 799999999888889


Q ss_pred             EEEeeccCCCCchhHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEccccccchhh
Q 042539           99 AWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDLSRNLV  176 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~-~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFGla~~~~  176 (412)
                      +++++++.|+++..++..... ..+.+..+..++.|++.+++|+|+.|++|||+||+||+++..+ .++++|||+++...
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~  153 (384)
T COG0515          74 YLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLP  153 (384)
T ss_pred             EEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecC
Confidence            999999999999855444321 1589999999999999999999999999999999999999998 79999999987432


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ......                                                         .........+||..|+|
T Consensus       154 ~~~~~~---------------------------------------------------------~~~~~~~~~~~t~~~~~  176 (384)
T COG0515         154 DPGSTS---------------------------------------------------------SIPALPSTSVGTPGYMA  176 (384)
T ss_pred             CCCccc---------------------------------------------------------cccccccccccccccCC
Confidence            110000                                                         00013456789999999


Q ss_pred             ceeecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCH----HHHHHHHhcCCCC--CCCC--C------hHHHHHHH
Q 042539          257 PEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPE--FVGQ--R------TALTDLIQ  319 (412)
Q Consensus       257 PE~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~----~~~~~~i~~~~~~--~~~~--~------~~~~dli~  319 (412)
                      ||.+.+   ..++...|+||+|++++++++|..||.....    ......+......  ....  .      ..+.+++.
T Consensus       177 pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (384)
T COG0515         177 PEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLK  256 (384)
T ss_pred             HHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHHH
Confidence            999988   5678999999999999999999999888763    3444444333222  1111  1      47889999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +++..+|..|.+    ..+...+.|...
T Consensus       257 ~~~~~~~~~r~~----~~~~~~~~~~~~  280 (384)
T COG0515         257 KLLAKDPKNRLS----SSSDLSHDLLAH  280 (384)
T ss_pred             HHHhcCchhcCC----HHHHhhchHhhC
Confidence            999999999994    566565555443

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-28  Score=227.86  Aligned_cols=255  Identities=21%  Similarity=0.224  Sum_probs=203.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCC-CceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~-~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .+..+++++...+-+|.||.||.+.++..+...+ +.|-+|.++..   ..+.....++.|.-.+..+.|||+..+.++.
T Consensus       280 ~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~---AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  280 TVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH---ASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             hhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc---ccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            4556778888999999999999997776554433 34667776432   2344566778899999999999999999987


Q ss_pred             Ee-CCeEEEEeeccCCCCchhHHHhh------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEE
Q 042539           93 ET-DEFLAWAVPYCPGGDLNVLRYKQ------NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT  165 (412)
Q Consensus        93 ~~-~~~~~lv~e~~~gg~L~~~~~~~------~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vk  165 (412)
                      .. ...-++++.+..-|.|..++..-      ....++..+...++.|+..|++|||++|+||.||...|++|++.-.+|
T Consensus       357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVk  436 (563)
T KOG1024|consen  357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVK  436 (563)
T ss_pred             eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEE
Confidence            54 45678888999889998887632      223578889999999999999999999999999999999999999999


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|=.+++.+-.....                                 |-   |..+                      
T Consensus       437 ltDsaLSRDLFP~DYh---------------------------------cL---GDnE----------------------  458 (563)
T KOG1024|consen  437 LTDSALSRDLFPGDYH---------------------------------CL---GDNE----------------------  458 (563)
T ss_pred             eccchhccccCccccc---------------------------------cc---CCCC----------------------
Confidence            9999999876322110                                 00   0000                      


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhh
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L  322 (412)
                         -....||+||.+....|+.++|+|||||++|||+| |+.|+...+..++..-+..+.  -...++++++..++..||
T Consensus       459 ---nRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCW  535 (563)
T KOG1024|consen  459 ---NRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCW  535 (563)
T ss_pred             ---CCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceecCCCCCcHHHHHHHHHHH
Confidence               12346999999999999999999999999999997 999999999998877666544  344578999999999999


Q ss_pred             hhCCCccCCC
Q 042539          323 EKDPVKRLGY  332 (412)
Q Consensus       323 ~~dP~~R~~~  332 (412)
                      ...|++||++
T Consensus       536 allpeeRPsf  545 (563)
T KOG1024|consen  536 ALLPEERPSF  545 (563)
T ss_pred             hcCcccCCCH
Confidence            9999999964

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.1e-29  Score=260.81  Aligned_cols=263  Identities=25%  Similarity=0.397  Sum_probs=197.8

Q ss_pred             cCc-eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecch--hhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           18 DNL-KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        18 ~~y-~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~--~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +.| .....+|.|++|.|+.+........    ++.|.....  ...........+..|.-+-..+.|+||+..+..+++
T Consensus       317 ~~y~~~~~~~g~ga~g~~~~~~~~~~~~~----~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~  392 (601)
T KOG0590|consen  317 EKYGKPGRVLGSGAYGSVRIAKRRSDLKS----FPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQE  392 (601)
T ss_pred             cccCCccceeeecccCceEEEEecCCCcc----chhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhh
Confidence            434 5778999999998887766543332    444433211  111122222235668888888899999888887776


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ....+-.||||++ ||..++...  +.++..++..++.|++.||+|+|+.||.|||||++|++++.+|.+||+|||.+..
T Consensus       393 ~~~~~~~mE~~~~-Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~v  469 (601)
T KOG0590|consen  393 IDGILQSMEYCPY-DLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASV  469 (601)
T ss_pred             cccchhhhhcccH-HHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCccee
Confidence            6655556999999 998877654  3589999999999999999999999999999999999999999999999999876


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +....+                                                           ........++|+..|
T Consensus       470 f~~~~e-----------------------------------------------------------~~~~~~~g~~gS~pY  490 (601)
T KOG0590|consen  470 FRYPWE-----------------------------------------------------------KNIHESSGIVGSDPY  490 (601)
T ss_pred             eccCcc-----------------------------------------------------------hhhhhhcCcccCCcC
Confidence            632211                                                           111334567999999


Q ss_pred             ccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHH-HHHhcCCC---------CCCCCChHHHHHHHHhhh
Q 042539          255 VSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETF-RNVLMKTP---------EFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       255 ~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~-~~i~~~~~---------~~~~~~~~~~dli~~~L~  323 (412)
                      +|||++.+..| ....||||.|++++.|++|+.||......+.. ........         .+-.++.+.+.+|.+||+
T Consensus       491 ~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~  570 (601)
T KOG0590|consen  491 LAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQ  570 (601)
T ss_pred             cCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHcc
Confidence            99999999998 56799999999999999999999775544331 11111100         112345678899999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      .||.+|+    |+++|++.+||+.+.-
T Consensus       571 ~~P~~R~----ti~~i~~d~W~~~i~~  593 (601)
T KOG0590|consen  571 LDPTKRI----TIEQILNDEWIRSIEC  593 (601)
T ss_pred             CChhhee----cHHHHhhChHhhhcce
Confidence            9999999    7999999999998753

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.95  E-value=1.9e-28  Score=216.65  Aligned_cols=158  Identities=20%  Similarity=0.209  Sum_probs=126.5

Q ss_pred             CCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhccc
Q 042539          108 GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN  187 (412)
Q Consensus       108 g~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~  187 (412)
                      |+|.+++... ...+++.+++.++.|++.||.|||+++      ||+|||++.++.+|+  ||+++....          
T Consensus         1 GsL~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~----------   61 (176)
T smart00750        1 VSLADILEVR-GRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTP----------   61 (176)
T ss_pred             CcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeecc----------
Confidence            6787777653 345999999999999999999999999      999999999999999  998865311          


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCc
Q 042539          188 NNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEF  267 (412)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~  267 (412)
                                                                                ....||+.|||||++.+..++.
T Consensus        62 ----------------------------------------------------------~~~~g~~~y~aPE~~~~~~~~~   83 (176)
T smart00750       62 ----------------------------------------------------------EQSRVDPYFMAPEVIQGQSYTE   83 (176)
T ss_pred             ----------------------------------------------------------ccCCCcccccChHHhcCCCCcc
Confidence                                                                      0115889999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCCCCC--------CCCCh--HHHHHHHHhhhhCCCccCCCCCCh
Q 042539          268 AVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKTPEF--------VGQRT--ALTDLIQRLLEKDPVKRLGYLRGA  336 (412)
Q Consensus       268 ~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~~~~--------~~~~~--~~~dli~~~L~~dP~~R~~~~~~~  336 (412)
                      ++|||||||++|||++|+.||...... ..+..+.......        ...+.  .+.++|.+||..||.+||    ++
T Consensus        84 ~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp----~~  159 (176)
T smart00750       84 KADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRRE----AA  159 (176)
T ss_pred             hhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhccccccc----CH
Confidence            999999999999999999999765432 3333333222111        11222  699999999999999999    68


Q ss_pred             hhhhcCCCCC
Q 042539          337 CEIKEHVFFK  346 (412)
Q Consensus       337 ~e~l~h~ff~  346 (412)
                      .++++|+|+.
T Consensus       160 ~~ll~~~~~~  169 (176)
T smart00750      160 NHYLAHCRAL  169 (176)
T ss_pred             HHHHHHHHHH
Confidence            9999999864

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.95  E-value=1.9e-27  Score=231.96  Aligned_cols=152  Identities=20%  Similarity=0.179  Sum_probs=118.5

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh-hhhHHHHHHHHHHHHHHhhcCCCccce
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL-HAKHEAERRARWEIRVLSRLSHPFLPK   87 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~~~Ei~il~~l~hpnIv~   87 (412)
                      |......-.++|.+.+.||+|+||+||+|.++...   ++.||||++..... .........+.+|+++|++++|+||+.
T Consensus         9 ~~~~~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~---~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~   85 (365)
T PRK09188          9 PGDQIPALSARFVETAVLKRDVFSTVERGYFAGDP---GTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVP   85 (365)
T ss_pred             cccccccccCCceEccEEeecCcEEEEEEEEcCCC---CeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCc
Confidence            33445667789999999999999999999887532   23379998753211 012334566888999999999999985


Q ss_pred             -eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeC-CCCceEEccCCCEE
Q 042539           88 -LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL-KPENILIRQSGHVT  165 (412)
Q Consensus        88 -l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDl-Kp~NiLl~~~g~vk  165 (412)
                       ++++    +..|+|||||.|++|...   ..   ..   ...++.|++.||.|||++||+|||| ||+|||++.+|.+|
T Consensus        86 ~l~~~----~~~~LVmE~~~G~~L~~~---~~---~~---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ik  152 (365)
T PRK09188         86 QLLAT----GKDGLVRGWTEGVPLHLA---RP---HG---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAA  152 (365)
T ss_pred             EEEEc----CCcEEEEEccCCCCHHHh---Cc---cc---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEE
Confidence             5442    457999999999998521   11   11   1467899999999999999999999 99999999999999


Q ss_pred             Eccccccchhh
Q 042539          166 LTDFDLSRNLV  176 (412)
Q Consensus       166 L~DFGla~~~~  176 (412)
                      |+|||+|+.+.
T Consensus       153 LiDFGlA~~~~  163 (365)
T PRK09188        153 VIDFQLASVFR  163 (365)
T ss_pred             EEECccceecc
Confidence            99999998763

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-26  Score=225.66  Aligned_cols=251  Identities=26%  Similarity=0.347  Sum_probs=189.3

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC----CCccceeeeeE-E
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS----HPFLPKLLGSL-E   93 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~----hpnIv~l~~~~-~   93 (412)
                      +|++.+.||+|+||.||+|.+....   ...+|+|+.........    ..+..|+.++..+.    ..++..+++.+ .
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~---~~~~a~K~e~~~~~~~~----~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~   91 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEK---NKEYAKKLEKKELGSKP----SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRS   91 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCC---CeeEEEEEEEecccCCC----ccchhHHHHHHHHhhhcCCCCCCEEEEeccC
Confidence            8999999999999999999987654   33489998866432111    13444888888887    26899999999 5


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-----CEEEcc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-----HVTLTD  168 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-----~vkL~D  168 (412)
                      .+..-|+||+.+ |.+|.++......+.|+...+..++.|++.+|++||+.|++||||||+|+++...+     .+.|.|
T Consensus        92 ~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llD  170 (322)
T KOG1164|consen   92 TEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLD  170 (322)
T ss_pred             CCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEe
Confidence            778899999999 89999887666667899999999999999999999999999999999999998763     599999


Q ss_pred             ccccchh--hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          169 FDLSRNL--VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       169 FGla~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      ||+|+..  ........+                                                       ..-....
T Consensus       171 fGlar~~~~~~~~~~~~~-------------------------------------------------------~~r~~~~  195 (322)
T KOG1164|consen  171 FGLARRFKYVGDSGGNLR-------------------------------------------------------PPRPQKG  195 (322)
T ss_pred             cCCCccccccCCCCcccc-------------------------------------------------------cCCCCcc
Confidence            9999833  211100000                                                       0001123


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH---HHHHHhcCCC-C-C-CCCChHHHHHHHH
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE---TFRNVLMKTP-E-F-VGQRTALTDLIQR  320 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~---~~~~i~~~~~-~-~-~~~~~~~~dli~~  320 (412)
                      .+.||..|+++.+..+...+.+.|+||++-++.+++.|..||.+.....   .+.+...... . + ...+..+.++...
T Consensus       196 ~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (322)
T KOG1164|consen  196 LFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKILEY  275 (322)
T ss_pred             CCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHHHHH
Confidence            5679999999999999999999999999999999999999998765322   2222221111 1 1 2234567777777


Q ss_pred             hhhhCCCccCCC
Q 042539          321 LLEKDPVKRLGY  332 (412)
Q Consensus       321 ~L~~dP~~R~~~  332 (412)
                      +-..+...+|.+
T Consensus       276 ~~~~~~~~~Pdy  287 (322)
T KOG1164|consen  276 IDSLDYEDKPDY  287 (322)
T ss_pred             hhccCCcCCCCH
Confidence            767788888843

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.94  E-value=2.7e-26  Score=203.67  Aligned_cols=250  Identities=17%  Similarity=0.235  Sum_probs=191.5

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~   92 (412)
                      .+....|+++++||.|+||-+|++.....+..    ||||+-....-+      -.+..|.++...|+ ...|..+..++
T Consensus        11 ~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~----VAiK~Es~~a~h------pqL~yEskvY~iL~~g~GiP~i~~y~   80 (341)
T KOG1163|consen   11 LIVGGKYKLVRKIGSGSFGDIYLGISITSGEE----VAIKLESSKAKH------PQLLYESKVYRILQGGVGIPHIRHYG   80 (341)
T ss_pred             heeccceEEEEeecCCchhheeeeeeccCCce----EEEEeecccCCC------cchhHHHHHHHHhccCCCCchhhhhc
Confidence            46678999999999999999999988876555    999987543221      23445899999998 47899999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC---CCEEEccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS---GHVTLTDF  169 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~---g~vkL~DF  169 (412)
                      .+..+-.+||+++ |.+|.++..-- .+.|+..++..++.|++.-++|+|.+++|||||||+|+|+.-+   ..+.|+||
T Consensus        81 ~e~~ynvlVMdLL-GPsLEdLfnfC-~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDF  158 (341)
T KOG1163|consen   81 TEKDYNVLVMDLL-GPSLEDLFNFC-SRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDF  158 (341)
T ss_pred             cccccceeeeecc-CccHHHHHHHH-hhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEec
Confidence            9999999999999 88998775543 3469999999999999999999999999999999999999754   56999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+.+.+......                                                        -.-.......
T Consensus       159 GLaKky~d~~t~~H--------------------------------------------------------Ipyre~r~lt  182 (341)
T KOG1163|consen  159 GLAKKYRDIRTRQH--------------------------------------------------------IPYREDRNLT  182 (341)
T ss_pred             cchhhhcccccccc--------------------------------------------------------CccccCCccc
Confidence            99998743321110                                                        1112234567


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC---HHHHHHHHhcCCCC------CCCCChHHHHHHHH
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN---RKETFRNVLMKTPE------FVGQRTALTDLIQR  320 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---~~~~~~~i~~~~~~------~~~~~~~~~dli~~  320 (412)
                      ||.+|.+--...+...+..-|+=|+|.+|.++.-|..||.|..   ..+.+++|......      ..+.+.++.-.++.
T Consensus       183 GTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y  262 (341)
T KOG1163|consen  183 GTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNY  262 (341)
T ss_pred             eeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHH
Confidence            9999999888888878899999999999999999999999843   33445555443322      23455666666666


Q ss_pred             hhhhCCCccCC
Q 042539          321 LLEKDPVKRLG  331 (412)
Q Consensus       321 ~L~~dP~~R~~  331 (412)
                      |=...-++-|.
T Consensus       263 ~R~L~F~E~Pd  273 (341)
T KOG1163|consen  263 CRGLGFEEKPD  273 (341)
T ss_pred             HhhcCCCCCCc
Confidence            65555555443

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.93  E-value=7e-26  Score=209.31  Aligned_cols=215  Identities=24%  Similarity=0.357  Sum_probs=173.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~   96 (412)
                      -.|++.++||+|+||+.+++...-    ++++||||.-....-      .-.+..|.+..+.|. .+.|...|.+.+.+.
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~----nne~VAIKfEPrkS~------APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~   97 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLY----NNEPVAIKFEPRKSE------APQLRDEYRTYKLLGGTEGIPQVYYFGQEGK   97 (449)
T ss_pred             ccceeccccccCcceeeecccccc----cCceEEEEeccccCC------cchHHHHHHHHHHHcCCCCCCceeeeccccc
Confidence            479999999999999999865544    566799997644321      223444888888886 799999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-----CEEEccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-----HVTLTDFDL  171 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-----~vkL~DFGl  171 (412)
                      +-.||||++ |-+|.++...-+ +.|+...+..++.|++.-++|+|++++|+|||||+|+||..-|     .+.|+|||+
T Consensus        98 ~NiLVidLL-GPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGm  175 (449)
T KOG1165|consen   98 YNILVIDLL-GPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGM  175 (449)
T ss_pred             hhhhhhhhh-CcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccc
Confidence            999999999 889988876644 5799999999999999999999999999999999999997654     489999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.+.+..-...                                                        ..-...-+..||
T Consensus       176 AK~YrDp~TkqH--------------------------------------------------------IPYrE~KSLsGT  199 (449)
T KOG1165|consen  176 AKEYRDPKTKQH--------------------------------------------------------IPYREHKSLSGT  199 (449)
T ss_pred             hhhhcCcccccc--------------------------------------------------------Cccccccccccc
Confidence            998743211000                                                        011123467799


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC---CHHHHHHHH
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK---NRKETFRNV  300 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~---~~~~~~~~i  300 (412)
                      .+||+--...|...+.+-|+=|||-+++++|-|..||.|.   +..+-+++|
T Consensus       200 ARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKI  251 (449)
T KOG1165|consen  200 ARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKI  251 (449)
T ss_pred             eeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHh
Confidence            9999999999999999999999999999999999999884   344445444

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.92  E-value=7.7e-25  Score=199.66  Aligned_cols=142  Identities=20%  Similarity=0.191  Sum_probs=114.2

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHH------HHHHHHHHhhcCCCccceee
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR------ARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~------~~~Ei~il~~l~hpnIv~l~   89 (412)
                      --++|+++++||.|+||.||++.+.  +.    .+|||++....... +....+      +.+|++.+.++.|++|..+.
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~~--~~----~~iiKvf~~~~~~~-~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~  101 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDTD--YG----KYILKVFAPKVKRT-ERFLKSFVKGDYYENLIVQTDRVRSEGLASLN  101 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEecC--CC----cEEEEEechhcCch-HHHHHhhhhhHHHHHHHHHHHHHHHCCCCcce
Confidence            3578999999999999999997552  22    29999997654322 233333      57899999999999999999


Q ss_pred             eeEEeC--------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           90 GSLETD--------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        90 ~~~~~~--------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      +++...        ...+++|||++|.+|.++..      +++.    ...+++.+|..+|++|++|||+||+||+++.+
T Consensus       102 d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~~----~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~  171 (232)
T PRK10359        102 DFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE------ISED----VKAKIKASIESLHQHGMVSGDPHKGNFIVSKN  171 (232)
T ss_pred             EeeeecccccccccCCeEEEEEEECCccHHHhhh------ccHH----HHHHHHHHHHHHHHcCCccCCCChHHEEEeCC
Confidence            987643        35899999999999866521      3332    35699999999999999999999999999999


Q ss_pred             CCEEEccccccchh
Q 042539          162 GHVTLTDFDLSRNL  175 (412)
Q Consensus       162 g~vkL~DFGla~~~  175 (412)
                      | ++|+|||.++..
T Consensus       172 g-i~liDfg~~~~~  184 (232)
T PRK10359        172 G-LRIIDLSGKRCT  184 (232)
T ss_pred             C-EEEEECCCcccc
Confidence            9 999999987654

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.91  E-value=3.2e-24  Score=192.47  Aligned_cols=144  Identities=21%  Similarity=0.192  Sum_probs=109.3

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH----------------------HHHHHHHHHHHHHhh
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH----------------------EAERRARWEIRVLSR   79 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~----------------------~~~~~~~~Ei~il~~   79 (412)
                      +...||+|+||.||+|.+. ++    +.||||+++........                      .......+|++++..
T Consensus         1 ~~~~ig~G~~~~Vy~a~~~-~g----~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   75 (190)
T cd05147           1 INGCISTGKEANVYHATTA-NG----EERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKR   75 (190)
T ss_pred             CCCccccccceEEEEEECC-CC----CEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999875 33    45999999765321111                      112334569999999


Q ss_pred             cCCCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHH-HHcCceeeeCCCCceEE
Q 042539           80 LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL-HNMGIAYRDLKPENILI  158 (412)
Q Consensus        80 l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yL-H~~~iiHrDlKp~NiLl  158 (412)
                      +.+++|....... ... .+|||||+.|+++......  ...+++..+..++.|++.+|.|+ |+.||+||||||+|||+
T Consensus        76 l~~~~v~~p~~~~-~~~-~~iVmE~i~g~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli  151 (190)
T cd05147          76 LVTAGIPCPEPIL-LKS-HVLVMEFIGDDGWAAPRLK--DAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLY  151 (190)
T ss_pred             HHHCCCCCCcEEE-ecC-CEEEEEEeCCCCCcchhhh--cCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEE
Confidence            9887764433322 222 3899999999877544322  24589999999999999999999 79999999999999999


Q ss_pred             ccCCCEEEccccccchh
Q 042539          159 RQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~  175 (412)
                      + ++.++|+|||+|...
T Consensus       152 ~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         152 H-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             E-CCcEEEEEccccccC
Confidence            8 588999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.91  E-value=5e-25  Score=229.29  Aligned_cols=244  Identities=21%  Similarity=0.269  Sum_probs=181.2

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +|...+.||++.|=+|.+|++....      |+|||+-+..-. .-....+++ .|++ ...+++||++.+.-+..++..
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~------vVvKVFvk~~p~~sL~~~~qrL-~~ik-~~l~~~pn~lPfqk~~~t~kA   95 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL------VVVKVFVKQDPTISLRPFKQRL-EEIK-FALMKAPNCLPFQKVLVTDKA   95 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce------EEEEEEeccCCCCCchHHHHHH-HHHH-HHhhcCCcccchHHHHHhhHH
Confidence            7888999999999999998876422      899999776522 222344444 3666 777789999999999889999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|||-.|+.. +|++.+..+.  -+..-+.+.|+.|++.||.-+|..||+|||||.|||||+.-+.+.|+||..-+.   
T Consensus        96 AylvRqyvkh-nLyDRlSTRP--FL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKP---  169 (1431)
T KOG1240|consen   96 AYLVRQYVKH-NLYDRLSTRP--FLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKP---  169 (1431)
T ss_pred             HHHHHHHHhh-hhhhhhccch--HHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCC---
Confidence            9999999955 5555544433  378889999999999999999999999999999999999999999999975432   


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                     .=-.++|+..+-++.+                                      +-..-.+|+||
T Consensus       170 ---------------tYLPeDNPadf~fFFD--------------------------------------TSrRRtCYiAP  196 (1431)
T KOG1240|consen  170 ---------------TYLPEDNPADFTFFFD--------------------------------------TSRRRTCYIAP  196 (1431)
T ss_pred             ---------------ccCCCCCcccceEEEe--------------------------------------cCCceeeecCh
Confidence                           1222344444433332                                      11122369999


Q ss_pred             eeecCC----------C-CCchhhHHHHHHHHHHHhh-CCCCCCCC-----------CHHHHHHHHhcCCCCCCCCChHH
Q 042539          258 EVVRGD----------G-HEFAVDWWALGILTYEMLY-GTTPFRGK-----------NRKETFRNVLMKTPEFVGQRTAL  314 (412)
Q Consensus       258 E~l~~~----------~-~~~~~DiwSlGvil~ell~-g~~Pf~~~-----------~~~~~~~~i~~~~~~~~~~~~~~  314 (412)
                      |.+...          + .+++.||||+||+++||++ |++||.-.           +.+..+++|         .+..+
T Consensus       197 ERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~I---------ed~~~  267 (1431)
T KOG1240|consen  197 ERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKI---------EDVSL  267 (1431)
T ss_pred             HhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHHHhC---------cCccH
Confidence            987542          2 4678999999999999986 89999531           111122211         12468


Q ss_pred             HHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          315 TDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       315 ~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +.+|..|++.||++|+    .|++.|+-
T Consensus       268 Rnlil~Mi~rdPs~Rl----SAedyL~~  291 (1431)
T KOG1240|consen  268 RNLILSMIQRDPSKRL----SAEDYLQK  291 (1431)
T ss_pred             HHHHHHHHccCchhcc----CHHHHHHh
Confidence            9999999999999999    58888875

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.90  E-value=2e-23  Score=187.52  Aligned_cols=147  Identities=19%  Similarity=0.180  Sum_probs=112.5

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh----------------------hhHHHHHHHHHHHHHHhh
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH----------------------AKHEAERRARWEIRVLSR   79 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~----------------------~~~~~~~~~~~Ei~il~~   79 (412)
                      +.+.||+|+||.||+|.+. ++    +.||||+++.....                      ..........+|.+.+.+
T Consensus         1 ~~~~ig~G~~~~Vy~a~~~-~g----~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   75 (190)
T cd05145           1 INGCISTGKEANVYHARTG-DG----EELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKR   75 (190)
T ss_pred             CCceeecCCCcEEEEEEcC-CC----CEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999875 33    45999999865311                      001112334679999999


Q ss_pred             cCCCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEE
Q 042539           80 LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILI  158 (412)
Q Consensus        80 l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl  158 (412)
                      +.|++|.....+....  .|+||||+.|+++......  ...+++..+..++.|++.+|.++|+ +||+||||||+|||+
T Consensus        76 l~~~~i~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~--~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll  151 (190)
T cd05145          76 LYEAGVPVPEPILLKK--NVLVMEFIGDDGSPAPRLK--DVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILY  151 (190)
T ss_pred             HHhCCCCCceEEEecC--CEEEEEEecCCCchhhhhh--hccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEE
Confidence            9999875544443332  4899999998865433222  2347889999999999999999999 999999999999999


Q ss_pred             ccCCCEEEccccccchhhch
Q 042539          159 RQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~~~  178 (412)
                      + +|.++|+|||+|+.....
T Consensus       152 ~-~~~~~liDFG~a~~~~~~  170 (190)
T cd05145         152 H-DGKPYIIDVSQAVELDHP  170 (190)
T ss_pred             E-CCCEEEEEcccceecCCC
Confidence            8 899999999999876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.90  E-value=2.5e-23  Score=186.06  Aligned_cols=202  Identities=20%  Similarity=0.237  Sum_probs=141.0

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeEE
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~~   99 (412)
                      .+...|++|+||+|+++..      .+..++.+.+..............+.+|+++|++|. |++|++++++    +..|
T Consensus         5 ~~~~~l~~~~f~~v~~~~~------~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~   74 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG------GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRH   74 (218)
T ss_pred             ccceeecCCCcceEEEeec------CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEE
Confidence            3568899999999997654      223367666655443223334456888999999996 5889999986    4469


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeC-CCCceEEccCCCEEEccccccchhhch
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL-KPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDl-Kp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      ++|+|+.|.+|.....        .. ...++.|++.+|+++|++||+|||| ||+|||++.+|.++|+|||+|......
T Consensus        75 lvmeyI~G~~L~~~~~--------~~-~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~  145 (218)
T PRK12274         75 LDRSYLAGAAMYQRPP--------RG-DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPR  145 (218)
T ss_pred             EEEeeecCccHHhhhh--------hh-hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCc
Confidence            9999999998853211        11 1357889999999999999999999 799999999999999999999754322


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                      .....                      .+..      ++                     ... -.......++.|+.|+
T Consensus       146 ~~~~r----------------------~L~~------rD---------------------l~~-llk~~~~y~~~~l~~~  175 (218)
T PRK12274        146 ARWMR----------------------LLAR------ED---------------------LRH-LLKHKRMYCPAALTPV  175 (218)
T ss_pred             chHHH----------------------HHHH------HH---------------------HHH-HHHHHHhcCCCCCCHH
Confidence            11000                      0000      00                     000 0001123577888888


Q ss_pred             eecCC-CCC-chhhHHHHHHHHHHHhhCCCCCCCC
Q 042539          259 VVRGD-GHE-FAVDWWALGILTYEMLYGTTPFRGK  291 (412)
Q Consensus       259 ~l~~~-~~~-~~~DiwSlGvil~ell~g~~Pf~~~  291 (412)
                      ...-. ..+ ...+|++.|+-+|.++|+..++-+.
T Consensus       176 ~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        176 ERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             HHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence            65433 223 5789999999999999999887543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.90  E-value=5.5e-24  Score=221.46  Aligned_cols=313  Identities=28%  Similarity=0.427  Sum_probs=236.9

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .....+++.+++.+-+|+++.++.++-...+..    .++|+..+...-..+ ..+..+++-.++-...+|.+++....|
T Consensus       799 yrsS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~----~~~~v~~~ap~i~~~-~~~s~r~~s~~~i~p~~P~v~~~~~s~  873 (1205)
T KOG0606|consen  799 YRSSPDGFEITKPSQSGSPSSSFPASPAGSGHT----RPSKVHGLAPKIRTN-DYESIRSKSNILITPRSPAVVRSFPSF  873 (1205)
T ss_pred             ccCCCccceecccccCCCCcccccCCccccccc----cchhhhccchhhccc-cccccCCccCccccCCCCceecccCCC
Confidence            567899999999999999999999877665533    677776554432221 123333455555556678888887777


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .....++||++|+.|++|...++...  ..+++-++.++..++.+++|||+..++|||++|.|+|+..+|+.++.|||..
T Consensus       874 ~~rsP~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~  951 (1205)
T KOG0606|consen  874 PCRSPLPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTL  951 (1205)
T ss_pred             CCCCCcchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccc
Confidence            77889999999999999988776654  5888999999999999999999999999999999999999999999999955


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccC--CCCCCccccc
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD--NGERSNSFVG  250 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g  250 (412)
                      ....--               .+..                   +..|.......+......+..+..  +.......+|
T Consensus       952 ~~vg~~---------------~p~~-------------------~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  997 (1205)
T KOG0606|consen  952 SKVGLI---------------PPTT-------------------DLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVG  997 (1205)
T ss_pred             cccccc---------------cCcC-------------------CcccccccCccccccccccccccccchhhccccccC
Confidence            433110               0000                   111222211111111111111111  2234557889


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCC----ChHHHHHHHHhhhhCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQ----RTALTDLIQRLLEKDP  326 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~----~~~~~dli~~~L~~dP  326 (412)
                      |+.|.+||.+.+......+|||++|++++|.++|.+||.....+..+++|......++..    +..+.+++.++|..+|
T Consensus       998 t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~ 1077 (1205)
T KOG0606|consen  998 TPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEP 1077 (1205)
T ss_pred             CCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCc
Confidence            999999999999999999999999999999999999999999999999999988777654    5789999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                      .+|.+.. .+.+.+.|+||++++|+.+... .-.|+|..++.
T Consensus      1078 ~qr~~a~-~~~e~k~~~~~~~~~~~~l~~q-~~~~~p~~~s~ 1117 (1205)
T KOG0606|consen 1078 TQRLGAK-GAAEVKGHPFFQDVDWENLALQ-KAEFVPQPEST 1117 (1205)
T ss_pred             hhccCcc-cccccccCCccCCCCccccccc-cCccCCCCCCC
Confidence            9999743 4569999999999999988663 34566665543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.89  E-value=2.4e-23  Score=195.36  Aligned_cols=236  Identities=25%  Similarity=0.278  Sum_probs=144.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC----------Ccccee
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH----------PFLPKL   88 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h----------pnIv~l   88 (412)
                      .+...+.||.|+++.||.|.+..++.    .+|+|+...... ......+.+.+|.-....+.+          -.++-.
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~----~~avkvf~~~~~-~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P   87 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGE----EFAVKVFLLPAD-ASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVP   87 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTE----EEEEEEEEESST-THTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---
T ss_pred             EEEEccccccCCceEEEEEEEccCCc----eEEEEEEecccc-cchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEee
Confidence            56788999999999999999988554    499999865542 222334445545433333222          122222


Q ss_pred             eeeE---------EeCC--------eEEEEeeccCCCCchhHHH---hhCCCC-CCHHHH-HHHHHHHHHHHHHHHHcCc
Q 042539           89 LGSL---------ETDE--------FLAWAVPYCPGGDLNVLRY---KQNDRV-FSPSVI-RFYLSEIICAIEHLHNMGI  146 (412)
Q Consensus        89 ~~~~---------~~~~--------~~~lv~e~~~gg~L~~~~~---~~~~~~-l~~~~~-~~~~~qi~~aL~yLH~~~i  146 (412)
                      ++..         ....        +.+++|+-+ .+||..++.   ...... -....| ..+..|++..+++||+.|+
T Consensus        88 ~d~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~Gl  166 (288)
T PF14531_consen   88 LDLLRIPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGL  166 (288)
T ss_dssp             SEEEEETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             eEEEEEcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcce
Confidence            2222         2111        347788877 456765533   232211 112334 3445999999999999999


Q ss_pred             eeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccc
Q 042539          147 AYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKS  226 (412)
Q Consensus       147 iHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (412)
                      +|+||||+|++++.+|.++|+||+........                                                
T Consensus       167 VHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~------------------------------------------------  198 (288)
T PF14531_consen  167 VHGDIKPENFLLDQDGGVFLGDFSSLVRAGTR------------------------------------------------  198 (288)
T ss_dssp             EEST-SGGGEEE-TTS-EEE--GGGEEETTEE------------------------------------------------
T ss_pred             EecccceeeEEEcCCCCEEEcChHHHeecCce------------------------------------------------
Confidence            99999999999999999999999877543211                                                


Q ss_pred             cCCCCccccccccCCCCCCcccccCCCCccceeecCC--------CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHH
Q 042539          227 ARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD--------GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR  298 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~--------~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~  298 (412)
                                        ......+..|.+||.....        .++.+.|.|+||+++|.|.+|..||..........
T Consensus       199 ------------------~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~  260 (288)
T PF14531_consen  199 ------------------YRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPE  260 (288)
T ss_dssp             ------------------EEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSG
T ss_pred             ------------------eeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCcccccc
Confidence                              1111244679999976432        46889999999999999999999998754322111


Q ss_pred             HHhcCCCCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          299 NVLMKTPEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       299 ~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .   ......+.+..+++||..||++||.+|
T Consensus       261 ~---~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  261 W---DFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             G---GGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             c---cchhcCCcCHHHHHHHHHHccCCcccC
Confidence            1   111122667889999999999999988

>PRK10345 hypothetical protein; Provisional

Probab=99.88  E-value=5.7e-22  Score=179.90  Aligned_cols=139  Identities=18%  Similarity=0.232  Sum_probs=106.2

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-----CCCccceeeeeEEeC
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-----SHPFLPKLLGSLETD   95 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-----~hpnIv~l~~~~~~~   95 (412)
                      .-.+.||+|+||.||.  +...    .. .+||++.....    .....+.+|+++++.+     +||||+++|++++++
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~----~~-k~IKv~~~~~~----~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~   73 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPED----AQ-RCIKIVYHRGD----GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETD   73 (210)
T ss_pred             CCcceecCCCceEEEE--CCCC----cC-eEEEEEecccc----chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeC
Confidence            3457899999999995  3332    22 37998865432    1235578899999999     579999999999987


Q ss_pred             C---eEE-EEeec--cCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHH-HHHHHcCceeeeCCCCceEEccC----CCE
Q 042539           96 E---FLA-WAVPY--CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI-EHLHNMGIAYRDLKPENILIRQS----GHV  164 (412)
Q Consensus        96 ~---~~~-lv~e~--~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL-~yLH~~~iiHrDlKp~NiLl~~~----g~v  164 (412)
                      .   .++ +||||  +.+|+|.+++...   .+++.  ..++.|++.++ +|||+++|+||||||+|||++..    +.+
T Consensus        74 ~g~g~v~~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~  148 (210)
T PRK10345         74 CGTGYVYDVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIP  148 (210)
T ss_pred             CCCeEEEEEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcE
Confidence            4   434 78999  5579999888542   36666  35678888888 99999999999999999999753    379


Q ss_pred             EEccccccchh
Q 042539          165 TLTDFDLSRNL  175 (412)
Q Consensus       165 kL~DFGla~~~  175 (412)
                      +|+||+.++.+
T Consensus       149 ~LiDg~G~~~~  159 (210)
T PRK10345        149 VVCDNIGESTF  159 (210)
T ss_pred             EEEECCCCcce
Confidence            99995545444

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=1.5e-21  Score=184.57  Aligned_cols=269  Identities=19%  Similarity=0.292  Sum_probs=174.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCC-------------------------------CCCceEEeeecchhh
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPT-------------------------------ARCPFALKVVDKSTL   60 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~-------------------------------~~~~vAiK~i~~~~~   60 (412)
                      ...+++++|+|...||+|....||.|+....+..                               ..-+.|||.+=.-..
T Consensus       151 dskFtiddyeiG~~igkGC~AaVY~A~~~~dg~~le~~~~t~~~pgf~p~ts~p~e~~q~~~p~~~aFPLAiKmMfN~~~  230 (598)
T KOG4158|consen  151 DSKFTIDDYEIGEFIGKGCNAAVYSARLANDGSDLESSGNTHYGPGFNPVTSIPAEIPQVSKPAQKAFPLAIKMMFNFEH  230 (598)
T ss_pred             hcccchhhhcccchhhccchhhhhhhhcCCCcccccccCCCCcCCCcCCCcCCcccCCcccCccccccchHHHHhccccc
Confidence            4578999999999999999999999875431100                               011356675522111


Q ss_pred             -hhhHHHHHHHHHHH------------H--HHh-------h-cCCCccceeeeeEEe-----------------------
Q 042539           61 -HAKHEAERRARWEI------------R--VLS-------R-LSHPFLPKLLGSLET-----------------------   94 (412)
Q Consensus        61 -~~~~~~~~~~~~Ei------------~--il~-------~-l~hpnIv~l~~~~~~-----------------------   94 (412)
                       .......+...+|.            .  ..+       + -+|||||++..+|.+                       
T Consensus       231 ~s~~~~iL~sM~~ElvPa~~~a~~~e~~~~t~R~l~nqtvhLa~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~  310 (598)
T KOG4158|consen  231 DSGDAHILKSMGNELVPAPNAAKLLEGQMGTFRPLPNQTVHLAKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPS  310 (598)
T ss_pred             CCchHHHHHHhhhhccCcchhhhhcccccceeeeCCCCCcccCCCCCEEeehhhhhhhhccCCchhhhCcccccceeccc
Confidence             11111122222221            0  011       1 249999999987743                       


Q ss_pred             ----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc--C--CCEEE
Q 042539           95 ----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ--S--GHVTL  166 (412)
Q Consensus        95 ----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~--~--g~vkL  166 (412)
                          +..+|+||.-+. -+|..++-.+.   .+....+.++.|++.|+.|||++||.|||+|.+|||+.-  +  -.+.|
T Consensus       311 g~g~~~tlylvMkrY~-~tLr~yl~~~~---~s~r~~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVv  386 (598)
T KOG4158|consen  311 GAGEPKTLYLVMKRYR-QTLREYLWTRH---RSYRTGRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVV  386 (598)
T ss_pred             ccCCCceEEEehhcch-hhHHHHHhcCC---CchHHHHHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEE
Confidence                235899998774 46777765443   678899999999999999999999999999999999843  3  35899


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||++--- ++...             +.                                           .-....-
T Consensus       387 aDFGCcLAd-~~hGl-------------ql-------------------------------------------py~S~~V  409 (598)
T KOG4158|consen  387 ADFGCCLAD-DNHGL-------------QL-------------------------------------------PYESDEV  409 (598)
T ss_pred             cccceeeec-ccccc-------------cc-------------------------------------------ccccccc
Confidence            999987321 11000             00                                           0000011


Q ss_pred             ccccCCCCccceeecCCCC------CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh--cCCCCCC-CCChHHHHH
Q 042539          247 SFVGTEEYVSPEVVRGDGH------EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL--MKTPEFV-GQRTALTDL  317 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~------~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~--~~~~~~~-~~~~~~~dl  317 (412)
                      ..-|.-.-||||+....+-      -.++|.|+.|.+.||+++..-||.+......-.+-.  ...|..+ .+++.++++
T Consensus       410 d~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLPalp~~vpp~~rql  489 (598)
T KOG4158|consen  410 DLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLPALPSRVPPVARQL  489 (598)
T ss_pred             cCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCCCCcccCChHHHHH
Confidence            2246667899999865321      248999999999999999999998743322111111  1123332 457889999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhcC
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +..+|+.||++|++- +.+..+++-
T Consensus       490 V~~lL~r~pskRvsp-~iAANvl~L  513 (598)
T KOG4158|consen  490 VFDLLKRDPSKRVSP-NIAANVLNL  513 (598)
T ss_pred             HHHHhcCCccccCCc-cHHHhHHHH
Confidence            999999999999973 234555543

>smart00090 RIO RIO-like kinase

Probab=99.85  E-value=3.2e-21  Score=178.80  Aligned_cols=146  Identities=22%  Similarity=0.198  Sum_probs=111.6

Q ss_pred             CceeeeeeeccCceEEEEEE-EcCCCCCCCCceEEeeecchhhh--------------------hhHHHHHHHHHHHHHH
Q 042539           19 NLKALKILGKGAMGTVFLVH-DRAADPTARCPFALKVVDKSTLH--------------------AKHEAERRARWEIRVL   77 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~-~~~~~~~~~~~vAiK~i~~~~~~--------------------~~~~~~~~~~~Ei~il   77 (412)
                      .|++.+.||+|+||.||+|. +..+    ++.||||+++.....                    ........+.+|++++
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~----g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L  104 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGS----GKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNL  104 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCC----CcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999998 4343    445999999754321                    0111234567899999


Q ss_pred             hhcCCC--ccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC-ceeeeCCCC
Q 042539           78 SRLSHP--FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG-IAYRDLKPE  154 (412)
Q Consensus        78 ~~l~hp--nIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~-iiHrDlKp~  154 (412)
                      +++.+.  .+.++++   .. ..++||||+.|++|......  ...+...++..++.|++.+|.+||++| |+||||||+
T Consensus       105 ~~L~~~~i~~p~~~~---~~-~~~lV~E~~~g~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~  178 (237)
T smart00090      105 QRLYEAGVPVPKPIA---WR-RNVLVMEFIGGDGLPAPRLK--DVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEY  178 (237)
T ss_pred             HHHHhcCCCCCeeeE---ec-CceEEEEEecCCcccccccc--cCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChh
Confidence            999753  2344443   22 35899999999888654322  234667778899999999999999999 999999999


Q ss_pred             ceEEccCCCEEEccccccchh
Q 042539          155 NILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       155 NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ||+++ ++.++|+|||.|...
T Consensus       179 NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      179 NILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             hEEEE-CCCEEEEEChhhhcc
Confidence            99999 889999999999764

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.4e-21  Score=205.29  Aligned_cols=207  Identities=24%  Similarity=0.389  Sum_probs=164.5

Q ss_pred             CCCCCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC---
Q 042539            5 PPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---   81 (412)
Q Consensus         5 ~~~~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~---   81 (412)
                      |..++.+..++.-+.|.|-+.||+|+||+||.|....     ++.||+|+-+......       ++-=.+++.+|+   
T Consensus       685 ~~l~~~~~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~-----~~~~alK~e~P~~~WE-------fYI~~q~~~RLk~~~  752 (974)
T KOG1166|consen  685 PKLNPNTEFEVGGEKFCISKEIGEGSYGSVYVATHSN-----GKLVALKVEKPPNPWE-------FYICLQVMERLKPQM  752 (974)
T ss_pred             cccCccceeeecceeEEEEeeeccccceEEEEeecCC-----CcEEEEEeecCCCcee-------eeehHHHHHhhchhh
Confidence            3444566678888999999999999999999987754     4459999976544211       111123334443   


Q ss_pred             CCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           82 HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        82 hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      -+.|+.+..++.-.+.-+||++|.+-|+|.+++.  ..+.+++..+.+++.|++..|+.||..+|||+||||+|+||...
T Consensus       753 ~~~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~~N--~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~  830 (974)
T KOG1166|consen  753 LPSIMHISSAHVFQNASVLVSEYSPYGTLLDLIN--TNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRRE  830 (974)
T ss_pred             hcchHHHHHHHccCCcceeeeeccccccHHHhhc--cCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecc
Confidence            3567778888888888899999999999988876  44569999999999999999999999999999999999999532


Q ss_pred             -------CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccc
Q 042539          162 -------GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSR  234 (412)
Q Consensus       162 -------g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (412)
                             -.++|+|||.|-.+.                                                          
T Consensus       831 ~~~~~~~~~l~lIDfG~siDm~----------------------------------------------------------  852 (974)
T KOG1166|consen  831 ICADSDSKGLYLIDFGRSIDMK----------------------------------------------------------  852 (974)
T ss_pred             cCCCCcccceEEEecccceeee----------------------------------------------------------
Confidence                   348999999886542                                                          


Q ss_pred             cccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCC
Q 042539          235 RQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTT  286 (412)
Q Consensus       235 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~  286 (412)
                         -|.++..-...++|-.+-++|...|.+++..+|.|-|+-+++.||.|+.
T Consensus       853 ---lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  853 ---LFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             ---EcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence               1234445556788999999999999999999999999999999999864

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=2.5e-21  Score=174.86  Aligned_cols=241  Identities=20%  Similarity=0.282  Sum_probs=191.8

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+.+.++.++-+|.+...|..|++++.+.+      ++.|+++-.....  ...+.+..|.-.|+.+.||||+.+++.+.
T Consensus       186 gid~~~lnl~tkl~e~hsgelwrgrwqgnd------ivakil~vr~~t~--risrdfneefp~lrifshpnilpvlgacn  257 (448)
T KOG0195|consen  186 GIDVSSLNLITKLAESHSGELWRGRWQGND------IVAKILNVREVTA--RISRDFNEEFPALRIFSHPNILPVLGACN  257 (448)
T ss_pred             CcchhhhhhhhhhccCCCcccccccccCcc------hhhhhhhhhhcch--hhcchhhhhCcceeeecCCchhhhhhhcc
Confidence            466677788889999999999999997655      6778776554322  23445666888899999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccCCCEEEc--cc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSGHVTLT--DF  169 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~g~vkL~--DF  169 (412)
                      ...++.++..|++-|+|+++++...+-..+..++..++..++.|+.|||+..  |.---|....++||++-+.+|.  |-
T Consensus       258 sppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~  337 (448)
T KOG0195|consen  258 SPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADT  337 (448)
T ss_pred             CCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccc
Confidence            9999999999999999999999887777888999999999999999999985  3334678888999888665553  32


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      -++..                                                                  ..    ...
T Consensus       338 kfsfq------------------------------------------------------------------e~----gr~  347 (448)
T KOG0195|consen  338 KFSFQ------------------------------------------------------------------EV----GRA  347 (448)
T ss_pred             eeeee------------------------------------------------------------------cc----ccc
Confidence            22211                                                                  00    112


Q ss_pred             cCCCCccceeecCCCC---CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---CCCCCCChHHHHHHHHhhh
Q 042539          250 GTEEYVSPEVVRGDGH---EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~---~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~dli~~~L~  323 (412)
                      -.|.||+||.++..+.   -.++|+|||++++|||.|...||...+..+.-.+|....   -..++++..+..|++-|++
T Consensus       348 y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv~ippgis~hm~klm~icmn  427 (448)
T KOG0195|consen  348 YSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMN  427 (448)
T ss_pred             cCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhc
Confidence            3688999999988764   368999999999999999999999988888766665432   2346788899999999999


Q ss_pred             hCCCccCCC
Q 042539          324 KDPVKRLGY  332 (412)
Q Consensus       324 ~dP~~R~~~  332 (412)
                      .||.+||.+
T Consensus       428 edpgkrpkf  436 (448)
T KOG0195|consen  428 EDPGKRPKF  436 (448)
T ss_pred             CCCCcCCCc
Confidence            999999964

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.3e-22  Score=207.31  Aligned_cols=263  Identities=22%  Similarity=0.345  Sum_probs=206.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      ....|.+.+.||+|+|+.|-++.....   ....+|+|.+....  .......++..|..+-+.+. |.|++++++....
T Consensus        18 ~~~~~~~~~~ig~gs~~~~~~~~~~~~---~~~~~a~~~~s~~~--~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~   92 (601)
T KOG0590|consen   18 PNSQYKLSRSIGKGSFSSSALASNSRD---PESSSATKPISIPP--KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSS   92 (601)
T ss_pred             ccccccccccccccccchhhhhhhcCC---CcceeeccCCCCCC--CccchhhhcCccccccccccccccccccCCccCC
Confidence            577899999999999999998765332   33447777765443  22334555566888888887 9999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH-HcCceeeeCCCCceEEccCC-CEEEcccccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH-NMGIAYRDLKPENILIRQSG-HVTLTDFDLS  172 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH-~~~iiHrDlKp~NiLl~~~g-~vkL~DFGla  172 (412)
                      .+..++.+++..|+++..-+........+...+..++.|+..++.|+| ..++.||||||+|.+++.++ .++++|||+|
T Consensus        93 ~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~A  172 (601)
T KOG0590|consen   93 PRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLA  172 (601)
T ss_pred             CcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhh
Confidence            999999999999999977662222214788899999999999999999 99999999999999999999 9999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc-C
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG-T  251 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-t  251 (412)
                      ..+....                                                            .........+| +
T Consensus       173 t~~~~~~------------------------------------------------------------g~~~~~~~~~g~s  192 (601)
T KOG0590|consen  173 TAYRNKN------------------------------------------------------------GAERSLKDRCGSS  192 (601)
T ss_pred             ccccccC------------------------------------------------------------CcceeeecccCCC
Confidence            7664310                                                            01112234567 9


Q ss_pred             CCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHH-HHhc-----CCCCCCCCChHHHHHHHHhhhh
Q 042539          252 EEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFR-NVLM-----KTPEFVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       252 ~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~-~i~~-----~~~~~~~~~~~~~dli~~~L~~  324 (412)
                      +.|+|||...+..| ....|+||.|+++..+++|..|+.......... ....     ....+...+....+++.++|..
T Consensus       193 ~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~  272 (601)
T KOG0590|consen  193 PPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKE  272 (601)
T ss_pred             CCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccC
Confidence            99999999998655 788999999999999999999997755443221 1111     1234456678899999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCCCC
Q 042539          325 DPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +|..|.    +.+++..++|+..
T Consensus       273 ~~~~r~----s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  273 NPSNRL----SIEELKLDNWLSS  291 (601)
T ss_pred             Cchhcc----ccccccccccccc
Confidence            999999    6899999999987

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=7.9e-20  Score=166.49  Aligned_cols=140  Identities=21%  Similarity=0.223  Sum_probs=113.4

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh----hHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA----KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      ++.||+|++|.||++++.  +    ..+++|+........    ......++.+|+.++..+.|++|+....++.+.+..
T Consensus         1 ~~~l~~G~~~~vy~~~~~--~----~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~   74 (211)
T PRK14879          1 MKLIKRGAEAEIYLGDFL--G----IKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENF   74 (211)
T ss_pred             CcccccCceEEEEEEeeC--C----CceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCC
Confidence            468999999999999872  2    238999865432211    111234677899999999999988877777777889


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +++|||++|++|..++...     .. ....++.+++.+|.++|+.|++|||++|.|||++ ++.++|+|||+++..
T Consensus        75 ~lv~e~~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         75 IIVMEYIEGEPLKDLINSN-----GM-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             EEEEEEeCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            9999999999998876532     12 7788999999999999999999999999999999 889999999998753

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.81  E-value=2.6e-19  Score=161.61  Aligned_cols=134  Identities=24%  Similarity=0.251  Sum_probs=104.7

Q ss_pred             eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh----hHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEE
Q 042539           25 ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA----KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAW  100 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~l  100 (412)
                      .||+|+||.||++.+.+      ..+++|+........    ......++.+|++++..+.|+++....-++...+..++
T Consensus         1 ~ig~G~~~~vy~~~~~~------~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~l   74 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLG------LKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTI   74 (199)
T ss_pred             CCCCCceEEEEEeecCC------ccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE
Confidence            48999999999998432      338999865432211    11223567789999999998876555555556677899


Q ss_pred             EeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          101 AVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ||||++|++|..++....   .      .++.|++.+|.+||+.|++|||++|+||+++ ++.++++|||+++.
T Consensus        75 v~e~~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        75 VMEYIEGKPLKDVIEEGN---D------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EEEEECCccHHHHHhhcH---H------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            999999999977654311   1      7889999999999999999999999999999 89999999998864

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.80  E-value=3.1e-19  Score=184.93  Aligned_cols=140  Identities=21%  Similarity=0.188  Sum_probs=111.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh----hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH----AKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~----~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      .|...+.||+|+||+||++.+....      +++|+.......    .......++.+|+++++.++|++|+..+.+..+
T Consensus       334 ~~~~~~~iG~G~~g~Vy~~~~~~~~------~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~  407 (535)
T PRK09605        334 RKIPDHLIGKGAEADIKKGEYLGRD------AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD  407 (535)
T ss_pred             ccCccceeccCCcEEEEEEeecCcc------ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe
Confidence            3456889999999999998775432      444433221111    111234567889999999999999988877777


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ....++||||++|++|..++.          ....++.|++.+|.+||+.|++||||||+|||+ .++.++|+|||+++.
T Consensus       408 ~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        408 PEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            778899999999999987654          346789999999999999999999999999999 678999999999976


Q ss_pred             h
Q 042539          175 L  175 (412)
Q Consensus       175 ~  175 (412)
                      .
T Consensus       477 ~  477 (535)
T PRK09605        477 S  477 (535)
T ss_pred             C
Confidence            4

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.80  E-value=3.3e-19  Score=161.09  Aligned_cols=140  Identities=23%  Similarity=0.186  Sum_probs=107.2

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh------------------HHHHHHHHHHHHHHhhcC
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK------------------HEAERRARWEIRVLSRLS   81 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~------------------~~~~~~~~~Ei~il~~l~   81 (412)
                      |.+.+.||+|+||.||++...     +++.||||++........                  ........+|+.++..+.
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   91 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDP-----DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALY   91 (198)
T ss_pred             hhcCCccccCcceEEEEEEcC-----CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHH
Confidence            788899999999999998764     234599999865431000                  011223567899999998


Q ss_pred             CC--ccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc
Q 042539           82 HP--FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR  159 (412)
Q Consensus        82 hp--nIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~  159 (412)
                      |.  .++..++    ....++||||+.|++|..+..        ...+..++.+++.++.++|+.||+||||||+||+++
T Consensus        92 ~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~--------~~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~  159 (198)
T cd05144          92 EEGFPVPKPID----WNRHAVVMEYIDGVELYRVRV--------LEDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVD  159 (198)
T ss_pred             HcCCCCCceee----cCCceEEEEEeCCcchhhccc--------cccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEc
Confidence            76  4444443    234589999999999865421        134567889999999999999999999999999999


Q ss_pred             cCCCEEEccccccchhh
Q 042539          160 QSGHVTLTDFDLSRNLV  176 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~~  176 (412)
                      .++.++|+|||++....
T Consensus       160 ~~~~~~liDfg~~~~~~  176 (198)
T cd05144         160 DDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             CCCcEEEEECCccccCC
Confidence            99999999999997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=3.6e-20  Score=181.55  Aligned_cols=254  Identities=26%  Similarity=0.293  Sum_probs=167.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee-------e
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG-------S   91 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~-------~   91 (412)
                      .+.+.+..+.+++|.++..+-... ......++-|..+.+.+    .......+++-.+....|.+..-+.+       .
T Consensus       245 s~~~~k~~~~~~~~~~~~~q~~~~-~s~~E~~~s~~~~~d~~----~~~~~~~r~~~~l~~~~~~~~s~~~d~~~s~~~~  319 (516)
T KOG1033|consen  245 SSSISKSSERVSSGIVFEKQGKNN-SSLREWLKSKRADVDSL----CACKYTFRQLGVLVDSSHSNRSILEDLRPSLFES  319 (516)
T ss_pred             cccccccccccccCCchhhhhccc-chhhhhccchhhhccch----hhhhhhhhhhhheeccccCCcccccCCCCchhhh
Confidence            445566667777777664332211 00112233333222211    12233444666666665544443333       1


Q ss_pred             EEe-----CCeEEEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEE
Q 042539           92 LET-----DEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT  165 (412)
Q Consensus        92 ~~~-----~~~~~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vk  165 (412)
                      +..     ..++||.|++|.-.+|.+++..+. ...-+......++.|+..|++|   +|.+|||+||.||++..++.+|
T Consensus       320 ~~~~~v~~~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~k  396 (516)
T KOG1033|consen  320 SKRNKVGKKVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLK  396 (516)
T ss_pred             ccccccccccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccccchhhh
Confidence            111     236899999999999999886433 2235668889999999999999   9999999999999999999999


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |.|||+........                                                         +........
T Consensus       397 IgDFgl~ts~~~~~---------------------------------------------------------~~~~~~a~~  419 (516)
T KOG1033|consen  397 IGDFGLVTSQDKDE---------------------------------------------------------TVAPAAASH  419 (516)
T ss_pred             hhhhhheeecccCC---------------------------------------------------------cccchhhhh
Confidence            99999986543211                                                         000112233


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhh
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLL  322 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L  322 (412)
                      ..-+||..||+||++.+..|+.++||||||+||||+++ -...|.   ...++..+..+..+  +..-.+.-.+|+.+||
T Consensus       420 t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e---r~~t~~d~r~g~ip~~~~~d~p~e~~ll~~ll  496 (516)
T KOG1033|consen  420 TQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE---RIATLTDIRDGIIPPEFLQDYPEEYTLLQQLL  496 (516)
T ss_pred             hhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH---HHHhhhhhhcCCCChHHhhcCcHHHHHHHHhc
Confidence            45589999999999999999999999999999999997 333332   23444555444433  3333456779999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCC
Q 042539          323 EKDPVKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~f  344 (412)
                      ...|.+||    .+.+.--|.|
T Consensus       497 s~~p~~RP----~~~~~~~~~~  514 (516)
T KOG1033|consen  497 SPSPEERP----SAIEVALHEF  514 (516)
T ss_pred             CCCcccCc----hHHHHhhhhh
Confidence            99999999    3555555554

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.75  E-value=4.6e-18  Score=151.81  Aligned_cols=142  Identities=22%  Similarity=0.238  Sum_probs=100.0

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHH--------------------HHHHHHHHHHHhhcC
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA--------------------ERRARWEIRVLSRLS   81 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~--------------------~~~~~~Ei~il~~l~   81 (412)
                      +.+.||+|+||+||+|.+. .    ++.||||++...........                    ......|.+.+..+.
T Consensus         1 ~~~~lg~G~~g~Vy~a~~~-~----~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~   75 (187)
T cd05119           1 VGGPIGTGKEADVYLALDG-D----GEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLY   75 (187)
T ss_pred             CCcccccccceeEEEEECC-C----CCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHH
Confidence            3578999999999999875 2    34599999875432111111                    011234666777765


Q ss_pred             CC--ccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEE
Q 042539           82 HP--FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILI  158 (412)
Q Consensus        82 hp--nIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl  158 (412)
                      +.  .+.+.+++    ...++||||+.|+.+........   ....+++.++.+++.++.++|+ .||+||||||+||++
T Consensus        76 ~~~~~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili  148 (187)
T cd05119          76 EAGVPVPKPIDL----NRHVLVMEFIGGDGIPAPRLKDV---RLLEDPEELYDQILELMRKLYREAGLVHGDLSEYNILV  148 (187)
T ss_pred             HcCCCCCceEec----CCCEEEEEEeCCCCccChhhhhh---hhcccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEE
Confidence            43  24455443    23589999999965432111111   1116788999999999999999 999999999999999


Q ss_pred             ccCCCEEEccccccchhh
Q 042539          159 RQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~  176 (412)
                      + ++.++|+|||.+....
T Consensus       149 ~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         149 D-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             E-CCcEEEEECccccccc
Confidence            9 8999999999997653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.74  E-value=2.4e-17  Score=153.11  Aligned_cols=139  Identities=24%  Similarity=0.312  Sum_probs=103.9

Q ss_pred             eeee-ccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh---------hHHHHHHHHHHHHHHhhcCCCcc--ceeeee
Q 042539           24 KILG-KGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA---------KHEAERRARWEIRVLSRLSHPFL--PKLLGS   91 (412)
Q Consensus        24 ~~LG-~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~---------~~~~~~~~~~Ei~il~~l~hpnI--v~l~~~   91 (412)
                      ..|| .||.|+||.+...      +..++||.+.+..+-.         ......++.+|+.++..|.|++|  +..+++
T Consensus        37 ~~lg~~~g~gtv~~v~~~------~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~  110 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP------GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAA  110 (239)
T ss_pred             ceeecCCCCccEEEEEeC------CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEee
Confidence            4577 7888888888664      2238999886533211         11234567889999999998774  677776


Q ss_pred             EEeCC-e---EEEEeeccCC-CCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           92 LETDE-F---LAWAVPYCPG-GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        92 ~~~~~-~---~~lv~e~~~g-g~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ..... .   .++|||+++| .+|..++..   ..+++..    +.|++.+|.+||++||+||||||+|||++.++.++|
T Consensus       111 ~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~~----~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~L  183 (239)
T PRK01723        111 RVVRHGLFYRADILIERIEGARDLVALLQE---APLSEEQ----WQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWL  183 (239)
T ss_pred             eeeecCcceeeeEEEEecCCCCCHHHHHhc---CCCCHHH----HHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEE
Confidence            54332 2   3599999998 688766543   2355543    578999999999999999999999999999999999


Q ss_pred             ccccccchh
Q 042539          167 TDFDLSRNL  175 (412)
Q Consensus       167 ~DFGla~~~  175 (412)
                      +|||.+...
T Consensus       184 IDfg~~~~~  192 (239)
T PRK01723        184 IDFDRGELR  192 (239)
T ss_pred             EECCCcccC
Confidence            999998764

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.72  E-value=5.1e-17  Score=138.46  Aligned_cols=133  Identities=21%  Similarity=0.319  Sum_probs=111.4

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC--CccceeeeeEEeCCeEE
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH--PFLPKLLGSLETDEFLA   99 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h--pnIv~l~~~~~~~~~~~   99 (412)
                      +++.||+|+++.||++....      ..+++|+......      ...+.+|+.+++.+.|  .++++++.++...+..+
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~------~~~~iK~~~~~~~------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~   69 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD------EDYVLKINPSREK------GADREREVAILQLLARKGLPVPKVLASGESDGWSY   69 (155)
T ss_pred             cceecccccccceEEEEecC------CeEEEEecCCCCc------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccE
Confidence            56889999999999998754      2389999865432      3456679999999976  58999999998888999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc---CceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM---GIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~---~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ++|||+.|+.+..+         +......++.+++.+|.++|..   +++|+|++|+||+++..+.++++|||.++..
T Consensus        70 ~v~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          70 LLMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             EEEEecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            99999999887543         4456677889999999999985   7999999999999999899999999999764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.67  E-value=2.8e-16  Score=156.79  Aligned_cols=194  Identities=26%  Similarity=0.323  Sum_probs=148.6

Q ss_pred             HhhcCCCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCc-eeeeCCCCc
Q 042539           77 LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGI-AYRDLKPEN  155 (412)
Q Consensus        77 l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~i-iHrDlKp~N  155 (412)
                      |+.+.|.|+.++++...++..++.|.+||.-|+|.+.+.... -.++.--...+++.|+.||.|||.--| .|+.++..|
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~n   79 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSN   79 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHHHHHHhcCcceeeeeecccc
Confidence            467889999999999999999999999999999998887633 347777788899999999999998755 999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ++++....+||+|||+........+                                                       
T Consensus        80 Clvd~~w~lklt~~Gl~~~~~~~~~-------------------------------------------------------  104 (484)
T KOG1023|consen   80 CLVDSRWVLKLTDFGLNSLLEETAE-------------------------------------------------------  104 (484)
T ss_pred             ceeeeeEEEEechhhhccccccccc-------------------------------------------------------
Confidence            9999999999999998865421000                                                       


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCC-------CCchhhHHHHHHHHHHHhhCCCCCCCCC----HHHHHHHHhc-C
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDG-------HEFAVDWWALGILTYEMLYGTTPFRGKN----RKETFRNVLM-K  303 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~-------~~~~~DiwSlGvil~ell~g~~Pf~~~~----~~~~~~~i~~-~  303 (412)
                            ........-...|.|||.+.+..       .+.+.|+||+|++++|+++..-||....    ..+....+.. +
T Consensus       105 ------~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~  178 (484)
T KOG1023|consen  105 ------PEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGG  178 (484)
T ss_pred             ------ccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcC
Confidence                  00000111234699999998741       3677999999999999999999997632    2234444433 1


Q ss_pred             C-CCCC------CCChHHHHHHHHhhhhCCCccCCC
Q 042539          304 T-PEFV------GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       304 ~-~~~~------~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      . +..+      ...+++..+++.||..+|.+||++
T Consensus       179 ~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~  214 (484)
T KOG1023|consen  179 SNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSI  214 (484)
T ss_pred             CCCcCcchhhhhhcchHHHHHHHHhcccChhhCccH
Confidence            1 1111      233578899999999999999964

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=1.7e-16  Score=158.51  Aligned_cols=267  Identities=21%  Similarity=0.231  Sum_probs=196.9

Q ss_pred             CCCCCccCceeeeeeec--cCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCcccee
Q 042539           12 TPSLDLDNLKALKILGK--GAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKL   88 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~--G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l   88 (412)
                      -..+.-..+.+.+.+|.  |.+|.||.++...  ......+|+|.=+...  .......+-++|+...+.++ |+|.++.
T Consensus       108 ~~s~~~~~~~~~~~~g~~~g~~~s~~~~~~~~--~~s~~~~a~k~s~~p~--s~p~~~~~k~~~~~s~~~i~~~~~~v~~  183 (524)
T KOG0601|consen  108 FDSFFDQRFPISSRTGSLPGSKGSVFKSRCTN--SESPHKFAVKKSKIPF--SPPLDSKRKLREFLSHHKIDSHENPVRD  183 (524)
T ss_pred             ccchhhhhcccccccccCCCCCceeecccCCc--ccCCcccccccccCCC--CCccccccccchhhcccccCcccccccc
Confidence            34566678889999999  9999999887622  2344558998732211  11122334445777888886 9999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHH----HHHHHHHcCceeeeCCCCceEEccC-CC
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC----AIEHLHNMGIAYRDLKPENILIRQS-GH  163 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~----aL~yLH~~~iiHrDlKp~NiLl~~~-g~  163 (412)
                      +..++..+.+|+-+|+| |.+|..+.... ...+++..++.++.+...    ||.++|+.+|+|-|+||+||++..+ ..
T Consensus       184 ~~~~e~~~~lfiqtE~~-~~sl~~~~~~~-~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s  261 (524)
T KOG0601|consen  184 SPAWEGSGILFIQTELC-GESLQSYCHTP-CNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTS  261 (524)
T ss_pred             CcccccCCcceeeeccc-cchhHHhhhcc-cccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccce
Confidence            99999999999999999 56776665543 335889999999999999    9999999999999999999999999 78


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      .+++|||+...+....-..                                                          .-.
T Consensus       262 ~~~~df~~v~~i~~~~~~~----------------------------------------------------------~~~  283 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSS----------------------------------------------------------VFK  283 (524)
T ss_pred             eecCCcceeEEccCCcccc----------------------------------------------------------cee
Confidence            9999999998774332100                                                          000


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHhcCCCCCCCCChHHHHHHHHh
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK--NRKETFRNVLMKTPEFVGQRTALTDLIQRL  321 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~dli~~~  321 (412)
                      ..-...|...|++||.+++. ++...|++|||.++.+..+|..++...  +....+++...........+.++...+..|
T Consensus       284 ~~~r~~~~~~Y~~ke~~~~l-~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~  362 (524)
T KOG0601|consen  284 VSKRPEGDCIYAAKELLNGL-ATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQM  362 (524)
T ss_pred             eeecCCCCceEeChhhhccc-cchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcCcchhhhhHHHHh
Confidence            00111466689999999875 678999999999999999887766543  333334443322222234456677799999


Q ss_pred             hhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          322 LEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +..+|..|+    +++.+++|.+...
T Consensus       363 ~d~~~~~~~----~~q~~~~l~~i~s  384 (524)
T KOG0601|consen  363 LDEDPRLRL----TAQILTALNVIHS  384 (524)
T ss_pred             cCcchhhhh----HHHHHhccccccc
Confidence            999999998    6889999998874

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.58  E-value=1.6e-15  Score=154.73  Aligned_cols=148  Identities=15%  Similarity=0.218  Sum_probs=98.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh------------------------------hHHH
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA------------------------------KHEA   66 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~------------------------------~~~~   66 (412)
                      +.+|.. +.||+|++|.||.|+.+.++    +.||||+++......                              -.+.
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G----~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~  193 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNG----REVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEF  193 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCC----CEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHH
Confidence            345666 89999999999999987644    449999997542110                              0122


Q ss_pred             HHHHHHHHHHHhhcCCCccceeeeeEEeC-------------CeEEEEeeccCCCCchhHHHhhCCC----CCCHHHHHH
Q 042539           67 ERRARWEIRVLSRLSHPFLPKLLGSLETD-------------EFLAWAVPYCPGGDLNVLRYKQNDR----VFSPSVIRF  129 (412)
Q Consensus        67 ~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-------------~~~~lv~e~~~gg~L~~~~~~~~~~----~l~~~~~~~  129 (412)
                      .+.+.+|++.....  .|+.++...|.+.             ..-+||||||.|+.+.++......+    .+.+..+..
T Consensus       194 ~~~l~~ElD~~~Ea--~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~  271 (537)
T PRK04750        194 EKTLHDELDLMREA--ANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEV  271 (537)
T ss_pred             HHHHHHhhCHHHHH--HHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHH
Confidence            33334444444333  2444444433333             3456999999999997653322222    244555555


Q ss_pred             HHHHHHHHHHHHHHcCceeeeCCCCceEEccCC----CEEEccccccchhhch
Q 042539          130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSG----HVTLTDFDLSRNLVKK  178 (412)
Q Consensus       130 ~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g----~vkL~DFGla~~~~~~  178 (412)
                      ++.|++       ..|++|+|+||.||+++.+|    .++++|||++..+...
T Consensus       272 ~~~Qif-------~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        272 FFTQVF-------RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             HHHHHH-------hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence            555554       59999999999999999988    9999999999887544

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.53  E-value=6.7e-14  Score=141.05  Aligned_cols=146  Identities=16%  Similarity=0.145  Sum_probs=96.9

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH------------------------------HHH------
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH------------------------------EAE------   67 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~------------------------------~~~------   67 (412)
                      +.||.|++|.||+|+.+     +++.||||+.+......-.                              +..      
T Consensus       123 ~plasaSigQVh~A~l~-----~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  197 (437)
T TIGR01982       123 KPLAAASIAQVHRARLV-----DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRE  197 (437)
T ss_pred             cceeeeehhheEEEEec-----CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHH
Confidence            67999999999999875     2345999998654211100                              000      


Q ss_pred             HHHHHHHHHHhhcC----CCccceeeeeE-EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHH-HHHHH
Q 042539           68 RRARWEIRVLSRLS----HPFLPKLLGSL-ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC-AIEHL  141 (412)
Q Consensus        68 ~~~~~Ei~il~~l~----hpnIv~l~~~~-~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~-aL~yL  141 (412)
                      -.+.+|++.+..+.    |.+-+.+-.++ .....-++||||++|++|.++......+ .+   ...++.+++. .+..+
T Consensus       198 ldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~-~~---~~~ia~~~~~~~l~ql  273 (437)
T TIGR01982       198 LDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAG-LD---RKALAENLARSFLNQV  273 (437)
T ss_pred             HCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcC-CC---HHHHHHHHHHHHHHHH
Confidence            12344565555553    22222222222 2234568999999999998775443211 22   2334455554 47889


Q ss_pred             HHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539          142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus       142 H~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |..|++|+|+||.||+++.+|.++|+|||++..+...
T Consensus       274 ~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~~  310 (437)
T TIGR01982       274 LRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSEE  310 (437)
T ss_pred             HhCCceeCCCCcccEEECCCCcEEEEeCCCeeECCHH
Confidence            9999999999999999999999999999999887543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.48  E-value=6.6e-13  Score=134.27  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=97.3

Q ss_pred             CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHH
Q 042539           46 ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPS  125 (412)
Q Consensus        46 ~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~  125 (412)
                      .+.+|.|.+.+.+.-    .....+.+-++-|+.++||||+++++.++.+..+|||+|-+.-  |..++..     +...
T Consensus        36 ~~~~vsVF~~~~~~~----~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~P--l~~~lk~-----l~~~  104 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNG----EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRP--LETVLKE-----LGKE  104 (690)
T ss_pred             cCCceEEEEEeCCCc----hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeecccc--HHHHHHH-----hHHH
Confidence            455588888866542    2334455577899999999999999999999999999999953  4445544     3467


Q ss_pred             HHHHHHHHHHHHHHHHH-HcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          126 VIRFYLSEIICAIEHLH-NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       126 ~~~~~~~qi~~aL~yLH-~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      .+..-+.||+.||.||| +.+++|++|.-+.++++..|.+||++|-++...
T Consensus       105 ~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~  155 (690)
T KOG1243|consen  105 EVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKA  155 (690)
T ss_pred             HHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEecc
Confidence            78888999999999997 668999999999999999999999999988543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.47  E-value=4.6e-13  Score=119.71  Aligned_cols=146  Identities=14%  Similarity=0.170  Sum_probs=103.5

Q ss_pred             eeeeeccCceEEEEEEEcCC--CCCCCCceEEeeecchhhh--h--------------------hHHHHHHHHHHHHHHh
Q 042539           23 LKILGKGAMGTVFLVHDRAA--DPTARCPFALKVVDKSTLH--A--------------------KHEAERRARWEIRVLS   78 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~--~~~~~~~vAiK~i~~~~~~--~--------------------~~~~~~~~~~Ei~il~   78 (412)
                      ...||.|--+.||.|.....  ....+..+|||+.+-+...  .                    ......-+.+|.+.|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            46799999999999975421  0112345999988643210  0                    1111222447999999


Q ss_pred             hcC--CCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHH-HHcCceeeeCCCCc
Q 042539           79 RLS--HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL-HNMGIAYRDLKPEN  155 (412)
Q Consensus        79 ~l~--hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yL-H~~~iiHrDlKp~N  155 (412)
                      ++.  .-++...+++    ..-+|||||+.|+.+..-..  ....+++.++..+..|++.+|..| |+.||||+||++.|
T Consensus        82 rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~L--kd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~N  155 (197)
T cd05146          82 RMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKL--KDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYN  155 (197)
T ss_pred             HHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhh--hccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHH
Confidence            996  3567777765    45689999997754422111  112366677788889999999999 89999999999999


Q ss_pred             eEEccCCCEEEccccccchh
Q 042539          156 ILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~  175 (412)
                      ||++ +|.+.|+|||.|...
T Consensus       156 IL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         156 MLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             EEEE-CCcEEEEECCCceeC
Confidence            9996 578999999988654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.46  E-value=2.3e-13  Score=119.17  Aligned_cols=129  Identities=19%  Similarity=0.163  Sum_probs=94.9

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc-cceeeeeEEeCCeEEEE
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF-LPKLLGSLETDEFLAWA  101 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~l~~~~~~~~~~~lv  101 (412)
                      ++.|+.|.++.||+++..      +..|++|+......     ......+|+.+++.+.+.+ +.+++.+..  ...++|
T Consensus         3 ~~~l~~G~~~~vy~~~~~------~~~~~lK~~~~~~~-----~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv   69 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA------NKKYVVRIPGNGTE-----LLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLI   69 (170)
T ss_pred             eeecCCcccCceEEEEEC------CeEEEEEeCCCCcc-----cccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEE
Confidence            578899999999998864      22399998754421     1112345888999886544 445555443  335799


Q ss_pred             eeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCc-----eeeeCCCCceEEccCCCEEEccccccchh
Q 042539          102 VPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGI-----AYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       102 ~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~i-----iHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ||+++|.++...    .   .   ....++.+++.+|..||+.++     +|+|++|.||+++ ++.++++|||.+...
T Consensus        70 ~e~i~G~~l~~~----~---~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~  137 (170)
T cd05151          70 TEFIEGSELLTE----D---F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMN  137 (170)
T ss_pred             EEecCCCccccc----c---c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCC
Confidence            999999987532    0   1   123456799999999999985     9999999999998 678999999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=4.1e-14  Score=141.56  Aligned_cols=251  Identities=20%  Similarity=0.226  Sum_probs=183.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~   92 (412)
                      .....+|..+..||.|.|+.|+.+..+.   .+++.|++|-+.+.....  .....-+.|+.+...+. |.++++.+..|
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~---~~~~~Y~~ke~~~~l~~~--~~di~sl~ev~l~~~l~~~~~~~g~~~~W  335 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRP---EGDCIYAAKELLNGLATF--ASDIFSLGEVILEAILGSHLPSVGKNSSW  335 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecC---CCCceEeChhhhccccch--HhhhcchhhhhHhhHhhcccccCCCCCCc
Confidence            3456789999999999999999876432   245669999886654322  22344556888888886 99999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDFDL  171 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DFGl  171 (412)
                      ....+.|+-.|||.|+++.......  ..+.+...+.+..|++.++.++|+..++|+|+||+||++..+ +..++.|||.
T Consensus       336 ~~~r~~~ip~e~~~~~s~~l~~~~~--~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~  413 (524)
T KOG0601|consen  336 SQLRQGYIPLEFCEGGSSSLRSVTS--QMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGC  413 (524)
T ss_pred             cccccccCchhhhcCcchhhhhHHH--HhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhcccccc
Confidence            9999999999999999886554322  248899999999999999999999999999999999999886 6779999998


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ...+.-.                                                                  ...+.++
T Consensus       414 ~t~~~~~------------------------------------------------------------------~~~~~~~  427 (524)
T KOG0601|consen  414 WTRLAFS------------------------------------------------------------------SGVFHHI  427 (524)
T ss_pred             cccccee------------------------------------------------------------------ccccccc
Confidence            8642100                                                                  0111223


Q ss_pred             CCCc--cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-CCCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYV--SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-TPEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~--APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-~~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      -.++  +++......+..++|++|||..+.+.++|...=.......   .+..+ .+..++....+..+...++..++..
T Consensus       428 ~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~~---~i~~~~~p~~~~~~~~~q~~~kv~~~~~~~~  504 (524)
T KOG0601|consen  428 DRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQSL---TIRSGDTPNLPGLKLQLQVLLKVMINPDRKR  504 (524)
T ss_pred             ccccccchhhccccccccccccccccccccccccCcccCcccccce---eeecccccCCCchHHhhhhhhhhhcCCcccc
Confidence            3344  5555556677889999999999999999875433222111   12222 2334444567888899999999999


Q ss_pred             cCCCCCChhhhhcCCC
Q 042539          329 RLGYLRGACEIKEHVF  344 (412)
Q Consensus       329 R~~~~~~~~e~l~h~f  344 (412)
                      |+.    +.++..|.=
T Consensus       505 ~~l----~~~l~~~~~  516 (524)
T KOG0601|consen  505 RPS----AVELSLHSE  516 (524)
T ss_pred             chh----hhhhcccch
Confidence            984    556555543

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=1.2e-13  Score=128.53  Aligned_cols=211  Identities=16%  Similarity=0.172  Sum_probs=145.8

Q ss_pred             HHHhhcCCCccceeeeeEEeCC-----eEEEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcC--
Q 042539           75 RVLSRLSHPFLPKLLGSLETDE-----FLAWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMG--  145 (412)
Q Consensus        75 ~il~~l~hpnIv~l~~~~~~~~-----~~~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~--  145 (412)
                      .-|-++.|.|||+++.++.+..     ...+++||+..|+|..+++...  ...+....-+.|+.||+.||.|||+..  
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Pp  198 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCc
Confidence            3455556999999999997543     5899999999999988776533  234777888899999999999999986  


Q ss_pred             ceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCcccccccc
Q 042539          146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTK  225 (412)
Q Consensus       146 iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (412)
                      |+|+++..+-|++..+|-+|+.--.-...-     .                    -..+.                   
T Consensus       199 iihgnlTc~tifiq~ngLIkig~~ap~s~h-----~--------------------s~~~~-------------------  234 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIGSVAPDSTH-----P--------------------SVNST-------------------  234 (458)
T ss_pred             cccCCcchhheeecCCceEEecccCccccc-----h--------------------hhhhh-------------------
Confidence            999999999999999998887532111000     0                    00000                   


Q ss_pred             ccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCC-CCCCCHHHHHHHHhcCC
Q 042539          226 SARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTP-FRGKNRKETFRNVLMKT  304 (412)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~P-f~~~~~~~~~~~i~~~~  304 (412)
                                     .......-.|-++|.|||.=.....+.++|||++|....+|..+..- -.+.+..+.-.++....
T Consensus       235 ---------------~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i  299 (458)
T KOG1266|consen  235 ---------------REAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVI  299 (458)
T ss_pred             ---------------hHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhhe
Confidence                           00011111345678899876666667899999999999999887643 33333222222222211


Q ss_pred             CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          305 PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       305 ~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                        +....+.-+++|.+||+..|..|+    ++.+++-||-+-++.-
T Consensus       300 --~~len~lqr~~i~kcl~~eP~~rp----~ar~llfHpllfeVhs  339 (458)
T KOG1266|consen  300 --IGLENGLQRGSITKCLEGEPNGRP----DARLLLFHPLLFEVHS  339 (458)
T ss_pred             --eeccCccccCcCcccccCCCCCCc----chhhhhcCceeeecch
Confidence              111123346899999999999999    6999999998766653

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.28  E-value=4.2e-11  Score=104.11  Aligned_cols=135  Identities=19%  Similarity=0.197  Sum_probs=95.8

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh----hHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA----KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      ..+++|+-+.++.+.+....      +.+|.=.++....    ..--..+..+|++++.++.--.|..-+=++.+.....
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~------av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~   75 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLP------AVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGL   75 (204)
T ss_pred             chhhCCcceeEEeeeccCcc------eEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCE
Confidence            46789999999988654322      5666332222211    1223456778999999997444444444445566778


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      |+|||++|..|.+.+...         .-.++..+=.-+.-||..||||+||.++||++...+ +.++||||++.
T Consensus        76 I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          76 IVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             EEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            999999998887665443         134566677778899999999999999999996655 99999999974

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.25  E-value=7.3e-11  Score=102.24  Aligned_cols=146  Identities=20%  Similarity=0.172  Sum_probs=106.2

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEe-----eecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALK-----VVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK-----~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .+..|-+|+-+.|+++.+.+..      +.||     ..+...+. ..-..++..+|+++|.++.--.|.--.-+|.+..
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~------~iIK~Rf~K~YRHP~LD-~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~   83 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEA------AIIKERFSKRYRHPALD-QKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTY   83 (229)
T ss_pred             cceeeeccceeeEeeeccCCce------eEEeecccccccchHHH-HHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC
Confidence            6788999999999988775432      4554     22222332 2345678888999999997444444444566777


Q ss_pred             eEEEEeeccCC-CCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC---EEEcccccc
Q 042539           97 FLAWAVPYCPG-GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLS  172 (412)
Q Consensus        97 ~~~lv~e~~~g-g~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~---vkL~DFGla  172 (412)
                      .-+|+|||++| .++..++...............++.+|=..|.-||+++|||+||..+||++..+|.   +.|+|||++
T Consensus        84 ~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls  163 (229)
T KOG3087|consen   84 GGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLS  163 (229)
T ss_pred             CCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecch
Confidence            77899999988 35555555544333444444788899999999999999999999999999987763   589999998


Q ss_pred             ch
Q 042539          173 RN  174 (412)
Q Consensus       173 ~~  174 (412)
                      ..
T Consensus       164 ~~  165 (229)
T KOG3087|consen  164 SV  165 (229)
T ss_pred             hc
Confidence            64

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.21  E-value=8.3e-11  Score=107.34  Aligned_cols=142  Identities=20%  Similarity=0.233  Sum_probs=105.3

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC--CccceeeeeEEeC---Ce
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH--PFLPKLLGSLETD---EF   97 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h--pnIv~l~~~~~~~---~~   97 (412)
                      ++.||.|..+.||++....     +..+++|+.......   .....+.+|+++++.+.+  ..+.+++.+....   +.
T Consensus         3 ~~~l~~G~~n~~~~v~~~~-----g~~~ilK~~~~~~~~---~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~   74 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGG-----GRRLVLRRPPPGALL---PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGT   74 (223)
T ss_pred             ceecCCCccceEEEEEecC-----CcceEEEeCCCcccC---cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCC
Confidence            3678999999999987643     234999987654321   123345669999999975  4567777776654   36


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH----------------------------------
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN----------------------------------  143 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~----------------------------------  143 (412)
                      .++||||+.|.++...+..   ..+++.....++.+++.+|..||+                                  
T Consensus        75 ~~~v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (223)
T cd05154          75 PFYVMERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRT  151 (223)
T ss_pred             ceEEEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcc
Confidence            7899999999988654321   236777777778888888888874                                  


Q ss_pred             ----------------------cCceeeeCCCCceEEcc--CCCEEEccccccchh
Q 042539          144 ----------------------MGIAYRDLKPENILIRQ--SGHVTLTDFDLSRNL  175 (412)
Q Consensus       144 ----------------------~~iiHrDlKp~NiLl~~--~g~vkL~DFGla~~~  175 (412)
                                            ..++|+|+.|.||+++.  ++.+.|+||+.+...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g  207 (223)
T cd05154         152 DEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLG  207 (223)
T ss_pred             cccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccC
Confidence                                  23699999999999998  567899999988754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.21  E-value=1.2e-11  Score=125.64  Aligned_cols=166  Identities=17%  Similarity=0.236  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhh
Q 042539          132 SEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRW  210 (412)
Q Consensus       132 ~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (412)
                      .++.+|+.|+|+. ++||++|.|++|.++.+|.+||++|+.+.......++....                         
T Consensus       106 ~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~-------------------------  160 (700)
T KOG2137|consen  106 GNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSE-------------------------  160 (700)
T ss_pred             hcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCcccccc-------------------------
Confidence            3455999999975 89999999999999999999999999886554322221100                         


Q ss_pred             hccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHh-hCCCCCC
Q 042539          211 LHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFR  289 (412)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell-~g~~Pf~  289 (412)
                                                   .+........-...|.|||.+.+...+.++|++||||++|.+. .|+..+.
T Consensus       161 -----------------------------yd~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~  211 (700)
T KOG2137|consen  161 -----------------------------YDPPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIA  211 (700)
T ss_pred             -----------------------------CCCCCChhhccCcccccchhhccccccccccceeeeeEEEEEecCCcchhh
Confidence                                         1112222334466899999999988899999999999999999 6777776


Q ss_pred             CCCHHHHHHHHh--cCCC---CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcc
Q 042539          290 GKNRKETFRNVL--MKTP---EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD  355 (412)
Q Consensus       290 ~~~~~~~~~~i~--~~~~---~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~  355 (412)
                      +.+....+..-.  .+-.   .-..++.++++=|.++|..++..|+    ++.+++..+||.+.....++.
T Consensus       212 a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp----~~~~l~~~~ff~D~~~~aLrf  278 (700)
T KOG2137|consen  212 ANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRP----TLDLLLSIPFFSDPGLKALRF  278 (700)
T ss_pred             ccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCc----chhhhhcccccCCchhhhhhh
Confidence            653332222111  1111   1135678999999999999999999    689999999999887665544

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.13  E-value=6.1e-10  Score=99.19  Aligned_cols=101  Identities=30%  Similarity=0.326  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhhcCCC--ccceeeeeEEeCCeEEEEeeccC--CCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHH-
Q 042539           66 AERRARWEIRVLSRLSHP--FLPKLLGSLETDEFLAWAVPYCP--GGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH-  140 (412)
Q Consensus        66 ~~~~~~~Ei~il~~l~hp--nIv~l~~~~~~~~~~~lv~e~~~--gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~y-  140 (412)
                      ....+.+|.+.|.++..-  ++.+.+++.    .-+|||||+.  |..+..+....    ++......++.+++..+.. 
T Consensus        51 ~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~----~~~ivME~I~~~G~~~~~l~~~~----~~~~~~~~~~~~il~~~~~~  122 (188)
T PF01163_consen   51 IREWAKKEFRNLKRLYEAGVPVPKPYDYN----RNVIVMEYIGEDGVPLPRLKDVD----LSPEEPKELLEEILEEIIKM  122 (188)
T ss_dssp             HHHHHHHHHHHHHHCCCTT-SS--EEEEE----TTEEEEE--EETTEEGGCHHHCG----GGGSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCccCCcEEEEe----CCEEEEEecCCCccchhhHHhcc----ccchhHHHHHHHHHHHHHHH
Confidence            445678899999999844  677777553    2379999998  76665543322    3356667788888886665 


Q ss_pred             HHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       141 LH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +|+.||+|+||.+.|||++.+ .+.|+|||.+...
T Consensus       123 ~~~~givHGDLs~~NIlv~~~-~~~iIDf~qav~~  156 (188)
T PF01163_consen  123 LHKAGIVHGDLSEYNILVDDG-KVYIIDFGQAVDS  156 (188)
T ss_dssp             HHCTTEEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred             HHhcCceecCCChhhEEeecc-eEEEEecCcceec
Confidence            579999999999999999877 9999999988754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=99.08  E-value=3.2e-09  Score=104.95  Aligned_cols=213  Identities=16%  Similarity=0.224  Sum_probs=147.1

Q ss_pred             ceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe----CCeEEEEeeccC
Q 042539           31 MGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET----DEFLAWAVPYCP  106 (412)
Q Consensus        31 fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~----~~~~~lv~e~~~  106 (412)
                      -.+.|+|.....|..    |++|.+..........    ...-+++++++.|.|||.+.++|.+    +..+++|++|.+
T Consensus       289 ~~Ttyk~~s~~DG~~----YvLkRlhg~r~~~~nk----~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP  360 (655)
T KOG3741|consen  289 SITTYKATSNVDGNA----YVLKRLHGDRDQSTNK----DTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYP  360 (655)
T ss_pred             cceeEeeeeccCCce----eeeeeeccccccCccc----chHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCC
Confidence            356788777665554    9999994333222111    1225678999999999999999974    357999999998


Q ss_pred             C-CCchhHHHh-------------hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539          107 G-GDLNVLRYK-------------QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus       107 g-g~L~~~~~~-------------~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      + ++|.++-..             ..+...+|..++.|+.|+..||.++|+.|+.-+-|.|.+||++.+-.++|..-|+.
T Consensus       361 ~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~  440 (655)
T KOG3741|consen  361 SSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIM  440 (655)
T ss_pred             CCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEEEecccce
Confidence            6 455443221             12335789999999999999999999999999999999999998888888877765


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      -.+....                                                                      +  
T Consensus       441 Dvl~~d~----------------------------------------------------------------------~--  448 (655)
T KOG3741|consen  441 DVLQEDP----------------------------------------------------------------------T--  448 (655)
T ss_pred             eeecCCC----------------------------------------------------------------------C--
Confidence            3321100                                                                      0  


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCC-CCCCCHHHH-HHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTP-FRGKNRKET-FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~P-f~~~~~~~~-~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                           |-+.   .-++-|.=.||.+++.|.||..= +......+. .+.|      ....+.+++++|.-+..-++.++ 
T Consensus       449 -----~~le---~~Qq~D~~~lG~ll~aLAt~~~ns~~~d~~~~s~~~~I------~~~yS~D~rn~v~yl~s~~~~~k-  513 (655)
T KOG3741|consen  449 -----EPLE---SQQQNDLRDLGLLLLALATGTENSNRTDSTQSSHLTRI------TTTYSTDLRNVVEYLESLNFREK-  513 (655)
T ss_pred             -----cchh---HHhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHh------hhhhhHHHHHHHHHHHhcCcccc-
Confidence                 1111   12467888999999999999642 222222222 2222      23456789999999988888853 


Q ss_pred             CCCCChhhhhcC
Q 042539          331 GYLRGACEIKEH  342 (412)
Q Consensus       331 ~~~~~~~e~l~h  342 (412)
                          ++.+++.+
T Consensus       514 ----sI~~llp~  521 (655)
T KOG3741|consen  514 ----SIQDLLPM  521 (655)
T ss_pred             ----cHHHHHHH
Confidence                46777655

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.04  E-value=4.9e-09  Score=98.82  Aligned_cols=106  Identities=15%  Similarity=0.091  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhcCC--CccceeeeeEEe-----CCeEEEEeeccCCC-CchhHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 042539           69 RARWEIRVLSRLSH--PFLPKLLGSLET-----DEFLAWAVPYCPGG-DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH  140 (412)
Q Consensus        69 ~~~~Ei~il~~l~h--pnIv~l~~~~~~-----~~~~~lv~e~~~gg-~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~y  140 (412)
                      .+.+|.+.+..|..  -.++.++.+++.     ...-+||||++.|. +|.+++........++.....++.++...+.-
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~  153 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRD  153 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            36678888888853  334455555543     23578999999886 78777643222335677888999999999999


Q ss_pred             HHHcCceeeeCCCCceEEcc-------CCCEEEccccccch
Q 042539          141 LHNMGIAYRDLKPENILIRQ-------SGHVTLTDFDLSRN  174 (412)
Q Consensus       141 LH~~~iiHrDlKp~NiLl~~-------~g~vkL~DFGla~~  174 (412)
                      ||++||+|+|+++.|||++.       ++.+.|+||+.++.
T Consensus       154 LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        154 MHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            99999999999999999985       46799999998853

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.87  E-value=3e-08  Score=90.09  Aligned_cols=107  Identities=31%  Similarity=0.332  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHhhcC--CCccceeeeeEEeCC----eEEEEeeccCCC-CchhHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 042539           67 ERRARWEIRVLSRLS--HPFLPKLLGSLETDE----FLAWAVPYCPGG-DLNVLRYKQNDRVFSPSVIRFYLSEIICAIE  139 (412)
Q Consensus        67 ~~~~~~Ei~il~~l~--hpnIv~l~~~~~~~~----~~~lv~e~~~gg-~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~  139 (412)
                      ..+..+|...+..|.  .-.++..+.+.+...    ..+||+|+++|. +|..++.....  .+......++.++...+.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~  132 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIA  132 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHH
Confidence            446777888888885  334566666665432    468999999884 78777665333  667788899999999999


Q ss_pred             HHHHcCceeeeCCCCceEEccCC---CEEEccccccchh
Q 042539          140 HLHNMGIAYRDLKPENILIRQSG---HVTLTDFDLSRNL  175 (412)
Q Consensus       140 yLH~~~iiHrDlKp~NiLl~~~g---~vkL~DFGla~~~  175 (412)
                      -||++||+|+|+++.|||++.++   .+.|+||+.++..
T Consensus       133 ~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  133 KLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            99999999999999999999987   8999999988754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.79  E-value=1.4e-07  Score=85.19  Aligned_cols=142  Identities=18%  Similarity=0.176  Sum_probs=92.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHH-----HHHHHHHHhhcC---CCccce
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR-----ARWEIRVLSRLS---HPFLPK   87 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~-----~~~Ei~il~~l~---hpnIv~   87 (412)
                      .-.+|++++++-......|.+..-..      ..+.+|+.+.............     ..+++..+..+.   .-.+..
T Consensus        29 ~~~~~~~~kv~k~~~r~~ValIei~~------~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~  102 (229)
T PF06176_consen   29 LDNNYKIIKVFKNTKRNYVALIEIDG------KKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPAD  102 (229)
T ss_pred             HhCCceEEEeecCCCccEEEEEEECC------cEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCcccccc
Confidence            34678888999888888888776533      2389998765432211111111     233444444443   233334


Q ss_pred             eeeeEEe-----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC
Q 042539           88 LLGSLET-----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        88 l~~~~~~-----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g  162 (412)
                      ++.+.+.     ....+++|||++|..|.++..      +++.    +...+..++.-||+.|+.|+|..|.|++++.+ 
T Consensus       103 ~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e~----~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~-  171 (229)
T PF06176_consen  103 PYLAAEKKIFRYTSSYVLLMEYIEGVELNDIED------IDED----LAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNN-  171 (229)
T ss_pred             ceeeeeeeeccceeEEEEEEEEecCeecccchh------cCHH----HHHHHHHHHHHHHHcCCccCCCCcCcEEEECC-
Confidence            3333322     235678999999998865532      3332    34567778999999999999999999999855 


Q ss_pred             CEEEccccccch
Q 042539          163 HVTLTDFDLSRN  174 (412)
Q Consensus       163 ~vkL~DFGla~~  174 (412)
                      .++++||+..+.
T Consensus       172 ~i~iID~~~k~~  183 (229)
T PF06176_consen  172 GIRIIDTQGKRM  183 (229)
T ss_pred             cEEEEECccccc
Confidence            599999987654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.70  E-value=1.6e-09  Score=109.40  Aligned_cols=241  Identities=18%  Similarity=0.210  Sum_probs=162.8

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc-cceeeeeEEeCCe
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF-LPKLLGSLETDEF   97 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~l~~~~~~~~~   97 (412)
                      -+...+-+++|+++++++.|..++..     ...+++...       ...+  -++++|.+++||| .+..++-++.+..
T Consensus       243 ws~~fh~fvK~altknpKkRptaekl-----L~h~fvs~~-------l~~r--l~~eLLdK~n~P~~~v~~~~d~~~E~~  308 (829)
T KOG0576|consen  243 WSEFFHNFVKGALTKNPKKRPTAEKL-----LQHPFVSQT-------LSRR--LAIELLDKVNNPNPVVRYLEDYDGEDY  308 (829)
T ss_pred             chHHHHHHHHHHhcCCCccCCChhhh-----eeceeeccc-------hhhH--HHHHHHHHccCCCCcccccccCCcccc
Confidence            45677888999999999876654322     235655322       1222  2889999999999 7777777777889


Q ss_pred             EEEEeeccCCC-CchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           98 LAWAVPYCPGG-DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        98 ~~lv~e~~~gg-~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+++|++|.++ +-... .....-.+.+-+...+.+.-..+++++|+.-=+|||    ||+..+ +..|..||+....+.
T Consensus       309 ~~i~~~i~s~~rs~~~~-~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~  382 (829)
T KOG0576|consen  309 LWIPMRICSTGRSSALE-MTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRD----NILGSE-EEVKLLDFAVPPQLT  382 (829)
T ss_pred             cchhhhhhcCCcccccc-CChhhHhhhhhhhhhhhhhhcccccccccccccCcc----cccccc-cccccccccCCcccC
Confidence            99999999887 21111 111111255555666777888899999998778998    777644 788999998775431


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                                                                                      ..-..+++.+|+.++|
T Consensus       383 ----------------------------------------------------------------~~~~~~t~~~~~~~~~  398 (829)
T KOG0576|consen  383 ----------------------------------------------------------------RTMKPRTAIGTPEPLA  398 (829)
T ss_pred             ----------------------------------------------------------------cccccccCCCCCCCCC
Confidence                                                                            1113457789999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCCCC---CC-hHHHHHHHHhhhhCCCccC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEFVG---QR-TALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~~~---~~-~~~~dli~~~L~~dP~~R~  330 (412)
                      ||+.....+....|.||+|+-..+|.-|-+|-...-  .....+-.+.  +.+..   .+ ..-+++...|+..-|..|.
T Consensus       399 pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~P~--~~~~~~g~~p~s~~L~~~~aw~~~~~~~~~~~~~~g~P~~pk  476 (829)
T KOG0576|consen  399 PEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSSPP--AVLPMIGNGPNSPMLTDKSAWSPVFHRDFPAPCLNGLPPTPK  476 (829)
T ss_pred             chhhcccccccCCCccCCCcchhhcCCCCCCCCCCc--cccCCCCCCCCccccchhhhcCcccccCCcccccCCCCCCCc
Confidence            999999999999999999998778887877754410  0000000000  00000   00 1112577788888888887


Q ss_pred             CCCCChhhhhcCCCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~~  349 (412)
                          +...++-|.+|+++.
T Consensus       477 ----v~mgacfsKvfngCp  491 (829)
T KOG0576|consen  477 ----VHMGACFSKVFNGCP  491 (829)
T ss_pred             ----chhhHHHHHHhccCc
Confidence                678888899998865

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.69  E-value=1.7e-07  Score=90.90  Aligned_cols=233  Identities=18%  Similarity=0.261  Sum_probs=148.3

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeE------E
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSL------E   93 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~------~   93 (412)
                      -..+.||+|+-+.+|-.-...     +  .+-|+..+.......+       .+..|... .||-+-.=+.+=      -
T Consensus        14 ~~gr~LgqGgea~ly~l~e~~-----d--~VAKIYh~Pppa~~aq-------k~a~la~~p~~p~~~~rvaWPqa~L~G~   79 (637)
T COG4248          14 PPGRPLGQGGEADLYTLGEVR-----D--QVAKIYHAPPPAAQAQ-------KVAELAATPDAPLLNYRVAWPQATLHGG   79 (637)
T ss_pred             CCCccccCCccceeeecchhh-----c--hhheeecCCCchHHHH-------HHHHhccCCCCcchhhhhcccHHHhhCC
Confidence            356789999999999543221     1  2457776544322111       22334444 466443312211      1


Q ss_pred             e-CCeEEEEeeccCCCCchhHHHh-----hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           94 T-DEFLAWAVPYCPGGDLNVLRYK-----QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        94 ~-~~~~~lv~e~~~gg~L~~~~~~-----~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      + +..+-++|..+.|..=-..++.     +....+..+-+....+.++.+..-||.+|.+-+|+.++|||+++.+.|.|.
T Consensus        80 ~~~~~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LV  159 (637)
T COG4248          80 RRGKVIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLV  159 (637)
T ss_pred             CccceeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEE
Confidence            2 2337889999887532112221     112235667888899999999999999999999999999999999999998


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |=..-. +                                                               ..++.....
T Consensus       160 dsDsfq-i---------------------------------------------------------------~~ng~~~~c  175 (637)
T COG4248         160 DSDSFQ-I---------------------------------------------------------------NANGTLHLC  175 (637)
T ss_pred             ccccee-e---------------------------------------------------------------ccCCceEec
Confidence            732110 0                                                               023344456


Q ss_pred             cccCCCCccceeec-----CCCCCchhhHHHHHHHHHHHhhC-CCCCCCCC-------HHH-HHHHHhc-----------
Q 042539          248 FVGTEEYVSPEVVR-----GDGHEFAVDWWALGILTYEMLYG-TTPFRGKN-------RKE-TFRNVLM-----------  302 (412)
Q Consensus       248 ~~gt~~Y~APE~l~-----~~~~~~~~DiwSlGvil~ell~g-~~Pf~~~~-------~~~-~~~~i~~-----------  302 (412)
                      -+|.+.|.+||.-.     +-.-+...|.|-|||++|+++.| +.||.|..       ..+ .+.....           
T Consensus       176 pVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~  255 (637)
T COG4248         176 PVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLK  255 (637)
T ss_pred             ccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCC
Confidence            68999999999754     33446789999999999999876 99998742       112 1111110           


Q ss_pred             ---CCCCCCCCChHHHHHHHHhhhh--CCCccCC
Q 042539          303 ---KTPEFVGQRTALTDLIQRLLEK--DPVKRLG  331 (412)
Q Consensus       303 ---~~~~~~~~~~~~~dli~~~L~~--dP~~R~~  331 (412)
                         ..+++...++++..|..+|+..  ++.-||+
T Consensus       256 p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~  289 (637)
T COG4248         256 PPPRSIPLSMLPPDVQALFQQAFTESGVATPRPT  289 (637)
T ss_pred             CCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCC
Confidence               0122334568888999999864  3567885

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.62  E-value=2e-07  Score=86.05  Aligned_cols=137  Identities=22%  Similarity=0.230  Sum_probs=98.1

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh------h------------HHHHHHHHHHHHHHhhcCC
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA------K------------HEAERRARWEIRVLSRLSH   82 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~------~------------~~~~~~~~~Ei~il~~l~h   82 (412)
                      .+...||-|--+.||.|.+..     +..+|||.=+.....-      +            ......+.+|.++|..|..
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~-----g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~  168 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPK-----GRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYP  168 (304)
T ss_pred             hhccccccCccceEEEEECCC-----CCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhh
Confidence            356789999999999998752     3348998533211100      0            1123457789999999974


Q ss_pred             C--ccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc
Q 042539           83 P--FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ  160 (412)
Q Consensus        83 p--nIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~  160 (412)
                      .  .|.+-++    .+...+|||+++|-.|....       ++...+..++..|+.-+.-+-..||||+|+.+=||+++.
T Consensus       169 ~G~~VP~P~~----~nRHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~  237 (304)
T COG0478         169 EGVKVPKPIA----WNRHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTE  237 (304)
T ss_pred             cCCCCCCccc----cccceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEec
Confidence            3  5666655    35568999999998775432       234455556666776666666899999999999999999


Q ss_pred             CCCEEEccccccc
Q 042539          161 SGHVTLTDFDLSR  173 (412)
Q Consensus       161 ~g~vkL~DFGla~  173 (412)
                      +|.+.++||--+.
T Consensus       238 dg~~~vIDwPQ~v  250 (304)
T COG0478         238 DGDIVVIDWPQAV  250 (304)
T ss_pred             CCCEEEEeCcccc
Confidence            9999999997553

>PRK09902 hypothetical protein; Provisional

Probab=98.60  E-value=6.2e-07  Score=80.76  Aligned_cols=142  Identities=14%  Similarity=0.132  Sum_probs=99.8

Q ss_pred             eccCceEEEEEEEcCCCCCCCCceEEeeecchh---hhhhHHHHHHHHHHHHHHhhcCC--CccceeeeeEEeC----Ce
Q 042539           27 GKGAMGTVFLVHDRAADPTARCPFALKVVDKST---LHAKHEAERRARWEIRVLSRLSH--PFLPKLLGSLETD----EF   97 (412)
Q Consensus        27 G~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~---~~~~~~~~~~~~~Ei~il~~l~h--pnIv~l~~~~~~~----~~   97 (412)
                      |+||-+-|+.....+.      .|-+|.-....   +.. .--...+.+|...+..|..  -.+.+....-...    -.
T Consensus        27 ~rgG~SgV~r~~~~g~------~~ylKrq~nhl~~s~r~-P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~r   99 (216)
T PRK09902         27 RRNGMSGVQCVERNGK------KLYVKRMTHHLFHSVRY-PFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWR   99 (216)
T ss_pred             CCCCcceEEEEEeCCc------EEEEEeccCcccccccC-CCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceE
Confidence            5588888987654332      26777653111   110 1234567789999999963  3355555222221    24


Q ss_pred             EEEEeeccCC-CCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC--EEEccccccch
Q 042539           98 LAWAVPYCPG-GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH--VTLTDFDLSRN  174 (412)
Q Consensus        98 ~~lv~e~~~g-g~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~--vkL~DFGla~~  174 (412)
                      -+||+|-+.| -+|..++....-...++.....++.++...|.-||+.|+.|+|+-+.|||++..|.  ++++||.-++.
T Consensus       100 A~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        100 ALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            7899997754 57766654433334677888899999999999999999999999999999987777  99999998876


Q ss_pred             h
Q 042539          175 L  175 (412)
Q Consensus       175 ~  175 (412)
                      .
T Consensus       180 ~  180 (216)
T PRK09902        180 R  180 (216)
T ss_pred             h
Confidence            5

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=9.7e-07  Score=95.11  Aligned_cols=243  Identities=21%  Similarity=0.235  Sum_probs=159.0

Q ss_pred             eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC----eEEEE
Q 042539           26 LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE----FLAWA  101 (412)
Q Consensus        26 LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~----~~~lv  101 (412)
                      |..-.+|+|+++++...-...-.++-++.=.-+.. ...........|+..+..+.|+|++.++.+.....    .+.+.
T Consensus       186 ls~~~~~~l~l~k~~~~~qs~~~~~~~s~~~~~~~-~~k~~i~~~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~  264 (1351)
T KOG1035|consen  186 LSHLTQGTLLLVKWVEQAQSLSEPIEISHDYESTP-CGKKEIQTTEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVL  264 (1351)
T ss_pred             eccccCceEEEEehhhhHHhhcCcccccCcccCcc-chHHHHHHHHHHHHHHHhhccccccceeEEeehhhcchHHHHHH
Confidence            66778888888876532221111122221111111 11123344455888888899999999998875443    23445


Q ss_pred             eeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCC---ceEEccCCCEEEc--cccccchhh
Q 042539          102 VPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPE---NILIRQSGHVTLT--DFDLSRNLV  176 (412)
Q Consensus       102 ~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~---NiLl~~~g~vkL~--DFGla~~~~  176 (412)
                      .++|.+-++...++...  ..+...++.+..+++.||.|+|+....|.-+...   +--.+..+.+.+.  ||+.++...
T Consensus       265 ~~~~s~~~~~~~~q~v~--~i~~~~~r~~~~~~~~GL~~~h~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~  342 (1351)
T KOG1035|consen  265 QEICSKVELRSLLQSVG--SIPLETLRILHQKLLEGLAYLHSLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLP  342 (1351)
T ss_pred             HhhcCccchHHHHhhcc--ccCHHHHHHHHHHHhhhHHHHHHhccceeEEecccccccccCccceeecchhhhcccccCC
Confidence            58899988877776554  4889999999999999999999997666655555   4444555666666  777766542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      +.                                                                ....+...+.-+.+
T Consensus       343 d~----------------------------------------------------------------~~~~~~~~~~~~~~  358 (1351)
T KOG1035|consen  343 DN----------------------------------------------------------------EKSFSDLLAEIRNA  358 (1351)
T ss_pred             Cc----------------------------------------------------------------ccchhhcCcccccc
Confidence            21                                                                11223344556888


Q ss_pred             ceeecCCCCCc--hhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          257 PEVVRGDGHEF--AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       257 PE~l~~~~~~~--~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      +|........+  ..|+|.+|..+..+..|..+-...   .+...++..     .......+++.+|+.-+.++|+    
T Consensus       359 ~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~---~~~~~~l~~-----~~~~~~~d~~~~~~~~~~~~Rl----  426 (1351)
T KOG1035|consen  359 DEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKS---AVPVSLLDV-----LSTSELLDALPKCLDEDSEERL----  426 (1351)
T ss_pred             ccccccccchhhhhhHHHHHHHHHhhhhhcCcccccc---cchhhhhcc-----ccchhhhhhhhhhcchhhhhcc----
Confidence            88888776644  479999999999998876543221   111112111     1112577899999999999999    


Q ss_pred             ChhhhhcCCCCCC
Q 042539          335 GACEIKEHVFFKG  347 (412)
Q Consensus       335 ~~~e~l~h~ff~~  347 (412)
                      .+.+++.|+|.+.
T Consensus       427 ~~~~ll~~~f~~~  439 (1351)
T KOG1035|consen  427 SALELLTHPFLRF  439 (1351)
T ss_pred             chhhhhhchhccc
Confidence            5899999999874

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.48  E-value=1e-06  Score=90.10  Aligned_cols=146  Identities=19%  Similarity=0.222  Sum_probs=94.2

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHH------------------------------HHH-----
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE------------------------------AER-----   68 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~------------------------------~~~-----   68 (412)
                      ..|+.++-|.||.|+.+.     ++.|||||.+..-...-..                              ..+     
T Consensus       131 ~PiAsASIaQVH~A~L~s-----G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~E  205 (517)
T COG0661         131 EPIASASIAQVHRAVLKS-----GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREE  205 (517)
T ss_pred             CchhhhhHhhheeEEecC-----CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHH
Confidence            578899999999999874     4559999987542211110                              011     


Q ss_pred             -HHHHHHHHHhhcC-----CCc--cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 042539           69 -RARWEIRVLSRLS-----HPF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH  140 (412)
Q Consensus        69 -~~~~Ei~il~~l~-----hpn--Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~y  140 (412)
                       .+.+|+.-+.++.     .++  |.++|  ++-...-.|+|||+.|-.+.+...... ..++...+...+.++.  +..
T Consensus       206 lDy~~EA~n~~~~~~nf~~~~~v~VP~V~--we~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f--~~q  280 (517)
T COG0661         206 LDYRREAANAERFRENFKDDPDVYVPKVY--WEYTTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAF--LRQ  280 (517)
T ss_pred             hCHHHHHHHHHHHHHHcCCCCCeEeceee--hhccCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHH--HHH
Confidence             1333555455443     122  22222  222334579999999998887754444 3466444444333333  234


Q ss_pred             HHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       141 LH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      +-..|+.|.|..|.||+++.+|.+.+.|||+...+....
T Consensus       281 ~~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~~  319 (517)
T COG0661         281 LLRDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPKF  319 (517)
T ss_pred             HHhcCccccCCCccceEEecCCcEEEEcCcceecCCHHH
Confidence            445899999999999999999999999999998875543

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.45  E-value=1.8e-06  Score=79.56  Aligned_cols=135  Identities=12%  Similarity=0.078  Sum_probs=82.6

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC--ccceeeeeEEeCCeEEEE
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP--FLPKLLGSLETDEFLAWA  101 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp--nIv~l~~~~~~~~~~~lv  101 (412)
                      ..||+|..+.||+..    +.    .+++|.......      ...+.+|.++++.+..-  -+.+.+++..+.+...+|
T Consensus         7 ~~i~~G~t~~~y~~~----~~----~~VlR~~~~~~~------~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv   72 (226)
T TIGR02172         7 TQTGEGGNGESYTHK----TG----KWMLKLYNPGFD------KETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLI   72 (226)
T ss_pred             eeecCCCCcceeEec----CC----CEEEEeCCCCCC------HHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeee
Confidence            678999999999731    21    278888754221      12346699999998633  357788888888888999


Q ss_pred             eeccCCCC-chhH---------------------HHhh--CCCCCCHHHHHHHHHH----------HHH-HHHHHHH---
Q 042539          102 VPYCPGGD-LNVL---------------------RYKQ--NDRVFSPSVIRFYLSE----------IIC-AIEHLHN---  143 (412)
Q Consensus       102 ~e~~~gg~-L~~~---------------------~~~~--~~~~l~~~~~~~~~~q----------i~~-aL~yLH~---  143 (412)
                      ||++.|.+ +...                     ++..  ....+.... ..+..+          +.. ...+|.+   
T Consensus        73 ~e~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~  151 (226)
T TIGR02172        73 YELIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYK-EKIRKFIEEKDFVPKDYKEKARAFIKEVPD  151 (226)
T ss_pred             eeecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHH-HHHHHHHHhccCCCHHHHHHHHHHHHhCCC
Confidence            99999964 1100                     0000  000111100 111000          111 1122221   


Q ss_pred             -cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          144 -MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       144 -~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                       ..++|+|+.|.||+++.+| +.|+||+.+..
T Consensus       152 ~~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       152 TSTCLHGDFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             CCceEecCCCCCcEEEcCCC-cEEEechhcCc
Confidence             2478999999999999888 99999998864

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.43  E-value=3.2e-06  Score=77.39  Aligned_cols=142  Identities=18%  Similarity=0.161  Sum_probs=96.8

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH--------------------HHHHHHHHHHHHHhhcC-
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH--------------------EAERRARWEIRVLSRLS-   81 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~--------------------~~~~~~~~Ei~il~~l~-   81 (412)
                      ...|..|--+.||+|...     .+..||+|+.+......+.                    ....=..+|..-|+++. 
T Consensus        53 ~g~istGKEA~Vy~a~~~-----~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~e  127 (268)
T COG1718          53 VGCISTGKEANVYLAETG-----DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYE  127 (268)
T ss_pred             EeeecCCcceEEEeeccC-----CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            347788888999998652     2344999999765442221                    11112445777777774 


Q ss_pred             -CCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEc
Q 042539           82 -HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIR  159 (412)
Q Consensus        82 -hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~  159 (412)
                       +-.+.+-+.+...    .|||||+... .. ---.-....++..++..+..+++..+.-|-. .|+||+||..=|||+.
T Consensus       128 AGVrvP~Pi~~~~n----VLvMEfIg~~-g~-pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~  201 (268)
T COG1718         128 AGVRVPEPIAFRNN----VLVMEFIGDD-GL-PAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH  201 (268)
T ss_pred             cCCCCCCceeecCC----eEEEEeccCC-CC-CCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE
Confidence             4455555555443    6999999443 11 0001112224555788899999999998876 8999999999999998


Q ss_pred             cCCCEEEccccccchhh
Q 042539          160 QSGHVTLTDFDLSRNLV  176 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~~  176 (412)
                       +|.+.|+|||-|....
T Consensus       202 -~~~p~iID~~QaV~~~  217 (268)
T COG1718         202 -DGEPYIIDVSQAVTID  217 (268)
T ss_pred             -CCeEEEEECccccccC
Confidence             8899999999887653

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.38  E-value=6.5e-06  Score=73.64  Aligned_cols=130  Identities=27%  Similarity=0.356  Sum_probs=89.2

Q ss_pred             ccCceeeeeeeccCc-eEEEEEEEcCCCCCCCCceEEeeecc---hh-------hhhhH-------HHHHHHHHHHHHHh
Q 042539           17 LDNLKALKILGKGAM-GTVFLVHDRAADPTARCPFALKVVDK---ST-------LHAKH-------EAERRARWEIRVLS   78 (412)
Q Consensus        17 ~~~y~~~~~LG~G~f-g~V~la~~~~~~~~~~~~vAiK~i~~---~~-------~~~~~-------~~~~~~~~Ei~il~   78 (412)
                      -.+++.++.||.|+- |.||+++..+.      .||+|+.+.   ..       .....       ....-+..|-+...
T Consensus        36 ~~~I~flefLg~g~~~~~V~kv~I~g~------~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfg  109 (207)
T PF13095_consen   36 GDDIEFLEFLGHGSHDGYVFKVEIDGR------IYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFG  109 (207)
T ss_pred             CCcEeeeeecCCCCceeEEEEEEECCe------EEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhH
Confidence            379999999999999 99999987542      499999322   10       00000       11223555777777


Q ss_pred             hcC---CCcc--ceeeeeEEeC------------------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHH
Q 042539           79 RLS---HPFL--PKLLGSLETD------------------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII  135 (412)
Q Consensus        79 ~l~---hpnI--v~l~~~~~~~------------------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~  135 (412)
                      +|+   +.++  |++++++.-.                  ....||-||+....           .+....    +.+|+
T Consensus       110 RLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~~~----~~~~~  174 (207)
T PF13095_consen  110 RLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQIRD----IPQML  174 (207)
T ss_pred             HHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccchhH----HHHHH
Confidence            775   4455  9999987311                  12467778775543           133333    46788


Q ss_pred             HHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539          136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus       136 ~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .-+..+|+.||+-+|+|+.|..     .=||+|||.+
T Consensus       175 ~dl~~~~k~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  175 RDLKILHKLGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             HHHHHHHHCCeeeccCcccccc-----CCEEEecccC
Confidence            8889999999999999999987     2478999864

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.34  E-value=7.5e-06  Score=74.85  Aligned_cols=141  Identities=25%  Similarity=0.332  Sum_probs=82.2

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-C-CccceeeeeEEe---CCe
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H-PFLPKLLGSLET---DEF   97 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-h-pnIv~l~~~~~~---~~~   97 (412)
                      ++.|+.|..+.||++.... +     .+++|+....      .....+.+|..+++.+. + .-+.+++.....   ...
T Consensus         2 i~~l~~G~~n~~~~v~~~~-~-----~~vlK~~~~~------~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~   69 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD-G-----RYVLKFYRPP------DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGF   69 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT-S-----EEEEEEESSH------HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSE
T ss_pred             CccCCCCCeeeEEEEEECC-c-----EEEEEEeCCC------CCHHHHHHHHHHHHHHHhcCCCCceEEeeccccccccc
Confidence            5789999999999988754 2     3899997543      23344556888888886 2 235677764432   345


Q ss_pred             EEEEeeccCCCCchh----------------HH---Hhh--CCCCCCHHH------HHHH---------------HHHHH
Q 042539           98 LAWAVPYCPGGDLNV----------------LR---YKQ--NDRVFSPSV------IRFY---------------LSEII  135 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~----------------~~---~~~--~~~~l~~~~------~~~~---------------~~qi~  135 (412)
                      .+++|+++.|..+..                .+   +..  ....+....      ....               ...+.
T Consensus        70 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (239)
T PF01636_consen   70 PYLLMEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELE  149 (239)
T ss_dssp             EEEEEEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ceEEEEEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHH
Confidence            799999999987766                00   011  000010000      0000               11122


Q ss_pred             H-HHHHHHH-------cCceeeeCCCCceEEc-cCCCEEEccccccchh
Q 042539          136 C-AIEHLHN-------MGIAYRDLKPENILIR-QSGHVTLTDFDLSRNL  175 (412)
Q Consensus       136 ~-aL~yLH~-------~~iiHrDlKp~NiLl~-~~g~vkL~DFGla~~~  175 (412)
                      . .++.+++       ..++|+|+.|.|||++ .+|.+-|+||+.+...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~  198 (239)
T PF01636_consen  150 ERLLQELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWG  198 (239)
T ss_dssp             HHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEE
T ss_pred             HHHHHHHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccceEC
Confidence            2 3334432       3599999999999999 6677789999988654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.24  E-value=9.4e-06  Score=75.49  Aligned_cols=137  Identities=16%  Similarity=0.137  Sum_probs=81.9

Q ss_pred             eeeccCc-eEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeEEEEe
Q 042539           25 ILGKGAM-GTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        25 ~LG~G~f-g~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      .|-.|.+ ..||++....  .    .+.+|......       .....+|+++++.+. +--+.+++++...++..++||
T Consensus         5 ~~~~g~~~~~v~~~~~~~--~----~~~vk~~~~~~-------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~   71 (244)
T cd05150           5 RVTEGQSGATVYRLDGKN--P----GLYLKIAPSGP-------TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLT   71 (244)
T ss_pred             ecCCCCCcCeEEEEcCCC--C----cEEEEecCCCc-------ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEE
Confidence            3444555 8899875432  1    27888764332       123445888888885 444678888887777789999


Q ss_pred             eccCCCCchhHHH-------------------hhC--CCCCCHH------HHHHHHH----------------HHHHHHH
Q 042539          103 PYCPGGDLNVLRY-------------------KQN--DRVFSPS------VIRFYLS----------------EIICAIE  139 (412)
Q Consensus       103 e~~~gg~L~~~~~-------------------~~~--~~~l~~~------~~~~~~~----------------qi~~aL~  139 (412)
                      ++++|..+.....                   ...  ...+...      .....+.                .+...+.
T Consensus        72 e~i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (244)
T cd05150          72 SAVPGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYA  151 (244)
T ss_pred             EeeCCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHH
Confidence            9999987753321                   000  0011100      0000000                0111112


Q ss_pred             HH-------HHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          140 HL-------HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       140 yL-------H~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .|       ....++|+|+.|.|||++.++.+.|+||+.|..
T Consensus       152 ~l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         152 ELEATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             HHHhhCCCcCceEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence            22       123489999999999999977789999998864

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.17  E-value=1.5e-05  Score=81.49  Aligned_cols=146  Identities=22%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh---------------------------HHHHHH------H
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK---------------------------HEAERR------A   70 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~---------------------------~~~~~~------~   70 (412)
                      +.||..+.|.|+.|+-+.     ++.|||||-+...-..-                           .+..+.      +
T Consensus       167 ~piaaASlaQVhrA~L~~-----G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF  241 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKN-----GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDF  241 (538)
T ss_pred             chhhhcchhheEEEEecC-----CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcch
Confidence            679999999999999875     34499998764321110                           011112      2


Q ss_pred             HHHHHHHhhc----CCCc------cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 042539           71 RWEIRVLSRL----SHPF------LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH  140 (412)
Q Consensus        71 ~~Ei~il~~l----~hpn------Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~y  140 (412)
                      .+|++-..++    .|-+      |.++|..+.  ..-.|+||||+|..++++...... .++...+...+.++..  +-
T Consensus       242 ~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~s--t~RVLtME~~~G~~i~Dl~~i~~~-gi~~~~i~~~l~~~~~--~q  316 (538)
T KOG1235|consen  242 TKEAKNAERFRENFKDFSLLTYVLVPKVYWDLS--TKRVLTMEYVDGIKINDLDAIDKR-GISPHDILNKLVEAYL--EQ  316 (538)
T ss_pred             HHHHHhHHHHHHHHHhcccccceeCCeehhhcC--cceEEEEEecCCccCCCHHHHHHc-CCCHHHHHHHHHHHHH--HH
Confidence            2233333322    2333      333333332  245799999999988887666554 3666655444444332  33


Q ss_pred             HHHcCceeeeCCCCceEEcc----CCCEEEccccccchhhchh
Q 042539          141 LHNMGIAYRDLKPENILIRQ----SGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       141 LH~~~iiHrDlKp~NiLl~~----~g~vkL~DFGla~~~~~~~  179 (412)
                      +-..|++|+|=.|.||+++.    ++.+.+-|||+...+....
T Consensus       317 If~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~~  359 (538)
T KOG1235|consen  317 IFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHKT  359 (538)
T ss_pred             HHhcCCccCCCCCCcEEEecCCCCCccEEEEcccccccccHHH
Confidence            44578999999999999994    5679999999998886544

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.16  E-value=3.9e-05  Score=69.00  Aligned_cols=133  Identities=22%  Similarity=0.290  Sum_probs=89.6

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh------------hHHHHHHHHHHHHHHhhcC------CCc
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA------------KHEAERRARWEIRVLSRLS------HPF   84 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~------------~~~~~~~~~~Ei~il~~l~------hpn   84 (412)
                      ...||+|+.-.||..-   .+..    ..|||+.......            .....+...+|+.....+.      +.+
T Consensus         6 ~~~i~~G~~R~cy~HP---~dp~----~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~   78 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHP---DDPN----LCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSH   78 (199)
T ss_pred             CcccccCCCceEEECC---CCCC----eEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccc
Confidence            4679999999999732   2222    6899997765000            0112334445665555555      789


Q ss_pred             cceeeeeEEeCCeEEEEeeccCC------CCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE
Q 042539           85 LPKLLGSLETDEFLAWAVPYCPG------GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI  158 (412)
Q Consensus        85 Iv~l~~~~~~~~~~~lv~e~~~g------g~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl  158 (412)
                      |.++|++.+++.-+-+|+|.+..      -+|..++..   +.+++ .+...   +-.-.+||-+++|+.+||+|.||++
T Consensus        79 i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~---~~~~~-~~~~~---L~~f~~~l~~~~Iv~~dl~~~NIv~  151 (199)
T PF10707_consen   79 IPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKE---GGLTE-ELRQA---LDEFKRYLLDHHIVIRDLNPHNIVV  151 (199)
T ss_pred             cccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHc---CCccH-HHHHH---HHHHHHHHHHcCCeecCCCcccEEE
Confidence            99999999999999999998753      245555532   23665 33333   3344568889999999999999999


Q ss_pred             ccCC----CEEEccc
Q 042539          159 RQSG----HVTLTDF  169 (412)
Q Consensus       159 ~~~g----~vkL~DF  169 (412)
                      ...+    .+.|+|-
T Consensus       152 ~~~~~~~~~lvlIDG  166 (199)
T PF10707_consen  152 QRRDSGEFRLVLIDG  166 (199)
T ss_pred             EecCCCceEEEEEeC
Confidence            7553    4777763

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.11  E-value=1.4e-05  Score=69.40  Aligned_cols=130  Identities=25%  Similarity=0.278  Sum_probs=89.8

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCcc-ceeeeeEEeCCeE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL-PKLLGSLETDEFL   98 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnI-v~l~~~~~~~~~~   98 (412)
                      .+..+.||+|++|.||++.+...      .+|+|+=..+.      -...+..|+++|..+.-.++ .++|.+..+    
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~~~------~~a~Kvrr~ds------~r~~l~kEakiLeil~g~~~~p~vy~yg~~----   87 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWRGG------EVALKVRRRDS------PRRNLEKEAKILEILAGEGVTPEVYFYGED----   87 (201)
T ss_pred             hhhhhhhhcccccEEEEeeccCc------eEEEEEecCCc------chhhHHHHHHHHHHhhhcCCCceEEEechh----
Confidence            35668899999999999988653      38999864432      23455669999999986554 456655544    


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCC-CCceEEccCCCEEEccccccch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLK-PENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlK-p~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.|||+.|-.|......     .+.++    +..++.+---|-..||-|+.|. |..+++...+.+.|+||-.|+.
T Consensus        88 ~i~me~i~G~~L~~~~~~-----~~rk~----l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112          88 FIRMEYIDGRPLGKLEIG-----GDRKH----LLRVLEKAYKLDRLGIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             hhhhhhhcCcchhhhhhc-----ccHHH----HHHHHHHHHHHHHhccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence            355999999888544321     12223    3345555444556799999885 6666666677999999998874

>PLN02876 acyl-CoA dehydrogenase

Probab=98.09  E-value=3.2e-05  Score=84.53  Aligned_cols=150  Identities=16%  Similarity=0.236  Sum_probs=91.0

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCcc--ceeeeeEEeC---
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFL--PKLLGSLETD---   95 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnI--v~l~~~~~~~---   95 (412)
                      -++.|+.|.++.+|++.....+  ....+++|+........   ....+.+|+++|+.+. |.+|  .+++.++.+.   
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~--~~~~~VLR~~p~~~~~~---~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~  116 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGG--SVKRYVLRKKPPGKLLQ---SAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVI  116 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCC--cceeEEEEeCCCCccCc---cHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcC
Confidence            4678899999999998764322  11236777654332111   1234567999999996 6664  7777777654   


Q ss_pred             CeEEEEeeccCCCCchhH-----------------------HHhhCCC--C---------CCHHHHHHHHHH--------
Q 042539           96 EFLAWAVPYCPGGDLNVL-----------------------RYKQNDR--V---------FSPSVIRFYLSE--------  133 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~-----------------------~~~~~~~--~---------l~~~~~~~~~~q--------  133 (412)
                      +..|+||||+.|..+.+.                       ++.....  .         +-..++..|..+        
T Consensus       117 G~~flVME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~vd~~~~gl~~~g~~~~~~~~~l~~w~~~~~~~~~~~  196 (822)
T PLN02876        117 GTAFYIMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSADVDAIGLGKYGRRDNYCKRQVERWAKQYLASTGEG  196 (822)
T ss_pred             CCceEEEEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCCCchhcChhhcCCCCchHHHHHHHHHHHHHHhhccc
Confidence            467899999998653210                       1100000  0         111233322222        


Q ss_pred             -------HHHHHHHHHH-----------cCceeeeCCCCceEEccC-CC-EEEccccccchhh
Q 042539          134 -------IICAIEHLHN-----------MGIAYRDLKPENILIRQS-GH-VTLTDFDLSRNLV  176 (412)
Q Consensus       134 -------i~~aL~yLH~-----------~~iiHrDlKp~NiLl~~~-g~-vkL~DFGla~~~~  176 (412)
                             +...+.+|..           ..+||+|+++.|+|++.. +. +-|.||+++..-+
T Consensus       197 ~~~~~~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~Gd  259 (822)
T PLN02876        197 KPPRNPKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLGN  259 (822)
T ss_pred             CCCCChhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEEeeeccccCC
Confidence                   2233556633           249999999999999853 34 5799999987653

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.94  E-value=1.6e-06  Score=95.41  Aligned_cols=205  Identities=10%  Similarity=-0.065  Sum_probs=138.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh-hHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA-KHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      ++.+++.=-+|.|.+++--..+.+.     . -+-+|+.+...+.. .+...+....|..-++...|++++..+.-... 
T Consensus      1228 ~e~~EV~l~i~~~~~~R~k~Lr~ki-----d-~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~h~~~~~~p~rI~ps 1301 (2724)
T KOG1826|consen 1228 MEHSEVNLGISNHFHFRNKWLRSKI-----D-WFKFSIYKEYDFENLSEPLKEMLLSERDELREAKHYLTEVDPLRIPPS 1301 (2724)
T ss_pred             hhhhheeeecccceeeccchHhhhh-----c-eeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhhceeeecccccCCCC
Confidence            3455555556666555432111111     1 15667664443321 22234445556666677789998877765543 


Q ss_pred             -CCeEEEEeeccCCCCchhHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHHc-----CceeeeCCCCceEEccCCCEEE
Q 042539           95 -DEFLAWAVPYCPGGDLNVLRYKQNDR--VFSPSVIRFYLSEIICAIEHLHNM-----GIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        95 -~~~~~lv~e~~~gg~L~~~~~~~~~~--~l~~~~~~~~~~qi~~aL~yLH~~-----~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                       +...|.+++||.+|.+...+.+....  .+.+.-+.....+.+.+..-+|+.     --+|+++|+-|-+|..+-.+|+
T Consensus      1302 ~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~ 1381 (2724)
T KOG1826|consen 1302 ESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKL 1381 (2724)
T ss_pred             CChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCcccc
Confidence             34679999999999998776653321  233444444444447778887764     2789999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      .++|+.+.....                                                               .....
T Consensus      1382 gk~gLdKIknp~---------------------------------------------------------------~sf~G 1398 (2724)
T KOG1826|consen 1382 GKGGLDKIKNPV---------------------------------------------------------------LSFFG 1398 (2724)
T ss_pred             cccccccccCch---------------------------------------------------------------Hhhhh
Confidence            999999832211                                                               11123


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCC
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG  290 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~  290 (412)
                      ..++++.|+++++.....++.++|+|..||-+|+..-|..+|..
T Consensus      1399 l~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~fi~ 1442 (2724)
T KOG1826|consen 1399 LELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYFIF 1442 (2724)
T ss_pred             hhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHH
Confidence            56788999999999998898889999999999999999888743

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.84  E-value=7.7e-05  Score=69.06  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=45.1

Q ss_pred             eeeeeccCce-EEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC---ccceeeeeEEeC---
Q 042539           23 LKILGKGAMG-TVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP---FLPKLLGSLETD---   95 (412)
Q Consensus        23 ~~~LG~G~fg-~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp---nIv~l~~~~~~~---   95 (412)
                      +..|+.|+.. .||++.     ..    +.+|+.....      ....+.+|.+++..+...   -+..+++.....   
T Consensus         2 ~~~~~~gG~~n~vy~~~-----~~----~VlR~~~~~~------~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~   66 (235)
T cd05155           2 IEPVDSGGTDNATFRLG-----DD----MSVRLPSAAG------YAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGY   66 (235)
T ss_pred             ceeccCCCcccceEEcC-----Cc----eEEEcCCccc------hHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCC
Confidence            4567777766 599752     11    6788754321      123566699999888631   344555444332   


Q ss_pred             CeEEEEeeccCCCCch
Q 042539           96 EFLAWAVPYCPGGDLN  111 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~  111 (412)
                      ...+++|++++|.++.
T Consensus        67 ~~~~~l~~~i~G~~l~   82 (235)
T cd05155          67 PWPWSVYRWLEGETAT   82 (235)
T ss_pred             CcceEEEEeecCCCCC
Confidence            2358899999997763

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.67  E-value=0.00057  Score=62.99  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=47.1

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeEEEE
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWA  101 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~~lv  101 (412)
                      ++.|..|-...||++.....   ....|.+|+.......     .....+|+.+++.+. +.-+++++..+..    .++
T Consensus         3 i~~l~gG~tN~~~~v~~~~~---~~~~~vlR~~~~~~~~-----~~d~~~E~~~~~~l~~~gl~P~v~~~~~~----~~l   70 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKED---NQDAVLVRVYGNKTEL-----IIDRERELRIHKLLSKHGLAPKLYATFQN----GLI   70 (235)
T ss_pred             EEEcCCcccceEEEEEcCCC---CCCeEEEEEccCCccc-----eecHHHHHHHHHHHHhCCCCCeEEEEeCC----cEE
Confidence            56788888899999864320   1123889976543211     011224888888885 3345566554432    379


Q ss_pred             eeccCCCCc
Q 042539          102 VPYCPGGDL  110 (412)
Q Consensus       102 ~e~~~gg~L  110 (412)
                      |||++|..+
T Consensus        71 ~e~i~G~~l   79 (235)
T cd05157          71 YEFIPGRTL   79 (235)
T ss_pred             EEeeCCCcC
Confidence            999999766

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.66  E-value=0.0002  Score=64.01  Aligned_cols=99  Identities=22%  Similarity=0.176  Sum_probs=76.7

Q ss_pred             HHHHHhhcCC-CccceeeeeEEeCCeEEEEeeccCCCCchhHH-HhhCCCCCCHHHHHHHHHHHHHHHHHHHH---cCce
Q 042539           73 EIRVLSRLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLR-YKQNDRVFSPSVIRFYLSEIICAIEHLHN---MGIA  147 (412)
Q Consensus        73 Ei~il~~l~h-pnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~-~~~~~~~l~~~~~~~~~~qi~~aL~yLH~---~~ii  147 (412)
                      |.-+++.+++ +++++++|++-+    ++|+||...+++.... ....-..-+......++.+++..+++|+.   ..+.
T Consensus         9 E~lll~~l~~~~~~pk~lG~CG~----~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~   84 (188)
T PF12260_consen    9 EPLLLQLLQGSEPFPKLLGSCGR----FYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFY   84 (188)
T ss_pred             HHHHHHHcCCCCCCCCeeeECCC----EEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence            7778888875 699999998843    6799999877653210 00011125778889999999999999987   3477


Q ss_pred             eeeCCCCceEEccCCCEEEccccccchh
Q 042539          148 YRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       148 HrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      -.|++++||-++++|.+|++|...+...
T Consensus        85 lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   85 LCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             EeecchHHeEEeCCCcEEEEechhcchh
Confidence            7999999999999999999999877554

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.57  E-value=0.00067  Score=64.91  Aligned_cols=142  Identities=16%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC--ccceeeee-----
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP--FLPKLLGS-----   91 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp--nIv~l~~~-----   91 (412)
                      +..-++.|..|....+|++....  .    .+++|+....   .    ...+..|++++..+.+.  .+.+++..     
T Consensus        15 ~~~~i~~i~~G~~n~~y~v~~~~--~----~~vLr~~~~~---~----~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~   81 (296)
T cd05153          15 ELLSFEGISAGIENTNYFVTTDS--G----RYVLTLFEKV---S----AEELPFFLALLDHLAERGLPVPRPIADRDGEY   81 (296)
T ss_pred             chhheecccCccccceEEEEeCC--C----cEEEEEcCCC---C----hHhccHHHHHHHHHHHCCCCCCccccCCCCcE
Confidence            33446788888889999886432  1    2899987531   1    12344477888887522  25555442     


Q ss_pred             -EEeCCeEEEEeeccCCCCchh----H----------HHhhCCCCCCH--------HHH------------HHHHHHHHH
Q 042539           92 -LETDEFLAWAVPYCPGGDLNV----L----------RYKQNDRVFSP--------SVI------------RFYLSEIIC  136 (412)
Q Consensus        92 -~~~~~~~~lv~e~~~gg~L~~----~----------~~~~~~~~l~~--------~~~------------~~~~~qi~~  136 (412)
                       ...++..++|+++++|..+..    .          ++.... .+..        ...            ......+..
T Consensus        82 ~~~~~~~~~~l~~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  160 (296)
T cd05153          82 LSELAGKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQ-SFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLAD  160 (296)
T ss_pred             eeeeCCceEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhc-cCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHH
Confidence             234456789999999977532    0          010000 0000        000            001112233


Q ss_pred             HHHHHHH-------cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          137 AIEHLHN-------MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       137 aL~yLH~-------~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.++.+       .++||+|+.|.|||++.++.+.|+||+.+..
T Consensus       161 ~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         161 ELARQDAFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             HHHHHHhhhhhcCCCcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            4445443       4799999999999999877778999998863

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.53  E-value=0.00082  Score=64.82  Aligned_cols=146  Identities=18%  Similarity=0.236  Sum_probs=84.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC--CccceeeeeE-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH--PFLPKLLGSL-   92 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h--pnIv~l~~~~-   92 (412)
                      .++....++.++.|.-..||++... .+     .+.+|+.....  .    ...+..|++++..|..  -.|.+++..- 
T Consensus        20 ~~~~~~~i~~~~~G~~n~~y~v~t~-~~-----~~vLK~~~~~~--~----~~~i~~e~~~l~~L~~~g~pvp~~i~t~~   87 (307)
T TIGR00938        20 DLGELLSLKGIAEGVENSNYLLTTD-VG-----RYILTLYEKRV--K----AEELPFFLALTTHLAARGLPVPKPVKSRD   87 (307)
T ss_pred             CCCCceeccccCCccccceEEEEeC-CC-----cEEEEEecCCC--C----HHHHHHHHHHHHHHHHCCCCCCccccCCC
Confidence            3344556788888888999988642 11     27889774421  1    1122346677777742  1244444421 


Q ss_pred             -----EeCCeEEEEeeccCCCCchhH--------------HHhhCCCCCC---------HH----HHH----------HH
Q 042539           93 -----ETDEFLAWAVPYCPGGDLNVL--------------RYKQNDRVFS---------PS----VIR----------FY  130 (412)
Q Consensus        93 -----~~~~~~~lv~e~~~gg~L~~~--------------~~~~~~~~l~---------~~----~~~----------~~  130 (412)
                           ..++..+++++|++|..+...              ++.... .++         ..    ...          ..
T Consensus        88 g~~~~~~~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~  166 (307)
T TIGR00938        88 GRQLSTLAGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGA-HFPENRKNSLRLEAWHILAEKCFEAAPQLEAHM  166 (307)
T ss_pred             CCeehhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhc-cCCCCCCCCCChHHHHHHHHhhhhcccccCHHH
Confidence                 234567899999998654210              111000 010         00    000          01


Q ss_pred             HHHHHHHHHHHHH-------cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          131 LSEIICAIEHLHN-------MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       131 ~~qi~~aL~yLH~-------~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ...+...++++..       .++||+|+.+.||+++.++.+.|+||+.+..
T Consensus       167 ~~~l~~~~~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~  217 (307)
T TIGR00938       167 GAELDKELDYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFACT  217 (307)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeecccccC
Confidence            1123334555542       5899999999999999888778999998853

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.48  E-value=0.0014  Score=65.34  Aligned_cols=80  Identities=19%  Similarity=0.215  Sum_probs=52.8

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh--hh--HHHHHHHHHHHHHHhhcC---CCccceeeeeEEe
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AK--HEAERRARWEIRVLSRLS---HPFLPKLLGSLET   94 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~--~~--~~~~~~~~~Ei~il~~l~---hpnIv~l~~~~~~   94 (412)
                      -.+.||.|.+..||++.....+    +.|.||.-.. ...  ..  .....+...|.+.|+.+.   -.++++++.+  +
T Consensus        30 ~~~elggGn~N~VyrV~~~~g~----~svIVKqa~p-~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D  102 (401)
T PRK09550         30 TAREIGDGNLNLVFRVSDTEGG----KSVIVKQALP-YVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--D  102 (401)
T ss_pred             eeeEcCCCceEEEEEEEeCCCC----eEEEEEecCc-ccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--C
Confidence            4578999999999999875321    2389997431 110  00  112345566888888874   2467777777  3


Q ss_pred             CCeEEEEeeccCCC
Q 042539           95 DEFLAWAVPYCPGG  108 (412)
Q Consensus        95 ~~~~~lv~e~~~gg  108 (412)
                      .+..++|||++.+.
T Consensus       103 ~~~~~lVME~L~~~  116 (401)
T PRK09550        103 EELAVTVMEDLSDH  116 (401)
T ss_pred             CCCCEEEEecCCCc
Confidence            35578999999764

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.46  E-value=0.00022  Score=67.87  Aligned_cols=136  Identities=19%  Similarity=0.278  Sum_probs=93.1

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh-----hhhHH-------------HHHHHHHHHHHHhhcC
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL-----HAKHE-------------AERRARWEIRVLSRLS   81 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~-----~~~~~-------------~~~~~~~Ei~il~~l~   81 (412)
                      +-+..+||-|--+-||++-+...     .+.++|.=+....     ..+.+             ....+.+|...|+.|.
T Consensus        94 ~svGnqIGVGKESDIY~v~d~~G-----~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~  168 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADEEG-----NPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALY  168 (465)
T ss_pred             hhhccccccccccceEEEecCCC-----CchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHH
Confidence            34678899999999999877532     2367774332211     11110             1123566888899885


Q ss_pred             -CCc-cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc
Q 042539           82 -HPF-LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR  159 (412)
Q Consensus        82 -hpn-Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~  159 (412)
                       |-+ |.+.+    +.+..++|||++.|-.|....+..        .+..+...++.-+.-|-.+|+||+|..-=||+++
T Consensus       169 e~gfpVPkpi----D~~RH~Vvmelv~g~Pl~~v~~v~--------d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~  236 (465)
T KOG2268|consen  169 ERGFPVPKPI----DHNRHCVVMELVDGYPLRQVRHVE--------DPPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVK  236 (465)
T ss_pred             HcCCCCCCcc----cccceeeHHHhhcccceeeeeecC--------ChHHHHHHHHHHHHHHHHcCceecccchheeEEe
Confidence             544 33333    345679999999998886543222        2234455566667778889999999999999999


Q ss_pred             cCCCEEEcccccc
Q 042539          160 QSGHVTLTDFDLS  172 (412)
Q Consensus       160 ~~g~vkL~DFGla  172 (412)
                      .+++++++||--.
T Consensus       237 dd~~i~vIDFPQm  249 (465)
T KOG2268|consen  237 DDDKIVVIDFPQM  249 (465)
T ss_pred             cCCCEEEeechHh
Confidence            9999999999644

>PRK10593 hypothetical protein; Provisional

Probab=97.38  E-value=0.0027  Score=61.05  Aligned_cols=80  Identities=13%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-C--CccceeeeeEEeC
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H--PFLPKLLGSLETD   95 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-h--pnIv~l~~~~~~~   95 (412)
                      ...-.+.||.|..+.||.......      .+.+|+.+...      ....+.+|+..|+.|. +  -.|.++++++.++
T Consensus        15 ~~~~~~~i~~G~~~~vy~~~~~~~------~~~~k~~~~~~------~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~   82 (297)
T PRK10593         15 KLSRVECISEQPYAALWALYDSQG------NPMPLMARSFS------TPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHE   82 (297)
T ss_pred             hhheeeecCCccceeEEEEEcCCC------CEEEEEecccc------cchHHHHHHHHHHHHccCCCCCcCcEEEEeccC
Confidence            344567899999999998754221      16778743211      1134556888998885 2  3678888877543


Q ss_pred             ---CeEEEEeeccCCCCc
Q 042539           96 ---EFLAWAVPYCPGGDL  110 (412)
Q Consensus        96 ---~~~~lv~e~~~gg~L  110 (412)
                         +.-+||||+++|+.+
T Consensus        83 ~~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         83 QSPGPDVLLLERLRGVSV  100 (297)
T ss_pred             CcCCCeEEEEeccCCEec
Confidence               568999999998765

>PRK05231 homoserine kinase; Provisional

Probab=97.31  E-value=0.0038  Score=60.42  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=26.4

Q ss_pred             cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .|+||+|+.|.|||++.+...-|+||+.+..
T Consensus       187 ~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             cccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            3899999999999998655558999998863

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.26  E-value=0.0033  Score=58.90  Aligned_cols=136  Identities=16%  Similarity=0.187  Sum_probs=75.7

Q ss_pred             eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC-ccceeeeeEEeCCeEEEEee
Q 042539           25 ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP-FLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp-nIv~l~~~~~~~~~~~lv~e  103 (412)
                      .+..|-.+.+|++...      +..+++|+........    .....+|..+++.+..- -..+++....    -++|||
T Consensus         3 ~~~~G~tn~~y~~~~~------~~~~vlR~~~~~~~~~----~~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e   68 (256)
T TIGR02721         3 TLSGGLTNRSWRIEHP------GISFVWRPQSPVCKAL----GVDRQREYQILQALSALGLAPKPILVNE----HWLLVE   68 (256)
T ss_pred             cCCCcCcCCeEEEEeC------CccEEEeeCCcccccc----cCcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEE
Confidence            3566888899987622      2238888764332110    01124488888888632 2344544432    268999


Q ss_pred             ccCCCCchhH-----------------HHhhC--CCCCCH-HHHHHHHHHH---------HHHHHHHHH--------cCc
Q 042539          104 YCPGGDLNVL-----------------RYKQN--DRVFSP-SVIRFYLSEI---------ICAIEHLHN--------MGI  146 (412)
Q Consensus       104 ~~~gg~L~~~-----------------~~~~~--~~~l~~-~~~~~~~~qi---------~~aL~yLH~--------~~i  146 (412)
                      |++|..+...                 ++...  ...++. ..+..+..++         ...+..+-+        ..+
T Consensus        69 ~i~G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  148 (256)
T TIGR02721        69 WLEGEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAP  148 (256)
T ss_pred             eccCcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCee
Confidence            9999765321                 11110  011111 1222222222         111222221        258


Q ss_pred             eeeeCCCCceEEccCCCEEEccccccchh
Q 042539          147 AYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       147 iHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +|+|+.|.||+++.++ +.|+||..|..-
T Consensus       149 ~H~Dl~~~Nil~~~~~-~~lIDwE~a~~g  176 (256)
T TIGR02721       149 LHMDVHAYNLVVTPQG-LKLIDWEYASDG  176 (256)
T ss_pred             ecCCCCcCcEEEeCCC-CEEEeccccCcC
Confidence            9999999999999877 789999988643

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.21  E-value=0.0023  Score=61.45  Aligned_cols=80  Identities=21%  Similarity=0.239  Sum_probs=47.8

Q ss_pred             eeeeeccCceEEEEEEEcCC--CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC-CccceeeeeEEeCCeEE
Q 042539           23 LKILGKGAMGTVFLVHDRAA--DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-PFLPKLLGSLETDEFLA   99 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~--~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h-pnIv~l~~~~~~~~~~~   99 (412)
                      ++.|..|--..||++.....  ....+..|++|+......     ......+|..+++.+.. --..++++++..    .
T Consensus         3 i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~-----~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~   73 (302)
T cd05156           3 VSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVE-----LLIDRERELVVFARLSERNLGPKLYGIFPN----G   73 (302)
T ss_pred             EEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCc-----ceechHHHHHHHHHHHhCCCCCceEEEeCC----C
Confidence            45677777789998864321  011234488998754321     11123348888888852 234566666542    3


Q ss_pred             EEeeccCCCCch
Q 042539          100 WAVPYCPGGDLN  111 (412)
Q Consensus       100 lv~e~~~gg~L~  111 (412)
                      +|++|++|..+.
T Consensus        74 ~v~e~i~G~~l~   85 (302)
T cd05156          74 RIEEFIPSRTLT   85 (302)
T ss_pred             chhheeCCCcCC
Confidence            589999987664

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PLN02236 choline kinase

Probab=96.98  E-value=0.0063  Score=59.75  Aligned_cols=147  Identities=19%  Similarity=0.224  Sum_probs=83.9

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFL   98 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~   98 (412)
                      ..-++.|-.|-...+|++............|.+|+.....    .....+ .+|..+++.+. +.--.++++.+..+   
T Consensus        38 ~~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t----~~~idR-~~E~~~~~~l~~~gl~P~~~~~~~~g---  109 (344)
T PLN02236         38 ALQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGV----ELFFDR-DDEIRTFECMSRHGQGPRLLGRFPNG---  109 (344)
T ss_pred             cEEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCC----Ceeech-HHHHHHHHHHHHcCCCCceEEEECCc---
Confidence            3445566568889999987543222233458899875432    112222 34888888886 33345666766443   


Q ss_pred             EEEeeccCCCCchhH-----------------HHhhC-C--C-CCCHHHHHHHHHHH-----------------HHHHHH
Q 042539           99 AWAVPYCPGGDLNVL-----------------RYKQN-D--R-VFSPSVIRFYLSEI-----------------ICAIEH  140 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~-----------------~~~~~-~--~-~l~~~~~~~~~~qi-----------------~~aL~y  140 (412)
                       .|++|++|.++...                 ++... .  . ......+..+..++                 ...+..
T Consensus       110 -~v~efi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  188 (344)
T PLN02236        110 -RVEEFIHARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINL  188 (344)
T ss_pred             -eEEEeeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHH
Confidence             57999988776421                 00000 0  0 01112233332221                 111112


Q ss_pred             H----H----HcCceeeeCCCCceEEcc-CCCEEEccccccchh
Q 042539          141 L----H----NMGIAYRDLKPENILIRQ-SGHVTLTDFDLSRNL  175 (412)
Q Consensus       141 L----H----~~~iiHrDlKp~NiLl~~-~g~vkL~DFGla~~~  175 (412)
                      |    .    ...++|+|+++.|||++. ++.+.|+||..|...
T Consensus       189 L~~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~  232 (344)
T PLN02236        189 LEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASYN  232 (344)
T ss_pred             HHHHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhcccc
Confidence            2    1    235899999999999986 468999999988643

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=96.95  E-value=0.016  Score=55.69  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=26.3

Q ss_pred             cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .++||+|+.+.||+++. +.+.|+||+.+..
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~~  216 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCTI  216 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECccccc
Confidence            47899999999999987 7789999997654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.94  E-value=0.0087  Score=56.86  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=25.6

Q ss_pred             CceeeeCCCCceEEccCCC-EEEccccccch
Q 042539          145 GIAYRDLKPENILIRQSGH-VTLTDFDLSRN  174 (412)
Q Consensus       145 ~iiHrDlKp~NiLl~~~g~-vkL~DFGla~~  174 (412)
                      .++|+|+.|.|||++.++. .-|+||+.+..
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            4899999999999997565 46999998864

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.83  E-value=0.012  Score=57.24  Aligned_cols=143  Identities=21%  Similarity=0.205  Sum_probs=94.4

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh----------------------HHHHHHHHHHHHHHhhc
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK----------------------HEAERRARWEIRVLSRL   80 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~----------------------~~~~~~~~~Ei~il~~l   80 (412)
                      -..|..|--+-||.|...     .+..+|||+++.+.+.-+                      ..+..-+..|++-|++|
T Consensus       149 nGCiSTGKEANVYHat~~-----dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl  223 (520)
T KOG2270|consen  149 NGCISTGKEANVYHATEE-----DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRL  223 (520)
T ss_pred             ccccccCccceeEeeecC-----CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHH
Confidence            356778888999987543     233499999876543211                      11222345577778888


Q ss_pred             CCCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHH-HHcCceeeeCCCCceEEc
Q 042539           81 SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL-HNMGIAYRDLKPENILIR  159 (412)
Q Consensus        81 ~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yL-H~~~iiHrDlKp~NiLl~  159 (412)
                      ..-.|..---...  ....|||+|+.+ +=+-. -.-....++...++.+-.|++.-+.-| |..++||.||.-=|+|+ 
T Consensus       224 ~~aGIP~PePIlL--k~hVLVM~FlGr-dgw~a-PkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~Ly-  298 (520)
T KOG2270|consen  224 NNAGIPCPEPILL--KNHVLVMEFLGR-DGWAA-PKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLY-  298 (520)
T ss_pred             HhcCCCCCCceee--ecceEeeeeccC-CCCcC-cccccccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheE-
Confidence            6443321111111  234689999953 32211 111233478888999999998888887 56799999999999998 


Q ss_pred             cCCCEEEccccccchh
Q 042539          160 QSGHVTLTDFDLSRNL  175 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~  175 (412)
                      .+|.+.|+|-+-+...
T Consensus       299 hdG~lyiIDVSQSVE~  314 (520)
T KOG2270|consen  299 HDGKLYIIDVSQSVEH  314 (520)
T ss_pred             ECCEEEEEEccccccC
Confidence            7789999999877654

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.78  E-value=0.0033  Score=63.37  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=59.0

Q ss_pred             hhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-------------CCCCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          268 AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-------------FVGQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       268 ~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ++||||+|.|+.++.-|...+......+..+.+..-...             ....+..+.++..+|+-..|..|+    
T Consensus       111 KsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~----  186 (725)
T KOG1093|consen  111 KSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRP----  186 (725)
T ss_pred             chhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCcccccccc----
Confidence            999999999999999999988877666665555432111             012345677899999999999999    


Q ss_pred             ChhhhhcCCCCCCC
Q 042539          335 GACEIKEHVFFKGV  348 (412)
Q Consensus       335 ~~~e~l~h~ff~~~  348 (412)
                      ...++.+++-|.++
T Consensus       187 l~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  187 LPMELSKRCSFTEV  200 (725)
T ss_pred             chhHHhcCccHHHH
Confidence            57888888888765

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.70  E-value=0.012  Score=57.63  Aligned_cols=78  Identities=22%  Similarity=0.217  Sum_probs=46.7

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh---hhHHHHHHHHHHHHHHhhcC--CC-ccceeeeeEEeCCe
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH---AKHEAERRARWEIRVLSRLS--HP-FLPKLLGSLETDEF   97 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~---~~~~~~~~~~~Ei~il~~l~--hp-nIv~l~~~~~~~~~   97 (412)
                      +.||.|....||++.+...+    ..|+||.-..-.-.   .-.-...+...|..+|+...  .| .++++|.+  +.+.
T Consensus         1 ~EigdGnlN~VfrV~~~~g~----~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~   74 (370)
T TIGR01767         1 QEVGDGNLNLVFHVYDQEGD----RAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEM   74 (370)
T ss_pred             CcCCCCceEEEEEEEcCCCC----eeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--cccc
Confidence            36899999999999864321    23898865311100   00123345556888988875  35 45555433  3445


Q ss_pred             EEEEeeccCC
Q 042539           98 LAWAVPYCPG  107 (412)
Q Consensus        98 ~~lv~e~~~g  107 (412)
                      ..+|||++..
T Consensus        75 ~~~vMEdL~~   84 (370)
T TIGR01767        75 AVTVMEDLSH   84 (370)
T ss_pred             ceehHhhCcc
Confidence            5689999854

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.57  E-value=0.022  Score=55.55  Aligned_cols=148  Identities=16%  Similarity=0.203  Sum_probs=80.6

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc-cceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF-LPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~l~~~~~~   94 (412)
                      ..+++.+... ..|=...+|++....... ....|.+|+......    ....+ .+|..+++.+..-+ -.++++++..
T Consensus        13 ~~~~i~i~~l-~gGlTN~~~~v~~~~~~~-~~~~~v~Ri~g~~t~----~~IdR-~~E~~il~~l~~~gl~P~~l~~~~~   85 (330)
T PLN02421         13 DDSDFSVERI-SGGITNLLLKVSVKEENG-NEVSVTVRLFGPNTD----YVIDR-ERELQAIKYLSAAGFGAKLLGVFGN   85 (330)
T ss_pred             CcCceEEEEe-CCcccceEEEEEecCCCC-CCceEEEEEecCCcC----eEech-HHHHHHHHHHHhcCCCCceeEEeCC
Confidence            3345555444 447778899886543211 122488898744321    11111 23888888886433 3566766643


Q ss_pred             CCeEEEEeeccCCCCchhH-------HHh--------hC-C----CCCC-HHHHHHHHHHH-------------------
Q 042539           95 DEFLAWAVPYCPGGDLNVL-------RYK--------QN-D----RVFS-PSVIRFYLSEI-------------------  134 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~-------~~~--------~~-~----~~l~-~~~~~~~~~qi-------------------  134 (412)
                      +    +|.+|++|..|...       +..        +. .    ..++ ...+..+..++                   
T Consensus        86 G----~i~~fi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~  161 (330)
T PLN02421         86 G----MIQSFINARTLTPSDMRKPKVAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISF  161 (330)
T ss_pred             c----EeehhhcCCCCChHHCCCHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCH
Confidence            2    48999988765321       000        11 0    0011 12222232222                   


Q ss_pred             ---HHHHHHHH----Hc----CceeeeCCCCceEEcc-CCCEEEccccccch
Q 042539          135 ---ICAIEHLH----NM----GIAYRDLKPENILIRQ-SGHVTLTDFDLSRN  174 (412)
Q Consensus       135 ---~~aL~yLH----~~----~iiHrDlKp~NiLl~~-~g~vkL~DFGla~~  174 (412)
                         ..-+..+.    ..    -.+|.|+.+.|||++. ++.++++||..|..
T Consensus       162 ~~l~~~~~~l~~~~~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        162 EELRDEIVELKEITDSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             HHHHHHHHHHHHHhccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence               11122222    11    2799999999999975 47899999998864

>PLN02756 S-methyl-5-thioribose kinase

Probab=96.19  E-value=0.058  Score=53.84  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH---HHHHHHHHHHHHHhhcC--C-CccceeeeeEEeC
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH---EAERRARWEIRVLSRLS--H-PFLPKLLGSLETD   95 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~---~~~~~~~~Ei~il~~l~--h-pnIv~l~~~~~~~   95 (412)
                      ..+.||.|.-..||++.+..  .    .|.||.-.........   -...+...|+..|+.+.  . .++.++|.+..  
T Consensus        36 ~~~eiggGn~N~VyrV~~~~--~----svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--  107 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSSS--G----SFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--  107 (418)
T ss_pred             eEEEcCCCceeeEEEEEcCC--c----cEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--
Confidence            57889999999999988632  1    2888865411110000   12344455778887775  2 47888888777  


Q ss_pred             CeEEEEeeccCC
Q 042539           96 EFLAWAVPYCPG  107 (412)
Q Consensus        96 ~~~~lv~e~~~g  107 (412)
                      +.-+++||++.+
T Consensus       108 d~~vlvME~L~~  119 (418)
T PLN02756        108 TMALIGMRYLEP  119 (418)
T ss_pred             CCCEEEEeecCC
Confidence            345778999976

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=95.94  E-value=0.028  Score=51.05  Aligned_cols=84  Identities=18%  Similarity=0.145  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH--cCc
Q 042539           69 RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN--MGI  146 (412)
Q Consensus        69 ~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~--~~i  146 (412)
                      .+..+.++++++.  .|++|..-  +.-.+-+++|+|.-...           .   ..-++. -=+.+|.-.|+  .+.
T Consensus       104 ~y~nky~v~Armh--GilrL~ND--n~~~yGvIlE~Cy~~~i-----------~---~~N~i~-agi~~L~~fH~~~~~~  164 (308)
T PF07387_consen  104 LYFNKYRVFARMH--GILRLKND--NNYKYGVILERCYKIKI-----------N---FSNFIT-AGIKDLMDFHSENQHC  164 (308)
T ss_pred             hhhhhhhHHHHhh--heeEeecC--CCceeEEEEeeccCccc-----------c---hhHHHH-HhHHHHHHhhccCCCe
Confidence            3456788888875  57777632  33357788999943211           1   111111 12466778884  369


Q ss_pred             eeeeCCCCceEEccCCCEEEccccc
Q 042539          147 AYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus       147 iHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +|+|..|+|||-|+.|.+||.|=+.
T Consensus       165 lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  165 LHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             ecCCCChhheeecCCCCEEecChhh
Confidence            9999999999999999999999763

The function of this family is unknown.

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=95.74  E-value=0.027  Score=54.83  Aligned_cols=71  Identities=27%  Similarity=0.335  Sum_probs=54.1

Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEccccccch
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ..+|++|++- |+.+... ..     -..+++..++.+.+..+.-+..+ ..=|||+.-.||||+ +|+|.|+||-+|+.
T Consensus       299 ~y~yl~~kdh-gt~is~i-k~-----~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         299 LYLYLHFKDH-GTPISII-KA-----DRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             eEEEEEEecC-Cceeeee-ec-----ccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceeee-cCceEEEEeeeeec
Confidence            4677888875 6666422 11     34567777888887777766654 689999999999999 99999999999984

>PTZ00384 choline kinase; Provisional

Probab=95.72  E-value=0.042  Score=54.67  Aligned_cols=85  Identities=13%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCC--CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEE
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAAD--PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLE   93 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~--~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~   93 (412)
                      .+++. ++.|..|-...+|++......  ....+.|.+.+...    .......+ .+|+++++.+. +..-.++++.|.
T Consensus        50 ~~~i~-i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~----~~~l~IdR-~~E~~i~~~Ls~~glgP~l~~~f~  123 (383)
T PTZ00384         50 PEFIE-IKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSST----YNSLVIDN-DLQYNIAKLLGDNNFGPKIIGRFG  123 (383)
T ss_pred             cccEE-EEEeCCcccceEEEEEecCCCCCccccceEEEEeccC----CCceEecc-HHHHHHHHHHHhCCCCCeEEEecC
Confidence            33444 445555888999998653321  11111133333211    11111111 34899999997 455677777776


Q ss_pred             eCCeEEEEeeccCCCCch
Q 042539           94 TDEFLAWAVPYCPGGDLN  111 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~  111 (412)
                      .    +++.||++|..|.
T Consensus       124 ~----g~l~efIeGr~l~  137 (383)
T PTZ00384        124 D----FTIQEWVEGNTMG  137 (383)
T ss_pred             C----EEEEEEeccccCC
Confidence            4    5999999998764

>PRK12396 5-methylribose kinase; Reviewed

Probab=95.61  E-value=0.08  Score=52.60  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh---hHHHHHHHHHHHHHHhhcC--CC-ccceeeeeEEeC
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA---KHEAERRARWEIRVLSRLS--HP-FLPKLLGSLETD   95 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~---~~~~~~~~~~Ei~il~~l~--hp-nIv~l~~~~~~~   95 (412)
                      .++.||.|.-..||++.+...+.    .|+||.-..- +..   -.-...|...|..+|+...  .| +++++|.+  +.
T Consensus        33 ~~~eigdGnlN~VfrV~~~~~~~----svIVKQAlp~-vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~--D~  105 (409)
T PRK12396         33 QCKEIGDGNLNYVFRVWDEQKNI----SVIVKQAGDT-ARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLF--DS  105 (409)
T ss_pred             eeeEcCCCceEEEEEEeeCCCCc----eEEEEeccHh-hccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEE--Cc
Confidence            37889999999999998742122    2888864211 111   0123456666999999885  45 45556543  34


Q ss_pred             CeEEEEeeccCC
Q 042539           96 EFLAWAVPYCPG  107 (412)
Q Consensus        96 ~~~~lv~e~~~g  107 (412)
                      +...+|||++..
T Consensus       106 e~~~~vMEdL~~  117 (409)
T PRK12396        106 VMNCCVMEDLSD  117 (409)
T ss_pred             HHhhHHHHhCcc
Confidence            455688888753

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=94.84  E-value=0.31  Score=47.09  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             CceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539          145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus       145 ~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      .++|+|+.+.|++++.++-+=+.||+++..-+..
T Consensus       199 ~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~  232 (321)
T COG3173         199 VLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPL  232 (321)
T ss_pred             eeeeCCcccCCEEEeCCCeeEEEeccccccCCcH
Confidence            4899999999999999999999999999765443

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=94.74  E-value=0.0073  Score=60.70  Aligned_cols=75  Identities=21%  Similarity=0.428  Sum_probs=60.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..-+++++.....+|.|+||+|+.+..+..+    ..+|||.|...   +......+..+|..-+..+.|++|+++...|
T Consensus        44 ~sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~----~~~avkritlk---n~e~s~~rvl~~~~s~a~feh~g~~~~~ha~  116 (516)
T KOG1033|consen   44 TSREANDFEPGQCLGRGGFGVVFSAQNKADE----NKYAVKRITLK---NREESRSRVLREVSSLAEFEHPGIKRYFHAW  116 (516)
T ss_pred             hhhhhccccccccccccCccccCCccccccc----hhhHHHHhccc---chhhhhhhhhccccchhhhcccchhhheece
Confidence            4556789999999999999999987766543    34899988544   3456677888899999999999999998887


Q ss_pred             Ee
Q 042539           93 ET   94 (412)
Q Consensus        93 ~~   94 (412)
                      ..
T Consensus       117 ~~  118 (516)
T KOG1033|consen  117 YE  118 (516)
T ss_pred             ec
Confidence            54

>PRK06148 hypothetical protein; Provisional

Probab=94.39  E-value=0.73  Score=51.85  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=26.5

Q ss_pred             cCceeeeCCCCceEEccCC--CEE-Eccccccch
Q 042539          144 MGIAYRDLKPENILIRQSG--HVT-LTDFDLSRN  174 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~g--~vk-L~DFGla~~  174 (412)
                      .++||.|+.+.|||++.++  .+. |+|||-+..
T Consensus       203 ~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~  236 (1013)
T PRK06148        203 AQVIHNDANDYNILVDADDGERISGLIDFGDAVH  236 (1013)
T ss_pred             cceECCCCCcccEEEcCCCCcceEEEEECccccc
Confidence            4799999999999999875  565 999998764

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=94.10  E-value=0.87  Score=43.50  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC---CCccceeeeeEEeCC
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---HPFLPKLLGSLETDE   96 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~---hpnIv~l~~~~~~~~   96 (412)
                      .+-.+.++.|.-..+|.+..      .+..+-||+-....       ...+..|+.-|+.|.   .-.+++.+.+...++
T Consensus        19 i~~~~~v~GG~i~~a~~~~~------~~~~~FvK~~~~~~-------~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~   85 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLDT------DGGSYFVKVNSESG-------RDMFEGEAEGLKALAEANPIRVPKVIAWGEYDD   85 (288)
T ss_dssp             --EEEEE--SSSSEEEEEET------TS-EEEEEEEEGGG-------CCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SS
T ss_pred             eeeeEecCCCChhheEEEEC------CCccEEEEecChhh-------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecC
Confidence            44567889999999998762      22348999875221       123344777777773   456889999998877


Q ss_pred             eEEEEeeccCCC
Q 042539           97 FLAWAVPYCPGG  108 (412)
Q Consensus        97 ~~~lv~e~~~gg  108 (412)
                      .-||||||++.+
T Consensus        86 ~~fLlle~l~~~   97 (288)
T PF03881_consen   86 DAFLLLEFLEMG   97 (288)
T ss_dssp             CCEEEEE-----
T ss_pred             CceEEEEeecCC
Confidence            779999998766

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PHA03111 Ser/Thr kinase; Provisional

Probab=93.59  E-value=0.16  Score=48.95  Aligned_cols=52  Identities=33%  Similarity=0.421  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----cCceeeeCCCCceEEccCC------------------CEEEccccccchh
Q 042539          124 PSVIRFYLSEIICAIEHLHN----MGIAYRDLKPENILIRQSG------------------HVTLTDFDLSRNL  175 (412)
Q Consensus       124 ~~~~~~~~~qi~~aL~yLH~----~~iiHrDlKp~NiLl~~~g------------------~vkL~DFGla~~~  175 (412)
                      .+-+++++.||+.-.-.+-.    .+.+|-||||+|||+-.+.                  .++|.||.+|+..
T Consensus       278 ~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~  351 (444)
T PHA03111        278 VEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQVA  351 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHHHc
Confidence            35678888888765534422    3699999999999996544                  2678888888654

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=93.36  E-value=0.091  Score=49.69  Aligned_cols=48  Identities=27%  Similarity=0.344  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHc--CceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          128 RFYLSEIICAIEHLHNM--GIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       128 ~~~~~qi~~aL~yLH~~--~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +..+..+-.++.-.|..  -++|.|+.|+|+|.+..|.++|+||-.|..-
T Consensus       135 ~~~~~~l~~~l~~~~~~~~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~  184 (269)
T COG0510         135 RKKLKELRRALEEVPKDDLVPCHNDLNPGNLLLTDKGGLFLIDWEYAGLN  184 (269)
T ss_pred             HHHHHHHHHHhhhcCCCceeeecCCCCccceEEcCCCcEEEEecccCCCc
Confidence            33444444455555443  5899999999999999999999999888653

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=93.32  E-value=0.46  Score=47.22  Aligned_cols=64  Identities=17%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHH-HHcCceeeeCCCCceEEccCCC
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL-HNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yL-H~~~iiHrDlKp~NiLl~~~g~  163 (412)
                      ...++-+|..|..+..++....   .+|...+.++.-.++||--+ --.+.+|.|+.|.||++..+.+
T Consensus       319 ~~vl~E~~~~Gl~v~~~v~~~~---~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~~t  383 (565)
T KOG1236|consen  319 DLVLVETYERGLSVLRFVKWKS---QPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFNKT  383 (565)
T ss_pred             cceeeeeccccccHHhhhhccc---ChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEecCC
Confidence            4567778999988877776544   45656666666666665544 3458999999999999976644

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=93.29  E-value=0.17  Score=49.04  Aligned_cols=52  Identities=31%  Similarity=0.405  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HcCceeeeCCCCceEEccCC------------------CEEEccccccchh
Q 042539          124 PSVIRFYLSEIICAIEHLH----NMGIAYRDLKPENILIRQSG------------------HVTLTDFDLSRNL  175 (412)
Q Consensus       124 ~~~~~~~~~qi~~aL~yLH----~~~iiHrDlKp~NiLl~~~g------------------~vkL~DFGla~~~  175 (412)
                      .+-+++++.||+.-.--+-    -.+.+|-||||+|||+-++.                  .++|.||.+|+..
T Consensus       274 ~~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~  347 (434)
T PF05445_consen  274 VEYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQVA  347 (434)
T ss_pred             HHHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCCceEEEECCeEEEecccceeeecccCHHHhc
Confidence            3556777777765332121    24699999999999986443                  2788899988754

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>PRK10271 thiK thiamine kinase; Provisional

Probab=93.29  E-value=0.059  Score=47.90  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=26.4

Q ss_pred             CceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       145 ~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      -.+|+|+.|.||+++.+| ++|+||+.|...
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~g  107 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGDG  107 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccCC
Confidence            469999999999998877 999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		4e-33
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		6e-33
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		8e-33
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		3e-28
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-28
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-28
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		4e-28
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		3e-27
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		3e-27
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		4e-27
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		3e-26
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		2e-22
3g51_A	325	Structural Diversity Of The Active Conformation Of		3e-26
3g51_A	325	Structural Diversity Of The Active Conformation Of		2e-22
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		4e-26
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		2e-22
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		4e-26
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		7e-26
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-25
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		5e-24
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		3e-25
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		2e-24
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		9e-23
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		1e-22
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		1e-17
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		1e-22
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		1e-17
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		1e-22
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		6e-18
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		1e-22
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		1e-17
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		1e-22
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		6e-18
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		1e-22
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		7e-18
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		1e-22
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		1e-17
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		2e-22
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		3e-22
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		5e-18
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		3e-22
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		6e-18
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		3e-22
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		6e-18
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		3e-22
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		6e-18
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		4e-22
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		7e-18
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		4e-22
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		4e-13
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		4e-22
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		4e-13
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-22
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-13
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-22
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-13
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		4e-22
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		4e-13
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		5e-22
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		4e-13
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		5e-22
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		4e-13
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		5e-22
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		3e-13
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		5e-22
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-13
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		5e-22
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		4e-13
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		5e-22
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		4e-13
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		5e-22
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		6e-13
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		5e-22
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		2e-13
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		5e-22
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		4e-13
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		6e-22
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		4e-13
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		6e-22
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-13
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		8e-22
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		3e-13
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		8e-22
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-21
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-13
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		2e-20
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		5e-20
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		7e-20
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		2e-15
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		7e-20
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		2e-15
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		7e-20
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		2e-15
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		9e-20
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		2e-15
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-19
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		2e-15
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-19
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-15
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-19
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-15
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		2e-19
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		8e-15
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		2e-19
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		2e-15
4ae6_A	343	Structure And Function Of The Human Sperm-specific		2e-19
4ae6_A	343	Structure And Function Of The Human Sperm-specific		2e-15
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		3e-19
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-15
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		4e-19
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		2e-15
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		4e-19
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-15
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		4e-19
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		1e-15
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		4e-19
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		2e-15
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		4e-19
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		2e-15
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		4e-19
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		1e-15
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		4e-19
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		2e-15
4ae9_A	343	Structure And Function Of The Human Sperm-specific		4e-19
4ae9_A	343	Structure And Function Of The Human Sperm-specific		2e-15
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		5e-19
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		2e-15
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		5e-19
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-16
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		5e-19
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		2e-15
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		6e-19
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		2e-15
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		7e-19
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		2e-15
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		8e-19
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		2e-15
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		8e-19
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-15
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		8e-19
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-15
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		9e-19
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-15
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		1e-18
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-15
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		1e-18
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		9e-12
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		1e-18
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		2e-15
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		1e-18
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		2e-15
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		1e-18
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		3e-15
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		1e-18
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		2e-15
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		1e-18
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		2e-15
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		1e-18
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		5e-15
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		1e-18
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		3e-15
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		1e-18
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		2e-15
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		1e-18
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		1e-14
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		2e-18
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		1e-14
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		2e-18
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		4e-15
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-18
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-14
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		2e-18
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		2e-15
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		3e-18
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		3e-18
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		7e-17
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		3e-18
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		3e-15
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		3e-18
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		2e-15
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		3e-18
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		2e-15
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		3e-18
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-15
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-18
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-15
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-18
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		2e-15
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		3e-18
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-15
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		3e-18
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		2e-15
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		3e-18
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		2e-15
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		4e-18
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		2e-15
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		7e-18
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		2e-15
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		8e-18
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		2e-17
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		2e-17
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		3e-17
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		2e-13
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		3e-17
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		2e-13
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		3e-17
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		2e-13
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		3e-17
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		2e-13
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		4e-17
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		4e-17
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-17
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		5e-17
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		7e-17
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		1e-15
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		7e-14
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		1e-15
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		1e-15
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		1e-15
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		1e-15
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		2e-15
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		2e-15
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		6e-15
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		6e-15
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		7e-15
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		8e-15
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		8e-15
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		1e-14
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		1e-14
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		2e-14
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		2e-14
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		2e-14
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		2e-14
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		2e-14
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		2e-14
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		2e-14
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		2e-14
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		2e-14
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		6e-14
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		7e-14
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		1e-13
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-13
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-09
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		3e-13
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		4e-13
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		8e-13
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-12
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		3e-12
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-10
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		4e-12
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		1e-06
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		4e-12
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-12
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		5e-12
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-10
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		5e-12
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		5e-11
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		5e-12
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		5e-12
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		5e-12
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		3e-11
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		5e-12
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		3e-11
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		5e-12
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		4e-11
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		5e-12
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		3e-06
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-12
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		3e-11
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-12
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		3e-11
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		6e-12
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-06
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		6e-12
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		3e-06
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-12
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		4e-11
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-12
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-11
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		6e-12
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		4e-11
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		6e-12
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		7e-11
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-12
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-11
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		6e-12
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-11
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		6e-12
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		5e-11
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		6e-12
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		3e-11
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		6e-12
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		8e-11
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		6e-12
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		1e-11
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		6e-12
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		4e-11
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		6e-12
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		9e-11
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		6e-12
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		3e-11
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		6e-12
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		5e-11
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		7e-12
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-11
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		7e-12
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-11
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		7e-12
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		7e-11
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		7e-12
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		7e-12
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		7e-12
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		7e-12
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		5e-11
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		7e-12
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		4e-11
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		8e-12
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		9e-12
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		1e-11
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		1e-11
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		1e-11
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-11
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-11
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		4e-06
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		1e-11
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		1e-11
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		1e-11
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		1e-11
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		1e-11
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		4e-06
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		1e-11
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-11
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		1e-11
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		1e-11
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		1e-11
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		4e-11
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		1e-11
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		1e-11
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		2e-11
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		2e-11
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-11
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-11
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		3e-11
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		2e-11
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		3e-11
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		3e-11
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		3e-11
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-11
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		1e-07
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		4e-11
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-11
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-07
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-11
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-07
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		5e-11
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		1e-07
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		5e-11
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		6e-11
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		7e-11
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		8e-11
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		8e-11
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		9e-11
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		2e-07
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		1e-10
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		1e-10
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-10
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-07
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		1e-10
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		1e-10
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		2e-08
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		1e-10
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		1e-10
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		2e-08
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-10
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-07
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		3e-10
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		3e-10
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		3e-10
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-10
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		4e-10
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-10
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		4e-10
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		5e-10
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-10
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		5e-10
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		5e-10
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-10
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		5e-10
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		5e-10
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		4e-06
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		5e-10
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		5e-10
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		5e-10
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		5e-10
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		5e-10
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		6e-10
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		6e-10
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		1e-06
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		6e-10
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		6e-10
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		6e-10
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		6e-10
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		6e-10
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		6e-10
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		6e-10
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		6e-10
3a7f_A	303	Human Mst3 Kinase Length = 303		7e-10
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		7e-10
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		7e-10
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		8e-10
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		8e-10
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		8e-10
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		8e-10
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		8e-10
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		9e-10
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		9e-10
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		9e-10
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		9e-10
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-07
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		1e-09
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-09
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-09
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-07
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		2e-09
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		2e-09
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		8e-07
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-09
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-09
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		2e-09
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		2e-09
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-09
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		3e-09
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		3e-09
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		3e-09
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		3e-09
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		4e-09
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-09
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		4e-09
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		5e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		4e-09
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		4e-09
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		4e-09
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		1e-08
2iwi_A	312	Crystal Structure Of The Human Pim2 In Complex With		4e-09
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		4e-09
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		5e-09
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		6e-04
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		7e-09
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		7e-09
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		9e-09
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		1e-04
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-08
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		1e-08
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		3e-06
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		1e-08
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		2e-06
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		1e-08
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		3e-06
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		2e-08
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		2e-08
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		4e-04
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		2e-08
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		2e-08
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		3e-08
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		3e-08
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		3e-08
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		4e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		3e-08
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		3e-08
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		6e-07
3kk9_A	282	Camkii Substrate Complex B Length = 282		3e-08
3kk9_A	282	Camkii Substrate Complex B Length = 282		6e-07
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		3e-08
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		3e-08
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		3e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		3e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		6e-07
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		3e-08
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		3e-08
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		3e-08
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		3e-08
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		4e-08
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		4e-08
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		4e-08
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		4e-08
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		4e-08
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		4e-08
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		4e-08
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		4e-08
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		4e-08
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		4e-08
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		4e-08
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		2e-06
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		4e-08
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		4e-08
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		1e-06
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		4e-08
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		4e-08
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		5e-08
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		5e-08
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		5e-08
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		4e-07
3soa_A	444	Full-Length Human Camkii Length = 444		5e-08
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		6e-08
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-08
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		6e-08
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		6e-08
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		6e-08
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		7e-08
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		6e-08
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		7e-08
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		7e-08
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		8e-08
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		9e-08
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		9e-08
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		1e-07
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		1e-07
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		1e-07
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		1e-07
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-07
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-07
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		1e-07
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-07
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-07
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		1e-07
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		5e-04
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-07
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		2e-07
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		2e-07
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		2e-07
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		8e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		2e-07
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		9e-04
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		2e-07
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		2e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-07
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		2e-07
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		8e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		2e-07
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		2e-07
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		2e-07
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		2e-07
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		2e-07
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		2e-07
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-07
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		2e-07
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		2e-07
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-07
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-07
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-07
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-07
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-07
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-07
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		2e-07
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		2e-07
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-07
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-07
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		2e-07
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-07
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-07
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-07
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-07
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-07
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-07
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		2e-07
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-07
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-07
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		2e-07
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-07
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		2e-07
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		2e-07
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-07
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		2e-07
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		2e-07
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-07
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-07
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-07
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-07
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		3e-07
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		9e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-07
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-07
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-07
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		4e-07
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		6e-05
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		4e-07
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		4e-07
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		4e-07
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		5e-05
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		4e-07
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		8e-06
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		4e-07
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		8e-06
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		5e-07
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		5e-07
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		5e-07
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		5e-07
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		5e-07
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		6e-07
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		6e-07
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		6e-07
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		6e-07
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		6e-07
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		6e-07
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		6e-07
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		6e-07
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		6e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		6e-07
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		6e-07
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		6e-07
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		6e-07
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		6e-07
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		7e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		7e-07
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		7e-07
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		7e-07
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		7e-07
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		7e-07
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		7e-07
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		7e-07
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		8e-07
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		8e-07
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		8e-07
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		8e-07
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		8e-07
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		8e-07
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		8e-07
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		9e-07
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		9e-07
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		1e-06
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		1e-06
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		1e-06
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		1e-06
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		1e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-06
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		1e-06
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		1e-06
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		1e-06
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		1e-06
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		1e-06
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		1e-06
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-06
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		1e-06
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		1e-06
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		1e-06
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		1e-06
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-06
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-06
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		2e-06
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-06
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-06
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-06
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		2e-06
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-06
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		2e-06
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		2e-06
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		2e-06
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		2e-06
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		2e-06
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-06
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		2e-06
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		2e-06
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		2e-06
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-06
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-06
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		2e-06
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		2e-06
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		2e-06
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		2e-06
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-06
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		2e-06
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		2e-06
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		2e-06
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		2e-06
2oza_B	366	Structure Of P38alpha Complex Length = 366		2e-06
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-06
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-06
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		2e-06
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		4e-04
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-06
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		2e-06
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		2e-06
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-06
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		2e-06
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-06
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-06
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-06
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-06
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		2e-06
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-06
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		2e-06
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		2e-06
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		9e-05
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		2e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-06
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		2e-06
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-06
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-06
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-06
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-06
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-06
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		2e-06
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		9e-06
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		2e-06
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		3e-06
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		4e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		3e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		3e-06
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		3e-06
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		3e-06
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		3e-06
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		3e-06
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		3e-06
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		5e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		3e-06
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		3e-06
4f99_A	361	Human Cdc7 Kinase In Complex With Dbf4 And Nucleoti		3e-06
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		3e-06
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		1e-05
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		3e-06
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		3e-06
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		4e-06
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		4e-06
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		4e-06
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		4e-06
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		4e-06
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		4e-06
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		4e-06
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		4e-06
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		4e-06
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		4e-06
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-06
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		4e-06
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-06
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		5e-06
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		1e-04
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		5e-06
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		5e-06
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		5e-06
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		1e-04
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		5e-06
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		5e-06
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		5e-06
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		5e-06
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		5e-06
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		5e-06
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		5e-06
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		5e-06
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		5e-06
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		5e-06
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		5e-06
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		4e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		5e-06
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		5e-06
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		5e-06
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		5e-06
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		5e-06
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		6e-06
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		6e-06
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		6e-06
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		6e-06
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		6e-06
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		6e-06
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-06
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		6e-06
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		6e-06
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		7e-06
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		2e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		7e-06
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		2e-04
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		7e-06
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		7e-06
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		8e-05
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		9e-06
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		9e-06
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		9e-06
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		1e-05
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		1e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		1e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		1e-05
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		1e-05
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		1e-05
3juh_A	335	Crystal Structure Of A Mutant Of Human Protein Kina		1e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		1e-05
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		1e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		1e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		1e-05
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		1e-05
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		1e-05
4dgl_C	335	Crystal Structure Of The Ck2 Tetrameric Holoenzyme		2e-05
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		2e-05
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		2e-05
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		2e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		2e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		3e-05
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		2e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-05
3bqc_A	335	High Ph-Value Crystal Structure Of Emodin In Comple		2e-05
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		2e-05
2zjw_A	340	Crystal Structure Of Human Ck2 Alpha Complexed With		2e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-05
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		2e-05
3nga_A	333	Human Ck2 Catalytic Domain In Complex With Cx-4945		2e-05
1pjk_A	334	Crystal Structure Of A C-terminal Deletion Mutant O		2e-05
3u87_A	349	Structure Of A Chimeric Construct Of Human Ck2alpha		2e-05
3h30_A	334	Crystal Structure Of The Catalytic Subunit Of Human		2e-05
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		2e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		2e-05
3q9w_A	336	Crystal Structure Of Human Ck2 Alpha In Complex Wit		2e-05
2r7i_A	335	Crystal Structure Of Catalytic Subunit Of Protein K		2e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		2e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		3e-05
3nsz_A	330	Human Ck2 Catalytic Domain In Complex With Amppn Le		2e-05
3mb6_A	331	Human Ck2 Catalytic Domain In Complex With A Difura		2e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		2e-05
3q04_A	328	Crystal Structure Of The Apo-Form Of Human Ck2 Alph		2e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-05
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-05
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		2e-05
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		2e-05
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		2e-05
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-05
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-05
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		3e-05
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		3e-05
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		3e-05
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		3e-05
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-05
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		3e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		3e-05
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		3e-05
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		3e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		3e-05
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		3e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		3e-05
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		3e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		3e-05
3e3b_X	339	Crystal Structure Of Catalytic Subunit Of Human Pro		3e-05
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		3e-05
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		3e-05
3ofm_A	350	Structure Of A Human Ck2alpha Prime, The Paralog Is		4e-05
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		4e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		4e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		4e-05
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		4e-05
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		4e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		4e-05
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		4e-05
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		4e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		4e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-05
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		6e-05
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		6e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		7e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		7e-05
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		7e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		7e-05
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		7e-05
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		7e-05
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		7e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		7e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		7e-05
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		8e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-05
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		8e-05
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		8e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		8e-05
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		8e-05
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		8e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		8e-05
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		8e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-05
4as0_A	273	Cyclometalated Phthalimides As Protein Kinase Inhib		9e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		9e-05
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		9e-05
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		9e-05
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		9e-05
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		9e-05
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		9e-05
2bik_B	313	Human Pim1 Phosphorylated On Ser261 Length = 313		1e-04
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		1e-04
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		1e-04
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		1e-04
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		1e-04
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-04
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		1e-04
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-04
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		1e-04
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		1e-04
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-04
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		1e-04
3ma3_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-04
2j2i_B	312	Crystal Structure Of The Humab Pim1 In Complex With		1e-04
2bil_B	313	The Human Protein Kinase Pim1 In Complex With Its C		1e-04
3jpv_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-04
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		1e-04
3cy3_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-04
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		1e-04
3cxw_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-04
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		1e-04
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		1e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		1e-04
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		1e-04
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		1e-04
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		1e-04
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		1e-04
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		1e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		1e-04
2oza_A	356	Structure Of P38alpha Complex Length = 356		1e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-04
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		1e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		1e-04
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		1e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		1e-04
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		1e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		1e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-04
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		2e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		2e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		2e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3kga_A	299	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexe		2e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-04
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		2e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-04
4hgl_A	330	Crystal Structure Of Ck1g3 With Compound 1 Length =		2e-04
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		2e-04
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		3e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		3e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		3e-04
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		3e-04
2izr_A	330	Structure Of Casein Kinase Gamma 3 In Complex With		3e-04
2chl_A	351	Structure Of Casein Kinase 1 Gamma 3 Length = 351		3e-04
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		3e-04
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		3e-04
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		3e-04
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		3e-04
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		3e-04
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		3e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		3e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		4e-04
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		4e-04
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		4e-04
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		4e-04
4exu_A	371	Mapk13, Inactive Form Length = 371		4e-04
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		4e-04
2pzi_A	681	Crystal Structure Of Protein Kinase Pkng From Mycob		4e-04
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		4e-04
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		4e-04
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		4e-04
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		4e-04
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		4e-04
4fl3_A	635	Structural And Biophysical Characterization Of The		4e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		5e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-04
4fl2_A	636	Structural And Biophysical Characterization Of The		5e-04
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		5e-04
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		5e-04
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		5e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		5e-04
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		5e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		5e-04
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		5e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		5e-04
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		5e-04
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		6e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		6e-04
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		6e-04
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		6e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		6e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		6e-04
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		6e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		6e-04
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		6e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		6e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		6e-04
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		6e-04
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		6e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		7e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		7e-04
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		7e-04
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		8e-04
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		8e-04
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		8e-04
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		8e-04
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		8e-04
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		8e-04
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		9e-04
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		9e-04
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		9e-04
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		9e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		9e-04
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		9e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		9e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		9e-04
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		9e-04

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 160/339 (47%), Gaps = 71/339 (20%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 29  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 83
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 84  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 141
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L                      
Sbjct: 142 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------------------- 180
Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP 257
                            PE+K                R  SF         VGT +YVSP
Sbjct: 181 -----------------PESKQA--------------RANSF---------VGTAQYVSP 200
Query: 258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQ-RTALTD 316
           E++       + D WALG + Y+++ G  PFR  N    F+ ++    +F  +      D
Sbjct: 201 ELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARD 260
Query: 317 LIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
           L+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 261 LVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 299

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 160/339 (47%), Gaps = 71/339 (20%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 33  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 87
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 88  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 145
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L                      
Sbjct: 146 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------------------- 184
Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP 257
                            PE+K                R  SF         VGT +YVSP
Sbjct: 185 -----------------PESKQA--------------RANSF---------VGTAQYVSP 204
Query: 258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQ-RTALTD 316
           E++       + D WALG + Y+++ G  PFR  N    F+ ++    +F  +      D
Sbjct: 205 ELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARD 264
Query: 317 LIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
           L+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 265 LVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 303

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 159/339 (46%), Gaps = 71/339 (20%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 86
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G L  L+Y +    F  +  RFY +EI+ A
Sbjct: 87  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGCL--LKYIRKIGSFDETCTRFYTAEIVSA 144
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L                      
Sbjct: 145 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS--------------------- 183
Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP 257
                            PE+K                R  SF         VGT +YVSP
Sbjct: 184 -----------------PESKQA--------------RANSF---------VGTAQYVSP 203
Query: 258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQ-RTALTD 316
           E++       + D WALG + Y+++ G  PFR  N    F+ ++    +F  +      D
Sbjct: 204 ELLTEKSASKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARD 263
Query: 317 LIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
           L+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 264 LVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 302

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 77/350 (22%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            ++LG+G  G VF    +A      C              K +  + A  E ++L+++  
Sbjct: 190 FRVLGRGGFGEVFACQMKATGKLYAC-----KKLNKKRLKKRKGYQGAMVEKKILAKVHS 244
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            F+  L  + ET   L   +    GGD+  ++    +++  F      FY ++I+  +EH
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           LH   I YRDLKPEN+L+   G+V ++D  L+  L                         
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL------------------------- 339
Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
                            K G  KTK                      + GT  +++PE++
Sbjct: 340 -----------------KAGQTKTK---------------------GYAGTPGFMAPELL 361
Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPEFVGQRT-ALT 315
            G+ ++F+VD++ALG+  YEM+    PFR +      KE  + VL +   +  + + A  
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASK 421
Query: 316 DLIQRLLEKDPVKRLGYLRGACE-IKEHVFFKGVRW-DLLTDVLRPPFIP 363
           D  + LL+KDP KRLG+  G+C+ ++ H  F+ + W  L   +L PPF+P
Sbjct: 422 DFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 77/350 (22%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            ++LG+G  G VF    +A      C              K +  + A  E ++L+++  
Sbjct: 190 FRVLGRGGFGEVFACQMKATGKLYAC-----KKLNKKRLKKRKGYQGAMVEKKILAKVHS 244
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            F+  L  + ET   L   +    GGD+  ++    +++  F      FY ++I+  +EH
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           LH   I YRDLKPEN+L+   G+V ++D  L+  L                         
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL------------------------- 339
Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
                            K G  KTK                      + GT  +++PE++
Sbjct: 340 -----------------KAGQTKTK---------------------GYAGTPGFMAPELL 361
Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPEFVGQRT-ALT 315
            G+ ++F+VD++ALG+  YEM+    PFR +      KE  + VL +   +  + + A  
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASK 421
Query: 316 DLIQRLLEKDPVKRLGYLRGACE-IKEHVFFKGVRW-DLLTDVLRPPFIP 363
           D  + LL+KDP KRLG+  G+C+ ++ H  F+ + W  L   +L PPF+P
Sbjct: 422 DFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 77/350 (22%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            ++LG+G  G VF    +A      C              K +  + A  E ++L+++  
Sbjct: 190 FRVLGRGGFGEVFACQMKATGKLYAC-----KKLNKKRLKKRKGYQGAMVEKKILAKVHS 244
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            F+  L  + ET   L   +    GGD+  ++    +++  F      FY ++I+  +EH
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           LH   I YRDLKPEN+L+   G+V ++D  L+  L                         
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL------------------------- 339
Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
                            K G  KTK                      + GT  +++PE++
Sbjct: 340 -----------------KAGQTKTK---------------------GYAGTPGFMAPELL 361
Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPEFVGQRT-ALT 315
            G+ ++F+VD++ALG+  YEM+    PFR +      KE  + VL +   +  + + A  
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASK 421
Query: 316 DLIQRLLEKDPVKRLGYLRGACE-IKEHVFFKGVRW-DLLTDVLRPPFIP 363
           D  + LL+KDP KRLG+  G+C+ ++ H  F+ + W  L   +L PPF+P
Sbjct: 422 DFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 77/350 (22%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            ++LG+G  G VF    +A      C              K +  + A  E ++L+++  
Sbjct: 190 FRVLGRGGFGEVFACQMKATGKLYAC-----KKLNKKRLKKRKGYQGAMVEKKILAKVHS 244
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            F+  L  + ET   L   +    GGD+  ++    +++  F      FY ++I+  +EH
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           LH   I YRDLKPEN+L+   G+V ++D  L+  L                         
Sbjct: 305 LHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL------------------------- 339
Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
                            K G  KTK                      + GT  +++PE++
Sbjct: 340 -----------------KAGQTKTK---------------------GYAGTPGFMAPELL 361
Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPEFVGQRT-ALT 315
            G+ ++F+VD++ALG+  YEM+    PFR +      KE  + VL +   +  + + A  
Sbjct: 362 LGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASK 421
Query: 316 DLIQRLLEKDPVKRLGYLRGACE-IKEHVFFKGVRW-DLLTDVLRPPFIP 363
           D  + LL+KDP KRLG+  G+C+ ++ H  F+ + W  L   +L PPF+P
Sbjct: 422 DFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 85/354 (24%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-V 76
           ++ + +K++G+GA G V LV  +    + R  +A+K++ K  +  + ++     WE R +
Sbjct: 69  EDYEVVKVIGRGAFGEVQLVRHK----STRKVYAMKLLSKFEMIKRSDSA--FFWEERDI 122
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           ++  + P++ +L  + + D +L   + Y PGGDL  L    +         RFY +E++ 
Sbjct: 123 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD---VPEKWARFYTAEVVL 179
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A++ +H+MG  +RD+KP+N+L+ +SGH+ L DF     +                     
Sbjct: 180 ALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM--------------------- 218
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                               NK G+ +  +A                     VGT +Y+S
Sbjct: 219 --------------------NKEGMVRCDTA---------------------VGTPDYIS 237
Query: 257 PEVVR---GDGHEF-AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEF 307
           PEV++   GDG+     DWW++G+  YEML G TPF   +   T+  ++     +  P+ 
Sbjct: 238 PEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDD 297
Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR--WDLLTDVLRP 359
                   +LI   L    V RLG   G  EIK H+FFK  +  W+ L D + P
Sbjct: 298 NDISKEAKNLICAFLTDREV-RLG-RNGVEEIKRHLFFKNDQWAWETLRDTVAP 349

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 85/354 (24%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-V 76
           ++ + +K++G+GA G V LV  +    + R  +A+K++ K  +  + ++     WE R +
Sbjct: 74  EDYEVVKVIGRGAFGEVQLVRHK----STRKVYAMKLLSKFEMIKRSDSA--FFWEERDI 127
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           ++  + P++ +L  + + D +L   + Y PGGDL  L    +         RFY +E++ 
Sbjct: 128 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD---VPEKWARFYTAEVVL 184
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A++ +H+MG  +RD+KP+N+L+ +SGH+ L DF     +                     
Sbjct: 185 ALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM--------------------- 223
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                               NK G+ +  +A                     VGT +Y+S
Sbjct: 224 --------------------NKEGMVRCDTA---------------------VGTPDYIS 242
Query: 257 PEVVR---GDGHEF-AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEF 307
           PEV++   GDG+     DWW++G+  YEML G TPF   +   T+  ++     +  P+ 
Sbjct: 243 PEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDD 302
Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR--WDLLTDVLRP 359
                   +LI   L    V RLG   G  EIK H+FFK  +  W+ L D + P
Sbjct: 303 NDISKEAKNLICAFLTDREV-RLG-RNGVEEIKRHLFFKNDQWAWETLRDTVAP 354

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 85/354 (24%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-V 76
           ++ + +K++G+GA G V LV  +    + R  +A+K++ K  +  + ++     WE R +
Sbjct: 74  EDYEVVKVIGRGAFGEVQLVRHK----STRKVYAMKLLSKFEMIKRSDSA--FFWEERDI 127
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           ++  + P++ +L  + + D +L   + Y PGGDL  L    +         RFY +E++ 
Sbjct: 128 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD---VPEKWARFYTAEVVL 184
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A++ +H+MG  +RD+KP+N+L+ +SGH+ L DF     +                     
Sbjct: 185 ALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM--------------------- 223
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                               NK G+ +  +A                     VGT +Y+S
Sbjct: 224 --------------------NKEGMVRCDTA---------------------VGTPDYIS 242
Query: 257 PEVVR---GDGHEF-AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEF 307
           PEV++   GDG+     DWW++G+  YEML G TPF   +   T+  ++     +  P+ 
Sbjct: 243 PEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDD 302
Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR--WDLLTDVLRP 359
                   +LI   L    V RLG   G  EIK H+FFK  +  W+ L D + P
Sbjct: 303 NDISKEAKNLICAFLTDREV-RLG-RNGVEEIKRHLFFKNDQWAWETLRDTVAP 354

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 5/161 (3%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D    + LK+LG+G+ G VFLV  + +   AR  +A+KV+ K+TL  +     R + E  
Sbjct: 22  DPSQFELLKVLGQGSFGKVFLV-KKISGSDARQLYAMKVLKKATLKVRDRV--RTKMERD 78
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++HPF+ KL  + +T+  L   + +  GGDL     K+   +F+   ++FYL+E+ 
Sbjct: 79  ILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELA 136
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            A++HLH++GI YRDLKPENIL+ + GH+ LTDF LS+  +
Sbjct: 137 LALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWAL 274
           PEN   L +    +++     ++S D+ +++ SF GT EY++PEVV   GH  + DWW+ 
Sbjct: 154 PENIL-LDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 212
Query: 275 GILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLG 331
           G+L +EML GT PF+GK+RKET   +L   +  P+F+        L++ L +++P  RLG
Sbjct: 213 GVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEA--QSLLRMLFKRNPANRLG 270
Query: 332 Y-LRGACEIKEHVFFKGVRWD-LLTDVLRPPFIP 363
               G  EIK H FF  + W+ L    + PPF P
Sbjct: 271 AGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKP 304

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 5/161 (3%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D    + LK+LG+G+ G VFLV  + +   AR  +A+KV+ K+TL  +     R + E  
Sbjct: 22  DPSQFELLKVLGQGSFGKVFLV-KKISGSDARQLYAMKVLKKATLKVRDRV--RTKMERD 78
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++HPF+ KL  + +T+  L   + +  GGDL     K+   +F+   ++FYL+E+ 
Sbjct: 79  ILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELA 136
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            A++HLH++GI YRDLKPENIL+ + GH+ LTDF LS+  +
Sbjct: 137 LALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 8/155 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWAL 274
           PEN   L +    +++     ++S D+ +++ SF GT EY++PEVV   GH  + DWW+ 
Sbjct: 154 PENIL-LDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 212
Query: 275 GILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLG 331
           G+L +EML GT PF+GK+RKET   +L   +  P+F+        L++ L +++P  RLG
Sbjct: 213 GVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQ--SLLRMLFKRNPANRLG 270
Query: 332 Y-LRGACEIKEHVFFKGVRWD-LLTDVLRPPFIPS 364
               G  EIK H FF  + W+ L    + PPF P+
Sbjct: 271 AGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKPA 305

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 5/161 (3%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D    + LK+LG+G+ G VFLV  + +   AR  +A+KV+ K+TL  +     R + E  
Sbjct: 23  DPSQFELLKVLGQGSFGKVFLV-KKISGSDARQLYAMKVLKKATLKVRDRV--RTKMERD 79
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++HPF+ KL  + +T+  L   + +  GGDL     K+   +F+   ++FYL+E+ 
Sbjct: 80  ILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELA 137
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            A++HLH++GI YRDLKPENIL+ + GH+ LTDF LS+  +
Sbjct: 138 LALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 178

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWAL 274
           PEN   L +    +++     ++S D+ +++ SF GT EY++PEVV   GH  + DWW+ 
Sbjct: 155 PENIL-LDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 213
Query: 275 GILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLG 331
           G+L +EML GT PF+GK+RKET   +L   +  P+F+        L++ L +++P  RLG
Sbjct: 214 GVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEA--QSLLRMLFKRNPANRLG 271
Query: 332 Y-LRGACEIKEHVFFKGVRWD-LLTDVLRPPFIP 363
               G  EIK H FF  + W+ L    + PPF P
Sbjct: 272 AGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKP 305

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 78/358 (21%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRL 80
           L++LGKG  G VF V       T +  FA+KV+ K+ +  +AK  A  +A  E  +L  +
Sbjct: 22  LRVLGKGGYGKVFQVRKVTGANTGKI-FAMKVLKKAMIVRNAKDTAHTKA--ERNILEEV 78
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            HPF+  L+ + +T            GG L ++                        +E+
Sbjct: 79  KHPFIVDLIYAFQT------------GGKLYLI------------------------LEY 102
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           L   G  +  L+ E I +  +    L +  ++   + +     + L              
Sbjct: 103 LSG-GELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLK------------- 148
Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
                         PEN   L      +++     ++S  +G  +++F GT EY++PE++
Sbjct: 149 --------------PENIM-LNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEIL 193
Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDL 317
              GH  AVDWW+LG L Y+ML G  PF G+NRK+T   +L   +  P ++ Q     DL
Sbjct: 194 MRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEA--RDL 251
Query: 318 IQRLLEKDPVKRLGYLRG-ACEIKEHVFFKGVRW-DLLTDVLRPPFIP-SREENDLTE 372
           +++LL+++   RLG   G A E++ H FF+ + W +LL   + PPF P  + E D+++
Sbjct: 252 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQ 309

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 161/358 (44%), Gaps = 78/358 (21%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRL 80
           L++LGKG  G VF V       T +  FA+KV+ K+ +  +AK  A  +A  E  +L  +
Sbjct: 22  LRVLGKGGYGKVFQVRKVTGANTGKI-FAMKVLKKAMIVRNAKDTAHTKA--ERNILEEV 78
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            HPF+  L+ + +T            GG L ++                        +E+
Sbjct: 79  KHPFIVDLIYAFQT------------GGKLYLI------------------------LEY 102
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           L   G  +  L+ E I +  +    L +  ++   + +     + L              
Sbjct: 103 LSG-GELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLK------------- 148
Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
                         PEN   L      +++     ++S  +G  ++ F GT EY++PE++
Sbjct: 149 --------------PENIM-LNHQGHVKLTDFGLCKESIHDGTVTHXFCGTIEYMAPEIL 193
Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDL 317
              GH  AVDWW+LG L Y+ML G  PF G+NRK+T   +L   +  P ++ Q     DL
Sbjct: 194 MRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEA--RDL 251
Query: 318 IQRLLEKDPVKRLGYLRG-ACEIKEHVFFKGVRW-DLLTDVLRPPFIP-SREENDLTE 372
           +++LL+++   RLG   G A E++ H FF+ + W +LL   + PPF P  + E D+++
Sbjct: 252 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQ 309

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 100/161 (62%), Gaps = 5/161 (3%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D  + + LK+LG+G+ G VFLV  +   P +   +A+KV+ K+TL  +     R + E  
Sbjct: 26  DPSHFELLKVLGQGSFGKVFLVR-KVTRPDSGHLYAMKVLKKATLKVRDRV--RTKMERD 82
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L+ ++HPF+ KL  + +T+  L   + +  GGDL     K+   +F+   ++FYL+E+ 
Sbjct: 83  ILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELA 140
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
             ++HLH++GI YRDLKPENIL+ + GH+ LTDF LS+  +
Sbjct: 141 LGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAI 181

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 8/162 (4%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWAL 274
           PEN   L +    +++     +++ D+ +++ SF GT EY++PEVV   GH  + DWW+ 
Sbjct: 158 PENIL-LDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSY 216
Query: 275 GILTYEMLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLG 331
           G+L +EML G+ PF+GK+RKET   +L   +  P+F+   T    L++ L +++P  RLG
Sbjct: 217 GVLMFEMLTGSLPFQGKDRKETMTLILKAKLGMPQFLS--TEAQSLLRALFKRNPANRLG 274
Query: 332 Y-LRGACEIKEHVFFKGVRWD-LLTDVLRPPFIPSREENDLT 371
               GA EIK HVF+  + W+ L    ++PPF P+  + D T
Sbjct: 275 SGPDGAEEIKRHVFYSTIDWNKLYRREIKPPFKPAVAQPDDT 316

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 88/142 (61%), Gaps = 10/142 (7%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRK--- 294
           D  ER+  F GT EY++P++VRG   GH+ AVDWW+LG+L YE+L G +PF     K   
Sbjct: 212 DETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQ 271
Query: 295 -ETFRNVLMKTPEFVGQRTALT-DLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWD 351
            E  R +L   P +  + +AL  DLIQRLL KDP KRLG   R A EIKEH+FF+ + WD
Sbjct: 272 AEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWD 331
Query: 352 LLTDVLRP-PFIPS-REENDLT 371
            L     P PF P  R+E D++
Sbjct: 332 DLAAKKVPAPFKPVIRDELDVS 353

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 83/344 (24%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-V 76
           ++   +K++G+GA G V LV  +A+       +A+K++ K  +  +  ++    WE R +
Sbjct: 75  EDYDVVKVIGRGAFGEVQLVRHKASQKV----YAMKLLSKFEMIKR--SDSAFFWEERDI 128
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           ++  + P++ +L  + + D++L   + Y PGGDL  L    +         +FY +E++ 
Sbjct: 129 MAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYD---VPEKWAKFYTAEVVL 185
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A++ +H+MG+ +RD+KP+N+L+ + GH+ L DF     +                     
Sbjct: 186 ALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKM--------------------- 224
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                               ++TG+    +A  +P                     +Y+S
Sbjct: 225 --------------------DETGMVHCDTAVGTP---------------------DYIS 243
Query: 257 PEVVR---GDGHEF-AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEF 307
           PEV++   GDG+     DWW++G+  +EML G TPF   +   T+  ++     +  PE 
Sbjct: 244 PEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLCFPED 303
Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD 351
                   +LI   L    V RLG   G  EIK+H FFK  +W+
Sbjct: 304 AEISKHAKNLICAFLTDREV-RLGR-NGVEEIKQHPFFKNDQWN 345

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 134/316 (42%), Gaps = 77/316 (24%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 24  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 78
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 79  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 136
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S                        
Sbjct: 137 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS------------------------ 172
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                         +HA                 P SRR           +  GT +Y+ 
Sbjct: 173 --------------VHA-----------------PSSRR----------TTLCGTLDYLP 191
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NVLMKTPEFVGQRTA 313
           PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V    P+FV +   
Sbjct: 192 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTE--G 249
Query: 314 LTDLIQRLLEKDPVKR 329
             DLI RLL+ +P +R
Sbjct: 250 ARDLISRLLKHNPSQR 265

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 9   MNDFDYLKLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRV 63
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ 
Sbjct: 64  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVS 121
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  +   A  K      ++    V
Sbjct: 122 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEV 181
Query: 197 TENPKRHRRI 206
            E+    R +
Sbjct: 182 LEDNDYGRAV 191

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G     F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 143 LDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 202
Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ +  F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 203 MMCGRLPFYNQDHERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA 260
Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
            E+ EH FF  + W D++   L PPF P 
Sbjct: 261 KEVMEHRFFLSINWQDVVQKKLLPPFKPQ 289

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRV 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ 
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVS 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  +   A  K      ++    V
Sbjct: 117 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEV 176
Query: 197 TENPKRHRRI 206
            E+    R +
Sbjct: 177 LEDNDYGRAV 186

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G     F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 138 LDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 197
Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ +  F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 198 MMCGRLPFYNQDHERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA 255
Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
            E+ EH FF  + W D++   L PPF P 
Sbjct: 256 KEVMEHRFFLSINWQDVVQKKLLPPFKPQ 284

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRV 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ 
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVS 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  +   A  K      ++    V
Sbjct: 117 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEV 176
Query: 197 TENPKRHRRI 206
            E+    R +
Sbjct: 177 LEDNDYGRAV 186

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G    +F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 138 LDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 197
Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ +  F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 198 MMCGRLPFYNQDHERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA 255
Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
            E+ EH FF  + W D++   L PPF P 
Sbjct: 256 KEVMEHRFFLSINWQDVVQKKLLPPFKPQ 284

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRV 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ 
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVS 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  +   A  K      ++    V
Sbjct: 117 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEV 176
Query: 197 TENPKRHRRI 206
            E+    R +
Sbjct: 177 LEDNDYGRAV 186

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G     F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 138 LDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 197
Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ +  F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 198 MMCGRLPFYNQDHERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA 255
Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
            E+ EH FF  + W D++   L PPF P 
Sbjct: 256 KEVMEHRFFLSINWQDVVQKKLLPPFKPQ 284

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRV 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ 
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVS 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  +   A  K      ++    V
Sbjct: 117 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEV 176
Query: 197 TENPKRHRRI 206
            E+    R +
Sbjct: 177 LEDNDYGRAV 186

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G    +F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 138 LDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 197
Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ +  F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 198 MMCGRLPFYNQDHERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA 255
Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
            E+ EH FF  + W D++   L PPF P 
Sbjct: 256 KEVMEHRFFLSINWQDVVQKKLLPPFKPQ 284

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 7   MNDFDYLKLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRV 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ 
Sbjct: 62  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVS 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  +   A  K      ++    V
Sbjct: 120 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEV 179
Query: 197 TENPKRHRRI 206
            E+    R +
Sbjct: 180 LEDNDYGRAV 189

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G    +F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 141 LDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 200
Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ +  F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 201 MMCGRLPFYNQDHERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA 258
Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
            E+ EH FF  + W D++   L PPF P 
Sbjct: 259 KEVMEHRFFLSINWQDVVQKKLLPPFKPQ 287

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKA---TGRY-YAMKILRKEVIIAKDEVAHTVT-ESRV 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI+ 
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVS 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  +   A  K      ++    V
Sbjct: 117 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEV 176
Query: 197 TENPKRHRRI 206
            E+    R +
Sbjct: 177 LEDNDYGRAV 186

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G     F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 138 LDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 197
Query: 281 MLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ +  F  +LM+   F   RT       L+  LL+KDP +RL G    A
Sbjct: 198 MMCGRLPFYNQDHERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA 255
Query: 337 CEIKEHVFFKGVRW-DLLTDVLRPPFIPS 364
            E+ EH FF  + W D++   L PPF P 
Sbjct: 256 KEVMEHRFFLSINWQDVVQKKLLPPFKPQ 284

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 134/316 (42%), Gaps = 77/316 (24%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S                        
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS------------------------ 155
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                         +HA                 P SRR +            GT +Y+ 
Sbjct: 156 --------------VHA-----------------PSSRRTE----------LCGTLDYLP 174
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NVLMKTPEFVGQRTA 313
           PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V    P+FV +   
Sbjct: 175 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTE--G 232
Query: 314 LTDLIQRLLEKDPVKR 329
             DLI RLL+ +P +R
Sbjct: 233 ARDLISRLLKHNPSQR 248

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++  + LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 150 MNEFEYLKLLGKGTFGKVILVKEKA---TGRY-YAMKILKKEVIVAKDEVAHTLT-ENRV 204
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ 
Sbjct: 205 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERVFSEDRARFYGAEIVS 262
Query: 137 AIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           A+++LH+   + YRDLK EN+++ + GH+ +TDF L +  +K  A  K      ++    
Sbjct: 263 ALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPE 322
Query: 196 VTENPKRHRRI 206
           V E+    R +
Sbjct: 323 VLEDNDYGRAV 333

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G    +F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 285 LDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 344
Query: 281 MLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ ++ F  +LM+    P  +G       L+  LL+KDP +RL G    A
Sbjct: 345 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAK--SLLSGLLKKDPKQRLGGGSEDA 402
Query: 337 CEIKEHVFFKGVRWD-LLTDVLRPPFIPS 364
            EI +H FF G+ W  +    L PPF P 
Sbjct: 403 KEIMQHRFFAGIVWQHVYEKKLSPPFKPQ 431

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++  + LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 147 MNEFEYLKLLGKGTFGKVILVKEKA---TGRY-YAMKILKKEVIVAKDEVAHTLT-ENRV 201
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ 
Sbjct: 202 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERVFSEDRARFYGAEIVS 259
Query: 137 AIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           A+++LH+   + YRDLK EN+++ + GH+ +TDF L +  +K  A  K      ++    
Sbjct: 260 ALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPE 319
Query: 196 VTENPKRHRRI 206
           V E+    R +
Sbjct: 320 VLEDNDYGRAV 330

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G    +F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 282 LDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 341
Query: 281 MLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ ++ F  +LM+    P  +G       L+  LL+KDP +RL G    A
Sbjct: 342 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAK--SLLSGLLKKDPKQRLGGGSEDA 399
Query: 337 CEIKEHVFFKGVRWD-LLTDVLRPPFIPS 364
            EI +H FF G+ W  +    L PPF P 
Sbjct: 400 KEIMQHRFFAGIVWQHVYEKKLSPPFKPQ 428

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++  + LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 8   MNEFEYLKLLGKGTFGKVILVKEKA---TGRY-YAMKILKKEVIVAKDEVAHTLT-ENRV 62
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ 
Sbjct: 63  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERVFSEDRARFYGAEIVS 120
Query: 137 AIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           A+++LH+   + YRDLK EN+++ + GH+ +TDF L +  +K  A  K      ++    
Sbjct: 121 ALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPE 180
Query: 196 VTENPKRHRRI 206
           V E+    R +
Sbjct: 181 VLEDNDYGRAV 191

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G     F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 143 LDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 202
Query: 281 MLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ ++ F  +LM+    P  +G       L+  LL+KDP +RL G    A
Sbjct: 203 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAK--SLLSGLLKKDPKQRLGGGSEDA 260
Query: 337 CEIKEHVFFKGVRWD-LLTDVLRPPFIPS 364
            EI +H FF G+ W  +    L PPF P 
Sbjct: 261 KEIMQHRFFAGIVWQHVYEKKLSPPFKPQ 289

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++  + LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 9   MNEFEYLKLLGKGTFGKVILVKEKA---TGRY-YAMKILKKEVIVAKDEVAHTLT-ENRV 63
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ 
Sbjct: 64  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERVFSEDRARFYGAEIVS 121
Query: 137 AIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           A+++LH+   + YRDLK EN+++ + GH+ +TDF L +  +K  A  K      ++    
Sbjct: 122 ALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPE 181
Query: 196 VTENPKRHRRI 206
           V E+    R +
Sbjct: 182 VLEDNDYGRAV 192

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G     F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 144 LDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 203
Query: 281 MLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ ++ F  +LM+    P  +G       L+  LL+KDP +RL G    A
Sbjct: 204 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAK--SLLSGLLKKDPKQRLGGGSEDA 261
Query: 337 CEIKEHVFFKGVRWD-LLTDVLRPPFIPS 364
            EI +H FF G+ W  +    L PPF P 
Sbjct: 262 KEIMQHRFFAGIVWQHVYEKKLSPPFKPQ 290

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++  + LK+LGKG  G V LV ++A   T R  +A+K++ K  + AK E       E RV
Sbjct: 7   MNEFEYLKLLGKGTFGKVILVKEKA---TGRY-YAMKILKKEVIVAKDEVAHTLT-ENRV 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L    HPFL  L  S +T + L + + Y  GG+L    +   +RVFS    RFY +EI+ 
Sbjct: 62  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERVFSEDRARFYGAEIVS 119
Query: 137 AIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           A+++LH+   + YRDLK EN+++ + GH+ +TDF L +  +K  A  K      ++    
Sbjct: 120 ALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPE 179
Query: 196 VTENPKRHRRI 206
           V E+    R +
Sbjct: 180 VLEDNDYGRAV 190

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L K    +++     ++   +G     F GT EY++PEV+  + +  AVDWW LG++ YE
Sbjct: 142 LDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYE 201
Query: 281 MLYGTTPFRGKNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL-GYLRGA 336
           M+ G  PF  ++ ++ F  +LM+    P  +G       L+  LL+KDP +RL G    A
Sbjct: 202 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAK--SLLSGLLKKDPKQRLGGGSEDA 259
Query: 337 CEIKEHVFFKGVRWD-LLTDVLRPPFIPS 364
            EI +H FF G+ W  +    L PPF P 
Sbjct: 260 KEIMQHRFFAGIVWQHVYEKKLSPPFKPQ 288

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 29  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 83
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 84  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 141
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 142 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 179

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 187 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 246
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 247 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 299

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 14  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 68
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 69  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 126
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 127 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 164

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 172 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 231
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 232 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 284

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 84
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 85  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 142
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 143 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 180

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 188 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 247
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 248 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 300

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 9   EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 63
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 64  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 121
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 122 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 159

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 167 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 226
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 227 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 279

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 7   EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 61
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 62  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 119
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 120 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 157

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 165 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 224
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 225 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 277

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 62
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 63  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 120
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 121 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 158

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 166 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 225
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 226 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 278

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 86
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 87  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 144
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 145 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 182

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F  ++  
Sbjct: 190 RANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKL 249
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 250 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 302

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 10  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 64
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 65  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 122
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 123 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 160

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 168 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 227
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 228 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 280

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 84
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 85  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 142
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 143 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 180

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 188 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 247
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 248 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 300

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 86
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 87  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 144
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 145 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 182

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 190 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 249
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 250 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 302

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 86
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 87  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 144
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 145 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 182

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 190 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 249
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 250 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 302

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 86
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 87  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 144
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 145 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 182

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F  ++  
Sbjct: 190 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKL 249
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 250 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 302

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 84
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 85  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 142
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 143 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 180

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N+FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 188 RANAFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 247
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 248 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 300

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 32  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 86
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 87  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 144
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 145 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 182

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 190 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 249
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 250 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 302

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 33  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 87
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 88  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 145
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 146 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 183

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 191 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 250
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 251 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 303

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 35  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 89
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 90  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 147
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 148 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 185

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 193 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 252
Query: 304 TPEF-VGQRTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F         DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 253 EYDFPAAFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 305

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 37  EDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 91
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL    + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 92  SRLDHPFFVKLYFCFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 149
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 150 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 187

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 195 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 254
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 255 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 307

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +++ ++   +++F GT EY++PEV+    ++  VDWW LG + YEMLYG  PF  +N  E
Sbjct: 187 KENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE 246
Query: 296 TFRNVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW-DLL 353
            + N+L K  +     T +   L++ LL+KD  KRLG      EIK HVFF  + W DL+
Sbjct: 247 MYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLI 306
Query: 354 TDVLRPPFIPSRE-ENDL 370
              + PPF P+    NDL
Sbjct: 307 NKKITPPFNPNVSGPNDL 324

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  T  L  + A   T+R  +A+K+++K  +  +++     R E  V+
Sbjct: 30  EDFKFGKILGEGSFSTTVLARELA---TSR-EYAIKILEKRHIIKENKVPYVTR-ERDVM 84
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 85  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 142
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L
Sbjct: 143 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL 180

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+N FVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ ++  
Sbjct: 188 RANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKL 247
Query: 304 TPEFVGQ-RTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLL 353
             +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V W+ L
Sbjct: 248 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 300

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 151/352 (42%), Gaps = 76/352 (21%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L +++ +  K+LGKG+ G VFL   +  +      FA+K + K  +    + E     E 
Sbjct: 15  LKIEDFELHKMLGKGSFGKVFLAEFKKTNQF----FAIKALKKDVVLMDDDVEC-TMVEK 69
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           RVLS                   LAW  P+                          L+ +
Sbjct: 70  RVLS-------------------LAWEHPF--------------------------LTHM 84
Query: 135 ICAIEHLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            C  +   N+      L   +++   QS H     FDLSR     T +  + +   +F  
Sbjct: 85  FCTFQTKENLFFVMEYLNGGDLMYHIQSCH----KFDLSR----ATFYAAEIILGLQF-- 134
Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                     + I+ R    L  +   L K    +++     +++     ++N F GT +
Sbjct: 135 -------LHSKGIVYR---DLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPD 184
Query: 254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRT 312
           Y++PE++ G  +  +VDWW+ G+L YEML G +PF G++ +E F ++ M  P +      
Sbjct: 185 YIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEK 244
Query: 313 ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLT-DVLRPPFIP 363
              DL+ +L  ++P KRLG +RG  +I++H  F+ + W+ L    + PPF P
Sbjct: 245 EAKDLLVKLFVREPEKRLG-VRG--DIRQHPLFREINWEELERKEIDPPFRP 293

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 150/352 (42%), Gaps = 76/352 (21%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L +++    K+LGKG+ G VFL   +  +      FA+K + K  +    + E     E 
Sbjct: 14  LKIEDFILHKMLGKGSFGKVFLAEFKKTNQF----FAIKALKKDVVLMDDDVEC-TMVEK 68
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           RVLS                   LAW  P+                          L+ +
Sbjct: 69  RVLS-------------------LAWEHPF--------------------------LTHM 83
Query: 135 ICAIEHLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            C  +   N+      L   +++   QS H     FDLSR     T +  + +   +F  
Sbjct: 84  FCTFQTKENLFFVMEYLNGGDLMYHIQSCH----KFDLSR----ATFYAAEIILGLQF-- 133
Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                     + I+ R    L  +   L K    +++     +++     ++N F GT +
Sbjct: 134 -------LHSKGIVYR---DLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPD 183
Query: 254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRT 312
           Y++PE++ G  +  +VDWW+ G+L YEML G +PF G++ +E F ++ M  P +      
Sbjct: 184 YIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEK 243
Query: 313 ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLT-DVLRPPFIP 363
              DL+ +L  ++P KRLG +RG  +I++H  F+ + W+ L    + PPF P
Sbjct: 244 EAKDLLVKLFVREPEKRLG-VRG--DIRQHPLFREINWEELERKEIDPPFRP 292

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         FA+K++DK  +    + E     E R+
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNH----FAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         FA+K++DK  +    + E     E R+
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNH----FAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         FA+K++DK  +    + E     E R+
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNH----FAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    E E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKEIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN++I Q G++ +TDF L++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGLAKRVKGRT 195

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    E E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKEIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN++I Q G++ +TDF L++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVKGRT 195

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 95
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 151
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 152 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 196

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 95
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 151
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 152 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 196

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 95
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 151
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 152 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 196

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +I  H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIXNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 61  LDQFERIKTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 115
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 171
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 172 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 216

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 215 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 274
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 275 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 334
Query: 361 FIP 363
           FIP
Sbjct: 335 FIP 337

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 33  LDQFERIKTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 87
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 88  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQI 143
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 144 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 188

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 187 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 246
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 247 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 306
Query: 361 FIP 363
           FIP
Sbjct: 307 FIP 309

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 95
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEM----FSHLRRIGRFSEPHARFYAAQI 151
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 152 VLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRT 196

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 94
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 95  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQ 150
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 196

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 94
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 95  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQ 150
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 196

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+ +  GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 26  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 79
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 80  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQ 135
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 136 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 181

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+ +  GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 180 RTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAP 299
Query: 361 FIP 363
           FIP
Sbjct: 300 FIP 302

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 94
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 95  ILQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEM----FSHLRRIGRFSEPHARFYAAQ 150
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRT 196

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 7/163 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + +K LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 33  LDQFERIKTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 87
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  ++ PFL KL  S + +  L   + Y PGG++     ++  R   P   RFY ++I+ 
Sbjct: 88  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM-FSHLRRIGRFXEPHA-RFYAAQIVL 145
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 146 TFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 188

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 187 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 246
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 247 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 306
Query: 361 FIP 363
           FIP
Sbjct: 307 FIP 309

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 94
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 95  ILQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEM----FSHLRRIGRFSEPHARFYAAQ 150
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRT 196

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L +DN + +++LGKG+ G V L   +         +A+KV+ K  +    + E     E 
Sbjct: 20  LGIDNFEFIRVLGKGSFGKVMLARVKETGDL----YAVKVLKKDVILQDDDVECTMT-EK 74
Query: 75  RVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           R+LS   +HPFL +L    +T + L + + +  GGDL  + + Q  R F  +  RFY +E
Sbjct: 75  RILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAAE 132
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           II A+  LH+ GI YRDLK +N+L+   GH  L DF + +
Sbjct: 133 IISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCK 172

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
           L      +++     ++   NG  + +F GT +Y++PE+++   +  AVDWWA+G+L YE
Sbjct: 157 LDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYE 216
Query: 281 MLYGTTPFRGKNRKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGAC 337
           ML G  PF  +N  + F  +L   +  P ++ +    T +++  + K+P  RLG L    
Sbjct: 217 MLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDA--TGILKSFMTKNPTMRLGSLTQGG 274
Query: 338 E--IKEHVFFKGVRWDLLTD-VLRPPFIP---SREE 367
           E  I  H FFK + W  L    + PPF P   SRE+
Sbjct: 275 EHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSRED 310

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRT 195

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++ PFL KL  S + +  L   + Y PGG++     ++  R   P   RFY ++I+
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM-FSHLRRIGRFXEPHA-RFYAAQIV 151
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
              E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 152 LTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++ PFL KL  S + +  L   + Y PGG++     ++  R   P   RFY ++I+
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM-FSHLRRIGRFXEPHA-RFYAAQIV 151
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
              E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 152 LTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 94
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++ PFL KL  S + +  L   + Y PGG++     ++  R   P   RFY ++I+
Sbjct: 95  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM-FSHLRRIGRFXEPHA-RFYAAQIV 152
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
              E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 153 LTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 196

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 94
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++ PFL KL  S + +  L   + Y PGG++     ++  R   P   RFY ++I+
Sbjct: 95  ILQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEM-FSHLRRIGRFXEPHA-RFYAAQIV 152
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
              E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 153 LTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRT 196

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K +G G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGGD+    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYMPGGDM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ + DF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRT 195

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K +G G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGGD+    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYMPGGDM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ + DF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRT 195

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           ++ D+ + L+ +GKG+ G V +V         +  +A+K ++K     ++E  R    E+
Sbjct: 12  VNFDHFEILRAIGKGSFGKVCIVQKN----DTKKMYAMKYMNKQKCVERNEV-RNVFKEL 66
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-FSPSVIRFYLSE 133
           +++  L HPFL  L  S + +E +   V    GGDL   RY     V F    ++ ++ E
Sbjct: 67  QIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDL---RYHLQQNVHFKEETVKLFICE 123
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           ++ A+++L N  I +RD+KP+NIL+ + GHV +TDF+++  L ++T
Sbjct: 124 LVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 15/129 (11%)
Query: 247 SFVGTEEYVSPEVV---RGDGHEFAVDWWALGILTYEMLYGTTPFR------GKNRKETF 297
           +  GT+ Y++PE+    +G G+ FAVDWW+LG+  YE+L G  P+        K    TF
Sbjct: 173 TMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTF 232
Query: 298 RNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD-LLTDV 356
              ++  P    Q   +  L+++LLE +P +R   L    +++   +   + WD +    
Sbjct: 233 ETTVVTYPSAWSQE--MVSLLKKLLEPNPDQRFSQL---SDVQNFPYMNDINWDAVFQKR 287
Query: 357 LRPPFIPSR 365
           L P FIP++
Sbjct: 288 LIPGFIPNK 296

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  ++ PFL KL  S + +  L   + Y PGG++     ++  R   P   RFY ++I+
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEM-FSHLRRIGRFXEPHA-RFYAAQIV 151
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
              E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 152 LTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKGRT 195

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESG----NHYAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESG----NHYAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 41  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 95
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 151
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 152 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 196

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L Y+M  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADEPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++P ++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPAIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  K  G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKAFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L  G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLPNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT E ++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN++I Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLIIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 17/138 (12%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR--------GKNR 293
           G+ ++ F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF          +N 
Sbjct: 175 GDTTSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 234
Query: 294 KETFRNVLM----KTPEFVGQRTALTDLIQRLLEKDPVKRLGYL--RGACEIKEHVFFKG 347
           ++    V++    + P  +  + A   +++  L KDP +RLG L   G  +I+ H FF+ 
Sbjct: 235 EDYLFQVILEKQIRIPRSMSVKAA--SVLKSFLNKDPKERLGCLPQTGFADIQGHPFFRN 292
Query: 348 VRWDLLTD-VLRPPFIPS 364
           V WD++    + PPF P+
Sbjct: 293 VDWDMMEQKQVVPPFKPN 310

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 9/158 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L + + L+ LG G+ G V L+  R      R  +A+KV+ K  +    + E     E  +
Sbjct: 5   LQDFQILRTLGTGSFGRVHLIRSRH---NGRY-YAMKVLKKEIVVRLKQVEHTND-ERLM 59
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEII 135
           LS ++HPF+ ++ G+ +  + +   + Y  GG+L ++LR  Q    F   V +FY +E+ 
Sbjct: 60  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQR---FPNPVAKFYAAEVC 116
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            A+E+LH+  I YRDLKPENIL+ ++GH+ +TDF  ++
Sbjct: 117 LALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAK 154

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---MKTPE 306
           GT +Y++PEVV    +  ++DWW+ GIL YEML G TPF   N  +T+  +L   ++ P 
Sbjct: 165 GTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP 224
Query: 307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACE-IKEHVFFKGVRWD-LLTDVLRPPFIPS 364
           F  +   + DL+ RL+ +D  +RLG L+   E +K H +FK V W+ LL+  +  P+ P 
Sbjct: 225 FFNE--DVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPP 282
Query: 365 REE 367
            ++
Sbjct: 283 IQQ 285

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 61  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 115
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 171
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++
Sbjct: 172 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 210

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE 306
           +  GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++     
Sbjct: 218 TLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVR 277
Query: 307 FVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPPFIP 363
           F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  PFIP
Sbjct: 278 FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIP 337

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  ++ PFL KL  S + +  L   + Y  GG++     ++  R   P   RFY ++I+ 
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM-FSHLRRIGRFXEPHA-RFYAAQIVL 152
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 153 TFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K +G G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ + DF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRT 195

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 61  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 115
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  ++ PFL KL  S + +  L   + Y  GG++     ++  R   P   RFY ++I+ 
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM-FSHLRRIGRFXEPHA-RFYAAQIVL 173
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 174 TFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 216

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 215 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 274
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 275 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 334
Query: 361 FIP 363
           FIP
Sbjct: 335 FIP 337

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 35  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 89
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  ++ PFL KL  S + +  L   + Y  GG++     ++  R   P   RFY ++I+ 
Sbjct: 90  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM-FSHLRRIGRFXEPHA-RFYAAQIVL 147
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 148 TFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 190

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 189 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 248
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 249 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 308
Query: 361 FIP 363
           FIP
Sbjct: 309 FIP 311

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  ++ PFL KL  S + +  L   + Y  GG++     ++  R   P   RFY ++I+ 
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM-FSHLRRIGRFXEPHA-RFYAAQIVL 152
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 153 TFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  F+    RFY ++I
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFAEPHARFYAAQI 150
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 151 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 94
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  ++ PFL KL  S + +  L   + Y  GG++     ++  R   P   RFY ++I+ 
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM-FSHLRRIGRFXEPHA-RFYAAQIVL 152
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 153 TFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 17  LDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           LD  + +K LG G+ G V LV H    +      +A+K++DK  +    + E     E R
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNH-----YAMKILDKQKVVKLKQIEHTLN-EKR 93
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSE 133
           +L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 194 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 254 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAIYQRKVEAP 313
Query: 361 FIP 363
           FIP
Sbjct: 314 FIP 316

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD    +K LG G+ G V LV  + +       +A+K++DK  +    + E     E R+
Sbjct: 27  LDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 81
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
           L  ++ PFL KL  S + +  L   + Y  GG++    +    R+  FS    RFY ++I
Sbjct: 82  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM----FSHLRRIGRFSEPHARFYAAQI 137
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI + G++ +TDF  ++ +  +T
Sbjct: 138 VLTFEYLHSLDLIYRDLKPENLLIDEQGYIQVTDFGFAKRVKGRT 182

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 361 FIP 363
           FIP
Sbjct: 301 FIP 303

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           LD  + ++ LG G+ G V LV  +         +A+K++DK  +    + E     E R+
Sbjct: 41  LDQFERIRTLGTGSFGRVMLVKHKETGNH----YAMKILDKQKVVKLKQIEHTLN-EKRI 95
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV--FSPSVIRFYLSEI 134
              ++ PFL KL  S + +  L   + Y PGG++    +    R+  FS    RFY ++I
Sbjct: 96  QQAVNFPFLVKLEFSFKDNSNLYMVLEYAPGGEM----FSHLRRIGRFSEPHARFYAAQI 151
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +   E+LH++ + YRDLKPEN+LI Q G++ + DF  ++ +  +T
Sbjct: 152 VLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKGRT 196

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R+    GT EY++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++  
Sbjct: 195 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 254
Query: 304 TPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRW-DLLTDVLRPP 360
              F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  P
Sbjct: 255 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 314
Query: 361 FIP 363
           FIP
Sbjct: 315 FIP 317

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 17/138 (12%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR--------GKNR 293
           G+ +++F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF          +N 
Sbjct: 207 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 266
Query: 294 KETFRNVLM----KTPEFVGQRTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKG 347
           ++    V++    + P  +  + A   +++  L KDP +RLG     G  +I+ H FF+ 
Sbjct: 267 EDYLFQVILEKQIRIPRSLSVKAA--SVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN 324
Query: 348 VRWDLLTD-VLRPPFIPS 364
           V WD++    + PPF P+
Sbjct: 325 VDWDMMEQKQVVPPFKPN 342

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 17/138 (12%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR--------GKNR 293
           G+ ++ F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF          +N 
Sbjct: 160 GDTTSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 219
Query: 294 KETFRNVLM----KTPEFVGQRTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKG 347
           ++    V++    + P  +  + A   +++  L KDP +RLG     G  +I+ H FF+ 
Sbjct: 220 EDYLFQVILEKQIRIPRSLSVKAA--SVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN 277
Query: 348 VRWDLLTD-VLRPPFIPS 364
           V WD++    + PPF P+
Sbjct: 278 VDWDMMEQKQVVPPFKPN 295

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 17/138 (12%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR--------GKNR 293
           G+ ++ F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF          +N 
Sbjct: 164 GDTTSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 223
Query: 294 KETFRNVLM----KTPEFVGQRTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKG 347
           ++    V++    + P  +  + A   +++  L KDP +RLG     G  +I+ H FF+ 
Sbjct: 224 EDYLFQVILEKQIRIPRSLSVKAA--SVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN 281
Query: 348 VRWDLLTD-VLRPPFIPS 364
           V WD++    + PPF P+
Sbjct: 282 VDWDMMEQKQVVPPFKPN 299

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 10/167 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L +++    +I+G+G  G V+    R AD      +A+K +DK  +  K + E  A  E 
Sbjct: 185 LTMNDFSVHRIIGRGGFGEVYGC--RKADTGKM--YAMKCLDKKRIKMK-QGETLALNER 239
Query: 75  RVLSRLSH---PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            +LS +S    PF+  +  +  T + L++ +    GGDL+   +     VFS + +RFY 
Sbjct: 240 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHY--HLSQHGVFSEADMRFYA 297
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           +EII  +EH+HN  + YRDLKP NIL+ + GHV ++D  L+ +  KK
Sbjct: 298 AEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 344

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 243 ERSNSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFR---GKNRKETFR 298
           ++ ++ VGT  Y++PEV+ +G  ++ + DW++LG + +++L G +PFR    K++ E  R
Sbjct: 344 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR 403
Query: 299 NVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLL-TD 355
             L    E     +  L  L++ LL++D  +RLG L RGA E+KE  FF+ + W ++   
Sbjct: 404 MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 463
Query: 356 VLRPPFIPSREE 367
              PP IP R E
Sbjct: 464 KYPPPLIPPRGE 475

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 10/167 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L +++    +I+G+G  G V+    R AD      +A+K +DK  +  K + E  A  E 
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGC--RKADTGKM--YAMKCLDKKRIKMK-QGETLALNER 240
Query: 75  RVLSRLSH---PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            +LS +S    PF+  +  +  T + L++ +    GGDL+   +     VFS + +RFY 
Sbjct: 241 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHY--HLSQHGVFSEADMRFYA 298
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           +EII  +EH+HN  + YRDLKP NIL+ + GHV ++D  L+ +  KK
Sbjct: 299 AEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 345

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 243 ERSNSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFRG---KNRKETFR 298
           ++ ++ VGT  Y++PEV+ +G  ++ + DW++LG + +++L G +PFR    K++ E  R
Sbjct: 345 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR 404
Query: 299 NVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLL-TD 355
             L    E     +  L  L++ LL++D  +RLG L RGA E+KE  FF+ + W ++   
Sbjct: 405 MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 464
Query: 356 VLRPPFIPSREE 367
              PP IP R E
Sbjct: 465 KYPPPLIPPRGE 476

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 10/167 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L +++    +I+G+G  G V+    R AD      +A+K +DK  +  K + E  A  E 
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGC--RKADTGKM--YAMKCLDKKRIKMK-QGETLALNER 240
Query: 75  RVLSRLSH---PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            +LS +S    PF+  +  +  T + L++ +    GGDL+   +     VFS + +RFY 
Sbjct: 241 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHY--HLSQHGVFSEADMRFYA 298
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           +EII  +EH+HN  + YRDLKP NIL+ + GHV ++D  L+ +  KK
Sbjct: 299 AEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 345

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 243 ERSNSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFR---GKNRKETFR 298
           ++ ++ VGT  Y++PEV+ +G  ++ + DW++LG + +++L G +PFR    K++ E  R
Sbjct: 345 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR 404
Query: 299 NVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLL-TD 355
             L    E     +  L  L++ LL++D  +RLG L RGA E+KE  FF+ + W ++   
Sbjct: 405 MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 464
Query: 356 VLRPPFIPSREE 367
              PP IP R E
Sbjct: 465 KYPPPLIPPRGE 476

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 10/167 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L +++    +I+G+G  G V+    R AD      +A+K +DK  +  K + E  A  E 
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGC--RKADTGKM--YAMKCLDKKRIKMK-QGETLALNER 240
Query: 75  RVLSRLSH---PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            +LS +S    PF+  +  +  T + L++ +    GGDL+   +     VFS + +RFY 
Sbjct: 241 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHY--HLSQHGVFSEADMRFYA 298
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           +EII  +EH+HN  + YRDLKP NIL+ + GHV ++D  L+ +  KK
Sbjct: 299 AEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 345

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 243 ERSNSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFR---GKNRKETFR 298
           ++ ++ VGT  Y++PEV+ +G  ++ + DW++LG + +++L G +PFR    K++ E  R
Sbjct: 345 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR 404
Query: 299 NVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLL-TD 355
             L    E     +  L  L++ LL++D  +RLG L RGA E+KE  FF+ + W ++   
Sbjct: 405 MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 464
Query: 356 VLRPPFIPSREE 367
              PP IP R E
Sbjct: 465 KYPPPLIPPRGE 476

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK---ETFR 298
           G+     VGT  Y++PEVV+ + + F+ DWWALG L YEM+ G +PF+ + +K   E   
Sbjct: 339 GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVE 398
Query: 299 NVLMKTPEFVGQRTA--LTDLIQRLLEKDPVKRLGYLRGAC-EIKEHVFFKGVRWDLL-T 354
            ++ + PE   +R +     L  +LL KDP +RLG   G+  E+KEH  FK + +  L  
Sbjct: 399 RLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGA 458
Query: 355 DVLRPPFIP 363
            +L PPF P
Sbjct: 459 GMLEPPFKP 467

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK---ETFR 298
           G+     VGT  Y++PEVV+ + + F+ DWWALG L YEM+ G +PF+ + +K   E   
Sbjct: 339 GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVE 398
Query: 299 NVLMKTPEFVGQRTA--LTDLIQRLLEKDPVKRLGYLRGAC-EIKEHVFFKGVRWDLL-T 354
            ++ + PE   +R +     L  +LL KDP +RLG   G+  E+KEH  FK + +  L  
Sbjct: 399 RLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGA 458
Query: 355 DVLRPPFIP 363
            +L PPF P
Sbjct: 459 GMLEPPFKP 467

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 7/128 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +G  +  F GT +Y++PE++    +  +VDWWA G+L YEML G  PF G++  E F+++
Sbjct: 495 DGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSI 554
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWDLLT-D 355
           +   +  P+ + +      + + L+ K P KRLG    G  +IKEH FF+ + W+ L   
Sbjct: 555 MEHNVAYPKSMSKEAVA--ICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERK 612
Query: 356 VLRPPFIP 363
            ++PP+ P
Sbjct: 613 EIQPPYKP 620

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 7/128 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +G  +  F GT +Y++PE++    +  +VDWWA G+L YEML G  PF G++  E F+++
Sbjct: 173 DGVTTREFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSI 232
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWDLLTD- 355
           +   +  P+ + +      + + L+ K P KRLG    G  +++EH FF+ + W+ L + 
Sbjct: 233 MEHNVSYPKSLSKEA--VSICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENR 290
Query: 356 VLRPPFIP 363
            ++PPF P
Sbjct: 291 EIQPPFKP 298

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 228 RVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTP 287
           +++     +++  +G  +  F GT +Y++PE++    +  +VDWWA G+L YEML G  P
Sbjct: 161 KIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAP 220
Query: 288 FRGKNRKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHV 343
           F G++  E F++++   +  P+ + +      + + L+ K P KRLG    G  +IKEH 
Sbjct: 221 FEGEDEDELFQSIMEHNVAYPKSMSKEAVA--ICKGLMTKHPGKRLGCGPEGERDIKEHA 278
Query: 344 FFKGVRWDLLT-DVLRPPFIP 363
           FF+ + W+ L    ++PP+ P
Sbjct: 279 FFRYIDWEKLERKEIQPPYKP 299

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ + LK++G+GA G V +V  + AD      FA+K+++K  +  + E     R E  VL
Sbjct: 74  EDFEILKVIGRGAFGEVAVVKLKNADKV----FAMKILNKWEMLKRAETAC-FREERDVL 128
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
                 ++  L  + + D  L   + Y  GGDL  L  K  DR+    + RFYL+E++ A
Sbjct: 129 VNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRL-PEEMARFYLAEMVIA 187
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           I+ +H +   +RD+KP+NIL+  +GH+ L DF
Sbjct: 188 IDSVHQLHYVHRDIKPDNILMDMNGHIRLADF 219

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 240 DNGERSNSFVGTEEYVSPEVVR----GDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           D   +S+  VGT +Y+SPE+++    G G +    DWW+LG+  YEMLYG TPF  ++  
Sbjct: 228 DGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV 287
Query: 295 ETFRNVLMKTP--EFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ET+  ++      +F  Q T ++    DLI+RL+      RLG   G  + K+H FF G+
Sbjct: 288 ETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSRE-HRLGQ-NGIEDFKKHPFFSGI 345
Query: 349 RWDLLTDVLRPPFIP 363
            WD + +    P+IP
Sbjct: 346 DWDNIRNC-EAPYIP 359

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 76/317 (23%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + +K LG+G+ G V L    A   T     ALK+++K  L AK + + R   EI  
Sbjct: 12  IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVL-AKSDMQGRIEREISY 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L HP + KL   +++ + +   + Y      + +   Q D++      RF+  +II 
Sbjct: 67  LRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIV--QRDKMSEQEARRFF-QQIIS 123
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+ H   I +RDLKPEN+L+ +  +V + DF LS N++    F K S  +  +     
Sbjct: 124 AVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS-NIMTDGNFLKTSCGSPNY----- 177
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                           A PE  +G                               + Y  
Sbjct: 178 ----------------AAPEVISG-------------------------------KLYAG 190
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV---LMKTPEFVGQRTA 313
           PE          VD W+ G++ Y ML    PF  ++    F+N+   +   P+F+    A
Sbjct: 191 PE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAA 240
Query: 314 LTDLIQRLLEKDPVKRL 330
              LI+R+L  +P+ R+
Sbjct: 241 --GLIKRMLIVNPLNRI 255

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 76/317 (23%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + +K LG+G+ G V L    A   T     ALK+++K  L AK + + R   EI  
Sbjct: 13  IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVL-AKSDMQGRIEREISY 67
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L HP + KL   +++ + +   + Y      + +   Q D++      RF+  +II 
Sbjct: 68  LRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIV--QRDKMSEQEARRFF-QQIIS 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+ H   I +RDLKPEN+L+ +  +V + DF LS N++    F K S  +  +     
Sbjct: 125 AVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS-NIMTDGNFLKTSCGSPNY----- 178
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                           A PE  +G                               + Y  
Sbjct: 179 ----------------AAPEVISG-------------------------------KLYAG 191
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV---LMKTPEFVGQRTA 313
           PE          VD W+ G++ Y ML    PF  ++    F+N+   +   P+F+    A
Sbjct: 192 PE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAA 241
Query: 314 LTDLIQRLLEKDPVKRL 330
              LI+R+L  +P+ R+
Sbjct: 242 --GLIKRMLIVNPLNRI 256

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 76/317 (23%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + +K LG+G+ G V L    A   T     ALK+++K  L AK + + R   EI  
Sbjct: 7   IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVL-AKSDMQGRIEREISY 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L HP + KL   +++ + +   + Y      + +   Q D++      RF+  +II 
Sbjct: 62  LRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIV--QRDKMSEQEARRFF-QQIIS 118
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+ H   I +RDLKPEN+L+ +  +V + DF LS N++    F K S  +  +     
Sbjct: 119 AVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS-NIMTDGNFLKTSCGSPNY----- 172
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                           A PE  +G                               + Y  
Sbjct: 173 ----------------AAPEVISG-------------------------------KLYAG 185
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV---LMKTPEFVGQRTA 313
           PE          VD W+ G++ Y ML    PF  ++    F+N+   +   P+F+    A
Sbjct: 186 PE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAA 235
Query: 314 LTDLIQRLLEKDPVKRL 330
              LI+R+L  +P+ R+
Sbjct: 236 --GLIKRMLIVNPLNRI 250

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 76/317 (23%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + +K LG+G+ G V L    A   T     ALK+++K  L AK + + R   EI  
Sbjct: 3   IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVL-AKSDMQGRIEREISY 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L HP + KL   +++ + +   + Y      + +   Q D++      RF+  +II 
Sbjct: 58  LRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIV--QRDKMSEQEARRFF-QQIIS 114
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
           A+E+ H   I +RDLKPEN+L+ +  +V + DF LS N++    F K S  +  +     
Sbjct: 115 AVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS-NIMTDGNFLKTSCGSPNY----- 168
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                           A PE  +G                               + Y  
Sbjct: 169 ----------------AAPEVISG-------------------------------KLYAG 181
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV---LMKTPEFVGQRTA 313
           PE          VD W+ G++ Y ML    PF  ++    F+N+   +   P+F+    A
Sbjct: 182 PE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAA 231
Query: 314 LTDLIQRLLEKDPVKRL 330
              LI+R+L  +P+ R+
Sbjct: 232 --GLIKRMLIVNPLNRI 246

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 79/171 (46%), Gaps = 29/171 (16%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFA-------VDWWALGILTYEMLYGTTPFRGKN 292
           D   RS   VGT +Y+SPE+++  G            DWWALG+  YEM YG TPF   +
Sbjct: 215 DGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS 274
Query: 293 RKETFRNVLMKTPEFV------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             ET+  ++             G      D IQRLL   P  RLG   GA + + H FF 
Sbjct: 275 TAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLCP-PETRLGR-GGAGDFRTHPFFF 332
Query: 347 GVRWDLLTDVLRPPFIPSREEN------DLTEKAM----SGGG---VDIRE 384
           G+ WD L D + PPF P  E        DL E  +    SGGG    DIRE
Sbjct: 333 GLDWDGLRDSV-PPFTPDFEGATDTCNFDLVEDGLTAMVSGGGETLSDIRE 382

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 127/316 (40%), Gaps = 85/316 (26%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LGKG+ G V    DR      +  +A+KV++K++  AK++       E+ +L +L HP 
Sbjct: 29  MLGKGSFGEVLKCKDR----ITQQEYAVKVINKAS--AKNKDTSTILREVELLKKLDHPN 82
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           + KL   LE             GG+L   +++ K+    FS       + ++   I ++H
Sbjct: 83  IMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR----FSEHDAARIIKQVFSGITYMH 138
Query: 143 NMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
              I +RDLKPENIL+    +   + + DF LS      T F+               +N
Sbjct: 139 KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS------TCFQ---------------QN 177
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
            K   RI T +                                           Y++PEV
Sbjct: 178 TKMKDRIGTAY-------------------------------------------YIAPEV 194
Query: 260 VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTAL 314
           +RG   E   D W+ G++ Y +L GT PF GKN  +  + V         P++       
Sbjct: 195 LRGTYDE-KCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDA 253
Query: 315 TDLIQRLLEKDPVKRL 330
            DLI+++L   P  R+
Sbjct: 254 KDLIRKMLTFHPSLRI 269

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 126/316 (39%), Gaps = 85/316 (26%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LGKG+ G V    DR         +A+KV++K++  AK++       E+ +L +L HP 
Sbjct: 29  MLGKGSFGEVLKCKDRITQQ----EYAVKVINKAS--AKNKDTSTILREVELLKKLDHPN 82
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           + KL   LE             GG+L   +++ K+    FS       + ++   I ++H
Sbjct: 83  IMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR----FSEHDAARIIKQVFSGITYMH 138
Query: 143 NMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
              I +RDLKPENIL+    +   + + DF LS      T F+               +N
Sbjct: 139 KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS------TCFQ---------------QN 177
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
            K   RI T +                                           Y++PEV
Sbjct: 178 TKMKDRIGTAY-------------------------------------------YIAPEV 194
Query: 260 VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTAL 314
           +RG   E   D W+ G++ Y +L GT PF GKN  +  + V         P++       
Sbjct: 195 LRGTYDE-KCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDA 253
Query: 315 TDLIQRLLEKDPVKRL 330
            DLI+++L   P  R+
Sbjct: 254 KDLIRKMLTFHPSLRI 269

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 126/316 (39%), Gaps = 85/316 (26%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LGKG+ G V    DR         +A+KV++K++  AK++       E+ +L +L HP 
Sbjct: 29  MLGKGSFGEVLKCKDRITQQ----EYAVKVINKAS--AKNKDTSTILREVELLKKLDHPN 82
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           + KL   LE             GG+L   +++ K+    FS       + ++   I ++H
Sbjct: 83  IMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR----FSEHDAARIIKQVFSGITYMH 138
Query: 143 NMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
              I +RDLKPENIL+    +   + + DF LS      T F+               +N
Sbjct: 139 KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS------TCFQ---------------QN 177
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
            K   RI T +                                           Y++PEV
Sbjct: 178 TKMKDRIGTAY-------------------------------------------YIAPEV 194
Query: 260 VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTAL 314
           +RG   E   D W+ G++ Y +L GT PF GKN  +  + V         P++       
Sbjct: 195 LRGTYDE-KCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDA 253
Query: 315 TDLIQRLLEKDPVKRL 330
            DLI+++L   P  R+
Sbjct: 254 KDLIRKMLTFHPSLRI 269

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 121/308 (39%), Gaps = 76/308 (24%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG+G+ G V L    A     +   ALK + +  L  K +   R   EI  L  L HP +
Sbjct: 17  LGEGSFGKVKL----ATHYKTQQKVALKFISRQLL-KKSDMHMRVEREISYLKLLRHPHI 71
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KL   + T   +   + Y  GG+L    Y    +  +    R +  +IICAIE+ H   
Sbjct: 72  IKLYDVITTPTDIVMVIEYA-GGEL--FDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHK 128
Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRR 205
           I +RDLKPEN+L+  + +V + DF LS N++    F K S  +  +              
Sbjct: 129 IVHRDLKPENLLLDDNLNVKIADFGLS-NIMTDGNFLKTSCGSPNY-------------- 173
Query: 206 ILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH 265
                  A PE   G                               + Y  PE       
Sbjct: 174 -------AAPEVING-------------------------------KLYAGPE------- 188
Query: 266 EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV---LMKTPEFVGQRTALTDLIQRLL 322
              VD W+ GI+ Y ML G  PF  +     F+ V   +   P+F+        LI+R++
Sbjct: 189 ---VDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLS--PGAQSLIRRMI 243
Query: 323 EKDPVKRL 330
             DP++R+
Sbjct: 244 VADPMQRI 251

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 120/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RWEIRVLSRLSHP 83
           LG G    VF V  +  + +    +A K + K    +      R     E+ +L  + HP
Sbjct: 19  LGSG----VFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 133 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 156
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 157 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 192
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 253 RRLLVKDPKKRM 264

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 14/135 (10%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRG--DG---HEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           D   +S+  VGT +Y+SPE+++   DG   +    DWW+LG+  YEMLYG TPF  ++  
Sbjct: 244 DGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV 303
Query: 295 ETFRNVLMKTP--EFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ET+  ++      +F    T ++    DLIQRL+     +RLG   G  + K+H FF+G+
Sbjct: 304 ETYGKIMNHEERFQFPSHVTDVSEEAKDLIQRLICSRE-RRLGQ-NGIEDFKKHAFFEGL 361
Query: 349 RWDLLTDVLRPPFIP 363
            W+ + + L  P+IP
Sbjct: 362 NWENIRN-LEAPYIP 375

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 125/313 (39%), Gaps = 75/313 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
            +  L    E    +   +    GG+L + L  K++    +      +L +I+  + +LH
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLAEKES---LTEEEATEFLKQILNGVYYLH 131
Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
           ++ IA+ DLKPENI++            L RN+                        PK 
Sbjct: 132 SLQIAHFDLKPENIML------------LDRNV------------------------PKP 155
Query: 203 HRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG 262
             +I+   L                            D G    +  GT E+V+PE+V  
Sbjct: 156 RIKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNY 191
Query: 263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DL 317
           +      D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D 
Sbjct: 192 EPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDF 251
Query: 318 IQRLLEKDPVKRL 330
           I+RLL KDP KR+
Sbjct: 252 IRRLLVKDPKKRM 264

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 14/135 (10%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRG--DG---HEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           D   +S+  VGT +Y+SPE+++   DG   +    DWW+LG+  YEMLYG TPF  ++  
Sbjct: 228 DGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV 287
Query: 295 ETFRNVLMKTP--EFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ET+  ++      +F    T ++    DLIQRL+     +RLG   G  + K+H FF+G+
Sbjct: 288 ETYGKIMNHEERFQFPSHVTDVSEEAKDLIQRLICSRE-RRLGQ-NGIEDFKKHAFFEGL 345
Query: 349 RWDLLTDVLRPPFIP 363
            W+ + + L  P+IP
Sbjct: 346 NWENIRN-LEAPYIP 359

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 133 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 156
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 157 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 192
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 253 RRLLVKDPKKRM 264

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 133 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 156
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 157 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 192
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 253 RRLLVKDPKKRM 264

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 133 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 156
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 157 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 192
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 253 RRLLVKDPKKRM 264

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 133 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 156
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 157 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 192
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 253 RRLLVKDPKKRM 264

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 18  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 73
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 74  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 131
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 132 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 155
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 156 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 191
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 192 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 251
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 252 RRLLVKDPKKRM 263

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 131/351 (37%), Gaps = 90/351 (25%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D D  + +K +G G  G   L+ D+ A+       A+K +++       + +   + EI 
Sbjct: 17  DSDRYELVKDIGAGNFGVARLMRDKQANELV----AVKYIERG-----EKIDENVKREII 67
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
               L HP + +    + T   LA  + Y  GG+L       N   FS    RF+  ++I
Sbjct: 68  NHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLI 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQS--GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
             + + H M +A+RDLK EN L+  S    + + DF  S+  V                 
Sbjct: 126 SGVSYAHAMQVAHRDLKLENTLLDGSPAPRLKIADFGYSKASV----------------- 168
Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                            LH+ P++  G                              T  
Sbjct: 169 -----------------LHSQPKSAVG------------------------------TPA 181
Query: 254 YVSPEVVRGDGHEFAV-DWWALGILTYEMLYGTTPFRGKNRKETFR-------NVLMKTP 305
           Y++PEV+    ++  V D W+ G+  Y ML G  PF      + FR       NV    P
Sbjct: 182 YIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIP 241
Query: 306 EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV-FFKGVRWDLLTD 355
           ++V        LI R+   DP KR+       EI+ H  F K +  DL+ D
Sbjct: 242 DYVHISPECRHLISRIFVADPAKRISI----PEIRNHEWFLKNLPADLMND 288

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 19  LGSGKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 133 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 156
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 157 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 192
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 253 RRLLVKDPKKRM 264

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 121/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 18  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 73
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +   +    GG+L    +       +      +L +I+  + +LH+
Sbjct: 74  NVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 131
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 132 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 155
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 156 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 191
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 192 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 251
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 252 RRLLVKDPKKRM 263

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 120/312 (38%), Gaps = 73/312 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--AKHEAERRARWEIRVLSRLSHP 83
           LG G    V    +++        F  K   KS+    ++ + ER    E+ +L  + HP
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER----EVSILKEIQHP 74
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L    E    +        GG+L    +       +      +L +I+  + +LH+
Sbjct: 75  NVITLHEVYENKTDVILIGELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYYLHS 132
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           + IA+ DLKPENI++            L RN+                        PK  
Sbjct: 133 LQIAHFDLKPENIML------------LDRNV------------------------PKPR 156
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L                            D G    +  GT E+V+PE+V  +
Sbjct: 157 IKIIDFGL------------------------AHKIDFGNEFKNIFGTPEFVAPEIVNYE 192
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALT-DLI 318
                 D W++G++TY +L G +PF G  ++ET  NV     EF        +AL  D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252
Query: 319 QRLLEKDPVKRL 330
           +RLL KDP KR+
Sbjct: 253 RRLLVKDPKKRM 264

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 131/351 (37%), Gaps = 90/351 (25%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D D  + +K +G G  G   L+ D+ ++       A+K +++       + +   + EI 
Sbjct: 16  DSDRYELVKDIGSGNFGVARLMRDKQSNELV----AVKYIERG-----EKIDENVKREII 66
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
               L HP + +    + T   LA  + Y  GG+L       N   FS    RF+  ++I
Sbjct: 67  NHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLI 124
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQS--GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
             + + H M + +RDLK EN L+  S    + + DF  S++ V                 
Sbjct: 125 SGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSV----------------- 167
Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                            LH+ P++  G                              T  
Sbjct: 168 -----------------LHSQPKSTVG------------------------------TPA 180
Query: 254 YVSPEVVRGDGHEFAV-DWWALGILTYEMLYGTTPFRGKNRKETFR-------NVLMKTP 305
           Y++PEV+    ++  V D W+ G+  Y ML G  PF      + FR       NV    P
Sbjct: 181 YIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIP 240
Query: 306 EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV-FFKGVRWDLLTD 355
           ++V        LI R+   DP KR+       EI+ H  F K +  DL+ D
Sbjct: 241 DYVHISPECRHLISRIFVADPAKRI----SIPEIRNHEWFLKNLPADLMND 287

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 131/351 (37%), Gaps = 90/351 (25%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D D  + +K +G G  G   L+ D+ ++       A+K +++    A +      + EI 
Sbjct: 17  DSDRYELVKDIGSGNFGVARLMRDKQSNELV----AVKYIERGEKIAAN-----VKREII 67
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
               L HP + +    + T   LA  + Y  GG+L       N   FS    RF+  ++I
Sbjct: 68  NHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLI 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQS--GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
             + + H M + +RDLK EN L+  S    + + DF  S++ V                 
Sbjct: 126 SGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSV----------------- 168
Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                            LH+ P++  G                              T  
Sbjct: 169 -----------------LHSQPKSTVG------------------------------TPA 181
Query: 254 YVSPEVVRGDGHEFAV-DWWALGILTYEMLYGTTPFRGKNRKETFR-------NVLMKTP 305
           Y++PEV+    ++  V D W+ G+  Y ML G  PF      + FR       NV    P
Sbjct: 182 YIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIP 241
Query: 306 EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV-FFKGVRWDLLTD 355
           ++V        LI R+   DP KR+       EI+ H  F K +  DL+ D
Sbjct: 242 DYVHISPECRHLISRIFVADPAKRI----SIPEIRNHEWFLKNLPADLMND 288

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++ K   +LGKG+   V+    RA         A+K++DK  ++ K    +R + E+++
Sbjct: 10  IEDFKVGNLLGKGSFAGVY----RAESIHTGLEVAIKMIDKKAMY-KAGMVQRVQNEVKI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEII 135
             +L HP + +L    E   ++   +  C  G++N  RY +N  + FS +  R ++ +II
Sbjct: 65  HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMN--RYLKNRVKPFSENEARHFMHQII 122
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             + +LH+ GI +RDL   N+L+ ++ ++ + DF L+  L
Sbjct: 123 TGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQL 162

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 193 VLPVTENPKRH--RRILT--RWLHA-------LPENKTGLKKTKSARVSPVSRRQQSFDN 241
           V P +EN  RH   +I+T   +LH+       L  +   L +  + +++      Q    
Sbjct: 106 VKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
            E+  +  GT  Y+SPE+     H    D W+LG + Y +L G  PF     K T   V+
Sbjct: 166 HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVV 225
Query: 302 M---KTPEFVGQRTALTDLIQRLLEKDPVKRL 330
           +   + P F+       DLI +LL ++P  RL
Sbjct: 226 LADYEMPSFLSIEAK--DLIHQLLRRNPADRL 255

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 129/349 (36%), Gaps = 86/349 (24%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D D  + +K +G G  G   L+ D+ ++       A+K +++       + +   + EI 
Sbjct: 17  DSDRYELVKDIGSGNFGVARLMRDKQSNELV----AVKYIERG-----EKIDENVKREII 67
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
               L HP + +    + T   LA  + Y  GG+L       N   FS    RF+  ++I
Sbjct: 68  NHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLI 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
             + + H M + +RDLK EN L+  S    L         +    + K S+         
Sbjct: 126 SGVSYCHAMQVCHRDLKLENTLLDGSPAPRLK--------ICAFGYSKSSV--------- 168
Query: 196 VTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV 255
                          LH+ P++  G                              T  Y+
Sbjct: 169 ---------------LHSQPKDTVG------------------------------TPAYI 183
Query: 256 SPEVVRGDGHEFAV-DWWALGILTYEMLYGTTPFRGKNRKETFR-------NVLMKTPEF 307
           +PEV+    ++  V D W+ G+  Y ML G  PF      + FR       NV    P++
Sbjct: 184 APEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPDY 243
Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV-FFKGVRWDLLTD 355
           V        LI R+   DP KR+       EI+ H  F K +  DL+ D
Sbjct: 244 VHISPECRHLISRIFVADPAKRI----SIPEIRNHEWFLKNLPADLMND 288

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 129/349 (36%), Gaps = 86/349 (24%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D D  + +K +G G  G   L+ D+ ++       A+K +++       + +   + EI 
Sbjct: 17  DSDRYELVKDIGSGNFGVARLMRDKQSNELV----AVKYIERG-----EKIDENVKREII 67
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
               L HP + +    + T   LA  + Y  GG+L       N   FS    RF+  ++I
Sbjct: 68  NHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLI 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
             + + H M + +RDLK EN L+  S    L         +    + K S+         
Sbjct: 126 SGVSYCHAMQVCHRDLKLENTLLDGSPAPRLK--------ICAFGYSKSSV--------- 168
Query: 196 VTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV 255
                          LH+ P++  G                              T  Y+
Sbjct: 169 ---------------LHSQPKSTVG------------------------------TPAYI 183
Query: 256 SPEVVRGDGHEFAV-DWWALGILTYEMLYGTTPFRGKNRKETFR-------NVLMKTPEF 307
           +PEV+    ++  V D W+ G+  Y ML G  PF      + FR       NV    P++
Sbjct: 184 APEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIPDY 243
Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV-FFKGVRWDLLTD 355
           V        LI R+   DP KR+       EI+ H  F K +  DL+ D
Sbjct: 244 VHISPECRHLISRIFVADPAKRI----SIPEIRNHEWFLKNLPADLMND 288

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +G+G+ G   LV            + +K ++ S + +K   E  +R E+ VL+ + H
Sbjct: 29  LQKIGEGSFGKAILVKSTEDGRQ----YVIKEINISRMSSKEREE--SRREVAVLANMKH 82
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + +   S E +  L   + YC GGDL      Q   +F    I  +  +I  A++H+H
Sbjct: 83  PNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH 142
Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +  I +RD+K +NI + + G V L DF ++R L
Sbjct: 143 DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVL 175

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 140/332 (42%), Gaps = 80/332 (24%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRV 76
           + + + +LG+GA G V     +A +      +A+K +       +H  E+ +    E+ +
Sbjct: 7   DFEEIAVLGQGAFGQVV----KARNALDSRYYAIKKI-------RHTEEKLSTILSEVML 55
Query: 77  LSRLSHPFLPKLLGS-LETDEF------------LAWAVPYCPGGDLNVLRYKQNDRVFS 123
           L+ L+H ++ +   + LE   F            L   + YC  G L  L + +N     
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQR 115
Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
               R +  +I+ A+ ++H+ GI +RDLKP NI I +S +V + DF L++N+ +     K
Sbjct: 116 DEYWRLF-RQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILK 174
Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
               N                         LP +   L                      
Sbjct: 175 LDSQN-------------------------LPGSSDNL---------------------- 187
Query: 244 RSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVL 301
              S +GT  YV+ EV+ G GH    +D ++LGI+ +EM+Y  +T     N  +  R+V 
Sbjct: 188 --TSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVS 245
Query: 302 MK-TPEFVGQRTALTDLIQRLL-EKDPVKRLG 331
           ++  P+F   +  +   I RLL + DP KR G
Sbjct: 246 IEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPG 277

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKNSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDSTRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 120 ALSYCHSKKVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     ++T++    V
Sbjct: 162 RRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQDTYKRISRV 221
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 222 EFTFPDFVTE--GARDLISRLLKHNPSQR 248

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  K  ++LGKG+ G V L  D+          A+KV+ K  +  K + E   R E+++L
Sbjct: 32  DRYKGQRVLGKGSFGEVILCKDKITGQEC----AVKVISKRQVKQKTDKESLLR-EVQLL 86
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEII 135
            +L HP + KL    E   +         GG+L   ++  K+   V +  +IR    +++
Sbjct: 87  KQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIR----QVL 142
Query: 136 CAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSRNL 175
             I ++H   I +RDLKPEN+L+    +  ++ + DF LS + 
Sbjct: 143 SGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHF 185

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQS-FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K+K A +  +     + F+  ++    +GT  Y++PEV+ G   E   D W+
Sbjct: 160 PENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDE-KCDVWS 218
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF G N  +  + V       + P++     +  DLI+++L   P  
Sbjct: 219 TGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSM 278
Query: 329 RL 330
           R+
Sbjct: 279 RI 280

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 141/335 (42%), Gaps = 52/335 (15%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS- 81
           +K LGKGA G V+   DR                 ST     +A+R  R EI +L+ LS 
Sbjct: 14  VKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNST-----DAQRTFR-EIMILTELSG 67
Query: 82  HPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           H  +  LL  L  + D  +     Y       V+R      +  P   ++ + ++I  I+
Sbjct: 68  HENIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRAN----ILEPVHKQYVVYQLIKVIK 123
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH+ G+ +RD+KP NIL+    HV + DF LSR+ V      ++  NN    +   TEN
Sbjct: 124 YLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNI----RRVTNNIPLSINENTEN 179
Query: 200 PKRHRRIL-----TRWLHALPENKTG-LKKTKSARV-------------SPVSRRQQSFD 240
               + IL     TRW  A PE   G  K TK   +              P+     + +
Sbjct: 180 FDDDQPILTDYVATRWYRA-PEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMN 238
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF--- 297
             ER    +G  ++ S E V      FA           E L      R  N+++ F   
Sbjct: 239 QLER---IIGVIDFPSNEDVESIQSPFAK-------TMIESLKEKVEIRQSNKRDIFTKW 288
Query: 298 RNVLMK-TPEFVGQRTALTDLIQRLLEKDPVKRLG 331
           +N+L+K  P+      AL DL+ +LL+ +P KR+ 
Sbjct: 289 KNLLLKINPKADCNEEAL-DLLDKLLQFNPNKRIS 322

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER  +  GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  +
Sbjct: 174 DGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI 233
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                  P+ +    A   LIQ++L+ DP  R
Sbjct: 234 KKNEYSIPKHINPVAA--SLIQKMLQTDPTAR 263

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 12  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G+  V +  Q    F       Y++E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPRGE--VYKELQKLSKFDEQRTATYITELAN 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 167 RRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 226
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 227 EFTFPDFVTE--GARDLISRLLKHNPSQR 253

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 8   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 62
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 120
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 163 RRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 222
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 223 EFTFPDFVTE--GARDLISRLLKHNPSQR 249

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER  +  GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  +
Sbjct: 170 DGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI 229
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                  P+ +    A   LIQ++L+ DP  R
Sbjct: 230 KKNEYSIPKHINPVAA--SLIQKMLQTDPTAR 259

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER  +  GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  +
Sbjct: 170 DGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI 229
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                  P+ +    A   LIQ++L+ DP  R
Sbjct: 230 KKNEYSIPKHINPVAA--SLIQKMLQTDPTAR 259

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L  ++     ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 33  LEDFEIGRPLGKGKFGNVYLAREK----QSKFILALKVLFKAQLE-KAGVEHQLRREVEI 87
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 88  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 145
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 146 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 181

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 188 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 247
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 248 EFTFPDFVTE--GARDLISRLLKHNPSQR 274

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L  ++     ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 33  LEDFEIGRPLGKGKFGNVYLAREK----QSKFILALKVLFKAQLE-KAGVEHQLRREVEI 87
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 88  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 145
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 146 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 181

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R +   GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 188 RRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 247
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 248 EFTFPDFVTE--GARDLISRLLKHNPSQR 274

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 12  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE + G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 167 RRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 226
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 227 EFTFPDFVTE--GARDLISRLLKHNPSQR 253

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  K  ++LGKG+ G V L  D+       C  A+KV+ K  +  K + E   R E+++L
Sbjct: 50  DRYKGQRVLGKGSFGEVILCKDKITGQ--EC--AVKVISKRQVKQKTDKESLLR-EVQLL 104
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEII 135
            +L HP + KL    E   +         GG+L   ++  K+   V +  +IR    +++
Sbjct: 105 KQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIR----QVL 160
Query: 136 CAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLS 172
             I ++H   I +RDLKPEN+L+    +  ++ + DF LS
Sbjct: 161 SGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLS 200

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQS-FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K+K A +  +     + F+  ++    +GT  Y++PEV+ G   E   D W+
Sbjct: 178 PENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDE-KCDVWS 236
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF G N  +  + V       + P++     +  DLI+++L   P  
Sbjct: 237 TGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSM 296
Query: 329 RL 330
           R+
Sbjct: 297 RI 298

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 12  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 167 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 226
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 227 EFTFPDFVTE--GARDLISRLLKHNPSQR 253

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 10  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 122
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 165 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 224
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 225 EFTFPDFVTE--GARDLISRLLKHNPSQR 251

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  K  ++LGKG+ G V L  D+       C  A+KV+ K  +  K + E   R E+++L
Sbjct: 26  DRYKGQRVLGKGSFGEVILCKDKIT--GQEC--AVKVISKRQVKQKTDKESLLR-EVQLL 80
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEII 135
            +L HP + KL    E   +         GG+L   ++  K+   V +  +IR    +++
Sbjct: 81  KQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIR----QVL 136
Query: 136 CAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLS 172
             I ++H   I +RDLKPEN+L+    +  ++ + DF LS
Sbjct: 137 SGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLS 176

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQS-FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K+K A +  +     + F+  ++    +GT  Y++PEV+ G   E   D W+
Sbjct: 154 PENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDE-KCDVWS 212
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF G N  +  + V       + P++     +  DLI+++L   P  
Sbjct: 213 TGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSM 272
Query: 329 RL 330
           R+
Sbjct: 273 RI 274

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  K  ++LGKG+ G V L  D+       C  A+KV+ K  +  K + E   R E+++L
Sbjct: 49  DRYKGQRVLGKGSFGEVILCKDKITGQ--EC--AVKVISKRQVKQKTDKESLLR-EVQLL 103
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEII 135
            +L HP + KL    E   +         GG+L   ++  K+   V +  +IR    +++
Sbjct: 104 KQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIR----QVL 159
Query: 136 CAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLS 172
             I ++H   I +RDLKPEN+L+    +  ++ + DF LS
Sbjct: 160 SGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLS 199

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQS-FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K+K A +  +     + F+  ++    +GT  Y++PEV+ G   E   D W+
Sbjct: 177 PENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDE-KCDVWS 235
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF G N  +  + V       + P++     +  DLI+++L   P  
Sbjct: 236 TGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSM 295
Query: 329 RL 330
           R+
Sbjct: 296 RI 297

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 10  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 122
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 165 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 224
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 225 EFTFPDFVTE--GARDLISRLLKHNPSQR 251

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 162 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 221
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 222 EFTFPDFVTE--GARDLISRLLKHNPSQR 248

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 11  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 65
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 66  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 123
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 124 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 159

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 166 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 225
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 226 EFTFPDFVTE--GARDLISRLLKHNPSQR 252

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 9   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 63
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 64  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 121
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 122 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 157

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 164 RRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 223
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 224 EFTFPDFVTE--GARDLISRLLKHNPSQR 250

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 12  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 167 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 226
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 227 EFTFPDFVTE--GARDLISRLLKHNPSQR 253

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 8   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 62
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 120
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R ++  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 163 RRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 222
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 223 EFTFPDFVTE--GARDLISRLLKHNPSQR 249

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 8   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 62
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 120
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 163 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 222
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 223 EFTFPDFVTE--GARDLISRLLKHNPSQR 249

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 12  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G+  V +  Q    F       Y++E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPRGE--VYKELQKLSKFDEQRTATYITELAN 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 167 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 226
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 227 EFTFPDFVTE--GARDLISRLLKHNPSQR 253

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 10  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 122
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 165 RRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 224
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 225 EFTFPDFVTE--GARDLISRLLKHNPSQR 251

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++    + LGKG  G V+L  +R     ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 11  LEDFDIGRPLGKGKFGNVYLARER----QSKFILALKVLFKTQLE-KAGVEHQLRREVEI 65
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 66  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSRFDEQRTATYITELAN 123
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 124 ALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWS 159

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R ++  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET+R    V
Sbjct: 166 RRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRISRV 225
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
               P+FV +     DLI RLL+ +  +RL       E+ EH + K 
Sbjct: 226 EFTFPDFVTE--GARDLISRLLKHNASQRL----TLAEVLEHPWIKA 266

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 6   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 60
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 61  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 118
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 119 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 154

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 161 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 220
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 221 EFTFPDFVTE--GARDLISRLLKHNPSQR 247

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 162 RRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 221
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 222 EFTFPDFVTE--GARDLISRLLKHNPSQR 248

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 162 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 221
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 222 EFTFPDFVTE--GARDLISRLLKHNPSQR 248

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L  ++     ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 10  LEDFEIGRPLGKGKFGNVYLAREK----QSKFILALKVLFKAQLE-KAGVEHQLRREVEI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 122
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 165 RRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 224
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 225 EFTFPDFVTE--GARDLISRLLKHNPSQR 251

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 162 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 221
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 222 EFTFPDFVTE--GARDLISRLLKHNPSQR 248

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++    + LGKG  G V+L  +R +    +   ALKV+ K+ L  K   E + R E+ +
Sbjct: 11  LEDFDIGRPLGKGKFGNVYLARERQS----KFILALKVLFKTQLE-KAGVEHQLRREVEI 65
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 66  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSRFDEQRTATYITELAN 123
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 124 ALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWS 159

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET+R    V
Sbjct: 166 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRISRV 225
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
               P+FV +     DLI RLL+ +  +RL       E+ EH + K 
Sbjct: 226 EFTFPDFVTE--GARDLISRLLKHNASQRL----TLAEVLEHPWIKA 266

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 162 RRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 221
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 222 EFTFPDFVTE--GARDLISRLLKHNPSQR 248

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAE--RRARWEIRVLSR 79
           K LG GA G V L  +R          A+K++ K    + +  EA+       EI +L +
Sbjct: 15  KTLGSGACGEVKLAFERKTCKKV----AIKIISKRKFAIGSAREADPALNVETEIEILKK 70
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L+HP + K+    + +++    +    GG+L        ++    +  + Y  +++ A++
Sbjct: 71  LNHPCIIKIKNFFDAEDYYI-VLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQ 127
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH  GI +RDLKPEN+L+                L+K T F                  
Sbjct: 128 YLHENGIIHRDLKPENVLLSSQEE---------DCLIKITDF------------------ 160
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              H +IL          +T L +T                         GT  Y++PEV
Sbjct: 161 --GHSKIL---------GETSLMRT-----------------------LCGTPTYLAPEV 186
Query: 260 ---VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQR 311
              V   G+  AVD W+LG++ +  L G  PF     + + ++ +        PE   + 
Sbjct: 187 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV 246
Query: 312 T-ALTDLIQRLLEKDPVKRL 330
           +    DL+++LL  DP  R 
Sbjct: 247 SEKALDLVKKLLVVDPKARF 266

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAE--RRARWEIRVLSR 79
           K LG GA G V L  +R          A+K++ K    + +  EA+       EI +L +
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKV----AIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L+HP + K+    + +++    +    GG+L        ++    +  + Y  +++ A++
Sbjct: 72  LNHPCIIKIKNFFDAEDYYI-VLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQ 128
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH  GI +RDLKPEN+L+                L+K T F                  
Sbjct: 129 YLHENGIIHRDLKPENVLLSSQEE---------DCLIKITDF------------------ 161
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              H +IL          +T L +T                         GT  Y++PEV
Sbjct: 162 --GHSKIL---------GETSLMRT-----------------------LCGTPTYLAPEV 187
Query: 260 ---VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQR 311
              V   G+  AVD W+LG++ +  L G  PF     + + ++ +        PE   + 
Sbjct: 188 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV 247
Query: 312 T-ALTDLIQRLLEKDPVKRL 330
           +    DL+++LL  DP  R 
Sbjct: 248 SEKALDLVKKLLVVDPKARF 267

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAE--RRARWEIRVLSR 79
           K LG GA G V L  +R          A+K++ K    + +  EA+       EI +L +
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKV----AIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L+HP + K+    + +++    +    GG+L        ++    +  + Y  +++ A++
Sbjct: 72  LNHPCIIKIKNFFDAEDYYI-VLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQ 128
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH  GI +RDLKPEN+L+                L+K T F                  
Sbjct: 129 YLHENGIIHRDLKPENVLLSSQEE---------DCLIKITDF------------------ 161
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              H +IL          +T L +T                         GT  Y++PEV
Sbjct: 162 --GHSKIL---------GETSLMRT-----------------------LCGTPTYLAPEV 187
Query: 260 ---VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQR 311
              V   G+  AVD W+LG++ +  L G  PF     + + ++ +        PE   + 
Sbjct: 188 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV 247
Query: 312 T-ALTDLIQRLLEKDPVKRL 330
           +    DL+++LL  DP  R 
Sbjct: 248 SEKALDLVKKLLVVDPKARF 267

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 7   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 61
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 119
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 155

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 162 RRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 221
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 222 EFTFPDFVTE--GARDLISRLLKHNPSQR 248

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 10  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 122
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 158

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R +   GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 165 RRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 224
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 225 EFTFPDFVTE--GARDLISRLLKHNPSQR 251

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAE--RRARWEIRVLSR 79
           K LG GA G V L  +R          A+K++ K    + +  EA+       EI +L +
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKV----AIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L+HP + K+    + +++    +    GG+L        ++    +  + Y  +++ A++
Sbjct: 72  LNHPCIIKIKNFFDAEDYYI-VLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQ 128
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH  GI +RDLKPEN+L+                L+K T F                  
Sbjct: 129 YLHENGIIHRDLKPENVLLSSQEE---------DCLIKITDF------------------ 161
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              H +IL          +T L +T                         GT  Y++PEV
Sbjct: 162 --GHSKIL---------GETSLMRT-----------------------LCGTPTYLAPEV 187
Query: 260 ---VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQR 311
              V   G+  AVD W+LG++ +  L G  PF     + + ++ +        PE   + 
Sbjct: 188 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV 247
Query: 312 T-ALTDLIQRLLEKDPVKRL 330
           +    DL+++LL  DP  R 
Sbjct: 248 SEKALDLVKKLLVVDPKARF 267

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAE--RRARWEIRVLSR 79
           K LG GA G V L  +R          A+K++ K    + +  EA+       EI +L +
Sbjct: 22  KTLGSGACGEVKLAFERKTCKKV----AIKIISKRKFAIGSAREADPALNVETEIEILKK 77
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L+HP + K+    + +++    +    GG+L        ++    +  + Y  +++ A++
Sbjct: 78  LNHPCIIKIKNFFDAEDYYI-VLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQ 134
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH  GI +RDLKPEN+L+                L+K T F                  
Sbjct: 135 YLHENGIIHRDLKPENVLLSSQEE---------DCLIKITDF------------------ 167
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              H +IL          +T L +T                         GT  Y++PEV
Sbjct: 168 --GHSKIL---------GETSLMRT-----------------------LCGTPTYLAPEV 193
Query: 260 ---VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQR 311
              V   G+  AVD W+LG++ +  L G  PF     + + ++ +        PE   + 
Sbjct: 194 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV 253
Query: 312 T-ALTDLIQRLLEKDPVKRL 330
           +    DL+++LL  DP  R 
Sbjct: 254 SEKALDLVKKLLVVDPKARF 273

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER     GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  +
Sbjct: 192 DGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI 251
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                  P+ +    A   LIQ++L+ DP  R
Sbjct: 252 KKNEYSIPKHINPVAA--SLIQKMLQTDPTAR 281

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER     GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  +
Sbjct: 194 DGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI 253
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                  P+ +    A   LIQ++L+ DP  R
Sbjct: 254 KKNEYSIPKHINPVAA--SLIQKMLQTDPTAR 283

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-- 301
           R  +  GT +Y+ PE++ G  H   VD W +G+L YE+L G  PF   +  ET+R ++  
Sbjct: 177 RRKTMCGTLDYLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNPPFESASHNETYRRIVKV 236
Query: 302 -MKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
            +K P  V   T   DLI +LL  +P +RL
Sbjct: 237 DLKFPASVP--TGAQDLISKLLRHNPSERL 264

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 139/332 (41%), Gaps = 80/332 (24%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRV 76
           + + + +LG+GA G V     +A +      +A+K +       +H  E+ +    E+ +
Sbjct: 7   DFEEIAVLGQGAFGQVV----KARNALDSRYYAIKKI-------RHTEEKLSTILSEVML 55
Query: 77  LSRLSHPFLPKLLGS-LETDEF------------LAWAVPYCPGGDLNVLRYKQNDRVFS 123
           L+ L+H ++ +   + LE   F            L   + YC    L  L + +N     
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQR 115
Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
               R +  +I+ A+ ++H+ GI +RDLKP NI I +S +V + DF L++N+ +     K
Sbjct: 116 DEYWRLF-RQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILK 174
Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
               N                         LP +   L                      
Sbjct: 175 LDSQN-------------------------LPGSSDNL---------------------- 187
Query: 244 RSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVL 301
              S +GT  YV+ EV+ G GH    +D ++LGI+ +EM+Y  +T     N  +  R+V 
Sbjct: 188 --TSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVS 245
Query: 302 MK-TPEFVGQRTALTDLIQRLL-EKDPVKRLG 331
           ++  P+F   +  +   I RLL + DP KR G
Sbjct: 246 IEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPG 277

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  K  ++LGKG+ G V L  D+       C  A+KV+ K  +  K + E   R E+++L
Sbjct: 26  DRYKGQRVLGKGSFGEVILCKDKIT--GQEC--AVKVISKRQVKQKTDKESLLR-EVQLL 80
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEII 135
            +L HP + KL    E   +         GG+L   ++  K+   V +  +IR    +++
Sbjct: 81  KQLDHPNIXKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIR----QVL 136
Query: 136 CAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLS 172
             I + H   I +RDLKPEN+L+    +  ++ + DF LS
Sbjct: 137 SGITYXHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLS 176

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQS-FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K+K A +  +     + F+  ++    +GT  Y++PEV+ G   E   D W+
Sbjct: 154 PENLLLESKSKDANIRIIDFGLSTHFEASKKXKDKIGTAYYIAPEVLHGTYDE-KCDVWS 212
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF G N  +  + V       + P++     +  DLI++ L   P  
Sbjct: 213 TGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKXLTYVPSX 272
Query: 329 RL 330
           R+
Sbjct: 273 RI 274

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            D G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 227
Query: 299 NVLMKTPEF----VGQRTALT-DLIQRLLEKDPVKRL 330
           NV     EF        +AL  D I+RLL KDP KR+
Sbjct: 228 NVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER     GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  +
Sbjct: 168 DGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI 227
Query: 301 L---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                  P+ +    A   LIQ++L+ DP  R
Sbjct: 228 KKNEYSIPKHINPVAA--SLIQKMLQTDPTAR 257

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 16/173 (9%)
Query: 16  DLDNLKALKI---LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           DLD  +  +I   LG GA G V+   ++     A    A KV++  +     E       
Sbjct: 14  DLDPNEVWEIVGELGDGAFGKVYKAKNKETGALA----AAKVIETKS----EEELEDYIV 65
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           EI +L+   HP++ KLLG+   D  L   + +CPGG ++ +   + DR  +   I+    
Sbjct: 66  EIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIML-ELDRGLTEPQIQVVCR 124
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS----RNLVKKTAF 181
           +++ A+  LH+  I +RDLK  N+L+   G + L DF +S    + L K+ +F
Sbjct: 125 QMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSF 177

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAE--RRARWEIRVLSR 79
           K LG GA G V L  +R          A++++ K    + +  EA+       EI +L +
Sbjct: 155 KTLGSGACGEVKLAFERKTCKKV----AIRIISKRKFAIGSAREADPALNVETEIEILKK 210
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L+HP + K+    + +++    +    GG+L        ++    +  + Y  +++ A++
Sbjct: 211 LNHPCIIKIKNFFDAEDYYI-VLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQ 267
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH  GI +RDLKPEN+L+       L         +K T F                  
Sbjct: 268 YLHENGIIHRDLKPENVLLSSQEEDCL---------IKITDF------------------ 300
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              H +IL          +T L +T                         GT  Y++PEV
Sbjct: 301 --GHSKIL---------GETSLMRT-----------------------LCGTPTYLAPEV 326
Query: 260 ---VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQR 311
              V   G+  AVD W+LG++ +  L G  PF     + + ++ +        PE   + 
Sbjct: 327 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV 386
Query: 312 T-ALTDLIQRLLEKDPVKRL 330
           +    DL+++LL  DP  R 
Sbjct: 387 SEKALDLVKKLLVVDPKARF 406

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EI 74
           L N +  K +G+G    V+    RAA      P ALK V    L    +A+ RA    EI
Sbjct: 31  LANFRIEKKIGRGQFSEVY----RAACLLDGVPVALKKVQIFDLM---DAKARADCIKEI 83
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLS 132
            +L +L+HP + K   S   D  L   +     GDL+  +  +K+  R+     +  Y  
Sbjct: 84  DLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFV 143
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           ++  A+EH+H+  + +RD+KP N+ I  +G V L D  L R    KT
Sbjct: 144 QLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 190

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG 290
           ++S VGT  Y+SPE +  +G+ F  D W+LG L YEM    +PF G
Sbjct: 193 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG 238

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 58/259 (22%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKG  G    V  R             +V K  +    E +R    E++V+  L HP
Sbjct: 16  EVLGKGCFGQAIKVTHRETGEV--------MVMKELIRFDEETQRTFLKEVKVMRCLEHP 67
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            + K +G L  D+ L +   Y  GG L  +  K  D  +  S    +  +I   + +LH+
Sbjct: 68  NVLKFIGVLYKDKRLNFITEYIKGGTLRGI-IKSMDSQYPWSQRVSFAKDIASGMAYLHS 126
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
           M I +RDL   N L+R++ +V + DF L+R +V +                         
Sbjct: 127 MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK------------------------ 162
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
                      PE    LKK                 + ++  + VG   +++PE++ G 
Sbjct: 163 ---------TQPEGLRSLKKP----------------DRKKRYTVVGNPYWMAPEMINGR 197
Query: 264 GHEFAVDWWALGILTYEML 282
            ++  VD ++ GI+  E++
Sbjct: 198 SYDEKVDVFSFGIVLCEII 216

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  LG+G   TV+   D+  +        +K+  +S   AK    R A  EI++L  LSH
Sbjct: 15  LDFLGEGQFATVYKARDKNTNQIVAIK-KIKLGHRS--EAKDGINRTALREIKLLQELSH 71
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P +  LL +      ++    +    DL V+  K N  V +PS I+ Y+   +  +E+LH
Sbjct: 72  PNIIGLLDAFGHKSNISLVFDFMET-DLEVI-IKDNSLVLTPSHIKAYMLMTLQGLEYLH 129
Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              I +RDLKP N+L+ ++G + L DF L+++ 
Sbjct: 130 QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF 162

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS--TLHAKHEAE--RRARWEIRVLSR 79
           K LG GA G V L  +R          A++++ K    + +  EA+       EI +L +
Sbjct: 141 KTLGSGACGEVKLAFERKTCKKV----AIRIISKRKFAIGSAREADPALNVETEIEILKK 196
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           L+HP + K+    + +++    +    GG+L        ++    +  + Y  +++ A++
Sbjct: 197 LNHPCIIKIKNFFDAEDYYI-VLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQ 253
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           +LH  GI +RDLKPEN+L+       L         +K T F                  
Sbjct: 254 YLHENGIIHRDLKPENVLLSSQEEDCL---------IKITDF------------------ 286
Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              H +IL          +T L +T                         GT  Y++PEV
Sbjct: 287 --GHSKIL---------GETSLMRT-----------------------LCGTPTYLAPEV 312
Query: 260 ---VRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQR 311
              V   G+  AVD W+LG++ +  L G  PF     + + ++ +        PE   + 
Sbjct: 313 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEV 372
Query: 312 T-ALTDLIQRLLEKDPVKRL 330
           +    DL+++LL  DP  R 
Sbjct: 373 SEKALDLVKKLLVVDPKARF 392

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            D G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 227
Query: 299 NVLMKTPEF----VGQRTALT-DLIQRLLEKDPVKRL 330
           NV     EF        +AL  D I+RLL KDP KR+
Sbjct: 228 NVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +   +   ALKV+ K+ L  K   E + R E+ +
Sbjct: 4   LEDFEIGRPLGKGKFGNVYL----AREKQRKFILALKVLFKAQLE-KAGVEHQLRREVEI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 59  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 117 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 152

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 159 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 218
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 219 EFTFPDFVTE--GARDLISRLLKHNPSQR 245

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG GA G V+   ++     A    A KV++  +     E       EI +L+   HP++
Sbjct: 19  LGDGAFGKVYKAKNKETGALA----AAKVIETKS----EEELEDYIVEIEILATCDHPYI 70
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KLLG+   D  L   + +CPGG ++ +   + DR  +   I+    +++ A+  LH+  
Sbjct: 71  VKLLGAYYHDGKLWIMIEFCPGGAVDAIML-ELDRGLTEPQIQVVCRQMLEALNFLHSKR 129
Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLS----RNLVKKTAF 181
           I +RDLK  N+L+   G + L DF +S    + L K+ +F
Sbjct: 130 IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSF 169

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           D G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  N
Sbjct: 169 DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN 228
Query: 300 VLMKTPEF----VGQRTALT-DLIQRLLEKDPVKRL 330
           V     EF        +AL  D I+RLL KDP KR+
Sbjct: 229 VSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM 264

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER  +  GT  Y++PEV+   GH F VD W+LG + Y +L G  PF     KET+  +
Sbjct: 195 DGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY--I 252
Query: 301 LMKTPEFVGQR---TALTDLIQRLLEKDPVKR 329
            +K  E+   R      + LI+R+L  DP  R
Sbjct: 253 RIKKNEYSVPRHINPVASALIRRMLHADPTLR 284

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 124/318 (38%), Gaps = 85/318 (26%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +K LG GA G V L  D+          A+K++ K+++     +  +   E+ VL  L H
Sbjct: 42  VKKLGSGAYGEVLLCRDK----VTHVERAIKIIRKTSVSTS--SNSKLLEEVAVLKLLDH 95
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
           P + KL    E        +    GG+L   ++   + + V +  +I+    +++  + +
Sbjct: 96  PNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIK----QVLSGVTY 151
Query: 141 LHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           LH   I +RDLKPEN+L+    +   + + DF LS                       V 
Sbjct: 152 LHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLS----------------------AVF 189
Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP 257
           EN K+ +  L    +  PE               V R++                     
Sbjct: 190 ENQKKMKERLGTAYYIAPE---------------VLRKK--------------------- 213
Query: 258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV-----LMKTPEFVGQRT 312
                  ++   D W++G++ + +L G  PF G+  +E  R V        +PE+     
Sbjct: 214 -------YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSE 266
Query: 313 ALTDLIQRLLEKDPVKRL 330
              DLI+++L+ D  +R+
Sbjct: 267 GAKDLIKQMLQFDSQRRI 284

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 125/327 (38%), Gaps = 79/327 (24%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG GA G V LV +R++         +K ++K       E   +   EI VL  L HP +
Sbjct: 30  LGSGAFGDVHLVEERSSG----LERVIKTINKDRSQVPME---QIEAEIEVLKSLDHPNI 82
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            K+    E    +   +  C GG+L   ++  +   +  S   +   + +++ A+ + H 
Sbjct: 83  IKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH- 141
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
                            S HV   D      L + T+           P  P+       
Sbjct: 142 -----------------SQHVVHKDLKPENILFQDTS-----------PHSPI------- 166
Query: 204 RRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD 263
            +I+   L  L                        F + E S +  GT  Y++PEV + D
Sbjct: 167 -KIIDFGLAEL------------------------FKSDEHSTNAAGTALYMAPEVFKRD 201
Query: 264 GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALT----DLIQ 319
              F  D W+ G++ Y +L G  PF G + +E  +    K P +  +   LT    DL++
Sbjct: 202 V-TFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLK 260
Query: 320 RLLEKDPVKRLGYLRGACEIKEHVFFK 346
           ++L KDP +R      A ++  H +FK
Sbjct: 261 QMLTKDPERR----PSAAQVLHHEWFK 283

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 10  LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 122
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + +F  S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWS 158

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 165 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 224
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 225 EFTFPDFVTE--GARDLISRLLKHNPSQR 251

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L    A +  ++   ALKV+ K+ L  K   E + R E+ +
Sbjct: 9   LEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEI 63
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G   V R  Q    F       Y++E+  
Sbjct: 64  QSHLRHPNILRLYGYFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELAN 121
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + +F  S
Sbjct: 122 ALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWS 157

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++    V
Sbjct: 164 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 223
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               P+FV +     DLI RLL+ +P +R
Sbjct: 224 EFTFPDFVTE--GARDLISRLLKHNPSQR 250

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER     GT  Y++PEV+   GH F VD W+LG + Y +L G  PF     KET+  +
Sbjct: 195 DGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY--I 252
Query: 301 LMKTPEFVGQR---TALTDLIQRLLEKDPVKR 329
            +K  E+   R      + LI+R+L  DP  R
Sbjct: 253 RIKKNEYSVPRHINPVASALIRRMLHADPTLR 284

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER     GT  Y++PEV+   GH F VD W+LG + Y +L G  PF     KET+  +
Sbjct: 195 DGERKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY--I 252
Query: 301 LMKTPEFVGQR---TALTDLIQRLLEKDPVKR 329
            +K  E+   R      + LI+R+L  DP  R
Sbjct: 253 RIKKNEYSVPRHINPVASALIRRMLHADPTLR 284

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L + N + LK +GKG    V L    A         A+K++DK+ L++   + ++   E+
Sbjct: 4   LHIGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNS--SSLQKLFREV 57
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           R++  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I
Sbjct: 58  RIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGWMKEKEARAKFRQI 115
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           + A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 116 VSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 153

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G+  Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 156 FTFGNKLDTFCGSPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 213
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L+++ L  +P KR
Sbjct: 214 LRERVLRGKYRIPFYMS--TDCENLLKKFLILNPSKR 248

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +GER     GT  Y++PEV+   GH F VD W+LG + Y +L G  PF     KET+  +
Sbjct: 179 DGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETY--I 236
Query: 301 LMKTPEFVGQR---TALTDLIQRLLEKDPVKR 329
            +K  E+   R      + LI+R+L  DP  R
Sbjct: 237 RIKKNEYSVPRHINPVASALIRRMLHADPTLR 268

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L    A         A+K++DK+ L++   + ++   E+R+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNS--SSLQKLFREVRI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVS 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 125 AVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G+  Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 163 FTFGNKLDTFCGSPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 220
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L+++ L  +P KR
Sbjct: 221 LRERVLRGKYRIPFYMS--TDCENLLKKFLILNPSKR 255

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L    A         A+K++DK+ L++   + ++   E+R+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNS--SSLQKLFREVRI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVS 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 125 AVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G   Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 163 FTFGNKLDAFCGAPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 220
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L+++ L  +P KR
Sbjct: 221 LRERVLRGKYRIPFYMS--TDCENLLKKFLILNPSKR 255

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L    A         A+K++DK+ L++   + ++   E+R+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNS--SSLQKLFREVRI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVS 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 125 AVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G+  Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 163 FTFGNKLDTFCGSPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 220
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L+++ L  +P KR
Sbjct: 221 LRERVLRGKYRIPFYMS--TDCENLLKKFLILNPSKR 255

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            D G    +  GT  +V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 168 IDFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 227
Query: 299 NVLMKTPEF----VGQRTALT-DLIQRLLEKDPVKRL 330
           NV     EF        +AL  D I+RLL KDP KR+
Sbjct: 228 NVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 75/299 (25%)
Query: 51  ALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL 110
           A+K++++  + +  +   + + EI+ L    HP + KL   + T       + Y  GG+L
Sbjct: 40  AVKILNRQKIRSL-DVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGEL 98
Query: 111 NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD 170
                K   RV      R +  +I+ A+++ H   + +RDLKPEN+L+    +  + DF 
Sbjct: 99  FDYICKHG-RVEEMEARRLF-QQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG 156
Query: 171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVS 230
           LS N++    F + S  +  +                     A PE  +G          
Sbjct: 157 LS-NMMSDGEFLRDSCGSPNY---------------------AAPEVISG---------- 184
Query: 231 PVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG 290
                                  Y  PE          VD W+ G++ Y +L GT PF  
Sbjct: 185 ---------------------RLYAGPE----------VDIWSCGVILYALLCGTLPFDD 213
Query: 291 KNRKETFRNV---LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           ++    F+ +   +   PE++ +  A   L+  +L+ DP+KR        +I+EH +FK
Sbjct: 214 EHVPTLFKKIRGGVFYIPEYLNRSVA--TLLMHMLQVDPLKR----ATIKDIREHEWFK 266

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 119/299 (39%), Gaps = 75/299 (25%)
Query: 51  ALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL 110
           A+K++++  + +  +   + R EI+ L    HP + KL   + T   +   + Y  GG+L
Sbjct: 45  AVKILNRQKIRSL-DVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGEL 103
Query: 111 NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD 170
               Y   +        R    +I+  +++ H   + +RDLKPEN+L+    +  + DF 
Sbjct: 104 --FDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG 161
Query: 171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVS 230
           LS N++    F + S  +  +                     A PE  +G          
Sbjct: 162 LS-NMMSDGEFLRXSCGSPNY---------------------AAPEVISG---------- 189
Query: 231 PVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG 290
                                  Y  PE          VD W+ G++ Y +L GT PF  
Sbjct: 190 ---------------------RLYAGPE----------VDIWSSGVILYALLCGTLPFDD 218
Query: 291 KNRKETFRNV---LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            +    F+ +   +  TP+++    ++  L++ +L+ DP+KR        +I+EH +FK
Sbjct: 219 DHVPTLFKKICDGIFYTPQYLN--PSVISLLKHMLQVDPMKR----ATIKDIREHEWFK 271

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 75/299 (25%)
Query: 51  ALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL 110
           A+K++++  + +  +   + + EI+ L    HP + KL   + T       + Y  GG+L
Sbjct: 40  AVKILNRQKIRSL-DVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGEL 98
Query: 111 NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD 170
                K   RV      R +  +I+ A+++ H   + +RDLKPEN+L+    +  + DF 
Sbjct: 99  FDYICKHG-RVEEMEARRLF-QQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG 156
Query: 171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVS 230
           LS N++    F + S  +  +                     A PE  +G          
Sbjct: 157 LS-NMMSDGEFLRTSCGSPNY---------------------AAPEVISG---------- 184
Query: 231 PVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG 290
                                  Y  PE          VD W+ G++ Y +L GT PF  
Sbjct: 185 ---------------------RLYAGPE----------VDIWSCGVILYALLCGTLPFDD 213
Query: 291 KNRKETFRNV---LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           ++    F+ +   +   PE++ +  A   L+  +L+ DP+KR        +I+EH +FK
Sbjct: 214 EHVPTLFKKIRGGVFYIPEYLNRSVA--TLLMHMLQVDPLKR----ATIKDIREHEWFK 266

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G+ ++ET  N+ 
Sbjct: 165 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNIS 224
Query: 302 MKTPEFVGQRTALT-----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
               +F  +  + T     D I+RLL KDP +R+   +      EH + K +R
Sbjct: 225 AVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSL----EHSWIKAIR 273

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L    A         A++++DK+ L++   + ++   E+R+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVRIIDKTQLNS--SSLQKLFREVRI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVS 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 125 AVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + + F G+  Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 163 FTFGNKLDEFCGSPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 220
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L+++ L  +P KR
Sbjct: 221 LRERVLRGKYRIPFYMS--TDCENLLKKFLILNPSKR 255

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W  G+L YE L G  PF   +  ET R   NV
Sbjct: 168 RRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV 227
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACE 338
            +K P F+   +   DLI +LL   P +RL  L+G  E
Sbjct: 228 DLKFPPFLSDGS--KDLISKLLRYHPPQRLP-LKGVME 262

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G+ ++ET  N+ 
Sbjct: 186 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNIS 245
Query: 302 MKTPEFVGQRTALT-----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
               +F  +  + T     D I+RLL KDP +R+   +      EH + K +R
Sbjct: 246 AVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMXIAQSL----EHSWIKAIR 294

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L    A         A++++DK+ L++   + ++   E+R+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVRIIDKTQLNS--SSLQKLFREVRI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVS 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 125 AVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G+  Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 163 FTFGNKLDTFCGSPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 220
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L+++ L  +P KR
Sbjct: 221 LRERVLRGKYRIPFYMS--TDCENLLKKFLILNPSKR 255

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NV 300
           R     GT +Y+ PE++ G  H+  VD W  G+L YE L G  PF   +  ET R   NV
Sbjct: 169 RRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV 228
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACE 338
            +K P F+   +   DLI +LL   P +RL  L+G  E
Sbjct: 229 DLKFPPFLSDGS--KDLISKLLRYHPPQRLP-LKGVME 263

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L        T R   A+K++DK+ L+    + ++   E+R+
Sbjct: 11  IGNYRLLKTIGKGNFAKVKLARHIL---TGR-EVAIKIIDKTQLNPT--SLQKLFREVRI 64
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 65  MKILNHPNIVKLFEVIETEKTLYLIMEYASGGE--VFDYLVAHGRMKEKEARSKFRQIVS 122
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 123 AVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 158

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G+  Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 161 FTVGGKLDTFCGSPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 218
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L++R L  +P+KR
Sbjct: 219 LRERVLRGKYRIPFYMS--TDCENLLKRFLVLNPIKR 253

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L        T R   A+K++DK+ L+    + ++   E+R+
Sbjct: 14  IGNYRLLKTIGKGNFAKVKLARHIL---TGR-EVAIKIIDKTQLNPT--SLQKLFREVRI 67
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 68  MKILNHPNIVKLFEVIETEKTLYLIMEYASGGE--VFDYLVAHGRMKEKEARSKFRQIVS 125
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 126 AVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 161

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G   Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 164 FTVGGKLDAFCGAPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 221
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P ++   T   +L++R L  +P+KR
Sbjct: 222 LRERVLRGKYRIPFYMS--TDCENLLKRFLVLNPIKR 256

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N + LK +GKG    V L    A         A+K++DK+ L++   + ++   E+R+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNS--SSLQKLFREVRI 66
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+HP + KL   +ET++ L     Y  GG+  V  Y            R    +I+ 
Sbjct: 67  XKVLNHPNIVKLFEVIETEKTLYLVXEYASGGE--VFDYLVAHGRXKEKEARAKFRQIVS 124
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 125 AVQYCHQKFIVHRDLKAENLLLDADXNIKIADFGFS 160

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G   Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 163 FTFGNKLDAFCGAPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 220
Query: 296 TFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               VL    + P +    T   +L+++ L  +P KR
Sbjct: 221 LRERVLRGKYRIPFYXS--TDCENLLKKFLILNPSKR 255

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G+ ++ET  N+ 
Sbjct: 172 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNIS 231
Query: 302 MKTPEFVGQRTALT-----DLIQRLLEKDPVKRL 330
               +F  +  + T     D I+RLL KDP +R+
Sbjct: 232 AVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRM 265

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 105/266 (39%), Gaps = 88/266 (33%)
Query: 111 NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT---LT 167
           ++L +    R F+       + ++  A++ LHN GIA+RDLKPENIL      V+   + 
Sbjct: 97  SILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKIC 156
Query: 168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSA 227
           DFDL   +          LN +  P+                   + PE  T        
Sbjct: 157 DFDLGSGI---------KLNGDCSPI-------------------STPELLTP------- 181
Query: 228 RVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAV-----DWWALGILTYEML 282
                                 G+ EY++PEVV     E ++     D W+LG++ Y +L
Sbjct: 182 ---------------------CGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILL 220
Query: 283 YGTTPFRGK-------NRKE---TFRNVLMKT----------PEFVGQRTALTDLIQRLL 322
            G  PF G+       +R E     +N+L ++           ++     A  DLI +LL
Sbjct: 221 SGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLL 280
Query: 323 EKDPVKRLGYLRGACEIKEHVFFKGV 348
            +D  +RL     A ++ +H + +G 
Sbjct: 281 VRDAKQRL----SAAQVLQHPWVQGC 302

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG GA G V+   ++     A    A KV+D  +     E       EI +L+   HP +
Sbjct: 45  LGDGAFGKVYKAQNKETSVLA----AAKVIDTKS----EEELEDYMVEIDILASCDHPNI 96
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KLL +   +  L   + +C GG ++ +  +  +R  + S I+    + + A+ +LH+  
Sbjct: 97  VKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNK 155
Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLS 172
           I +RDLK  NIL    G + L DF +S
Sbjct: 156 IIHRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG GA G V+   ++     A    A KV+D  +     E       EI +L+   HP +
Sbjct: 45  LGDGAFGKVYKAQNKETSVLA----AAKVIDTKS----EEELEDYMVEIDILASCDHPNI 96
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KLL +   +  L   + +C GG ++ +  +  +R  + S I+    + + A+ +LH+  
Sbjct: 97  VKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNK 155
Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLS 172
           I +RDLK  NIL    G + L DF +S
Sbjct: 156 IIHRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG GA G V+   ++     A    A KV+D  +     E       EI +L+   HP +
Sbjct: 45  LGDGAFGKVYKAQNKETSVLA----AAKVIDTKS----EEELEDYMVEIDILASCDHPNI 96
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            KLL +   +  L   + +C GG ++ +  +  +R  + S I+    + + A+ +LH+  
Sbjct: 97  VKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNK 155
Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLS 172
           I +RDLK  NIL    G + L DF +S
Sbjct: 156 IIHRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE- 306
            +GT EY++PE++  D    A D W +GI+ Y +L  T+PF G++ +ET+ N+     + 
Sbjct: 193 IMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDY 252
Query: 307 ----FVGQRTALTDLIQRLLEKDPVKR 329
               F       TD IQ LL K+P KR
Sbjct: 253 SEETFSSVSQLATDFIQSLLVKNPEKR 279

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEIXI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 137/332 (41%), Gaps = 80/332 (24%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRV 76
           + + + +LG+GA G V     +A +      +A+K +       +H  E+ +    E+ +
Sbjct: 7   DFEEIAVLGQGAFGQVV----KARNALDSRYYAIKKI-------RHTEEKLSTILSEVXL 55
Query: 77  LSRLSHPFLPKLLGS-LETDEF------------LAWAVPYCPGGDLNVLRYKQNDRVFS 123
           L+ L+H ++ +   + LE   F            L     YC    L  L + +N     
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQR 115
Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
               R +  +I+ A+ ++H+ GI +R+LKP NI I +S +V + DF L++N+ +     K
Sbjct: 116 DEYWRLF-RQILEALSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRSLDILK 174
Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
               N                         LP +   L                      
Sbjct: 175 LDSQN-------------------------LPGSSDNL---------------------- 187
Query: 244 RSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVL 301
              S +GT  YV+ EV+ G GH    +D ++LGI+ +E +Y  +T     N  +  R+V 
Sbjct: 188 --TSAIGTAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXIYPFSTGXERVNILKKLRSVS 245
Query: 302 MK-TPEFVGQRTALTDLIQRLL-EKDPVKRLG 331
           ++  P+F   +  +   I RLL + DP KR G
Sbjct: 246 IEFPPDFDDNKXKVEKKIIRLLIDHDPNKRPG 277

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 14  SLDLDNL-KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           SLD + L   L+ +GKG+ G VF    +  D   +   A+K++D   L    +     + 
Sbjct: 2   SLDPEELFTKLEKIGKGSFGEVF----KGIDNRTQKVVAIKIID---LEEAEDEIEDIQQ 54
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYL 131
           EI VLS+   P++ K  GS   D  L   + Y  GG  L++L     D     +++R   
Sbjct: 55  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILR--- 111
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            EI+  +++LH+    +RD+K  N+L+ + G V L DF ++  L 
Sbjct: 112 -EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT 155

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 128/353 (36%), Gaps = 94/353 (26%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D D    +K +G G  G   L+ D+          A+K +++         +   + EI 
Sbjct: 18  DSDRYDFVKDIGSGNFGVARLMRDKLTKELV----AVKYIERGA-----AIDENVQREII 68
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSE 133
               L HP + +    + T   LA  + Y  GG+L    Y++  N   FS    RF+  +
Sbjct: 69  NHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGEL----YERICNAGRFSEDEARFFFQQ 124
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQS--GHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
           ++  + + H+M I +RDLK EN L+  S    + + DF  S++ V               
Sbjct: 125 LLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV--------------- 169
Query: 192 PVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT 251
                              LH+ P++  G                              T
Sbjct: 170 -------------------LHSQPKSTVG------------------------------T 180
Query: 252 EEYVSPEVVRGDGHEFAV-DWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK------- 303
             Y++PEV+    ++  + D W+ G+  Y ML G  PF        +R  + +       
Sbjct: 181 PAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYS 240
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV-FFKGVRWDLLTD 355
            P+ +        LI R+   DP  R+       EIK H  F K +  DL+ +
Sbjct: 241 IPDDIRISPECCHLISRIFVADPATRISIP----EIKTHSWFLKNLPADLMNE 289

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 228
Query: 299 NVLMKT----PEFVGQRTALT-DLIQRLLEKDPVKRL 330
           N+   +     EF  Q + L  D I++LL K+  KRL
Sbjct: 229 NITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRL 265

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 14  SLDLDNL-KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           SLD + L   L+ +GKG+ G VF    +  D   +   A+K++D   L    +     + 
Sbjct: 2   SLDPEELFTKLEKIGKGSFGEVF----KGIDNRTQKVVAIKIID---LEEAEDEIEDIQQ 54
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYL 131
           EI VLS+   P++ K  GS   D  L   + Y  GG  L++L     D     +++R   
Sbjct: 55  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILR--- 111
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            EI+  +++LH+    +RD+K  N+L+ + G V L DF ++  L 
Sbjct: 112 -EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT 155

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  N
Sbjct: 170 EDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN 229
Query: 300 VLMKT----PEFVGQRTALT-DLIQRLLEKDPVKRL 330
           +   +     EF  Q + L  D I++LL K+  KRL
Sbjct: 230 ITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRL 265

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTLHAKHEAERRARWEIR 75
           D  +  +++GKGA    F V  R  +      FA+K+VD  K T       E   R E  
Sbjct: 24  DVYELCEVIGKGA----FSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKR-EAS 78
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR--VFSPSVIRFYLSE 133
           +   L HP + +LL +  +D  L     +  G DL     K+ D   V+S +V   Y+ +
Sbjct: 79  ICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQ 138
Query: 134 IICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNL 175
           I+ A+ + H+  I +RD+KPEN+L+     S  V L DF ++  L
Sbjct: 139 ILEALRYCHDNNIIHRDVKPENVLLASKENSAPVKLGDFGVAIQL 183

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 215 PENKTGLKKTKSA--RVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K  SA  ++       Q  ++G  +   VGT  +++PEVV+ + +   VD W
Sbjct: 158 PENVLLASKENSAPVKLGDFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVW 217
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPV 327
             G++ + +L G  PF G  ++  F  ++     M   ++     +  DL++R+L  DP 
Sbjct: 218 GCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPA 276
Query: 328 KRL 330
           +R+
Sbjct: 277 ERI 279

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MK 303
            GT E+ +PEV  G    +  D W++G+L+Y +L G +PF G+N  ET RNV      M 
Sbjct: 317 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMD 376
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRL 330
              F G      D I++LL  DP  R+
Sbjct: 377 DSAFSGISEDGKDFIRKLLLADPNTRM 403

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MK 303
            GT E+ +PEV  G    +  D W++G+L+Y +L G +PF G+N  ET RNV      M 
Sbjct: 211 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMD 270
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRL 330
              F G      D I++LL  DP  R+
Sbjct: 271 DSAFSGISEDGKDFIRKLLLADPNTRM 297

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEIXI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMXGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            + L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NAMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMCGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMCGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           + N +  K +GKG    V L        T R   A+K++DK+ L+    + ++   E+R+
Sbjct: 14  IGNYRLQKTIGKGNFAKVKLARHVL---TGR-EVAVKIIDKTQLNPT--SLQKLFREVRI 67
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L+HP + KL   +ET++ L   + Y  GG+  V  Y            R    +I+ 
Sbjct: 68  MKILNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVS 125
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+++ H   I +RDLK EN+L+    ++ + DF  S
Sbjct: 126 AVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFS 161

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G+  Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 164 FTVGNKLDTFCGSPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 221
Query: 296 TFRNVL 301
               VL
Sbjct: 222 LRERVL 227

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  N
Sbjct: 170 EDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN 229
Query: 300 VLMKT----PEFVGQRTALT-DLIQRLLEKDPVKRL 330
           +   +     EF  Q + L  D I++LL K+  KRL
Sbjct: 230 ITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRL 265

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMCGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMCGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMCGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 138/357 (38%), Gaps = 107/357 (29%)
Query: 24  KILGKGA----MGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           ++LG+GA     G V L + +         +A+K+++K   H++    R    E+  L +
Sbjct: 19  ELLGEGAYAKVQGAVSLQNGKE--------YAVKIIEKQAGHSRSRVFR----EVETLYQ 66
Query: 80  L-SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
              +  + +L+   E D           GG  ++L + Q  + F+       + ++  A+
Sbjct: 67  CQGNKNILELIEFFEDDTRFYLVFEKLQGG--SILAHIQKQKHFNEREASRVVRDVAAAL 124
Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVT---LTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           + LH  GIA+RDLKPENIL      V+   + DFDL   +          LNN+  P+  
Sbjct: 125 DFLHTKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGM---------KLNNSCTPI-- 173
Query: 196 VTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV 255
                              PE  T                              G+ EY+
Sbjct: 174 -----------------TTPELTTP----------------------------CGSAEYM 188
Query: 256 SPEVV-----RGDGHEFAVDWWALGILTYEMLYGTTPFRGK-------NRKETFRNVLMK 303
           +PEVV     +   ++   D W+LG++ Y ML G  PF G        +R E  R    K
Sbjct: 189 APEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNK 248
Query: 304 TPEFVGQ-------------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
             E + +              +   DLI +LL +D  +RL     A ++ +H + +G
Sbjct: 249 LFESIQEGKYEFPDKDWAHISSEAKDLISKLLVRDAKQRL----SAAQVLQHPWVQG 301

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAAGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 56
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 57  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 114
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 115 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 158
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 159 -------ERLLNKMCGTLP--------------------------------------YVA 173
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 174 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 206

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEIXI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMXGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 17  LDNLKA--------LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
           + NLKA        L+ +GKG+ G VF    +  D   +   A+K++D   L    +   
Sbjct: 13  MQNLKADPEELFTKLEKIGKGSFGEVF----KGIDNRTQKVVAIKIID---LEEAEDEIE 65
Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVI 127
             + EI VLS+   P++ K  GS   D  L   + Y  GG  L++L     D     +++
Sbjct: 66  DIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATIL 125
Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
           R    EI+  +++LH+    +RD+K  N+L+ + G V L DF ++  L 
Sbjct: 126 R----EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT 170

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 14  SLDLDNL-KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           S+D + L   L+ +GKG+ G VF    +  D   +   A+K++D   L    +     + 
Sbjct: 22  SMDPEELFTKLEKIGKGSFGEVF----KGIDNRTQKVVAIKIID---LEEAEDEIEDIQQ 74
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYL 131
           EI VLS+   P++ K  GS   D  L   + Y  GG  L++L     D     +++R   
Sbjct: 75  EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILR--- 131
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL----VKKTAF 181
            EI+  +++LH+    +RD+K  N+L+ + G V L DF ++  L    +K+  F
Sbjct: 132 -EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTF 184

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMCGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMXGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMXGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMCGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 58
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 116
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 117 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 160
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 161 -------ERLLNKMCGTLP--------------------------------------YVA 175
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +++LG GA   VFLV  R         FALK + KS        E     EI VL ++ H
Sbjct: 14  MEVLGSGAFSEVFLVKQRLTGKL----FALKCIKKSPAFRDSSLEN----EIAVLKKIKH 65
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI-----RFYLSEIICA 137
             +  L    E+       +    GG+L        DR+    V         + +++ A
Sbjct: 66  ENIVTLEDIYESTTHYYLVMQLVSGGELF-------DRILERGVYTEKDASLVIQQVLSA 118
Query: 138 IEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSR 173
           +++LH  GI +RDLKPEN+L     ++  + +TDF LS+
Sbjct: 119 VKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK 157

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWAL 274
           PEN   L   +++++          +     ++  GT  YV+PEV+    +  AVD W++
Sbjct: 134 PENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSI 193
Query: 275 GILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           G++TY +L G  PF  +   + F  +       ++P +     +  D I  LLEKDP +R
Sbjct: 194 GVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNER 253

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 71/273 (26%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD   +    +     + EI +
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAV----AVKIVD---MKRAVDCPENIKKEICI 57
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+L   R + +  +  P   RF+  +++ 
Sbjct: 58  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL-FDRIEPDIGMPEPDAQRFF-HQLMA 115
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+      T F      NN+      
Sbjct: 116 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA------TVFRY----NNR------ 159
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                   R+L +    LP                                      YV+
Sbjct: 160 -------ERLLNKMXGTLP--------------------------------------YVA 174
Query: 257 PEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
           PE++ R + H   VD W+ GI+   ML G  P+
Sbjct: 175 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 128/329 (38%), Gaps = 77/329 (23%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L + + ++ LG+G  G VF   ++  D    C +A+K +    L  +  A  +   E++ 
Sbjct: 4   LTDFEPIQCLGRGGFGVVFEAKNKVDD----CNYAIKRI---RLPNRELAREKVMREVKA 56
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNV---LRYKQNDRVF----------S 123
           L++L HP + +   +           P  P   L +   L  K+N + +           
Sbjct: 57  LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERE 116
Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
            SV      +I  A+E LH+ G+ +RDLKP NI       V + D               
Sbjct: 117 RSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGD--------------- 161
Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
                  F ++   +  +  + +LT     +P                            
Sbjct: 162 -------FGLVTAMDQDEEEQTVLT----PMPAYA------------------------- 185
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK-NRKETFRNV-- 300
           R    VGT+ Y+SPE + G+ +   VD ++LG++ +E+LY   PF  +  R  T  +V  
Sbjct: 186 RHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRN 242
Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           L   P F  +      ++Q +L   P++R
Sbjct: 243 LKFPPLFTQKYPCEYVMVQDMLSPSPMER 271

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL---HAKHEAERRARWEIRVL 77
           K +  LG G M TV+L  D            +KV  K+       K E  +R   E+   
Sbjct: 14  KIVDKLGGGGMSTVYLAEDTI--------LNIKVAIKAIFIPPREKEETLKRFEREVHNS 65
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           S+LSH  +  ++   E D+     + Y  G  L+   Y ++    S      + ++I+  
Sbjct: 66  SQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLS--EYIESHGPLSVDTAINFTNQILDG 123
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I+H H+M I +RD+KP+NILI  +  + + DF +++ L
Sbjct: 124 IKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL 161

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG--------KNRKE 295
           ++N  +GT +Y SPE  +G+  +   D +++GI+ YEML G  PF G        K+ ++
Sbjct: 168 QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQD 227
Query: 296 TFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           +  NV     + + Q  +L+++I R  EKD   R
Sbjct: 228 SVPNVTTDVRKDIPQ--SLSNVILRATEKDKANR 259

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 104/266 (39%), Gaps = 88/266 (33%)
Query: 111 NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT---LT 167
           ++L +    R F+       + ++  A++ LHN GIA+RDLKPENIL      V+   + 
Sbjct: 97  SILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKIC 156
Query: 168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSA 227
           DF L   +          LN +  P+                   + PE  T        
Sbjct: 157 DFGLGSGI---------KLNGDCSPI-------------------STPELLTP------- 181
Query: 228 RVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAV-----DWWALGILTYEML 282
                                 G+ EY++PEVV     E ++     D W+LG++ Y +L
Sbjct: 182 ---------------------CGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILL 220
Query: 283 YGTTPFRGK-------NRKE---TFRNVLMKT----------PEFVGQRTALTDLIQRLL 322
            G  PF G+       +R E     +N+L ++           ++     A  DLI +LL
Sbjct: 221 SGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLL 280
Query: 323 EKDPVKRLGYLRGACEIKEHVFFKGV 348
            +D  +RL     A ++ +H + +G 
Sbjct: 281 VRDAKQRL----SAAQVLQHPWVQGC 302

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 33/160 (20%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG+GA   V+    R      + P+ALKV+ K+        ++  R EI VL RLSHP +
Sbjct: 61  LGRGATSIVY----RCKQKGTQKPYALKVLKKTV------DKKIVRTEIGVLLRLSHPNI 110
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE---------IIC 136
            KL    ET   ++  +    GG+L           F   V + Y SE         I+ 
Sbjct: 111 IKLKEIFETPTEISLVLELVTGGEL-----------FDRIVEKGYYSERDAADAVKQILE 159
Query: 137 AIEHLHNMGIAYRDLKPENILIRQ---SGHVTLTDFDLSR 173
           A+ +LH  GI +RDLKPEN+L         + + DF LS+
Sbjct: 160 AVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSK 199

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE-TFRNVLMKTP 305
           +  GT  Y +PE++RG  +   VD W++GI+TY +L G  PF  +   +  FR +L    
Sbjct: 209 TVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEY 268
Query: 306 EFVG---QRTALT--DLIQRLLEKDPVKRL 330
            F+       +L   DL+++L+  DP KRL
Sbjct: 269 YFISPWWDEVSLNAKDLVRKLIVLDPKKRL 298

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           D G   ++  GT  YV+PEV+    +  AVD W++G++ Y +L G  PF  +N  + F  
Sbjct: 170 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQ 229
Query: 300 VL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
           +L       +P +     +  D I+ L+EKDP KR 
Sbjct: 230 ILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  N
Sbjct: 170 EDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN 229
Query: 300 VLMKT----PEFVGQRTALT-DLIQRLLEKDPVKRL 330
           +   +     EF    + L  D I++LL K+  KRL
Sbjct: 230 ITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL 265

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           D G   ++  GT  YV+PEV+    +  AVD W++G++ Y +L G  PF  +N  + F  
Sbjct: 170 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQ 229
Query: 300 VL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
           +L       +P +     +  D I+ L+EKDP KR 
Sbjct: 230 ILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           D G   ++  GT  YV+PEV+    +  AVD W++G++ Y +L G  PF  +N  + F  
Sbjct: 170 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQ 229
Query: 300 VL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
           +L       +P +     +  D I+ L+EKDP KR 
Sbjct: 230 ILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA-ERRARWEIR 75
           ++  + L+ +G+G  G V+    +A D   R   ALK +    L A+ E     A  EI 
Sbjct: 20  MEKYQKLEKVGEGTYGVVY----KAKDSQGRI-VALKRI---RLDAEDEGIPSTAIREIS 71
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  L HP +  L+  + ++  L     +       VL   +N      S I+ YL +++
Sbjct: 72  LLKELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVL--DENKTGLQDSQIKIYLYQLL 129
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             + H H   I +RDLKP+N+LI   G + L DF L+R
Sbjct: 130 RGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR 167

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           D G   ++  GT  YV+PEV+    +  AVD W++G++ Y +L G  PF  +N  + F  
Sbjct: 170 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQ 229
Query: 300 VL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
           +L       +P +     +  D I+ L+EKDP KR 
Sbjct: 230 ILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 228
Query: 299 NVLMKT----PEFVGQRTALT-DLIQRLLEKDPVKRL 330
           N+   +     EF    + L  D I++LL K+  KRL
Sbjct: 229 NITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL 265

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  N
Sbjct: 170 EDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN 229
Query: 300 VLMKT----PEFVGQRTALT-DLIQRLLEKDPVKRL 330
           +   +     EF    + L  D I++LL K+  KRL
Sbjct: 230 ITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL 265

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA-ERRARWEIR 75
           ++  + L+ +G+G  G V+    +A D   R   ALK +    L A+ E     A  EI 
Sbjct: 20  MEKYQKLEKVGEGTYGVVY----KAKDSQGRI-VALKRI---RLDAEDEGIPSTAIREIS 71
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +L  L HP +  L+  + ++  L     +       VL   +N      S I+ YL +++
Sbjct: 72  LLKELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVL--DENKTGLQDSQIKIYLYQLL 129
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             + H H   I +RDLKP+N+LI   G + L DF L+R
Sbjct: 130 RGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR 167

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           LK +K+LG GA GTV+         T + P A+K+++++T     +A      E  +++ 
Sbjct: 40  LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT---GPKANVEFMDEALIMAS 96
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           + HP L +LLG   +   +       P G L    ++  D + S  ++ + + +I   + 
Sbjct: 97  MDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCV-QIAKGMM 154
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +L    + +RDL   N+L++   HV +TDF L+R L
Sbjct: 155 YLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL 190

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G+  ++  GT  YV+PEV+    +  AVD W++G++ Y +L G  PF  +N  + F  +L
Sbjct: 176 GDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQIL 235
Query: 302 MKTPEFVGQ-----RTALTDLIQRLLEKDPVKR 329
               EF          +  D I+ L+EKDP KR
Sbjct: 236 KAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKR 268

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 22/160 (13%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW------EIRVLS 78
           +LGKG  G V+   D              + ++  +  K   ER +R+      EI +  
Sbjct: 29  VLGKGTYGIVYAGRD--------------LSNQVRIAIKEIPERDSRYSQPLHEEIALHK 74
Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFYLSEIICA 137
            L H  + + LGS   + F+   +   PGG L+ +LR K      +   I FY  +I+  
Sbjct: 75  HLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEG 134
Query: 138 IEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFDLSRNLV 176
           +++LH+  I +RD+K +N+LI   SG + ++DF  S+ L 
Sbjct: 135 LKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLA 174

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 245 SNSFVGTEEYVSPEVV----RGDGHEFAVDWWALGILTYEMLYGTTPFR--GKNRKETFR 298
           + +F GT +Y++PE++    RG G   A D W+LG    EM  G  PF   G+ +   F+
Sbjct: 180 TETFTGTLQYMAPEIIDKGPRGYGK--AADIWSLGCTIIEMATGKPPFYELGEPQAAMFK 237
Query: 299 NVLMKT-PEFVGQRTALTD-LIQRLLEKDPVKR 329
             + K  PE     +A     I +  E DP KR
Sbjct: 238 VGMFKVHPEIPESMSAEAKAFILKCFEPDPDKR 270

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           LK +K+LG GA GTV+         T + P A+K+++++T     +A      E  +++ 
Sbjct: 17  LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT---GPKANVEFMDEALIMAS 73
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           + HP L +LLG   +   +       P G L    ++  D + S  ++ + + +I   + 
Sbjct: 74  MDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCV-QIAKGMM 131
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +L    + +RDL   N+L++   HV +TDF L+R L
Sbjct: 132 YLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL 167

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE---------IRV 76
           LG GA G V L  ++          A+KV+ KS       ++     E         I +
Sbjct: 44  LGSGAYGEVLLCKEKNGHSEK----AIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISL 99
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEI 134
           L  L HP + KL    E  ++      +  GG+L   ++   + D   + ++++    +I
Sbjct: 100 LKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMK----QI 155
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSG---HVTLTDFDLS 172
           +  I +LH   I +RD+KPENIL+       ++ + DF LS
Sbjct: 156 LSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLS 196

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           +ILG G  G V     +  +       A K++    +  K E +     EI V+++L H 
Sbjct: 95  EILGGGRFGQVH----KCEETATGLKLAAKIIKTRGMKDKEEVKN----EISVMNQLDHA 146
Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV------IRFYLSEIICA 137
            L +L  + E+   +   + Y  GG+L        DR+   S          ++ +I   
Sbjct: 147 NLIQLYDAFESKNDIVLVMEYVDGGELF-------DRIIDESYNLTELDTILFMKQICEG 199
Query: 138 IEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLSR 173
           I H+H M I + DLKPENIL   R +  + + DF L+R
Sbjct: 200 IRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLAR 237

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKT 304
           GT E+++PEVV  D   F  D W++G++ Y +L G +PF G N  ET  N+L     ++ 
Sbjct: 250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLED 309
Query: 305 PEFVGQRTALTDLIQRLLEKDPVKRL 330
            EF        + I +LL K+   R+
Sbjct: 310 EEFQDISEEAKEFISKLLIKEKSWRI 335

>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A Ruthenium Organometallic Ligand Ru1 Length = 312

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 111/313 (35%), Gaps = 83/313 (26%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDK------STLHAKHEAERRARWEIRVLS 78
           +LGKG  GTVF  H      T R   A+KV+ +      S L              +V +
Sbjct: 38  LLGKGGFGTVFAGHRL----TDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGA 93
Query: 79  RLSHPFLPKLLGSLETDE-FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
              HP + +LL   ET E F+       P  DL     ++      PS  R +  +++ A
Sbjct: 94  GGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPS--RCFFGQVVAA 151
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           I+H H+ G+ +RD+K ENILI           DL R   K   F   +L +++    P T
Sbjct: 152 IQHCHSRGVVHRDIKDENILI-----------DLRRGCAKLIDFGSGALLHDE----PYT 196
Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP 257
           +                                                 F GT  Y  P
Sbjct: 197 D-------------------------------------------------FDGTRVYSPP 207
Query: 258 E-VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTD 316
           E + R   H      W+LGIL Y+M+ G  PF    R +      +  P  V        
Sbjct: 208 EWISRHQYHALPATVWSLGILLYDMVCGDIPF---ERDQEILEAELHFPAHVSPDCCA-- 262
Query: 317 LIQRLLEKDPVKR 329
           LI+R L   P  R
Sbjct: 263 LIRRCLAPKPSSR 275

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 45/193 (23%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE-RRARWEIRVLSRLSHPF 84
           +G+G+ G V +    A +   R   A+K+++K+ +   +  +  R + E+R++ +L HP 
Sbjct: 34  IGQGSYGVVRV----AIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPN 89
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDL-----------------NVLRYK------QNDRV 121
           + +L    E ++++   +  C GG L                 +V++ +       N+  
Sbjct: 90  IARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEA 149
Query: 122 FSPSVIRF---------------YLSEIICAIEHLHNMGIAYRDLKPENILI--RQSGHV 164
            + S+  F                + +I  A+ +LHN GI +RD+KPEN L    +S  +
Sbjct: 150 INGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEI 209
Query: 165 TLTDFDLSRNLVK 177
            L DF LS+   K
Sbjct: 210 KLVDFGLSKEFYK 222

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 22/160 (13%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW------EIRVLS 78
           +LGKG  G V+   D              + ++  +  K   ER +R+      EI +  
Sbjct: 15  VLGKGTYGIVYAGRD--------------LSNQVRIAIKEIPERDSRYSQPLHEEIALHK 60
Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFYLSEIICA 137
            L H  + + LGS   + F+   +   PGG L+ +LR K      +   I FY  +I+  
Sbjct: 61  HLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEG 120
Query: 138 IEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDFDLSRNLV 176
           +++LH+  I +RD+K +N+LI   SG + ++DF  S+ L 
Sbjct: 121 LKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLA 160

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 245 SNSFVGTEEYVSPEVV----RGDGHEFAVDWWALGILTYEMLYGTTPFR--GKNRKETFR 298
           + +F GT +Y++PE++    RG G   A D W+LG    EM  G  PF   G+ +   F+
Sbjct: 166 TETFTGTLQYMAPEIIDKGPRGYGK--AADIWSLGCTIIEMATGKPPFYELGEPQAAMFK 223
Query: 299 NVLMKT-PEFVGQRTA-LTDLIQRLLEKDPVKR 329
             + K  PE     +A     I +  E DP KR
Sbjct: 224 VGMFKVHPEIPESMSAEAKAFILKCFEPDPDKR 256

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MK 303
             T E+ +PE+V  +   F  D WA+G+L Y +L G +PF G++  ET +NV        
Sbjct: 211 TATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFD 270
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIP 363
              F        D I+ LL+K+P KRL       +  EH + KG   +L +       IP
Sbjct: 271 EDAFSSVSPEAKDFIKNLLQKEPRKRL----TVHDALEHPWLKGDHSNLTSR------IP 320
Query: 364 SREENDLTEK 373
           S   N + +K
Sbjct: 321 SSRYNKIRQK 330

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           L+ +K+LG GA GTV+           + P A+KV+ ++T     +A +    E  V++ 
Sbjct: 19  LRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT---SPKANKEILDEAYVMAG 75
Query: 80  LSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +  P++ +LLG     T + +   +PY  G  L+ +R +   R+ S  ++ + + +I   
Sbjct: 76  VGSPYVSRLLGICLTSTVQLVTQLMPY--GCLLDHVR-ENRGRLGSQDLLNWCM-QIAKG 131
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL-VKKTAFEKQSLNNNKFPV 193
           + +L ++ + +RDL   N+L++   HV +TDF L+R L + +T +     +  K P+
Sbjct: 132 MSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHA---DGGKVPI 185

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +GKG+ G V+    +  D   +   A+K++D   L    +     + EI VLS+   P++
Sbjct: 27  IGKGSFGEVY----KGIDNHTKEVVAIKIID---LEEAEDEIEDIQQEITVLSQCDSPYI 79
Query: 86  PKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
            +  GS      L   + Y  GG  L++L+    +  +  +++R    EI+  +++LH+ 
Sbjct: 80  TRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGPLEETYIATILR----EILKGLDYLHSE 135
Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
              +RD+K  N+L+ + G V L DF ++  L 
Sbjct: 136 RKIHRDIKAANVLLSEQGDVKLADFGVAGQLT 167

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           Q  D   + N FVGT  +++PEV++   ++F  D W+LGI   E+  G  P    +    
Sbjct: 165 QLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRV 224
Query: 297 FRNVLMKTPEFV-GQRTA-LTDLIQRLLEKDP 326
              +   +P  + GQ +    + ++  L KDP
Sbjct: 225 LFLIPKNSPPTLEGQHSKPFKEFVEACLNKDP 256

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRV 76
           L+ L+ +G GA G+V      A D   R   A+K + +   S +HA     RR   E+R+
Sbjct: 30  LQGLRPVGSGAYGSVC----SAYDARLRQKVAVKKLSRPFQSLIHA-----RRTYRELRL 80
Query: 77  LSRLSHPFLPKLLG----SLETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           L  L H  +  LL     +   ++F   + V    G DLN +   Q     S   ++F +
Sbjct: 81  LKHLKHENVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQ---ALSDEHVQFLV 137
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
            +++  ++++H+ GI +RDLKP N+ + +   + + DF L+R 
Sbjct: 138 YQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQ 180

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 26  LGKGAMGTVF-LVHDRAADPTA--RCPFALKVVDKSTLHAKHEAERRARW--EIRVLSRL 80
           LG G  G V   +H    +  A  +C        +  L  K+    R RW  EI+++ +L
Sbjct: 23  LGTGGFGYVLRWIHQDTGEQVAIKQC--------RQELSPKN----RERWCLEIQIMKKL 70
Query: 81  SHPFL------PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +HP +      P  L  L  ++    A+ YC GGDL   L   +N        IR  LS+
Sbjct: 71  NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD 130
Query: 134 IICAIEHLHNMGIAYRDLKPENILIR 159
           I  A+ +LH   I +RDLKPENI+++
Sbjct: 131 ISSALRYLHENRIIHRDLKPENIVLQ 156

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF 288
           +  D GE    FVGT +Y++PE++    +   VD+W+ G L +E + G  PF
Sbjct: 173 KELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 224

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIR 75
           DN    + LGKGA    F V  R    T    FA K+++   L A+   + ER AR    
Sbjct: 29  DNYDVKEELGKGA----FSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR---- 80
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +  +L HP + +L  S++ + F         GG+L           +S +     + +I+
Sbjct: 81  ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQIL 138
Query: 136 CAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLS 172
            +I + H+ GI +R+LKPEN+L+    +   V L DF L+
Sbjct: 139 ESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 178

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           ++ E  + F GT  Y+SPEV++ D +   VD WA G++ Y +L G  PF  +++   +  
Sbjct: 182 NDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQ 241
Query: 300 VLMK-----TPEFVGQRTALTDLIQRLLEKDPVKRL 330
           +        +PE+         LI  +L  +P KR+
Sbjct: 242 IKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRI 277

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 26  LGKGAMGTVF-LVHDRAADPTA--RCPFALKVVDKSTLHAKHEAERRARW--EIRVLSRL 80
           LG G  G V   +H    +  A  +C        +  L  K+    R RW  EI+++ +L
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQC--------RQELSPKN----RERWCLEIQIMKKL 69
Query: 81  SHPFL------PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +HP +      P  L  L  ++    A+ YC GGDL   L   +N        IR  LS+
Sbjct: 70  NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD 129
Query: 134 IICAIEHLHNMGIAYRDLKPENILIR 159
           I  A+ +LH   I +RDLKPENI+++
Sbjct: 130 ISSALRYLHENRIIHRDLKPENIVLQ 155

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF 288
           +  D GE    FVGT +Y++PE++    +   VD+W+ G L +E + G  PF
Sbjct: 172 KELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 223

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +GKG+ G VF    +  D   +   A+K++D   L    +     + EI VLS+   
Sbjct: 28  LERIGKGSFGEVF----KGIDNRTQQVVAIKIID---LEEAEDEIEDIQQEITVLSQCDS 80
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
            ++ K  GS      L   + Y  GG  L++LR    D       I   L EI+  +++L
Sbjct: 81  SYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEF----QIATMLKEILKGLDYL 136
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           H+    +RD+K  N+L+ + G V L DF ++  L
Sbjct: 137 HSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQL 170

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           Q  D   + N+FVGT  +++PEV++   ++   D W+LGI   E+  G  P    +    
Sbjct: 169 QLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP---NSDMHP 225
Query: 297 FRNVLM----KTPEFVGQRT-ALTDLIQRLLEKDPVKR 329
            R + +      P  VG  T +  + I   L KDP  R
Sbjct: 226 MRVLFLIPKNNPPTLVGDFTKSFKEFIDACLNKDPSFR 263

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSN--SFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K+K A V            G++     F GT  Y+SPEV+R D +   VD W
Sbjct: 131 PENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMW 190
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPV 327
           A G++ Y +L G  PF  +++   ++ +        +PE+        DLI ++L  +P 
Sbjct: 191 ACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPA 250
Query: 328 KRL 330
           KR+
Sbjct: 251 KRI 253

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRV 76
           L+ L+ +G GA G+V      A D   R   A+K + +   S +HA     RR   E+R+
Sbjct: 30  LQGLRPVGSGAYGSVC----SAYDARLRQKVAVKKLSRPFQSLIHA-----RRTYRELRL 80
Query: 77  LSRLSHPFLPKLLG----SLETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           L  L H  +  LL     +   ++F   + V    G DLN +   Q     S   ++F +
Sbjct: 81  LKHLKHENVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQ---ALSDEHVQFLV 137
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
            +++  ++++H+ GI +RDLKP N+ + +   + + DF L+R 
Sbjct: 138 YQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQ 180

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 115/307 (37%), Gaps = 92/307 (29%)
Query: 40  RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFL 98
           R         +A+KV+DKS        +R    EI +L R   HP +  L    +  + +
Sbjct: 45  RCVHKATNMEYAVKVIDKS--------KRDPSEEIEILLRYGQHPNIITLKDVYDDGKHV 96
Query: 99  AWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENI 156
                   GG+L   +LR K     FS     F L  I   +E+LH+ G+ +RDLKP NI
Sbjct: 97  YLVTELMRGGELLDKILRQK----FFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNI 152
Query: 157 L-IRQSGH---VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLH 212
           L + +SG+   + + DF           F KQ    N   + P                 
Sbjct: 153 LYVDESGNPECLRICDF----------GFAKQLRAENGLLMTPC---------------- 186
Query: 213 ALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWW 272
                        +  V+P   ++Q +D G                           D W
Sbjct: 187 -----------YTANFVAPEVLKRQGYDEG--------------------------CDIW 209
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPEFV---GQRTALT----DLIQRLLE 323
           +LGIL Y ML G TPF      +T   +L +  + +F    G    ++    DL+ ++L 
Sbjct: 210 SLGILLYTMLAGYTPF-ANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLH 268
Query: 324 KDPVKRL 330
            DP +RL
Sbjct: 269 VDPHQRL 275

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 77  MKXVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 129
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 73  EIRVLSRLSHPFLPKLLGSL----ETDEFLAWA-VPYCPGGDLNVLRYKQNDRVFSPSVI 127
           EI +L +L HP + KL+  L    E   ++ +  V   P  ++  L+    D+       
Sbjct: 86  EIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQA------ 139
Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           RFY  ++I  IE+LH   I +RD+KP N+L+ + GH+ + DF +S       A    ++ 
Sbjct: 140 RFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVG 199
Query: 188 NNKFPVLPVTENPKRHRRILT 208
               P     E+    R+I +
Sbjct: 200 T---PAFMAPESLSETRKIFS 217

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 249 VGTEEYVSPEVVRGDGHEF---AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP 305
           VGT  +++PE +      F   A+D WA+G+  Y  ++G  PF  +        +  +  
Sbjct: 198 VGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQAL 257
Query: 306 EFVGQ---RTALTDLIQRLLEKDPVKRL 330
           EF  Q      L DLI R+L+K+P  R+
Sbjct: 258 EFPDQPDIAEDLKDLITRMLDKNPESRI 285

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 242 GERSNSFVGTEEYVSPEVVRGD------GHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           GE+     GT  Y++PE+++        G+   VD WA G++ + +L G+ PF  + +  
Sbjct: 253 GEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQIL 312
Query: 296 TFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             R ++       +PE+  + + + DLI RLL+ DP  RL     A +  +H FF+
Sbjct: 313 MLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARL----TAEQALQHPFFE 364

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIR 75
           DN    + LGKGA    F V  R    T    FA K+++   L A+   + ER AR    
Sbjct: 6   DNYDVKEELGKGA----FSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR---- 57
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +  +L HP + +L  S++ + F         GG+L           +S +     + +I+
Sbjct: 58  ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQIL 115
Query: 136 CAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLS 172
            +I + H+ GI +R+LKPEN+L+    +   V L DF L+
Sbjct: 116 ESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 155

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 215 PENKTGLKKTKSARVSPVS-RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K K A V           ++ E  + F GT  Y+SPEV++ D +   VD WA
Sbjct: 133 PENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWA 192
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNVLM-----KTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF  +++   +  +        +PE+         LI  +L  +P K
Sbjct: 193 CGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKK 252
Query: 329 RL 330
           R+
Sbjct: 253 RI 254

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIR 75
           DN    + LGKGA    F V  R    T    FA K+++   L A+   + ER AR    
Sbjct: 5   DNYDVKEELGKGA----FSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR---- 56
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +  +L HP + +L  S++ + F         GG+L           +S +     + +I+
Sbjct: 57  ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQIL 114
Query: 136 CAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLS 172
            +I + H+ GI +R+LKPEN+L+    +   V L DF L+
Sbjct: 115 ESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 154

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 215 PENKTGLKKTKSARVSPVS-RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K K A V           ++ E  + F GT  Y+SPEV++ D +   VD WA
Sbjct: 132 PENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWA 191
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNVLM-----KTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF  +++   +  +        +PE+         LI  +L  +P K
Sbjct: 192 CGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKK 251
Query: 329 RL 330
           R+
Sbjct: 252 RI 253

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV--DKSTLHAKHEAERRARWEIRVLSRL 80
           L+ +G+G  GTVF   +R          ALK V  D         A R    EI +L  L
Sbjct: 7   LEKIGEGTYGTVFKAKNRETHEIV----ALKRVRLDDDDEGVPSSALR----EICLLKEL 58
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIE 139
            H  + +L   L +D+ L     +C   D ++ +Y    +    P +++ +L +++  + 
Sbjct: 59  KHKNIVRLHDVLHSDKKLTLVFEFC---DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLG 115
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             H+  + +RDLKP+N+LI ++G + L DF L+R
Sbjct: 116 FCHSRNVLHRDLKPQNLLINRNGELKLADFGLAR 149

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRAR 71
           +D++N + ++ +G+G  G V+          AR     +VV    +    E E     A 
Sbjct: 4   VDMENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAI 54
Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            EI +L  L+HP + KLL  + T+  L     +    DL               +I+ YL
Sbjct: 55  REISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYL 113
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            +++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 114 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 155

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 61  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 114
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 115 MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 167
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 168 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 212

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIR 75
           DN    + LGKGA    F V  R    T    FA K+++   L A+   + ER AR    
Sbjct: 6   DNYDVKEELGKGA----FSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR---- 57
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +  +L HP + +L  S++ + F         GG+L           +S +     + +I+
Sbjct: 58  ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQIL 115
Query: 136 CAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLS 172
            +I + H+ GI +R+LKPEN+L+    +   V L DF L+
Sbjct: 116 ESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 155

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 215 PENKTGLKKTKSARVSPVS-RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWA 273
           PEN     K K A V           ++ E  + F GT  Y+SPEV++ D +   VD WA
Sbjct: 133 PENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWA 192
Query: 274 LGILTYEMLYGTTPFRGKNRKETFRNVLM-----KTPEFVGQRTALTDLIQRLLEKDPVK 328
            G++ Y +L G  PF  +++   +  +        +PE+         LI  +L  +P K
Sbjct: 193 CGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKK 252
Query: 329 RL 330
           R+
Sbjct: 253 RI 254

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 115/307 (37%), Gaps = 92/307 (29%)
Query: 40  RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFL 98
           R         +A+KV+DKS        +R    EI +L R   HP +  L    +  + +
Sbjct: 45  RCVHKATNMEYAVKVIDKS--------KRDPSEEIEILLRYGQHPNIITLKDVYDDGKHV 96
Query: 99  AWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENI 156
                   GG+L   +LR K     FS     F L  I   +E+LH+ G+ +RDLKP NI
Sbjct: 97  YLVTELMRGGELLDKILRQK----FFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNI 152
Query: 157 L-IRQSGH---VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLH 212
           L + +SG+   + + DF           F KQ    N   + P                 
Sbjct: 153 LYVDESGNPECLRICDF----------GFAKQLRAENGLLMTPC---------------- 186
Query: 213 ALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWW 272
                        +  V+P   ++Q +D G                           D W
Sbjct: 187 -----------YTANFVAPEVLKRQGYDEG--------------------------CDIW 209
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPEFV---GQRTALT----DLIQRLLE 323
           +LGIL Y ML G TPF      +T   +L +  + +F    G    ++    DL+ ++L 
Sbjct: 210 SLGILLYTMLAGYTPF-ANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLH 268
Query: 324 KDPVKRL 330
            DP +RL
Sbjct: 269 VDPHQRL 275

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 121/362 (33%), Gaps = 106/362 (29%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++  + L ++G+G+ G V    ++           L+  D   +      ++ A  EI++
Sbjct: 24  MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMV------KKIAMREIKL 77
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L +L H  L  LL   +  +       +     L+ L    N       V++ YL +II 
Sbjct: 78  LKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNG--LDYQVVQKYLFQIIN 135
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            I   H+  I +RD+KPENIL+ QSG V L DF  +R L                     
Sbjct: 136 GIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDE----------- 184
Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                    + TRW  A PE   G  K   A                             
Sbjct: 185 ---------VATRWYRA-PELLVGDVKYGKA----------------------------- 205
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM-------------- 302
                       VD WA+G L  EM  G   F G +  +   +++M              
Sbjct: 206 ------------VDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFN 253
Query: 303 KTPEFVGQR------------------TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
           K P F G R                    + DL ++ L  DP KR        E+  H F
Sbjct: 254 KNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKR----PFCAELLHHDF 309
Query: 345 FK 346
           F+
Sbjct: 310 FQ 311

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSN--SFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K+K A V            G++     F GT  Y+SPEV+R D +   VD W
Sbjct: 131 PENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMW 190
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPV 327
           A G++ Y +L G  PF  +++   ++ +        +PE+        DLI ++L  +P 
Sbjct: 191 ACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPA 250
Query: 328 KRL 330
           KR+
Sbjct: 251 KRI 253

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 61  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 114
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 115 MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 167
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 168 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 212

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       +LE  + +   +         V++ + +    S     + 
Sbjct: 77  MKXVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 77  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 129
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 174

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 24  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 77
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 78  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 130
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 131 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 17  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 70
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 71  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 123
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 124 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 168

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  + +K LG GA G V L  D+          A+K++ KS++     +      E+ VL
Sbjct: 4   DRYQRVKKLGSGAYGEVLLCKDKLTGAER----AIKIIKKSSVTTTSNSGALLD-EVAVL 58
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL---NVLRYKQNDRVFSPSVIRFYLSEI 134
            +L HP + KL    E        +    GG+L    +LR K     FS       + ++
Sbjct: 59  KQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-----FSEVDAAVIMKQV 113
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLS 172
           +    +LH   I +RDLKPEN+L+        + + DF LS
Sbjct: 114 LSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLS 154

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 22  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 75
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 76  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 128
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 129 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 173

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSN--SFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K K A V            GE+     F GT  Y+SPEV+R D +   VD W
Sbjct: 149 PENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLW 208
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPV 327
           A G++ Y +L G  PF  +++   ++ +        +PE+        DLI ++L  +P 
Sbjct: 209 ACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPS 268
Query: 328 KRL 330
           KR+
Sbjct: 269 KRI 271

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 24  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 77
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 78  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 130
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 131 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 69
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 70  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 122
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 123 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 77  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 129
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 130 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 174

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 18  DNLKALKILGKGAMGTVF-LVHDRAADPTARCPFALKVVDKS---TLHAKHEAERRARW- 72
           +N +  +ILG+G    V   +H     PT +  +A+K++D +   +  A+   E R    
Sbjct: 4   ENYEPKEILGRGVSSVVRRCIHK----PTCK-EYAVKIIDVTGGGSFSAEEVQELREATL 58
Query: 73  -EIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRF 129
            E+ +L ++S HP + +L  + ET+ F          G+L + L  K          I  
Sbjct: 59  KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMR 118
Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            L E+ICA   LH + I +RDLKPENIL+    ++ LTDF  S  L
Sbjct: 119 ALLEVICA---LHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL 161

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGD------GHEFAVDWWALGILTYEMLYGTTPFRGK 291
             D GE+     GT  Y++PE++         G+   VD W+ G++ Y +L G+ PF  +
Sbjct: 160 QLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR 219
Query: 292 NRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            +    R ++       +PE+      + DL+ R L   P KR      A E   H FF+
Sbjct: 220 KQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 275

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 17  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 70
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 71  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLCQVIQME--LDHERMS 123
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 124 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 168

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 18  DNLKALKILGKGAMGTVF-LVHDRAADPTARCPFALKVVDKS---TLHAKHEAERRARW- 72
           +N +  +ILG+G    V   +H     PT +  +A+K++D +   +  A+   E R    
Sbjct: 17  ENYEPKEILGRGVSSVVRRCIHK----PTCK-EYAVKIIDVTGGGSFSAEEVQELREATL 71
Query: 73  -EIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRF 129
            E+ +L ++S HP + +L  + ET+ F          G+L + L  K          I  
Sbjct: 72  KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMR 131
Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            L E+ICA   LH + I +RDLKPENIL+    ++ LTDF  S  L
Sbjct: 132 ALLEVICA---LHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL 174

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGD------GHEFAVDWWALGILTYEMLYGTTPFRGK 291
             D GE+     GT  Y++PE++         G+   VD W+ G++ Y +L G+ PF  +
Sbjct: 173 QLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR 232
Query: 292 NRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            +    R ++       +PE+      + DL+ R L   P KR      A E   H FF+
Sbjct: 233 KQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 64  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 120
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 121 LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 180
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K   
Sbjct: 181 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 240
Query: 181 FEKQS 185
           + ++ 
Sbjct: 241 YVRKG 245

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRV 76
           L+ L+ +G GA G+V      A D   R   A+K + +   S +HA     RR   E+R+
Sbjct: 22  LQGLRPVGSGAYGSVC----SAYDARLRQKVAVKKLSRPFQSLIHA-----RRTYRELRL 72
Query: 77  LSRLSHPFLPKLLG----SLETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           L  L H  +  LL     +   ++F   + V    G DLN +   Q     S   ++F +
Sbjct: 73  LKHLKHENVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQ---ALSDEHVQFLV 129
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
            +++  ++++H+ GI +RDLKP N+ + +   + + DF L+R 
Sbjct: 130 YQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQ 172

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 18  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 74
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 75  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXK 191

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  + +K LG GA G V L  D+          A+K++ KS++     +      E+ VL
Sbjct: 21  DRYQRVKKLGSGAYGEVLLCKDKLTGAER----AIKIIKKSSVTTTSNSGALLD-EVAVL 75
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL---NVLRYKQNDRVFSPSVIRFYLSEI 134
            +L HP + KL    E        +    GG+L    +LR K     FS       + ++
Sbjct: 76  KQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-----FSEVDAAVIMKQV 130
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLS 172
           +    +LH   I +RDLKPEN+L+        + + DF LS
Sbjct: 131 LSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLS 171

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 18  DNLKALKILGKGAMGTVF-LVHDRAADPTARCPFALKVVDKS---TLHAKHEAERRARW- 72
           +N +  +ILG+G    V   +H     PT +  +A+K++D +   +  A+   E R    
Sbjct: 17  ENYEPKEILGRGVSSVVRRCIHK----PTCK-EYAVKIIDVTGGGSFSAEEVQELREATL 71
Query: 73  -EIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRF 129
            E+ +L ++S HP + +L  + ET+ F          G+L + L  K          I  
Sbjct: 72  KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMR 131
Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            L E+ICA   LH + I +RDLKPENIL+    ++ LTDF  S  L
Sbjct: 132 ALLEVICA---LHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL 174

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRGD------GHEFAVDWWALGILTYEMLYGTTPFRGKN 292
            D GE+  S  GT  Y++PE++         G+   VD W+ G++ Y +L G+ PF  + 
Sbjct: 174 LDPGEKLRSVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK 233
Query: 293 RKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           +    R ++       +PE+      + DL+ R L   P KR      A E   H FF+
Sbjct: 234 QMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSN--SFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K K A V            GE+     F GT  Y+SPEV+R D +   VD W
Sbjct: 138 PENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLW 197
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPV 327
           A G++ Y +L G  PF  +++   ++ +        +PE+        DLI ++L  +P 
Sbjct: 198 ACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPS 257
Query: 328 KRL 330
           KR+
Sbjct: 258 KRI 260

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 13/204 (6%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           DN     ++G+G+ G V+L +D+  +       A+K V++       + +R  R EI +L
Sbjct: 26  DNYIIKHLIGRGSYGYVYLAYDKNTEKNV----AIKKVNR-MFEDLIDCKRILR-EITIL 79
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYC--PGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +RL   ++ +L   +  D+ L +   Y      D ++ +  +     +   I+  L  ++
Sbjct: 80  NRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLL 139
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL-VKKTAFEKQSLNNNKFPVL 194
                +H  GI +RDLKP N L+ Q   V + DF L+R +  +K       L  N+ P  
Sbjct: 140 LGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPG- 198
Query: 195 PVTENPKRH--RRILTRWLHALPE 216
           P  +N K+     ++TRW  A PE
Sbjct: 199 PHNKNLKKQLTSHVVTRWYRA-PE 221

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 83
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K   
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 203
Query: 181 FEKQS 185
           + ++ 
Sbjct: 204 YVRKG 208

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 83
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXK 200

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 29  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 85
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV-FSPSVIRFY-- 130
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V +  +    Y  
Sbjct: 86  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLYKD 145
Query: 131 ---LSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K   
Sbjct: 146 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 205
Query: 181 FEKQS 185
           + ++ 
Sbjct: 206 YVRKG 210

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 31/168 (18%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRV 76
           D+ +  + LGKGA    F V  R    T    +A K+++   L A+ H+   R   E R+
Sbjct: 31  DDYQLFEELGKGA----FSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLER---EARI 83
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE--- 133
              L HP + +L  S+  + F         GG+L           F   V R Y SE   
Sbjct: 84  CRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGEL-----------FEDIVAREYYSEADA 132
Query: 134 ------IICAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLS 172
                 I+ ++ H+H   I +RDLKPEN+L+    +   V L DF L+
Sbjct: 133 SHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLA 180

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSN--SFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K K A V            GE+     F GT  Y+SPEV+R D +   VD W
Sbjct: 158 PENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIW 217
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPV 327
           A G++ Y +L G  PF  +++ + ++ +        +PE+        +LI ++L  +P 
Sbjct: 218 ACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPA 277
Query: 328 KRL 330
           KR+
Sbjct: 278 KRI 280

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 83
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYK 200

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 3   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 53
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKPEN+LI   G + L DF L+R
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLAR 152

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 5   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIKSYLFQ 114
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKPEN+LI   G + L DF L+R
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLAR 154

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV--DKSTLHAKHEAERRARWEIRVLSRL 80
           L+ +G+G  GTVF   +R          ALK V  D         A R    EI +L  L
Sbjct: 7   LEKIGEGTYGTVFKAKNRETHEIV----ALKRVRLDDDDEGVPSSALR----EICLLKEL 58
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIE 139
            H  + +L   L +D+ L     +C   D ++ +Y    +    P +++ +L +++  + 
Sbjct: 59  KHKNIVRLHDVLHSDKKLTLVFEFC---DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLG 115
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             H+  + +RDLKP+N+LI ++G + L +F L+R
Sbjct: 116 FCHSRNVLHRDLKPQNLLINRNGELKLANFGLAR 149

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 3   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 53
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKPEN+LI   G + L DF L+R
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLAR 152

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 4   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 54
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 113
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKPEN+LI   G + L DF L+R
Sbjct: 114 LLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLAR 153

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D L   K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 28  DRLNLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 84
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRVFSPSVIRFY--- 130
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V   +    Y   
Sbjct: 85  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDLYKDF 144
Query: 131 --LSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
             L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXK 200

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 5   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKTFMDASALTGIPLPLIKSYLFQ 114
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 11  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 65
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 124
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
             +E+L      +RDL   NIL+     V + DF L++ L +   F K
Sbjct: 125 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFK 172

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKDFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKPEN+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLAR 151

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 18  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 74
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L     +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 75  LIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXK 191

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 18  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 74
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L     +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 75  LIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYK 191

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 25  ILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ILG+GA   VF   H +  D      FA+KV +  +     + + R   E  VL +L+H 
Sbjct: 16  ILGQGATANVFRGRHKKTGDL-----FAIKVFNNISFLRPVDVQMR---EFEVLKKLNHK 67
Query: 84  FLPKLLGSLE--TDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            + KL    E  T       + +CP G L  VL    N      S     L +++  + H
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNH 127
Query: 141 LHNMGIAYRDLKPENIL--IRQSGHVT--LTDFDLSRNLVKKTAF 181
           L   GI +R++KP NI+  I + G     LTDF  +R L     F
Sbjct: 128 LRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF 172

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 1   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 51
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEHV-HQDLKTFMDASALTGIPLPLIKSYLFQ 110
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 18  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 74
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV---FSPSVIR-- 128
           L  + H   +  LLG+  +    L     +C  G+L+  LR K+N+ V    +P  +   
Sbjct: 75  LIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 134
Query: 129 -FYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
              L  +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 135 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYK 191

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 25  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 78
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 79  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 133
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 134 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 177

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---- 303
           FV T  Y +PEV+ G G++  VD W++G +  EM+ G   F G +  + +  V+ +    
Sbjct: 187 FVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 246
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGY 332
            PEF+ +   L   ++  +E  P K  GY
Sbjct: 247 CPEFMKK---LQPTVRTYVENRP-KYAGY 271

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 28/182 (15%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-E 73
           +D   ++  +++G+GA G V     RA D       A+K ++        E+ER+A   E
Sbjct: 6   IDYKEIEVEEVVGRGAFGVVCKAKWRAKD------VAIKQIES-------ESERKAFIVE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLS 132
           +R LSR++HP + KL G+      L   + Y  GG L NVL   +    ++ +    +  
Sbjct: 53  LRQLSRVNHPNIVKLYGACLNPVCL--VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCL 110
Query: 133 EIICAIEHLHNM---GIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVKKTAFEKQSLNN 188
           +    + +LH+M    + +RDLKP N+L+   G V  + DF  + ++       +  + N
Sbjct: 111 QCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI-------QTHMTN 163
Query: 189 NK 190
           NK
Sbjct: 164 NK 165

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 175

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 25  ILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ILG+GA   VF   H +  D      FA+KV +  +     + + R   E  VL +L+H 
Sbjct: 16  ILGQGATANVFRGRHKKTGDL-----FAIKVFNNISFLRPVDVQMR---EFEVLKKLNHK 67
Query: 84  FLPKLLGSLE--TDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            + KL    E  T       + +CP G L  VL    N      S     L +++  + H
Sbjct: 68  NIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNH 127
Query: 141 LHNMGIAYRDLKPENIL--IRQSGHVT--LTDFDLSRNLVKKTAF 181
           L   GI +R++KP NI+  I + G     LTDF  +R L     F
Sbjct: 128 LRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF 172

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 175

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---- 303
           +V T  Y +PEV+ G G++  VD W++G +  EM+ G   F G +  + +  V+ +    
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGY 332
           +PEF+ +   L   ++  +E  P K  GY
Sbjct: 245 SPEFMKK---LQPTVRTYVENRP-KYAGY 269

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART 175

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---- 303
           +V T  Y +PEV+ G G++  VD W++G +  EM+ G   F G +  + +  V+ +    
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGY 332
           +PEF+ +   L   ++  +E  P K  GY
Sbjct: 245 SPEFMKK---LQPTVRTYVENRP-KYAGY 269

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 175

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 28  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 81
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 82  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 136
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 137 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 180

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 28/182 (15%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-E 73
           +D   ++  +++G+GA G V     RA D       A+K ++        E+ER+A   E
Sbjct: 5   IDYKEIEVEEVVGRGAFGVVCKAKWRAKD------VAIKQIES-------ESERKAFIVE 51
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLS 132
           +R LSR++HP + KL G+      L   + Y  GG L NVL   +    ++ +    +  
Sbjct: 52  LRQLSRVNHPNIVKLYGACLNPVCL--VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCL 109
Query: 133 EIICAIEHLHNM---GIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVKKTAFEKQSLNN 188
           +    + +LH+M    + +RDLKP N+L+   G V  + DF  + ++       +  + N
Sbjct: 110 QCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI-------QTHMTN 162
Query: 189 NK 190
           NK
Sbjct: 163 NK 164

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART 175

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---- 303
           +V T  Y +PEV+ G G++  VD W++G +  EM+ G   F G +  + +  V+ +    
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGY 332
           +PEF+ +   L   ++  +E  P K  GY
Sbjct: 245 SPEFMKK---LQPTVRTYVENRP-KYAGY 269

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK +  LGKG  G+V L  +D   D T     AL  V K   H+  + +R  + EI++L
Sbjct: 12  HLKYISQLGKGNFGSVELCRYDPLGDNTG----ALVAV-KQLQHSGPDQQRDFQREIQIL 66
Query: 78  SRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L   F+ K  G       + L   + Y P G L     +   R+   S +  Y S+I 
Sbjct: 67  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARL-DASRLLLYSSQIC 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L +    +RDL   NIL+    HV + DF L++ L
Sbjct: 126 KGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 165

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK +  LGKG  G+V L  +D   D T     AL  V K   H+  + +R  + EI++L
Sbjct: 11  HLKYISQLGKGNFGSVELCRYDPLGDNTG----ALVAV-KQLQHSGPDQQRDFQREIQIL 65
Query: 78  SRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L   F+ K  G       + L   + Y P G L     +   R+   S +  Y S+I 
Sbjct: 66  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARL-DASRLLLYSSQIC 124
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L +    +RDL   NIL+    HV + DF L++ L
Sbjct: 125 KGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 164

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK +  LGKG  G+V L  +D   D T     AL  V K   H+  + +R  + EI++L
Sbjct: 24  HLKYISQLGKGNFGSVELCRYDPLGDNTG----ALVAV-KQLQHSGPDQQRDFQREIQIL 78
Query: 78  SRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L   F+ K  G       + L   + Y P G L     +   R+   S +  Y S+I 
Sbjct: 79  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARL-DASRLLLYSSQIC 137
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L +    +RDL   NIL+    HV + DF L++ L
Sbjct: 138 KGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 177

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 24  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 77
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 78  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 132
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 133 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 176

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 174

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 17  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 70
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 71  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 125
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 126 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 169

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 4   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 54
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKDFMDASALTGIPLPLIKSYLFQ 113
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 114 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 153

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 175

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLSFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 5   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKDFMDASALTGIPLPLIKSYLFQ 114
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 9   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 59
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 60  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 118
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 119 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 158

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 3   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 53
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 152

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 3   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 53
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 152

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTP 305
           T  Y +PE++  +G++ + D W+LG++ Y ML G  PF+  +R  T  + +     +K  
Sbjct: 172 TLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKG 231
Query: 306 EFVGQRTA-------LTDLIQRLLEKDPVKRL 330
           +F  +  A         DLIQ LL  DP KRL
Sbjct: 232 DFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRL 263

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 5   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 114
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 4   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 54
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 113
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 114 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 153

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 1   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 51
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 4   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 54
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 55  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 113
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 114 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 153

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 1   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 51
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 5   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 114
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 1   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 51
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 6   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 56
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 57  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 115
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 116 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 155

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 3   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 53
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 54  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 152

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 215 PENKTGLKKTKSARVSPVSRRQQSFDNGERSN--SFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K K A V            G++     F GT  Y+SPEV+R + +   VD W
Sbjct: 131 PENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKEAYGKPVDIW 190
Query: 273 ALGILTYEMLYGTTPFRGKNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPV 327
           A G++ Y +L G  PF  +++ + ++ +        +PE+        +LI ++L  +P 
Sbjct: 191 ACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPA 250
Query: 328 KRL 330
           KR+
Sbjct: 251 KRI 253

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 9   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 59
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 60  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 118
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 119 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 158

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 5   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 55
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 56  ISLLKELNHPNIVKLLDVIHTENKLYLVFEHV-DQDLKKFMDASALTGIPLPLIKSYLFQ 114
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 115 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 2   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALXKIRLDTETEGVPSTAIRE 52
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 53  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 111
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++N + ++ +G+G  G V+          AR     +VV    +    E E     A  E
Sbjct: 1   MENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALXKIRLDTETEGVPSTAIRE 51
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           I +L  L+HP + KLL  + T+  L     +    DL               +I+ YL +
Sbjct: 52  ISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQ 110
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 111 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           DN +   ++G+G+ G V+L +D+ A+       A+K V++       + +R  R EI +L
Sbjct: 28  DNYEIKHLIGRGSYGYVYLAYDKNANKNV----AIKKVNR-MFEDLIDCKRILR-EITIL 81
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYC--PGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           +RL   ++ +L   +  ++ L +   Y      D ++ +  +     +   ++  L  ++
Sbjct: 82  NRLKSDYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKTPIFLTEQHVKTILYNLL 141
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              + +H  GI +RDLKP N L+ Q   V + DF L+R +
Sbjct: 142 LGEKFIHESGIIHRDLKPANCLLNQDCSVKICDFGLARTI 181

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 42  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 96
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 97  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 155
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 156 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 195

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 14  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 68
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 69  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 127
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 128 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 16  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 70
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 71  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 129
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 130 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 169

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 18  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 72
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 73  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 131
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 132 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 171

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 29  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 83
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 84  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 142
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 143 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 182

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 11  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 65
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 124
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 125 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 29  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 83
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 84  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 142
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 143 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 182

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 15  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 69
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 70  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 128
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 129 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 168

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 175

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---- 303
           +V T  Y +PEV+ G G++  VD W++G +  EM+ G   F G +  + +  V+ +    
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGY 332
           +PEF+ +   L   ++  +E  P K  GY
Sbjct: 245 SPEFMKK---LQPTVRTYVENRP-KYAGY 269

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 17  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 71
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 72  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 130
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 131 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 170

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 11  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 65
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 124
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 125 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 10  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 64
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 65  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 123
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 124 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 163

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 9   HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 63
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 64  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 122
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 123 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 162

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+G+ G V +    A     R   A K + K  +    E   R + EI ++  L HP +
Sbjct: 34  IGRGSWGEVKI----AVQKGTRIRRAAKKIPKYFV----EDVDRFKQEIEIMKSLDHPNI 85
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            +L  + E +  +   +  C GG+L       + RVF  S     + +++ A+ + H + 
Sbjct: 86  IRLYETFEDNTDIYLVMELCTGGEL--FERVVHKRVFRESDAARIMKDVLSAVAYCHKLN 143
Query: 146 IAYRDLKPENILI---RQSGHVTLTDFDLS 172
           +A+RDLKPEN L         + L DF L+
Sbjct: 144 VAHRDLKPENFLFLTDSPDSPLKLIDFGLA 173

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF 297
           F  G+   + VGT  YVSP+V+ G  G E   D W+ G++ Y +L G  PF      E  
Sbjct: 176 FKPGKMMRTKVGTPYYVSPQVLEGLYGPE--CDEWSAGVMMYVLLCGYPPFSAPTDXEVM 233
Query: 298 RNVLMKT---PE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             +   T   PE  ++        LI+RLL K P +R+  L+      EH +F+
Sbjct: 234 LKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQAL----EHEWFE 283

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V      A D       A+K + +   +  H   +RA  E+ +
Sbjct: 21  LKRYQQLKPIGSGAQGIVC----AAFDTVLGINVAVKKLSRPFQNQTHA--KRAYRELVL 74
Query: 77  LSRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           L  ++H  +  LL      + L      + V      +L  + + + D       + + L
Sbjct: 75  LKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIHMELDH----ERMSYLL 130
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
            +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 131 YQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 173

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWEI 74
           +N + ++ +G+G  G V+          AR     +VV    +    E E     A  EI
Sbjct: 2   ENFQKVEKIGEGTYGVVY---------KARNKLTGEVVALKKIRLDTETEGVPSTAIREI 52
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            +L  L+HP + KLL  + T+  L     +    DL               +I+ YL ++
Sbjct: 53  SLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL 111
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +  +   H+  + +RDLKP+N+LI   G + L DF L+R
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+G+ G V +    A     R   A K + K  +    E   R + EI ++  L HP +
Sbjct: 17  IGRGSWGEVKI----AVQKGTRIRRAAKKIPKYFV----EDVDRFKQEIEIMKSLDHPNI 68
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            +L  + E +  +   +  C GG+L       + RVF  S     + +++ A+ + H + 
Sbjct: 69  IRLYETFEDNTDIYLVMELCTGGEL--FERVVHKRVFRESDAARIMKDVLSAVAYCHKLN 126
Query: 146 IAYRDLKPENILI---RQSGHVTLTDFDLS 172
           +A+RDLKPEN L         + L DF L+
Sbjct: 127 VAHRDLKPENFLFLTDSPDSPLKLIDFGLA 156

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 239 FDNGERSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF 297
           F  G+   + VGT  YVSP+V+ G  G E   D W+ G++ Y +L G  PF      E  
Sbjct: 159 FKPGKMMRTKVGTPYYVSPQVLEGLYGPE--CDEWSAGVMMYVLLCGYPPFSAPTDXEVM 216
Query: 298 RNVLMKT---PE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             +   T   PE  ++        LI+RLL K P +R+  L+      EH +F+
Sbjct: 217 LKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQAL----EHEWFE 266

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTLHAKHEAERRARWEIR 75
           D  +  +++GKG     F V  R  +      FA+K+VD  K T       E   R E  
Sbjct: 26  DVYELCEVIGKGP----FSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKR-EAS 80
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR--VFSPSVIRFYLSE 133
           +   L HP + +LL +  +D  L     +  G DL     K+ D   V+S +V   Y+ +
Sbjct: 81  ICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQ 140
Query: 134 IICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNL 175
           I+ A+ + H+  I +RD+KP  +L+     S  V L  F ++  L
Sbjct: 141 ILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQL 185

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           Q  ++G  +   VGT  +++PEVV+ + +   VD W  G++ + +L G  PF G  ++  
Sbjct: 184 QLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERL 242
Query: 297 FRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
           F  ++     M   ++     +  DL++R+L  DP +R+
Sbjct: 243 FEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERI 281

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTLHAKHEAERRARWEIR 75
           D  +  +++GKG     F V  R  +      FA+K+VD  K T       E   R E  
Sbjct: 24  DVYELCEVIGKGP----FSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKR-EAS 78
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR--VFSPSVIRFYLSE 133
           +   L HP + +LL +  +D  L     +  G DL     K+ D   V+S +V   Y+ +
Sbjct: 79  ICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQ 138
Query: 134 IICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNL 175
           I+ A+ + H+  I +RD+KP  +L+     S  V L  F ++  L
Sbjct: 139 ILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQL 183

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           Q  ++G  +   VGT  +++PEVV+ + +   VD W  G++ + +L G  PF G  ++  
Sbjct: 182 QLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERL 240
Query: 297 FRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
           F  ++     M   ++     +  DL++R+L  DP +R+
Sbjct: 241 FEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERI 279

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V      A D       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQQLKPIGSGAQGIVC----AAFDTVLGINVAVKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           L  ++H  +  LL      + L      + V      +L  + + + D       + + L
Sbjct: 77  LKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIHMELDH----ERMSYLL 132
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
            +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 133 YQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 175

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKV-VDKSTLHAKHEAERRAR 71
           S++ D+ +  +++G GA   V           A C P   KV + +  L     +     
Sbjct: 11  SINRDDYELQEVIGSGATAVV---------QAAYCAPKKEKVAIKRINLEKCQTSMDELL 61
Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRY-----KQNDRVFSPS 125
            EI+ +S+  HP +     S    + L   +    GG  L+++++     +    V   S
Sbjct: 62  KEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDES 121
Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF----------DLSRNL 175
            I   L E++  +E+LH  G  +RD+K  NIL+ + G V + DF          D++RN 
Sbjct: 122 TIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNK 181
Query: 176 VKKT 179
           V+KT
Sbjct: 182 VRKT 185

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 12  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 66
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L     K  +R+    +++ Y S+I 
Sbjct: 67  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQIC 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
             +E+L      +R+L   NIL+     V + DF L++ L +   + K
Sbjct: 126 KGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYK 173

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 42  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 98
Query: 80  LSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG     T + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 99  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 154
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 155 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 192

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+G+ G VF   +R           L+  D   +      ++ A  EIR+L +L HP L
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVI------KKIALREIRMLKQLKHPNL 64
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVL-RYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
             LL        L     YC    L+ L RY+   R     +++    + + A+   H  
Sbjct: 65  VNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQ---RGVPEHLVKSITWQTLQAVNFCHKH 121
Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
              +RD+KPENILI +   + L DF  +R L   + +
Sbjct: 122 NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY 158

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKV-VDKSTLHAKHEAERRAR 71
           S++ D+ +  +++G GA   V           A C P   KV + +  L     +     
Sbjct: 6   SINRDDYELQEVIGSGATAVV---------QAAYCAPKKEKVAIKRINLEKCQTSMDELL 56
Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD-LNVLRY-----KQNDRVFSPS 125
            EI+ +S+  HP +     S    + L   +    GG  L+++++     +    V   S
Sbjct: 57  KEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDES 116
Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF----------DLSRNL 175
            I   L E++  +E+LH  G  +RD+K  NIL+ + G V + DF          D++RN 
Sbjct: 117 TIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNK 176
Query: 176 VKKT 179
           V+KT
Sbjct: 177 VRKT 180

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 75
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 76  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 131
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 132 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 169

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 76
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 77  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 132
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 133 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 170

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK +  LGKG  G+V L  +D   D T     AL  V K   H+  + +R  + EI++L
Sbjct: 8   HLKYISQLGKGNFGSVELCRYDPLGDNTG----ALVAV-KQLQHSGPDQQRDFQREIQIL 62
Query: 78  SRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L   F+ K  G         L   + Y P G L     +   R+   S +  Y S+I 
Sbjct: 63  KALHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRHRARL-DASRLLLYSSQIC 121
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L +    +RDL   NIL+    HV + DF L++ L
Sbjct: 122 KGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 161

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 23  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 79
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 80  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 135
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 136 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 173

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 76
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 77  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 132
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 133 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 170

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 27  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 83
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 84  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 139
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 140 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 177

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 76
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 77  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 132
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 133 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 170

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 73
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 74  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 129
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           LD +++K   ++G+G  G V  +  R      R   A+K + +   +A  +  R    E+
Sbjct: 22  LDWNDIKFQDVIGEGNFGQV--LKARIKKDGLRMDAAIKRMKE---YASKDDHRDFAGEL 76
Query: 75  RVLSRLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF----------- 122
            VL +L H P +  LLG+ E   +L  A+ Y P G  N+L + +  RV            
Sbjct: 77  EVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG--NLLDFLRKSRVLETDPAFAIANS 134
Query: 123 -----SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN--- 174
                S   +  + +++   +++L      +RDL   NIL+ ++    + DF LSR    
Sbjct: 135 TASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV 194
Query: 175 LVKKT 179
            VKKT
Sbjct: 195 YVKKT 199

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 73
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 74  VDNPHVCRLLGICLTSTVQLITQLMPF--GXLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 129
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 73
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 74  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 129
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 14  HLKFLRQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 68
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + + P G L     K  +R+    +++ Y S+I 
Sbjct: 69  KSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQ-YTSQIC 127
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 128 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 24  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 80
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 81  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 136
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 137 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 174

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 16/181 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D L   K LG+GA G V        D TA     A+K++ +   H++H A      E+++
Sbjct: 27  DRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMS---ELKI 83
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRVFSPSVIRFYLS- 132
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V    + + +L+ 
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTL 143
Query: 133 -EIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ 184
             +IC        +E L +    +RDL   NIL+ +   V + DF L+R++ K   + ++
Sbjct: 144 EHLICYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRK 203
Query: 185 S 185
Sbjct: 204 G 204

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           LD +++K   ++G+G  G V  +  R      R   A+K + +   +A  +  R    E+
Sbjct: 12  LDWNDIKFQDVIGEGNFGQV--LKARIKKDGLRMDAAIKRMKE---YASKDDHRDFAGEL 66
Query: 75  RVLSRLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF----------- 122
            VL +L H P +  LLG+ E   +L  A+ Y P G  N+L + +  RV            
Sbjct: 67  EVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG--NLLDFLRKSRVLETDPAFAIANS 124
Query: 123 -----SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN--- 174
                S   +  + +++   +++L      +RDL   NIL+ ++    + DF LSR    
Sbjct: 125 TASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV 184
Query: 175 LVKKT 179
            VKKT
Sbjct: 185 YVKKT 189

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 18  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 74
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 75  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 130
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 131 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 168

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 73
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 74  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 129
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 75
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 76  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 131
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 132 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 169

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 20  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 76
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 77  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 132
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 133 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 170

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 67
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 68  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 123
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 124 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 161

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 18  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 74
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 75  VDNPHVCRLLGICLTSTVQLIMQLMPF--GXLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 130
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 131 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 168

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKSQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLCRH 174

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 21  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 77
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 78  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 133
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 134 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 171

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 22/195 (11%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RW 72
           + L  ++ ++ LG+   G V+  H     P  +     + V   TL  K E   R   R 
Sbjct: 6   ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQT----QAVAIKTLKDKAEGPLREEFRH 61
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN---VLRYKQND---------- 119
           E  + +RL HP +  LLG +  D+ L+    YC  GDL+   V+R   +D          
Sbjct: 62  EAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTV 121
Query: 120 -RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
                P      +++I   +E+L +  + ++DL   N+L+    +V ++D  L R +   
Sbjct: 122 KSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAA 181
Query: 179 TAFEKQSLNNNKFPV 193
             +  + L N+  P+
Sbjct: 182 DYY--KLLGNSLLPI 194

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 42/189 (22%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           KILG G+ GTV         P A     +   D + +            EI++L+    H
Sbjct: 39  KILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALM------------EIKLLTESDDH 86
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV----------FSPSVIRFYLS 132
           P + +   S  TD FL  A+  C   +LN+    ++  V          ++P  +   L 
Sbjct: 87  PNVIRYYCSETTDRFLYIALELC---NLNLQDLVESKNVSDENLKLQKEYNPISL---LR 140
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-------------LTDFDLSRNLVKKT 179
           +I   + HLH++ I +RDLKP+NIL+  S   T             ++DF L + L    
Sbjct: 141 QIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQ 200
Query: 180 AFEKQSLNN 188
              + +LNN
Sbjct: 201 XXFRXNLNN 209

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 42/189 (22%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           KILG G+ GTV         P A     +   D + +            EI++L+    H
Sbjct: 39  KILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALM------------EIKLLTESDDH 86
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV----------FSPSVIRFYLS 132
           P + +   S  TD FL  A+  C   +LN+    ++  V          ++P  +   L 
Sbjct: 87  PNVIRYYCSETTDRFLYIALELC---NLNLQDLVESKNVSDENLKLQKEYNPISL---LR 140
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-------------LTDFDLSRNLVKKT 179
           +I   + HLH++ I +RDLKP+NIL+  S   T             ++DF L + L    
Sbjct: 141 QIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQ 200
Query: 180 AFEKQSLNN 188
              + +LNN
Sbjct: 201 XXFRXNLNN 209

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARH 174

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 14  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 70
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 71  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAEG 126
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 127 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 164

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 42/189 (22%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           KILG G+ GTV         P A     +   D             A  EI++L+    H
Sbjct: 21  KILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDI------------ALMEIKLLTESDDH 68
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV----------FSPSVIRFYLS 132
           P + +   S  TD FL  A+  C   +LN+    ++  V          ++P  +   L 
Sbjct: 69  PNVIRYYCSETTDRFLYIALELC---NLNLQDLVESKNVSDENLKLQKEYNPISL---LR 122
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-------------LTDFDLSRNLVKKT 179
           +I   + HLH++ I +RDLKP+NIL+  S   T             ++DF L + L    
Sbjct: 123 QIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQ 182
Query: 180 AFEKQSLNN 188
           +  + +LNN
Sbjct: 183 SSFRTNLNN 191

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 22/195 (11%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RW 72
           + L  ++ ++ LG+   G V+  H     P  +     + V   TL  K E   R   R 
Sbjct: 23  ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQT----QAVAIKTLKDKAEGPLREEFRH 78
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN---VLRYKQND---------- 119
           E  + +RL HP +  LLG +  D+ L+    YC  GDL+   V+R   +D          
Sbjct: 79  EAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTV 138
Query: 120 -RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
                P      +++I   +E+L +  + ++DL   N+L+    +V ++D  L R +   
Sbjct: 139 KSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAA 198
Query: 179 TAFEKQSLNNNKFPV 193
             +  + L N+  P+
Sbjct: 199 DYY--KLLGNSLLPI 211

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 29  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 77
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 78  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 134
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 135 QILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARH 176

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 33  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 81
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 82  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 138
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 139 QILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARH 180

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       +LE  + +   +         V++ + +    S     + 
Sbjct: 77  MKXVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           L +++  I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 132 LYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 18  DNLKALKILGKGAMGTVF-LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++LK L  +G+GA G+V  +VH     P+ +   A+K + +ST+  K + +     ++ V
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHK----PSGQI-MAVKRI-RSTVDEKEQKQLLMDLDV-V 74
Query: 77  LSRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           +     P++ +  G+L  E D ++   +            Y   D V    ++       
Sbjct: 75  MRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLAT 134
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           + A+ HL  N+ I +RD+KP NIL+ +SG++ L DF +S  LV   A
Sbjct: 135 VKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA 181

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           +L++  LK L+ +GKG  G V L   R      +C              K++A  +A   
Sbjct: 17  ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC-------------IKNDATAQAFLA 63
Query: 73  EIRVLSRLSHPFLPKLLGSL-ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFY 130
           E  V+++L H  L +LLG + E    L     Y   G L + LR +    +    +++F 
Sbjct: 64  EASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS 123
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
           L ++  A+E+L      +RDL   N+L+ +     ++DF L++           + +  K
Sbjct: 124 L-DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE-------ASSTQDTGK 175
Query: 191 FPVLPVTENPKRHRRILTR 209
            PV        R ++  T+
Sbjct: 176 LPVKWTAPEALREKKFSTK 194

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 32  LSPIGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 80
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 81  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 137
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 138 QILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARH 179

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K++G G+ G VF      +D         +V  K  L  K    R    E++++  + HP
Sbjct: 46  KVIGNGSFGVVFQAKLVESD---------EVAIKKVLQDKRFKNR----ELQIMRIVKHP 92
Query: 84  FLPKLL------GSLETDEFLAWAVPYCPGGDLNVLR-YKQNDRVFSPSVIRFYLSEIIC 136
            +  L       G  + + FL   + Y P       R Y +  +     +I+ Y+ +++ 
Sbjct: 93  NVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLR 152
Query: 137 AIEHLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLV 176
           ++ ++H++GI +RD+KP+N+L+   SG + L DF  ++ L+
Sbjct: 153 SLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILI 193

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 39  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSKPF------QSIIHAK-----RTYRELRLL 87
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 88  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 144
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 145 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 186

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 42/189 (22%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           KILG G+ GTV         P A     +   D + +            EI++L+    H
Sbjct: 21  KILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALM------------EIKLLTESDDH 68
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV----------FSPSVIRFYLS 132
           P + +   S  TD FL  A+  C   +LN+    ++  V          ++P  +   L 
Sbjct: 69  PNVIRYYCSETTDRFLYIALELC---NLNLQDLVESKNVSDENLKLQKEYNPISL---LR 122
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-------------LTDFDLSRNLVKKT 179
           +I   + HLH++ I +RDLKP+NIL+  S   T             ++DF L + L    
Sbjct: 123 QIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQ 182
Query: 180 AFEKQSLNN 188
              + +LNN
Sbjct: 183 XXFRXNLNN 191

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA--ERRARWEIRVLSRLS 81
           + +  G+ G V    D    P A       V D  T++   ++   +R   EIR+L+   
Sbjct: 28  RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFH 87
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPG---------GDLNVLRYKQNDRVFSPSVIRFYLS 132
           HP    +LG    D F+ +  P              DL  + + Q   V SP  I++++ 
Sbjct: 88  HP---NILGL--RDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQR-IVISPQHIQYFMY 141
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            I+  +  LH  G+ +RDL P NIL+  +  +T+ DF+L+R
Sbjct: 142 HILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAR 182

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA--ERRARWEIRVLSRLS 81
           + +  G+ G V    D    P A       V D  T++   ++   +R   EIR+L+   
Sbjct: 28  RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFH 87
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPG---------GDLNVLRYKQNDRVFSPSVIRFYLS 132
           HP    +LG    D F+ +  P              DL  + + Q   V SP  I++++ 
Sbjct: 88  HP---NILGL--RDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQR-IVISPQHIQYFMY 141
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            I+  +  LH  G+ +RDL P NIL+  +  +T+ DF+L+R
Sbjct: 142 HILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAR 182

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 38  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 86
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 87  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 143
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 144 QILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARH 185

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 156 IASGMKYLSDMGFVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 26/198 (13%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +N++ ++ +G+GA G VF    RA       PF +  V      A  + +   + E  ++
Sbjct: 47  NNIEYVRDIGEGAFGRVF--QARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM 104
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN----------VLRYKQND-----RVF 122
           +   +P + KLLG     + +     Y   GDLN          V     +D     RV 
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 164
Query: 123 SPSVIRFYLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           SP       +E +C        + +L      +RDL   N L+ ++  V + DF LSRN+
Sbjct: 165 SPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 224
Query: 176 VKKTAFEKQSLNNNKFPV 193
                ++     N+  P+
Sbjct: 225 YSADYYKAD--GNDAIPI 240

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 77  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLXQVIQME--LDHERMS 129
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++  I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 130 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR 174

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +   +  H   +RA  E+ +
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNV----AIKKLSRPFQNQTHA--KRAYRELVL 69
Query: 77  LSRLSHPFLPKLLG------SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +  ++H  +  LL       +LE   D +L   +      D N+ +  Q +       + 
Sbjct: 70  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-----MDANLXQVIQME--LDHERMS 122
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + L +++  I+HLH+ GI +RDLKP NI+++    + + DF L+R
Sbjct: 123 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR 167

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 32  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 80
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 81  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 137
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 138 QILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARH 179

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 33  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 81
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 82  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 138
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 139 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 180

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 38  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 86
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 87  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 143
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 144 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 185

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           +L++  LK L+ +GKG  G V L   R      +C              K++A  +A   
Sbjct: 189 ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC-------------IKNDATAQAFLA 235
Query: 73  EIRVLSRLSHPFLPKLLGSL-ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFY 130
           E  V+++L H  L +LLG + E    L     Y   G L + LR +    +    +++F 
Sbjct: 236 EASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS 295
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
           L ++  A+E+L      +RDL   N+L+ +     ++DF L++           + +  K
Sbjct: 296 L-DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE-------ASSTQDTGK 347
Query: 191 FPVLPVTENPKRHRRILTR 209
            PV        R ++  T+
Sbjct: 348 LPVKWTAPEALREKKFSTK 366

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           +L++  LK L+ +GKG  G V L   R      +C              K++A  +A   
Sbjct: 2   ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC-------------IKNDATAQAFLA 48
Query: 73  EIRVLSRLSHPFLPKLLGSL-ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFY 130
           E  V+++L H  L +LLG + E    L     Y   G L + LR +    +    +++F 
Sbjct: 49  EASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS 108
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
           L ++  A+E+L      +RDL   N+L+ +     ++DF L++           + +  K
Sbjct: 109 L-DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE-------ASSTQDTGK 160
Query: 191 FPVLPVTENPKRHRRILTR 209
            PV        R ++  T+
Sbjct: 161 LPVKWTAPEALREKKFSTK 179

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 39  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 87
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 88  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 144
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 145 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 186

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 39  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 87
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 88  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 144
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 145 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 186

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 33  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 81
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 82  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 138
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 139 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 180

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 24/164 (14%)
Query: 21  KALKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           + L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R
Sbjct: 48  QNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELR 96
Query: 76  VLSRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +L  + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F 
Sbjct: 97  LLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFL 153
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           + +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 154 IYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 197

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 34  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 82
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 83  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 139
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 140 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 181

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 34  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 82
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 83  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 139
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 140 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 181

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 34  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 82
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 83  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 139
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 140 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 181

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 32  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 80
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 81  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 137
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 138 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 179

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 26  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 74
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 75  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 131
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 132 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 173

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 34  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 82
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 83  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 139
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 140 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 181

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 47  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 95
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 96  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 152
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 153 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 194

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 29  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 77
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 78  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 134
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 135 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 176

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 29  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 77
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 78  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 134
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 135 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 176

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 46  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 94
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 95  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 151
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 152 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 193

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 33  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 81
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 82  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 138
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 139 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 180

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 46  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 94
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 95  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 151
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 152 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 193

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 24  KILGKGAMGTVFLVHDRAADPTA-RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +++GKG  G V+  H    D    R   A+K + + T   + EA  R   E  ++  L+H
Sbjct: 27  RVIGKGHFGVVY--HGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLR---EGLLMRGLNH 81
Query: 83  PFLPKLLGSLETDEFLAWAV-PY-CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
           P +  L+G +   E L   + PY C G  L  +R  Q +      +I F L ++   +E+
Sbjct: 82  PNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVK-DLISFGL-QVARGMEY 139
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           L      +RDL   N ++ +S  V + DF L+R+++ +  +  Q   + + PV
Sbjct: 140 LAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPV 192

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVVAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++  I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART 175

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---- 303
           +V T  Y +PEV+ G G++  VD W++G++  EM+ G   F G +  + +  V+ +    
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 304 TPEFV 308
           +PEF+
Sbjct: 245 SPEFM 249

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 24  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 72
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 73  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 129
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 130 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 171

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 37  LAPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 85
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 86  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 142
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 143 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 184

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 47  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 95
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 96  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 152
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 153 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 194

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 50  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 98
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 99  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 155
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 156 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 197

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 47  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 95
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 96  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 152
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 153 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 194

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 32  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 80
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 81  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 137
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 138 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 179

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 23  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 71
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 72  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 128
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 129 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 170

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 29  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 77
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 78  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 134
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 135 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 176

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 24  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 72
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 73  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 129
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 130 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 171

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 30  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 84
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 85  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 143
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 144 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 185

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 13  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 67
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 68  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 126
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 127 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 168

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 23  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 71
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 72  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 128
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 129 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 170

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 142/392 (36%), Gaps = 124/392 (31%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L + + ++ +G+G  G VF   ++  D    C +A+K +    L  +  A  +   E++ 
Sbjct: 5   LTDFEPIQCMGRGGFGVVFEAKNKVDD----CNYAIKRI---RLPNRELAREKVMREVKA 57
Query: 77  LSRLSHPFLPKLLGS-LET---------------DEFLAWAVPYCPGGDLNVLRYKQNDR 120
           L++L HP + +   + LET               DE   W +      D   ++ ++ D 
Sbjct: 58  LAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDP 117
Query: 121 V--------FSPSVIRFYLS----------------------------------EIICAI 138
                      PS  + YL                                   +I  A+
Sbjct: 118 FSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAV 177
Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTE 198
           E LH+ G+ +RDLKP NI       V + D                      F ++   +
Sbjct: 178 EFLHSKGLMHRDLKPSNIFFTMDDVVKVGD----------------------FGLVTAMD 215
Query: 199 NPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE 258
             +  + +LT     +P   T   +                         VGT+ Y+SPE
Sbjct: 216 QDEEEQTVLT----PMPAYATHXGQ-------------------------VGTKLYMSPE 246
Query: 259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET-FRNVLMKTPEFVGQRTALTD- 316
            + G+ +   VD ++LG++ +E+LY  +    + R  T  RN  +K P    Q+      
Sbjct: 247 QIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRN--LKFPLLFTQKYPQEHM 304
Query: 317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ++Q +L   P +R      A +I E+  F+ +
Sbjct: 305 MVQDMLSPSPTER----PEATDIIENAIFENL 332

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 174

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 22  ALKILGKGAMGTVF-LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
            L+ LG+G+ G+V+  +H              ++V    +  + + +   + EI ++ + 
Sbjct: 33  VLEKLGEGSYGSVYKAIHKETG----------QIVAIKQVPVESDLQEIIK-EISIMQQC 81
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
             P + K  GS   +  L   + YC  G + +++R +  ++  +   I   L   +  +E
Sbjct: 82  DSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLR--NKTLTEDEIATILQSTLKGLE 139
Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +LH M   +RD+K  NIL+   GH  L DF ++  L    A
Sbjct: 140 YLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMA 180

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG------ 290
           Q  D   + N  +GT  +++PEV++  G+    D W+LGI   EM  G  P+        
Sbjct: 174 QLTDXMAKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRA 233
Query: 291 -----KNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
                 N   TFR   + +  F       TD +++ L K P +R      A ++ +H F 
Sbjct: 234 IFMIPTNPPPTFRKPELWSDNF-------TDFVKQCLVKSPEQR----ATATQLLQHPFV 282
Query: 346 KGVR 349
           +  +
Sbjct: 283 RSAK 286

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 19  NLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +LK L+ LGKG  G+V +  +D   D T        V  K   H+  E  R    EI +L
Sbjct: 14  HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEV-----VAVKKLQHSTEEHLRDFEREIEIL 68
Query: 78  SRLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
             L H  + K  G   +     L   + Y P G L        +R+    +++ Y S+I 
Sbjct: 69  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQ-YTSQIC 127
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +E+L      +RDL   NIL+     V + DF L++ L
Sbjct: 128 KGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 23  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 71
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 72  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 128
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 129 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 170

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 25  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 73
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 74  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 130
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 131 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 172

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 116/326 (35%), Gaps = 84/326 (25%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTV+   D A             + +  L  + + E     EI V+    +P +
Sbjct: 28  IGQGASGTVYTAMDVATGQEV-------AIRQMNLQQQPKKELIIN-EILVMRENKNPNI 79
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A+E LH+ 
Sbjct: 80  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR----ECLQALEFLHSN 135
Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHR 204
            + +RD+K +NIL+   G V LTDF     +                      E  KR  
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP--------------------EQSKRSE 175
Query: 205 RILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG 264
            + T +  A PE                                V T +   P+V     
Sbjct: 176 MVGTPYWMA-PE--------------------------------VVTRKAYGPKV----- 197
Query: 265 HEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKTPEFVGQR---TALTDLIQR 320
                D W+LGI+  EM+ G  P+  +N  +  +      TPE            D + R
Sbjct: 198 -----DIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNR 252
Query: 321 LLEKDPVKRLGYLRGACEIKEHVFFK 346
            L+ D  KR      A E+ +H F K
Sbjct: 253 CLDMDVEKR----GSAKELLQHQFLK 274

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D L   K LG+GA G V        D TA     A+K++ +   H++H A      E+++
Sbjct: 27  DRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMS---ELKI 83
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRVFSPSVIRFYLS- 132
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V    + + +L+ 
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTL 143
Query: 133 --------EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ 184
                   ++   +E L +    +RDL   NIL+ +   V + DF L+R++ K   + ++
Sbjct: 144 EHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRK 203
Query: 185 S 185
Sbjct: 204 G 204

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           +L++  LK L+ +GKG  G V L   R      +C              K++A  +A   
Sbjct: 8   ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC-------------IKNDATAQAFLA 54
Query: 73  EIRVLSRLSHPFLPKLLGSL-ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFY 130
           E  V+++L H  L +LLG + E    L     Y   G L + LR +    +    +++F 
Sbjct: 55  EASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS 114
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           L ++  A+E+L      +RDL   N+L+ +     ++DF L++
Sbjct: 115 L-DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 156

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           LD +++K   ++G+G  G V  +  R      R   A+K + +   +A  +  R    E+
Sbjct: 19  LDWNDIKFQDVIGEGNFGQV--LKARIKKDGLRMDAAIKRMKE---YASKDDHRDFAGEL 73
Query: 75  RVLSRLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV------------ 121
            VL +L H P +  LLG+ E   +L  A+ Y P G  N+L + +  RV            
Sbjct: 74  EVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG--NLLDFLRKSRVLETDPAFAIANS 131
Query: 122 ----FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN--- 174
                S   +  + +++   +++L      +R+L   NIL+ ++    + DF LSR    
Sbjct: 132 TASTLSSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLSRGQEV 191
Query: 175 LVKKT 179
            VKKT
Sbjct: 192 YVKKT 196

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 21  KALKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           + L  +G GA G+V   +D     + A      PF      +S +HAK     R   E+R
Sbjct: 54  QTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPF------QSIIHAK-----RTYRELR 102
Query: 76  VLSRLSHPFLPKLLG----SLETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +L  + H  +  LL     +   +EF   + V +  G DLN +   Q     +   ++F 
Sbjct: 103 LLKHMKHENVIGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFL 159
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           + +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 160 IYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 203

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 40  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 94
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 95  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 153
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 154 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 195

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LG+G+ G V        D    C  A+K++ K  L      E   + EI++L RL H  
Sbjct: 12  LLGEGSYGKV----KEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKN 67
Query: 85  LPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           + +L+  L  E  + +   + YC  G   +L      R F       Y  ++I  +E+LH
Sbjct: 68  VIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKR-FPVCQAHGYFCQLIDGLEYLH 126
Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + GI ++D+KP N+L+   G + ++   ++  L
Sbjct: 127 SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFR 289
           V+     F   +   +  G+  +  PE+  G      F VD W+ G+  Y +  G  PF 
Sbjct: 155 VAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFE 214
Query: 290 GKNRKETFRNVLMKTPEFVGQ-RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           G N  + F N+   +    G     L+DL++ +LE +P KR   +R   +I++H +F+
Sbjct: 215 GDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFS-IR---QIRQHSWFR 268

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFYLARH 174

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++  I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART 175

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---- 303
           +V T  Y +PEV+ G G++  VD W++G++  EM+ G   F G +  + +  V+ +    
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKRLGY 332
           +PEF+ +   L   ++  +E  P K  GY
Sbjct: 245 SPEFMKK---LQPTVRTYVENRP-KYAGY 269

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 26/197 (13%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           NL   K LG+G  G V  V   A     R  +    V     +A     R    E  VL 
Sbjct: 24  NLVLGKTLGEGEFGKV--VKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQ-------------------- 117
           +++HP + KL G+   D  L   V Y   G L   LR  +                    
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 118 -NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            ++R  +   +  +  +I   +++L  M + +RDL   NIL+ +   + ++DF LSR++ 
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVY 201
Query: 177 KKTAFEKQSLNNNKFPV 193
           ++ ++ K+S    + PV
Sbjct: 202 EEDSYVKRS--QGRIPV 216

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRVLSRLS 81
           K++G G  G V+    + +      P A+K     TL A +  ++R  +  E  ++ + S
Sbjct: 50  KVIGAGEFGEVYKGMLKTSSGKKEVPVAIK-----TLKAGYTEKQRVDFLGEAGIMGQFS 104
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           H  + +L G +   + +     Y   G L+    ++ D  FS   +   L  I   +++L
Sbjct: 105 HHNIIRLEGVISKYKPMMIITEYMENGALDKF-LREKDGEFSVLQLVGMLRGIAAGMKYL 163
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            NM   +RDL   NIL+  +    ++DF LSR L
Sbjct: 164 ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL 197

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   +       A+K + +   +  H   +RA  E+ +
Sbjct: 23  LKRYQNLKPIGSGAQGIVCAAYDAILERNV----AIKKLSRPFQNQTHA--KRAYRELVL 76
Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       SLE  + +   +         V++ + +    S     + 
Sbjct: 77  MKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMS-----YL 131
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           L +++  I+HLH+ GI +RDLKP NI+++    + + DF L+R 
Sbjct: 132 LYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLART 175

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K++G G+ G V+            C     V  K  L  K    R    E++++ +L H 
Sbjct: 26  KVIGNGSFGVVYQAK--------LCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHC 73
Query: 84  FLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSEIIC 136
            + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ ++  
Sbjct: 74  NIVRLRYFFYSSGEKKDEVYLNLVLDYVPATVYRVARHYSRAKQTLPVIYVKLYMYQLFR 133
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 134 SLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 24  KILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARW--EIRVLSRL 80
           +++G G  G V     R   P  R  P A+K     TL   +  ++R  +  E  ++ + 
Sbjct: 28  RVIGAGEFGEV--CSGRLKLPGKRELPVAIK-----TLKVGYTEKQRRDFLGEASIMGQF 80
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            HP +  L G +   + +     Y   G L+    K+ND  F+   +   L  I   +++
Sbjct: 81  DHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTF-LKKNDGQFTVIQLVGMLRGISAGMKY 139
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 140 LSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 174

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA     A+K++ +   H++H A      E+++
Sbjct: 29  DRLKLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMS---ELKI 85
Query: 77  LSRLSHPF-LPKLLGSL-ETDEFLAWAVPYCPGGDLNV-LRYKQNDRV-FSPSVIR---- 128
           L  + H   +  LLG+  +    L   V +C  G+L+  LR K+N+ V + P  +     
Sbjct: 86  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLYKDFL 145
Query: 129 ------FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
                  Y  ++   +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 146 TLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXK 200

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 9   DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 59
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 60  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 116
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+ + A E
Sbjct: 117 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANE 165

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
           E +N FVGT  Y+SPE ++G  +    D W++G+   EM  G  P       E    ++ 
Sbjct: 161 EMANEFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPRPPMAIFELLDYIVN 220
Query: 303 KTPEFVGQRT---ALTDLIQRLLEKDPVKR 329
           + P  +          D + + L K+P +R
Sbjct: 221 EPPPKLPSAVFSLEFQDFVNKCLIKNPAER 250

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
             K +K+LG GA GTV+           + P A+  + ++T     +A +    E  V++
Sbjct: 50  EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREAT---SPKANKEILDEAYVMA 106
Query: 79  RLSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I  
Sbjct: 107 SVDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAK 162
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 163 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 201

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 30/181 (16%)
Query: 14  SLDLDNLKALK----------ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK 63
           SLD  +L AL+          ++G G  G V+          A    A+KV+D +     
Sbjct: 10  SLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLA----AIKVMDVTG---- 61
Query: 64  HEAERRARWEIRVLSRLSH---------PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLR 114
            + E   + EI +L + SH          F+ K    +  D+ L   + +C  G +  L 
Sbjct: 62  -DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM--DDQLWLVMEFCGAGSVTDLI 118
Query: 115 YKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
                       I +   EI+  + HLH   + +RD+K +N+L+ ++  V L DF +S  
Sbjct: 119 KNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ 178
Query: 175 L 175
           L
Sbjct: 179 L 179

>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 37/164 (22%)
Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTAFEKQS 185
           +R Y+  +  A++ +H  GI +RD+KP N L  R+     L DF L+           Q 
Sbjct: 119 VREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLA-----------QG 167
Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
            ++ K  +L   ++  +  R          +NK  +          +SRRQQ        
Sbjct: 168 THDTKIELLKFVQSEAQQERC--------SQNKCSI---------CLSRRQQVAPRA--- 207
Query: 246 NSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPF 288
               GT  + +PEV+ +      A+D W+ G++   +L G  PF
Sbjct: 208 ----GTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF 247

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 35  FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLE 93
           + V  R         FA+K++DKS        +R    EI +L R   HP +  L    +
Sbjct: 35  YSVCKRCIHKATNMEFAVKIIDKS--------KRDPTEEIEILLRYGQHPNIITLKDVYD 86
Query: 94  TDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL 151
             +++        GG+L   +LR K     FS       L  I   +E+LH  G+ +RDL
Sbjct: 87  DGKYVYVVTELMKGGELLDKILRQK----FFSEREASAVLFTITKTVEYLHAQGVVHRDL 142
Query: 152 KPENIL-IRQSGH---VTLTDFDLSRNL 175
           KP NIL + +SG+   + + DF  ++ L
Sbjct: 143 KPSNILYVDESGNPESIRICDFGFAKQL 170

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE---- 306
           T  +V+PEV+   G++ A D W+LG+L Y ML G TPF      +T   +L +       
Sbjct: 183 TANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPF-ANGPDDTPEEILARIGSGKFS 241
Query: 307 -----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
                +        DL+ ++L  DP +RL     A  +  H +   V WD L
Sbjct: 242 LSGGYWNSVSDTAKDLVSKMLHVDPHQRL----TAALVLRHPWI--VHWDQL 287

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+L  GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 17  FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 73
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 74  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 129
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 75
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 76  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 131
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF  ++ L
Sbjct: 132 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL 169

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+L  GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 24  FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 80
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 81  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 136
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 137 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 174

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 24  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 80
Query: 80  LSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG     T + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 81  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 136
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF  ++ L
Sbjct: 137 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL 174

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 32/201 (15%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL+  K+LG GA G V    +  A   ++   +++V  K        +ER A   E+++
Sbjct: 45  ENLEFGKVLGSGAFGKVM---NATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 101
Query: 77  LSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRF----- 129
           +++L SH  +  LLG+      +     YC  GDL N LR K+    FS   I +     
Sbjct: 102 MTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREK--FSEDEIEYENQKR 159
Query: 130 ----------YLSEIIC-------AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
                        +++C        +E L      +RDL   N+L+     V + DF L+
Sbjct: 160 LEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLA 219
Query: 173 RNLVKKTAFEKQSLNNNKFPV 193
           R+++  + +  +   N + PV
Sbjct: 220 RDIMSDSNYVVRG--NARLPV 238

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 17  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 73
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 74  VDNPHVCRLLGICLTSTVQLITQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 129
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF  ++ L
Sbjct: 130 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL 167

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + D+ L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDYGLARH 174

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 44/228 (19%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  +   ++G G+ G V   +D+           L+V +        + +R  R EI +L
Sbjct: 53  DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLI-----DCKRILR-EIAIL 106
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND--RVFSPSV------IRF 129
           +RL+H  + K+L  +   +   +   Y       VL    +D  ++F   V      I+ 
Sbjct: 107 NRLNHDHVVKVLDIVIPKDVEKFDELYV------VLEIADSDFKKLFRTPVYLTELHIKT 160
Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN 189
            L  ++  ++++H+ GI +RDLKP N L+ Q   V + DF L+R +      +     N+
Sbjct: 161 LLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTV------DYPENGNS 214
Query: 190 KFPV-----------LPVTENPKRHR--RILTRWLHA-----LPENKT 219
           + P+            P T+N KR     ++TRW  A     L EN T
Sbjct: 215 QLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYT 262

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 75
Query: 80  LSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG     T + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 76  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 131
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF  ++ L
Sbjct: 132 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL 169

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+L  GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 24  FKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 80
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 81  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 136
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 137 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 174

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 19  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 75
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 76  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 131
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF  ++ L
Sbjct: 132 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL 169

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K L+ LG G   TV+    +  + T     ALK V    L ++      A  EI ++  
Sbjct: 7   FKQLEKLGNGTYATVY----KGLNKTTGVYVALKEVK---LDSEEGTPSTAIREISLMKE 59
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV------FSPSVIRFYLSE 133
           L H  + +L   + T+  L     +    D ++ +Y  +  V         ++++++  +
Sbjct: 60  LKHENIVRLYDVIHTENKLTLVFEFM---DNDLKKYMDSRTVGNTPRGLELNLVKYFQWQ 116
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  +   H   I +RDLKP+N+LI + G + L DF L+R
Sbjct: 117 LLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLAR 156

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF L+R L
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLARVL 197

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 60  KVIGNGSFGVVYQA---------------KLCDSGELVAIKKVLQDKRFKNRELQIMRKL 104
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 105 DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 164
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 165 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 209

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 83
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 84  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 140
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 141 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 187

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE
Sbjct: 187 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE 237

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 68  DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 118
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 119 VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 175
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 176 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 222

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE
Sbjct: 222 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE 272

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 54  KVIGNGSFGVVYQA---------------KLCDSGELVAIKKVLQDKRFKNRELQIMRKL 98
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 99  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 158
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 159 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 203

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 60  KVIGNGSFGVVYQA---------------KLCDSGELVAIKKVLQDKRFKNRELQIMRKL 104
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 105 DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 164
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 165 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 209

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 35  FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLE 93
           + V  R         FA+K++DKS        +R    EI +L R   HP +  L    +
Sbjct: 35  YSVCKRCIHKATNXEFAVKIIDKS--------KRDPTEEIEILLRYGQHPNIITLKDVYD 86
Query: 94  TDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL 151
             +++        GG+L   +LR K     FS       L  I   +E+LH  G+ +RDL
Sbjct: 87  DGKYVYVVTELXKGGELLDKILRQK----FFSEREASAVLFTITKTVEYLHAQGVVHRDL 142
Query: 152 KPENIL-IRQSGH---VTLTDFDLSRNL 175
           KP NIL + +SG+   + + DF  ++ L
Sbjct: 143 KPSNILYVDESGNPESIRICDFGFAKQL 170

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE---- 306
           T  +V+PEV+   G++ A D W+LG+L Y  L G TPF      +T   +L +       
Sbjct: 183 TANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGYTPF-ANGPDDTPEEILARIGSGKFS 241
Query: 307 -----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
                +        DL+ + L  DP +RL     A  +  H +   V WD L
Sbjct: 242 LSGGYWNSVSDTAKDLVSKXLHVDPHQRL----TAALVLRHPWI--VHWDQL 287

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 64  KVIGNGSFGVVYQA---------------KLCDSGELVAIKKVLQDKRFKNRELQIMRKL 108
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 109 DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 168
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 169 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 213

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 62  KVIGNGSFGVVYQA---------------KLCDSGELVAIKKVLQDKRFKNRELQIMRKL 106
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 107 DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 166
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 167 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 211

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
            K +K+LG GA GTV+           + P A+K + ++T     +A +    E  V++ 
Sbjct: 21  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMAS 77
Query: 80  LSHPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           + +P + +LLG   T   + +   +P+  G  L+ +R +  D + S  ++ + + +I   
Sbjct: 78  VDNPHVCRLLGICLTSTVQLIMQLMPF--GCLLDYVR-EHKDNIGSQYLLNWCV-QIAKG 133
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + +L +  + +RDL   N+L++   HV +TDF  ++ L
Sbjct: 134 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLL 171

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 34  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 78
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 79  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 138
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 139 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 183

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 38  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 82
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 83  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 142
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 143 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 187

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 105 KVIGNGSFGVVYQA---------------KLCDSGELVAIKKVLQDKRFKNRELQIMRKL 149
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 150 DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 209
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 210 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 254

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 38  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 82
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 83  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 142
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 143 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 187

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 31  KVIGNGSFGVVYQA---------------KLCDSGELVAIKKVLQDKRFKNRELQIMRKL 75
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 76  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 135
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 136 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 180

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 45  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 89
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 90  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 149
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 150 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 194

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 27  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 71
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 72  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 131
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 132 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 176

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 25  DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 75
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 76  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 132
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 133 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 179

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF 288
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P 
Sbjct: 179 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 222

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     +      +   A+K++ + ++      E     E 
Sbjct: 6   IDPKDLTFLKELGTGQFGVV-----KYGKWRGQYDVAIKMIKEGSMSEDEFIE-----EA 55
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  LSH  L +L G       +     Y   G L N LR  ++   F    +     +
Sbjct: 56  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKD 113
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV
Sbjct: 114 VCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EYTSSRGSKFPV 170

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 39  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 83
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 84  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 143
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 144 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 188

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 30  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 74
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 75  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 134
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 135 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 179

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 26  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 70
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 71  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 130
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 131 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +     Y   G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF L R L
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVL 197

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K++G G+ G V+            C     V  K  L  K    R    E++++ +L H 
Sbjct: 26  KVIGNGSFGVVYQAK--------LCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHC 73
Query: 84  FLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSEIIC 136
            + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ ++  
Sbjct: 74  NIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFR 133
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 134 SLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 26  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 70
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 71  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 130
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 131 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K++G G+ G V+            C     V  K  L  K    R    E++++ +L H 
Sbjct: 26  KVIGNGSFGVVYQAK--------LCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHC 73
Query: 84  FLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSEIIC 136
            + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ ++  
Sbjct: 74  NIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFR 133
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 134 SLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/299 (18%), Positives = 111/299 (37%), Gaps = 89/299 (29%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTA---RCPFALKVVDKSTLHAKHEAERRARWEI 74
           D  + ++ +G GA G V     R         + P A  VV  +         +R   E+
Sbjct: 54  DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNA---------KRTLREL 104
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVL---------RYKQNDRVFSPS 125
           ++L    H  +      +   + L   VPY     + V+         +   + +  +  
Sbjct: 105 KILKHFKHDNI------IAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQPLTLE 158
Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
            +R++L +++  ++++H+  + +RDLKP N+L+ ++  + + DF ++R L          
Sbjct: 159 HVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCT-------- 210
Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
                        +P  H+  +T                                     
Sbjct: 211 -------------SPAEHQYFMT------------------------------------- 220
Query: 246 NSFVGTEEYVSPEVVRGDGHEF--AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
             +V T  Y +PE++    HE+  A+D W++G +  EML     F GKN     + ++M
Sbjct: 221 -EYVATRWYRAPELMLS-LHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMM 277

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 26  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 70
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  + + +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 71  DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 130
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 131 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     +      +   A+K++ + ++      E     E 
Sbjct: 21  IDPKDLTFLKELGTGQFGVV-----KYGKWRGQYDVAIKMIKEGSMSEDEFIE-----EA 70
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  LSH  L +L G       +     Y   G L N LR  ++   F    +     +
Sbjct: 71  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKD 128
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L +    +RDL   N L+   G V ++DF LSR ++     E+ S   +KFPV
Sbjct: 129 VCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EETSSVGSKFPV 185

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 56
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 113
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 114 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE
Sbjct: 160 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE 210

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 26/197 (13%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           NL   K LG+G  G V  V   A     R  +    V     +A     R    E  VL 
Sbjct: 24  NLVLGKTLGEGEFGKV--VKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQ-------------------- 117
           +++HP + KL G+   D  L   V Y   G L   LR  +                    
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 118 -NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            ++R  +   +  +  +I   +++L  M + +RDL   NIL+ +   + ++DF LSR++ 
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMSLVHRDLAARNILVAEGRKMKISDFGLSRDVY 201
Query: 177 KKTAFEKQSLNNNKFPV 193
           ++ +  K+S    + PV
Sbjct: 202 EEDSXVKRS--QGRIPV 216

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD 109
           ++L V  K+      E E   + E  V+  + HP L +LLG    +        Y P G+
Sbjct: 56  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGN 114
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           L     + N    +  V+ +  ++I  A+E+L      +RDL   N L+ ++  V + DF
Sbjct: 115 LLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADF 174
Query: 170 DLSRNLVKKTAFEKQSLNNNKFPV 193
            LSR +   T     +    KFP+
Sbjct: 175 GLSRLMTGDT---YTAHAGAKFPI 195

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 62/178 (34%)
Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
           +R++L +++  ++++H+  + +RDLKP N+L+ ++  + + DF ++R L           
Sbjct: 161 VRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCT--------- 211
Query: 187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN 246
                       +P  H+  +T                                      
Sbjct: 212 ------------SPAEHQYFMTE------------------------------------- 222
Query: 247 SFVGTEEYVSPEVVRGDGHEF--AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
            +V T  Y +PE++    HE+  A+D W++G +  EML     F GKN     + ++M
Sbjct: 223 -YVATRWYRAPELMLS-LHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMM 278

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 56
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 113
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 114 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE
Sbjct: 160 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE 210

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 56
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 113
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 114 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE
Sbjct: 160 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE 210

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 56
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 113
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 114 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE
Sbjct: 160 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE 210

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G VF V  +        P  L V+ +  +H + +   R +   E++
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHK--------PSGL-VMARKLIHLEIKPAIRNQIIRELQ 56
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGRI--PEQILGKVSIAV 113
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 114 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE  R
Sbjct: 160 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEDSR 213

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 23  LSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 71
Query: 78  SRLSHPFLPKLLGSLETDEFL-----AWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFYL 131
             + H  +  LL        L      + V +  G DLN +++  +     +   ++F +
Sbjct: 72  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCAK----LTDDHVQFLI 127
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
            +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+
Sbjct: 128 YQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH 170

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G G+ GTV       +D       A+K++ +   HA+   E     E+ ++ RL HP +
Sbjct: 45  IGAGSFGTVHRAEWHGSD------VAVKILMEQDFHAERVNEFLR--EVAIMKRLRHPNI 96
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EIICAIEHLHNM 144
              +G++     L+    Y   G L  L +K   R       R  ++ ++   + +LHN 
Sbjct: 97  VLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 145 G--IAYRDLKPENILIRQSGHVTLTDFDLSR 173
              I +RDLK  N+L+ +   V + DF LSR
Sbjct: 157 NPPIVHRDLKSPNLLVDKKYTVKVCDFGLSR 187

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 22/161 (13%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
           L+ +G GA G V      A D       A+K + +   S L AK     RA  E+R+L  
Sbjct: 30  LQPVGSGAYGAVC----SAVDGRTGAKVAIKKLYRPFQSELFAK-----RAYRELRLLKH 80
Query: 80  LSHPFLPKLLGSLETDEFL------AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           + H  +  LL     DE L         +P+  G DL  L   +         I+F + +
Sbjct: 81  MRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHEK---LGEDRIQFLVYQ 136
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           ++  + ++H  GI +RDLKP N+ + +   + + DF L+R 
Sbjct: 137 MLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     +      +   A+K++ + ++      E     E 
Sbjct: 12  IDPKDLTFLKELGTGQFGVV-----KYGKWRGQYDVAIKMIKEGSMSEDEFIE-----EA 61
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  LSH  L +L G       +     Y   G L N LR  ++   F    +     +
Sbjct: 62  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKD 119
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV
Sbjct: 120 VCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EYTSSVGSKFPV 176

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 26/197 (13%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           NL   K LG+G  G V  V   A     R  +    V     +A     R    E  VL 
Sbjct: 24  NLVLGKTLGEGEFGKV--VKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQ-------------------- 117
           +++HP + KL G+   D  L   V Y   G L   LR  +                    
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 118 -NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            ++R  +   +  +  +I   +++L  M + +RDL   NIL+ +   + ++DF LSR++ 
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVY 201
Query: 177 KKTAFEKQSLNNNKFPV 193
           ++ +  K+S    + PV
Sbjct: 202 EEDSXVKRS--QGRIPV 216

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     +      +   A+K++ + ++      E     E 
Sbjct: 5   IDPKDLTFLKELGTGQFGVV-----KYGKWRGQYDVAIKMIKEGSMSEDEFIE-----EA 54
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  LSH  L +L G       +     Y   G L N LR  ++   F    +     +
Sbjct: 55  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKD 112
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV
Sbjct: 113 VCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EYTSSVGSKFPV 169

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     +      +   A+K++ + ++      E     E 
Sbjct: 6   IDPKDLTFLKELGTGQFGVV-----KYGKWRGQYDVAIKMIKEGSMSEDEFIE-----EA 55
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  LSH  L +L G       +     Y   G L N LR  ++   F    +     +
Sbjct: 56  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKD 113
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV
Sbjct: 114 VCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EYTSSVGSKFPV 170

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ + ++ LG+G    VF     A + T      +K++       K   + + + EI++L
Sbjct: 37  DDYQLVRKLGRGKYSEVF----EAINITNNEKVVVKIL-------KPVKKNKIKREIKIL 85
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
             L     P ++   +  +      P      +N   +KQ  +  +   IRFY+ EI+ A
Sbjct: 86  ENLRGG--PNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKA 143
Query: 138 IEHLHNMGIAYRDLKPENILI 158
           +++ H+MGI +RD+KP N++I
Sbjct: 144 LDYCHSMGIMHRDVKPHNVMI 164

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 47/169 (27%)
Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
           +R    ++  A++ LH+  + + DLKPENIL   S      D++L+ NL           
Sbjct: 139 VRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNS------DYELTYNL----------- 181
Query: 187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN 246
                                        E K   +  KS  V  V     +FD+ E  +
Sbjct: 182 -----------------------------EKKRDERSVKSTAVRVVDFGSATFDH-EHHS 211
Query: 247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           + V T  Y +PEV+   G     D W++G + +E   G T F+  + +E
Sbjct: 212 TIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQTHDNRE 260

>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase Ck2alpha With Altered Cosubstrate Specificity Length = 335

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N+LI
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVLI 164

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     +      +   A+K++ + ++      E     E 
Sbjct: 21  IDPKDLTFLKELGTGQFGVV-----KYGKWRGQYDVAIKMIKEGSMSEDEFIE-----EA 70
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  LSH  L +L G       +     Y   G L N LR  ++   F    +     +
Sbjct: 71  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKD 128
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV
Sbjct: 129 VCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EYTSSVGSKFPV 185

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + +  F L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILGFGLARH 174

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     +      +   A+K++ + ++      E     E 
Sbjct: 1   IDPKDLTFLKELGTGQFGVV-----KYGKWRGQYDVAIKMIKEGSMSEDEFIE-----EA 50
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  LSH  L +L G       +     Y   G L N LR  ++   F    +     +
Sbjct: 51  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKD 108
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +  A+E+L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV
Sbjct: 109 VCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EYTSSVGSKFPV 165

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 26  LGKGAMGTVFLVHDRAADPTA-RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           LG+GA G VFL       PT  +   A+K +   TL A+ + +R A     +L+ L H  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAE----LLTNLQHEH 78
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRV-------------FSPSVIRFY 130
           + K  G     + L     Y   GDLN  LR    D +                S +   
Sbjct: 79  IVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHI 138
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            S+I   + +L +    +RDL   N L+  +  V + DF +SR++
Sbjct: 139 ASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDV 183

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG+G   TV+    +  D       ALK +    L  +  A   A  E+ +L  L H  +
Sbjct: 10  LGEGTYATVYKGKSKLTDNLV----ALKEI---RLEHEEGAPCTAIREVSLLKDLKHANI 62
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNM 144
             L   + T++ L     Y    D ++ +Y  +   + +   ++ +L +++  + + H  
Sbjct: 63  VTLHDIIHTEKSLTLVFEYL---DKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ 119
Query: 145 GIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            + +RDLKP+N+LI + G + L DF L+R
Sbjct: 120 KVLHRDLKPQNLLINERGELKLADFGLAR 148

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 41/180 (22%)
Query: 116 KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + N   F    I+ Y  EI+ A+ +L  M + + DLKPENIL+                 
Sbjct: 128 RNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDP-------------- 173
Query: 176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR 235
                FEK  +      V  VT+                   K  + +TKS  +  +   
Sbjct: 174 ----YFEKSLIT-----VRRVTDG-----------------KKIQIYRTKSTGIKLIDFG 207
Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
             +F   +   S + T +Y +PEV+   G + + D W+ G +  E+  G+  FR     E
Sbjct: 208 CATF-KSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHME 266

>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme Length = 335

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLRQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWEIRVLSR 79
           + LK++GKG+ G V     +A D       ALK+V ++   H      R+A  EIR+L  
Sbjct: 100 EVLKVIGKGSFGQVV----KAYDHKVHQHVALKMVRNEKRFH------RQAAEEIRILEH 149
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCP-----GGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           L        +  +   E   +    C        +L  L  K   + FS  ++R +   I
Sbjct: 150 LRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSI 209
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGH--VTLTDFDLS 172
           +  ++ LH   I + DLKPENIL++Q G   + + DF  S
Sbjct: 210 LQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + D  L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDAGLARH 174

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWEIRVLSR 79
           + LK++GKG+ G V     +A D       ALK+V ++   H      R+A  EIR+L  
Sbjct: 100 EVLKVIGKGSFGQVV----KAYDHKVHQHVALKMVRNEKRFH------RQAAEEIRILEH 149
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCP-----GGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           L        +  +   E   +    C        +L  L  K   + FS  ++R +   I
Sbjct: 150 LRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSI 209
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGH--VTLTDFDLS 172
           +  ++ LH   I + DLKPENIL++Q G   + + DF  S
Sbjct: 210 LQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTV+   D A             + +  L  + + E     EI V+    +P +
Sbjct: 28  IGQGASGTVYTAMDVATGQEV-------AIRQMNLQQQPKKELIIN-EILVMRENKNPNI 79
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A+E LH+ 
Sbjct: 80  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR----ECLQALEFLHSN 135
Query: 145 GIAYRDLKPENILIRQSGHVTLTDF 169
            + +RD+K +NIL+   G V LTDF
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDF 160

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM 302
           + +  VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N  +  +     
Sbjct: 172 KRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 231
Query: 303 KTPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R LE D  KR      A E+ +H F K
Sbjct: 232 GTPELQNPEKLSAIFRDFLNRCLEMDVEKR----GSAKELLQHQFLK 274

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM 302
           + ++ VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N  +  +     
Sbjct: 173 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 232
Query: 303 KTPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R LE D  KR      A E+ +H F K
Sbjct: 233 GTPELQNPEKLSAIFRDFLNRCLEMDVEKR----GSAKELIQHQFLK 275

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +         G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 156 IASGMKYLSDMGAVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTV+   D A             + +  L  + + E     EI V+    +P +
Sbjct: 28  IGQGASGTVYTAMDVATGQEV-------AIRQMNLQQQPKKELIIN-EILVMRENKNPNI 79
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A+E LH+ 
Sbjct: 80  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR----ECLQALEFLHSN 135
Query: 145 GIAYRDLKPENILIRQSGHVTLTDF 169
            + +RD+K +NIL+   G V LTDF
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDF 160

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM 302
           + ++ VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N  +  +     
Sbjct: 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 231
Query: 303 KTPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R L+ D  KR      A E+ +H F K
Sbjct: 232 GTPELQNPEKLSAIFRDFLNRCLDMDVEKR----GSAKELLQHQFLK 274

>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With The Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With Ellagic Acid Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 121 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 169

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 13  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 67
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +         G L+    +++D  F+   +   L  
Sbjct: 68  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSF-LRKHDAQFTVIQLVGMLRG 126
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 127 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 168

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 124/333 (37%), Gaps = 96/333 (28%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSRL-S 81
           K LG GA G V    +  A    +   A+ V  K    + H  ER A   E++VLS L +
Sbjct: 45  KTLGAGAFGKVV---EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 101
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFS---PSVIRF-------- 129
           H  +  LLG+            YC  GDL N LR K++  + S   P+++          
Sbjct: 102 HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE 161
Query: 130 ----YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
               +  ++   +  L +    +RDL   NIL+       + DF L+R++          
Sbjct: 162 DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIK--------- 212
Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
            N++ + V       K + R+  +W+                                  
Sbjct: 213 -NDSNYVV-------KGNARLPVKWM---------------------------------- 230
Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRG--------KNRKET 296
                     +PE +    + F  D W+ GI  +E+   G++P+ G        K  KE 
Sbjct: 231 ----------APESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 280
Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           FR   M +PE       + D+++   + DP+KR
Sbjct: 281 FR---MLSPEHAPAE--MYDIMKTCWDADPLKR 308

>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945 Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human Protein Kinase Ck2 Catalytic Subunit Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 115 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 163

>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And Human Ck2alpha' In Complex With A Non-hydrolysable Atp-analogue Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D- Ribofuranosylbenzimidazole Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 124/333 (37%), Gaps = 96/333 (28%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSRL-S 81
           K LG GA G V    +  A    +   A+ V  K    + H  ER A   E++VLS L +
Sbjct: 29  KTLGAGAFGKVV---EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 85
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFS---PSVIRF-------- 129
           H  +  LLG+            YC  GDL N LR K++  + S   P+++          
Sbjct: 86  HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE 145
Query: 130 ----YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
               +  ++   +  L +    +RDL   NIL+       + DF L+R++          
Sbjct: 146 DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIK--------- 196
Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
            N++ + V       K + R+  +W+                                  
Sbjct: 197 -NDSNYVV-------KGNARLPVKWM---------------------------------- 214
Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRG--------KNRKET 296
                     +PE +    + F  D W+ GI  +E+   G++P+ G        K  KE 
Sbjct: 215 ----------APESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 264
Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           FR   M +PE       + D+++   + DP+KR
Sbjct: 265 FR---MLSPEHAPAE--MYDIMKTCWDADPLKR 292

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           +D+  +K  +++G G  G V   H +   P  R  F    V   TL + +  ++R  +  
Sbjct: 30  IDISCVKIEQVIGAGEFGEVCSGHLKL--PGKREIF----VAIKTLKSGYTEKQRRDFLS 83
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  ++ +  HP +  L G +     +     +   G L+    +QND  F+   +   L 
Sbjct: 84  EASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSF-LRQNDGQFTVIQLVGMLR 142
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            I   +++L +M   +RDL   NIL+  +    ++DF LSR L   T+
Sbjct: 143 GIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 190

>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With Emodin At Ph 8.5 Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G+GA GTV+   D A             + +  L  + + E     EI V+    +P +
Sbjct: 29  IGQGASGTVYTAMDVATGQEV-------AIRQMNLQQQPKKELIIN-EILVMRENKNPNI 80
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM 144
              L S    + L   + Y  GG L +V+     D     +V R    E + A+E LH+ 
Sbjct: 81  VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR----ECLQALEFLHSN 136
Query: 145 GIAYRDLKPENILIRQSGHVTLTDF 169
            + +RD+K +NIL+   G V LTDF
Sbjct: 137 QVIHRDIKSDNILLGMDGSVKLTDF 161

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM 302
           + +  VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N  +  +     
Sbjct: 173 KRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 232
Query: 303 KTPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R LE D  KR      A E+ +H F K
Sbjct: 233 GTPELQNPEKLSAIFRDFLNRCLEMDVEKR----GSAKELIQHQFLK 275

>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 115 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 163

>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane Derivative Inhibitor (Cpa) Length = 331

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 116 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW---EIRVLSRL 80
           K++G G+ G V+                 K+ D   L A  +  +  R+   E++++ +L
Sbjct: 26  KVIGNGSFGVVY---------------QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL 70
Query: 81  SHPFLPKL------LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV-IRFYLSE 133
            H  + +L       G  +   +L   + Y P     V R+    +   P + ++ Y+ +
Sbjct: 71  DHCNIVRLRYFFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 130
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHV-TLTDFDLSRNLVK 177
           +  ++ ++H+ GI +RD+KP+N+L+     V  L DF  ++ LV+
Sbjct: 131 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 175

>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph 8.5 Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI 158
           +N   +KQ  +  +   IRFY+ EI+ A+++ H+MGI +RD+KP N++I
Sbjct: 114 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 162

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD  N+   K++G G  G V     R   P+ +    + V  K+      E +RR    E
Sbjct: 42  LDATNISIDKVVGAGEFGEV--CSGRLKLPSKK---EISVAIKTLKVGYTEKQRRDFLGE 96
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP + +L G +   + +         G L+    +++D  F+   +   L  
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSF-LRKHDAQFTVIQLVGMLRG 155
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           I   +++L +MG  +RDL   NILI  +    ++DF LSR L
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + D  L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDGGLARH 174

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 124/333 (37%), Gaps = 96/333 (28%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSRL-S 81
           K LG GA G V    +  A    +   A+ V  K    + H  ER A   E++VLS L +
Sbjct: 47  KTLGAGAFGKVV---EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 103
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFS---PSVIRF-------- 129
           H  +  LLG+            YC  GDL N LR K++  + S   P+++          
Sbjct: 104 HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE 163
Query: 130 ----YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
               +  ++   +  L +    +RDL   NIL+       + DF L+R++          
Sbjct: 164 DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIK--------- 214
Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
            N++ + V       K + R+  +W+                                  
Sbjct: 215 -NDSNYVV-------KGNARLPVKWM---------------------------------- 232
Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRG--------KNRKET 296
                     +PE +    + F  D W+ GI  +E+   G++P+ G        K  KE 
Sbjct: 233 ----------APESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 282
Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           FR   M +PE       + D+++   + DP+KR
Sbjct: 283 FR---MLSPEHAPAE--MYDIMKTCWDADPLKR 310

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 124/333 (37%), Gaps = 96/333 (28%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSRL-S 81
           K LG GA G V    +  A    +   A+ V  K    + H  ER A   E++VLS L +
Sbjct: 52  KTLGAGAFGKVV---EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 108
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFS---PSVIRF-------- 129
           H  +  LLG+            YC  GDL N LR K++  + S   P+++          
Sbjct: 109 HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE 168
Query: 130 ----YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
               +  ++   +  L +    +RDL   NIL+       + DF L+R++          
Sbjct: 169 DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIK--------- 219
Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
            N++ + V       K + R+  +W+                                  
Sbjct: 220 -NDSNYVV-------KGNARLPVKWM---------------------------------- 237
Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRG--------KNRKET 296
                     +PE +    + F  D W+ GI  +E+   G++P+ G        K  KE 
Sbjct: 238 ----------APESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 287
Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           FR   M +PE       + D+++   + DP+KR
Sbjct: 288 FR---MLSPEHAPAE--MYDIMKTCWDADPLKR 315

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G +        + +
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVRE 234
Query: 304 TP-----EFVGQRTALTDLIQRLLEKDPVKR 329
            P        G    L  ++ + L K+P  R
Sbjct: 235 DPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 23  LKILGKGAMGTVFLVHD-----RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           L  +G GA G+V    D     R A      PF      +S +HAK     R   E+R+L
Sbjct: 27  LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAK-----RTYRELRLL 75
Query: 78  SRLSHPFLPKLLGSL----ETDEFL-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL         +EF   + V +  G DLN +   Q     +   ++F + 
Sbjct: 76  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +I+  ++++H+  I +RDLKP N+ + +   + + D  L+R+
Sbjct: 133 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDRGLARH 174

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
           ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G +
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
           ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G +
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
           ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G +
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
           ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G +
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 26/171 (15%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWE 73
           ++   + L  +G+G  G VF    R            KV  K  L  + K      A  E
Sbjct: 16  EVSKYEKLAKIGQGTFGEVFKARHRKT--------GQKVALKKVLMENEKEGFPITALRE 67
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPY--CPGGDLNVLRYKQNDR--VFSPSVIRF 129
           I++L  L H  +  L+    T      A PY  C G    V  + ++D   + S  +++F
Sbjct: 68  IKILQLLKHENVVNLIEICRTK-----ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKF 122
Query: 130 YLSEI-------ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            LSEI       +  + ++H   I +RD+K  N+LI + G + L DF L+R
Sbjct: 123 TLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR 173

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           +G G+ GTV       +D       A+K++ +   HA+   E     E+ ++ RL HP +
Sbjct: 45  IGAGSFGTVHRAEWHGSD------VAVKILMEQDFHAERVNEFLR--EVAIMKRLRHPNI 96
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EIICAIEHLHNM 144
              +G++     L+    Y   G L  L +K   R       R  ++ ++   + +LHN 
Sbjct: 97  VLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 145 G--IAYRDLKPENILIRQSGHVTLTDFDLSR 173
              I +R+LK  N+L+ +   V + DF LSR
Sbjct: 157 NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 124/333 (37%), Gaps = 96/333 (28%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRVLSRL-S 81
           K LG GA G V    +  A    +   A+ V  K    + H  ER A   E++VLS L +
Sbjct: 52  KTLGAGAFGKVV---EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 108
Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFS---PSVIRF-------- 129
           H  +  LLG+            YC  GDL N LR K++  + S   P+++          
Sbjct: 109 HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE 168
Query: 130 ----YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
               +  ++   +  L +    +RDL   NIL+       + DF L+R++          
Sbjct: 169 DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARHIK--------- 219
Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
            N++ + V       K + R+  +W+                                  
Sbjct: 220 -NDSNYVV-------KGNARLPVKWM---------------------------------- 237
Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRG--------KNRKET 296
                     +PE +    + F  D W+ GI  +E+   G++P+ G        K  KE 
Sbjct: 238 ----------APESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 287
Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           FR   M +PE       + D+++   + DP+KR
Sbjct: 288 FR---MLSPEHAPAE--MYDIMKTCWDADPLKR 315

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA-ERRARWEIR 75
           ++    L+ +G+G  G V+   +   +      FALK   K  L  + E        EI 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET-----FALK---KIRLEKEDEGIPSTTIREIS 52
Query: 76  VLSRLSHPFLPKLLGSLET-----------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSP 124
           +L  L H  + KL   + T           D+ L   +  C GG                
Sbjct: 53  ILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LES 99
Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              + +L +++  I + H+  + +RDLKP+N+LI + G + + DF L+R
Sbjct: 100 VTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWEIRVLSR 79
           + LK++GKG  G V     +A D       ALK+V ++   H      R+A  EIR+L  
Sbjct: 100 EVLKVIGKGXFGQVV----KAYDHKVHQHVALKMVRNEKRFH------RQAAEEIRILEH 149
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCP-----GGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           L        +  +   E   +    C        +L  L  K   + FS  ++R +   I
Sbjct: 150 LRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSI 209
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGH--VTLTDFDLS 172
           +  ++ LH   I + DLKPENIL++Q G   + + DF  S
Sbjct: 210 LQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 73  EIRVLSRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVF--SPSVI 127
           E+ +L  L HP + +    +   T+  L   + YC GGDL +V+     +R +     V+
Sbjct: 55  EVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVL 114
Query: 128 RFYLSEIICAIEHLHNMG-----IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           R  ++++  A++  H        + +RDLKP N+ +    +V L DF L+R L   T+F 
Sbjct: 115 RV-MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA 173
Query: 183 K 183
           K
Sbjct: 174 K 174

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA-ERRARWEIR 75
           ++    L+ +G+G  G V+   +   +      FALK   K  L  + E        EI 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET-----FALK---KIRLEKEDEGIPSTTIREIS 52
Query: 76  VLSRLSHPFLPKLLGSLET-----------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSP 124
           +L  L H  + KL   + T           D+ L   +  C GG                
Sbjct: 53  ILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LES 99
Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              + +L +++  I + H+  + +RDLKP+N+LI + G + + DF L+R
Sbjct: 100 VTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 48  LQYIGEGAYGMV----SSAYDHVRKTRVAIKKI--SPFEHQTYCQRTLR-EIQILLRFRH 100
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   L      A    Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 101 ENVIGIRDILRASTLEAMRDVYIVQDLMETDLYKLLKSQQLSNDHICYFLYQILRGLKYI 160
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+LI  +  + + DF L+R
Sbjct: 161 HSANVLHRDLKPSNLLINTTCDLKICDFGLAR 192

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 73  EIRVLSRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVF--SPSVI 127
           E+ +L  L HP + +    +   T+  L   + YC GGDL +V+     +R +     V+
Sbjct: 55  EVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVL 114
Query: 128 RFYLSEIICAIEHLHNMG-----IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           R  ++++  A++  H        + +RDLKP N+ +    +V L DF L+R L   T+F 
Sbjct: 115 RV-MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA 173
Query: 183 K 183
           K
Sbjct: 174 K 174

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
           ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G +
Sbjct: 192 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 240

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD 109
           ++L V  K+      E E   + E  V+  + HP L +LLG    +      + +   G+
Sbjct: 35  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGN 93
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           L     + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++  V + DF
Sbjct: 94  LLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADF 153
Query: 170 DLSRNLVKKTAFEKQSLNNNKFPV 193
            LSR +   T     +    KFP+
Sbjct: 154 GLSRLMTGDTX---TAHAGAKFPI 174

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA-ERRARWEIR 75
           ++    L+ +G+G  G V+   +   +      FALK   K  L  + E        EI 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET-----FALK---KIRLEKEDEGIPSTTIREIS 52
Query: 76  VLSRLSHPFLPKLLGSLET-----------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSP 124
           +L  L H  + KL   + T           D+ L   +  C GG                
Sbjct: 53  ILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LES 99
Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              + +L +++  I + H+  + +RDLKP+N+LI + G + + DF L+R
Sbjct: 100 VTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein Kinase Ck2alpha Prime With A Potent Indazole-Derivative Inhibitor Length = 339

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTD 168
           +N   +KQ  ++ +   IRFY+ E++ A+++ H+ GI +RD+KP N++I  Q   + L D
Sbjct: 122 INNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRLID 181
Query: 169 FDLS 172
           + L+
Sbjct: 182 WGLA 185

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIR 75
            L+ LK+LG G  GTV   H     P   + + P  +KV++  +     +A       + 
Sbjct: 14  ELRKLKVLGSGVFGTV---HKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD---HML 67
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
            +  L H  + +LLG L     L     Y P G L +   +Q+     P ++  +  +I 
Sbjct: 68  AIGSLDHAHIVRLLG-LCPGSSLQLVTQYLPLGSL-LDHVRQHRGALGPQLLLNWGVQIA 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
             + +L   G+ +R+L   N+L++    V + DF ++
Sbjct: 126 KGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVA 162

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 11/156 (7%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L+ LK+LG G  GTV   H     P   + + P  +KV++  +     +A       +  
Sbjct: 33  LRKLKVLGSGVFGTV---HKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD---HMLA 86
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           +  L H  + +LLG L     L     Y P G L +   +Q+     P ++  +  +I  
Sbjct: 87  IGSLDHAHIVRLLG-LCPGSSLQLVTQYLPLGSL-LDHVRQHRGALGPQLLLNWGVQIAK 144
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            + +L   G+ +R+L   N+L++    V + DF ++
Sbjct: 145 GMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVA 180

>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo Sapiens Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTD 168
           +N   +KQ  ++ +   IRFY+ E++ A+++ H+ GI +RD+KP N++I  Q   + L D
Sbjct: 117 INNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRLID 176
Query: 169 FDLS 172
           + L+
Sbjct: 177 WGLA 180

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRL 80
           L  +G+G  G VF    R            KV  K  L  + K      A  EI++L  L
Sbjct: 23  LAKIGQGTFGEVFKARHRKT--------GQKVALKKVLMENEKEGFPITALREIKILQLL 74
Query: 81  SHPFLPKLLGSLETDEFLAWAVPY--CPGGDLNVLRYKQNDR--VFSPSVIRFYLSEI-- 134
            H  +  L+    T      A PY  C G    V  + ++D   + S  +++F LSEI  
Sbjct: 75  KHENVVNLIEICRTK-----ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKR 129
Query: 135 -----ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
                +  + ++H   I +RD+K  N+LI + G + L DF L+R
Sbjct: 130 VMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR 173

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 119 DRVFSPSV----IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           D+V  P V    I+  + +++  ++ LH+  + +RDLKP+NIL+  SG + L DF L+R
Sbjct: 110 DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRL 80
           L  +G+G  G VF    R            KV  K  L  + K      A  EI++L  L
Sbjct: 22  LAKIGQGTFGEVFKARHRKT--------GQKVALKKVLMENEKEGFPITALREIKILQLL 73
Query: 81  SHPFLPKLLGSLETDEFLAWAVPY--CPGGDLNVLRYKQNDR--VFSPSVIRFYLSEI-- 134
            H  +  L+    T      A PY  C G    V  + ++D   + S  +++F LSEI  
Sbjct: 74  KHENVVNLIEICRTK-----ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKR 128
Query: 135 -----ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
                +  + ++H   I +RD+K  N+LI + G + L DF L+R
Sbjct: 129 VMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR 172

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 119 DRVFSPSV----IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           D+V  P V    I+  + +++  ++ LH+  + +RDLKP+NIL+  SG + L DF L+R
Sbjct: 110 DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 119 DRVFSPSV----IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           D+V  P V    I+  + +++  ++ LH+  + +RDLKP+NIL+  SG + L DF L+R
Sbjct: 110 DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 48  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 100
Query: 83  PFLPKLLGSLE--TDEFL--AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
             +  +   +   T E +   + V +  G DL  L   Q+    S   I ++L +I+  +
Sbjct: 101 ENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQH---LSNDHICYFLYQILRGL 157
Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +++H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 158 KYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLAR 192

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD 109
           ++L V  K+      E E   + E  V+  + HP L +LLG    +      + +   G+
Sbjct: 37  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGN 95
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           L     + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++  V + DF
Sbjct: 96  LLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADF 155
Query: 170 DLSRNLVKKTAFEKQSLNNNKFPV 193
            LSR +   T     +    KFP+
Sbjct: 156 GLSRLMTGDTY---TAHAGAKFPI 176

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 15  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 70
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 71  GFSGVIRLLDWFERPDSFVLILERMEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 128
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 129 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 170

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT 312
           EY +PEV + D    A D W+LG L Y +L G  PF  +  ++   N++    E+     
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIM--NAEYTFDEE 225
Query: 313 AL-------TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLR 358
           A         D + RLL K+   R+     A E  +H + K     + T V+R
Sbjct: 226 AFKEISIEAMDFVDRLLVKERKSRM----TASEALQHPWLKQKIERVSTKVIR 274

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD 109
           ++L V  K+      E E   + E  V+  + HP L +LLG    +      + +   G+
Sbjct: 37  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGN 95
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           L     + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++  V + DF
Sbjct: 96  LLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADF 155
Query: 170 DLSRNLVKKTAFEKQSLNNNKFPV 193
            LSR +   T     +    KFP+
Sbjct: 156 GLSRLMTGDTY---TAHAGAKFPI 176

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 35  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 91
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 92  ----GNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 146
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 147 LVKVADFGLSRLMTGDTX---TAHAGAKFPI 174

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 134 IICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I+ A+EHLH+ + + +RD+KP N+LI   G V + DF +S  LV   A
Sbjct: 162 IVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVA 209

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           D+ + +  LG G  G V  V  R        P  L ++ +  +H + +   R +   E++
Sbjct: 16  DDFERISELGAGNGGVVTKVQHR--------PSGL-IMARKLIHLEIKPAIRNQIIRELQ 66
Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS-EI 134
           VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R+  P  I   +S  +
Sbjct: 67  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKEAKRI--PEEILGKVSIAV 123
Query: 135 ICAIEHL-HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +  + +L     I +RD+KP NIL+   G + L DF +S  L+   A
Sbjct: 124 LRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 170

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL+  K LG GA G V    +  A    +    LKV  K      H  E+ A   E+++
Sbjct: 46  NNLQFGKTLGAGAFGKVV---EATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102
Query: 77  LSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYK-------QNDRVFSPSVI 127
           +S L  H  +  LLG+      +     YC  GDL N LR K       ++ R      +
Sbjct: 103 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDL 162
Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLSRNLVKKTAFEKQSL 186
             + S++   +  L +    +RD+   N+L+  +GHV  + DF L+R+++  + +  +  
Sbjct: 163 LHFSSQVAQGMAFLASKNCIHRDVAARNVLLT-NGHVAKIGDFGLARDIMNDSNYIVKG- 220
Query: 187 NNNKFPV 193
            N + PV
Sbjct: 221 -NARLPV 226

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           LD   +K  +++G G  G V     R   P  R    + V  K+      E +RR    E
Sbjct: 40  LDASCIKIERVIGAGEFGEV--CSGRLKLPGKR---DVAVAIKTLKVGYTEKQRRDFLCE 94
Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
             ++ +  HP +  L G +   + +   + +   G L+    +++D  F+   +   L  
Sbjct: 95  ASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAF-LRKHDGQFTVIQLVGMLRG 153
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           I   + +L +MG  +RDL   NIL+  +    ++DF LSR +++       +    K PV
Sbjct: 154 IAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSR-VIEDDPEAVYTTTGGKIPV 212

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 37  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 93
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 94  ----GNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 148
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 149 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 176

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 16  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 71
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 72  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 129
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 130 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 171

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 37  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 93
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 94  ----GNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 148
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 149 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 176

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 215 PENKTGLKKTKSA--RVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K K A  +++     +++  N  ++  +  T  YV+PEV+  + ++ + D W
Sbjct: 156 PENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCY--TPYYVAPEVLGPEKYDKSCDMW 213
Query: 273 ALGILTYEMLYGTTPFR---------GKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLE 323
           +LG++ Y +L G  PF          G  R+          PE+         LI+ LL+
Sbjct: 214 SLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLK 273
Query: 324 KDPVKRL 330
            DP +RL
Sbjct: 274 TDPTERL 280

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 15  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 70
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 71  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 128
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 129 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 170

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 215 PENKTGLKKTKSA--RVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWW 272
           PEN     K K A  +++     +++  N  ++  +  T  YV+PEV+  + ++ + D W
Sbjct: 137 PENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCY--TPYYVAPEVLGPEKYDKSCDMW 194
Query: 273 ALGILTYEMLYGTTPFR---------GKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLE 323
           +LG++ Y +L G  PF          G  R+          PE+         LI+ LL+
Sbjct: 195 SLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLK 254
Query: 324 KDPVKRL 330
            DP +RL
Sbjct: 255 TDPTERL 261

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 100/294 (34%), Gaps = 75/294 (25%)
Query: 15  LDLDNLKALKILGKGAMGTV---FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           +D   L   +I+G G  G V   F + D  A   AR                 +     R
Sbjct: 4   IDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAAR---------HDPDEDISQTIENVR 54
Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E ++ + L HP +  L G    +  L   + +  GG LN  R     R+  P ++  + 
Sbjct: 55  QEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLN--RVLSGKRI-PPDILVNWA 111
Query: 132 SEIICAIEHLHNMGIA---YRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
            +I   + +LH+  I    +RDLK  NILI Q     + + DLS  ++K T F       
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQK----VENGDLSNKILKITDF------- 160
Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
                            +   W      +  G      A ++P   R   F  G      
Sbjct: 161 ----------------GLAREWHRTTKMSAAG----AYAWMAPEVIRASMFSKGS----- 195
Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
                                D W+ G+L +E+L G  PFRG +       V M
Sbjct: 196 ---------------------DVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAM 228

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 42  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 98
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 99  ----GNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 153
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 154 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 181

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 134 IICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           I+ A+EHLH+ + + +RD+KP N+LI   G V + DF +S  LV   A
Sbjct: 118 IVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVA 165

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 35  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 91
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  S  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 92  ----GNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 146
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR L+    F   +    KFP+
Sbjct: 147 LVKVADFGLSR-LMTGDTFTAHA--GAKFPI 174

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+         +   P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 14  LLGSGGFGSVY----SGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 69
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 70  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 127
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 128 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 169

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 38  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 93
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 94  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 151
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 152 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 193

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---H 82
           +G GA GTV+    +A DP +    ALK V     + +         E+ +L RL    H
Sbjct: 12  IGVGAYGTVY----KARDPHSGHFVALKSV--RVPNGEEGLPISTVREVALLRRLEAFEH 65
Query: 83  PFLPKLLGSLETD----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +L+    T     E     V      DL     K          I+  + + +  +
Sbjct: 66  PNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGL 125
Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           + LH   I +RDLKPENIL+   G V L DF L+R    + A +
Sbjct: 126 DFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALD 169

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 14  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 60
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 61  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 120
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +  +    
Sbjct: 121 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTEPCY- 179
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 180 -TPYYVAPEVLGPEKYDKSCDMW 201

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 16  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 71
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 72  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 129
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 130 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 171

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL+  K LG GA G V    +  A    +    LKV  K      H  E+ A   E+++
Sbjct: 38  NNLQFGKTLGAGAFGKVV---EATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 94
Query: 77  LSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYK-------QNDRVFSPSVI 127
           +S L  H  +  LLG+      +     YC  GDL N LR K       ++ R      +
Sbjct: 95  MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDL 154
Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLSRNLVKKTAFEKQSL 186
             + S++   +  L +    +RD+   N+L+  +GHV  + DF L+R+++  + +  +  
Sbjct: 155 LHFSSQVAQGMAFLASKNCIHRDVAARNVLLT-NGHVAKIGDFGLARDIMNDSNYIVKG- 212
Query: 187 NNNKFPV 193
            N + PV
Sbjct: 213 -NARLPV 218

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 58  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 113
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 114 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 171
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 172 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 213

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD 109
           ++L V  K+      E E   + E  V+  + HP L +LLG    +      + +   G+
Sbjct: 38  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGN 96
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           L     + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++  V + DF
Sbjct: 97  LLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADF 156
Query: 170 DLSRNLVKKTAFEKQSLNNNKFPV 193
            LSR +   T     +    KFP+
Sbjct: 157 GLSRLMTGDTX---TAHAGAKFPI 177

>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+         +   P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 11  LLGSGGFGSVY----SGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 66
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 67  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 124
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 125 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 166

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 26/167 (15%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCP------FALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           LG+GA G VFL     A+    CP       A+K +  ++ +A+ +  R A     +L+ 
Sbjct: 21  LGEGAFGKVFL-----AECYNLCPEQDKILVAVKTLKDASDNARKDFHREAE----LLTN 71
Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVF----------SPSVIR 128
           L H  + K  G     + L     Y   GDLN  LR    D V           + S + 
Sbjct: 72  LQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQML 131
Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
               +I   + +L +    +RDL   N L+ ++  V + DF +SR++
Sbjct: 132 HIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDV 178

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 16  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 71
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 72  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 129
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 130 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 171

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+         +   P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 11  LLGSGGFGSVY----SGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 66
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 67  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 124
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 125 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 166

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 30  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 85
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 86  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 143
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 144 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 185

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+         +   P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 11  LLGSGGFGSVY----SGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 66
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 67  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 124
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 125 HCHNXGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 166

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 31  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 86
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 87  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 144
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 145 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 186

>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 43  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 98
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 99  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 156
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 157 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 198

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 31  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 86
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 87  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 144
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 145 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 186

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           ++++L+ L  +G G  G V+ +  R          A+K + +S      E  +R   ++ 
Sbjct: 23  EINDLENLGEMGSGTCGQVWKMRFRKTGHV----IAVKQMRRS---GNKEENKRILMDLD 75
Query: 76  VLSRLSH--PFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           V+ + SH  P++ +  G+    TD F+A  +       +     K   R+  P   R   
Sbjct: 76  VVLK-SHDCPYIVQCFGTFITNTDVFIAMEL-------MGTCAEKLKKRMQGPIPERILG 127
Query: 132 SEIICAIEHLHNM----GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
              +  ++ L+ +    G+ +RD+KP NIL+ + G + L DF +S  LV   A ++ +
Sbjct: 128 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSA 185

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 31  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 86
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 87  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 144
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 145 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 186

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 58  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 113
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 114 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 171
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 172 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 213

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK-------STLHAKHEAE 67
           +D   +K  K++G G  G V             C   LKV  K        TL A +  +
Sbjct: 26  IDASCIKIEKVIGVGEFGEV-------------CSGRLKVPGKREICVAIKTLKAGYTDK 72
Query: 68  RRARW--EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPS 125
           +R  +  E  ++ +  HP +  L G +   + +     Y   G L+    ++ND  F+  
Sbjct: 73  QRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAF-LRKNDGRFTVI 131
Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            +   L  I   +++L +M   +RDL   NIL+  +    ++DF +SR L
Sbjct: 132 QLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVCKVSDFGMSRVL 181

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 50  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 105
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 106 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 163
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 164 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 205

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---H 82
           +G GA GTV+    +A DP +    ALK V     + +         E+ +L RL    H
Sbjct: 12  IGVGAYGTVY----KARDPHSGHFVALKSV--RVPNGEEGLPISTVREVALLRRLEAFEH 65
Query: 83  PFLPKLLGSLETD----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +L+    T     E     V      DL     K          I+  + + +  +
Sbjct: 66  PNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGL 125
Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + LH   I +RDLKPENIL+   G V L DF L+R
Sbjct: 126 DFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR 160

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 43  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 98
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 99  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 156
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 157 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 198

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 63  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 118
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 119 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 176
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 177 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 218

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---H 82
           +G GA GTV+    +A DP +    ALK V     + +         E+ +L RL    H
Sbjct: 12  IGVGAYGTVY----KARDPHSGHFVALKSV--RVPNGEEGLPISTVREVALLRRLEAFEH 65
Query: 83  PFLPKLLGSLETD----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +L+    T     E     V      DL     K          I+  + + +  +
Sbjct: 66  PNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGL 125
Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           + LH   I +RDLKPENIL+   G V L DF L+R
Sbjct: 126 DFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR 160

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 22  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 68
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 69  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 128
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 129 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 187
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 188 -TPYYVAPEVLGPEKYDKSCDMW 209

>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Naphtho-Difuran Ligand Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 44  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 99
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 100 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 157
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 158 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 199

>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With Ly333531 Length = 312

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 43  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 98
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 99  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 156
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 157 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 198

>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its Consensus Peptide Pimtide Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 43  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 98
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 99  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 156
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 157 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 198

>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2,3- A]carbazole Ligand Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 44  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 99
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 100 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 157
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 158 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 199

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 30  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 85
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 86  GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 143
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 144 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 185

>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And The Jnk Inhibitor V Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 44  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 99
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 100 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 157
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 158 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 199

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 30  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 76
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 77  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 136
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 137 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 195
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 196 -TPYYVAPEVLGPEKYDKSCDMW 217

>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Beta Carboline Ligand I Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR--WEIRVLSRLSH 82
           +LG G  G+V+    R +D     P A+K V+K  +    E     R   E+ +L ++S 
Sbjct: 44  LLGSGGFGSVY-SGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 99
Query: 83  PF--LPKLLGSLE-TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
            F  + +LL   E  D F+       P  DL    +          + R +  +++ A+ 
Sbjct: 100 GFSGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITERGALQEELARSFFWQVLEAVR 157
Query: 140 HLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAF 181
           H HN G+ +RD+K ENILI    G + L DF  S  L+K T +
Sbjct: 158 HCHNCGVLHRDIKDENILIDLNRGELKLIDFG-SGALLKDTVY 199

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL+  K LG GA G V    +  A    +    LKV  K      H  E+ A   E+++
Sbjct: 46  NNLQFGKTLGAGAFGKVV---EATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102
Query: 77  LSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYK----QNDRVF-------S 123
           +S L  H  +  LLG+      +     YC  GDL N LR K    + D  F       S
Sbjct: 103 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTLS 162
Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLSRNLVKKTAFE 182
              +  + S++   +  L +    +RD+   N+L+  +GHV  + DF L+R+++  + + 
Sbjct: 163 TRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT-NGHVAKIGDFGLARDIMNDSNYI 221
Query: 183 KQSLNNNKFPV 193
            +   N + PV
Sbjct: 222 VKG--NARLPV 230

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL+  K LG GA G V    +  A    +    LKV  K      H  E+ A   E+++
Sbjct: 46  NNLQFGKTLGAGAFGKVV---EATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102
Query: 77  LSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYK----QNDRVF-------S 123
           +S L  H  +  LLG+      +     YC  GDL N LR K    + D  F       S
Sbjct: 103 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTAS 162
Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLSRNLVKKTAFE 182
              +  + S++   +  L +    +RD+   N+L+  +GHV  + DF L+R+++  + + 
Sbjct: 163 TRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLL-TNGHVAKIGDFGLARDIMNDSNYI 221
Query: 183 KQSLNNNKFPV 193
            +   N + PV
Sbjct: 222 VKG--NARLPV 230

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKG  G+V     +  D +     A+K++ K+ + A  + E   R E   +    HP
Sbjct: 29  RMLGKGEFGSVREAQLKQEDGSF-VKVAVKML-KADIIASSDIEEFLR-EAACMKEFDHP 85
Query: 84  FLPKLLG-SLETDE-----FLAWAVPYCPGGDLNVL----RYKQNDRVFSPSVIRFYLSE 133
            + KL+G SL +            +P+   GDL+      R  +N        +  ++ +
Sbjct: 86  HVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVD 145
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           I C +E+L +    +RDL   N ++ +   V + DF LSR +     + +     +K PV
Sbjct: 146 IACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGC--ASKLPV 203

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 20  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 66
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 67  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 126
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 127 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 185
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 186 -TPYYVAPEVLGPEKYDKSCDMW 207

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 21  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 67
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 68  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 127
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 128 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 186
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 187 -TPYYVAPEVLGPEKYDKSCDMW 208

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH- 82
           ++LG G  G V  + ++         FALK++             +AR E+ +  R S  
Sbjct: 74  QVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVELHWRASQC 120
Query: 83  PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +++   E      + L   +    GG+L      + D+ F+       +  I  AI
Sbjct: 121 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 180
Query: 139 EHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           ++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +          + V P
Sbjct: 181 QYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY--TPYYVAP 238
Query: 196 VTENPKRHRRILTRW 210
               P+++ +    W
Sbjct: 239 EVLGPEKYDKSCDMW 253

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 16  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 62
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 63  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 122
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 123 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 181
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 182 -TPYYVAPEVLGPEKYDKSCDMW 203

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 14  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 60
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 61  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 120
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 121 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 179
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 180 -TPYYVAPEVLGPEKYDKSCDMW 201

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARW- 72
           +D   +K  K++G G  G V     R   P  R    A+K     TL A +  ++R  + 
Sbjct: 11  IDASCIKIEKVIGVGEFGEV--CSGRLKVPGKREICVAIK-----TLKAGYTDKQRRDFL 63
Query: 73  -EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  ++ +  HP +  L G +   + +     Y   G L+    ++ND  F+   +   L
Sbjct: 64  SEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAF-LRKNDGRFTVIQLVGML 122
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             I   +++L +M   +RDL   NIL+  +    ++DF +SR L
Sbjct: 123 RGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVL 166

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 16  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 62
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 63  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 122
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 123 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 181
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 182 -TPYYVAPEVLGPEKYDKSCDMW 203

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGD 109
           ++L V  K+      E E   + E  V+  + HP L +LLG    +      + +   G+
Sbjct: 42  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGN 100
Query: 110 LNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           L     + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++  V + DF
Sbjct: 101 LLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADF 160
Query: 170 DLSRNLVKKTAFEKQSLNNNKFPV 193
            LSR +   T     +    KFP+
Sbjct: 161 GLSRLMTGDTY---TAHAGAKFPI 181

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH- 82
           ++LG G  G V  + ++         FALK++             +AR E+ +  R S  
Sbjct: 68  QVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVELHWRASQC 114
Query: 83  PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +++   E      + L   +    GG+L      + D+ F+       +  I  AI
Sbjct: 115 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 174
Query: 139 EHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           ++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +          + V P
Sbjct: 175 QYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY--TPYYVAP 232
Query: 196 VTENPKRHRRILTRW 210
               P+++ +    W
Sbjct: 233 EVLGPEKYDKSCDMW 247

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARW- 72
           +D   +K  K++G G  G V     R   P  R    A+K     TL A +  ++R  + 
Sbjct: 5   IDASCIKIEKVIGVGEFGEV--CSGRLKVPGKREICVAIK-----TLKAGYTDKQRRDFL 57
Query: 73  -EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  ++ +  HP +  L G +   + +     Y   G L+    ++ND  F+   +   L
Sbjct: 58  SEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAF-LRKNDGRFTVIQLVGML 116
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             I   +++L +M   +RDL   NIL+  +    ++DF +SR L
Sbjct: 117 RGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVL 160

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 15  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 61
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 62  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 121
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 122 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 180
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 181 -TPYYVAPEVLGPEKYDKSCDMW 202

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 15  LDLDNLKALKI-LGKGAMGTV----FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
           L  DNL    I LG G  G+V    + +  +  D       A+KV+ + T  A  E   R
Sbjct: 6   LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQID------VAIKVLKQGTEKADTEEMMR 59
Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
              E +++ +L +P++ +L+G  +  E L   +    GG L+     + + +   +V   
Sbjct: 60  ---EAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAEL 115
Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            L ++   +++L      +RDL   N+L+    +  ++DF LS+ L
Sbjct: 116 -LHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL 160

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+L+ +  LG+GA G   +V      P+ +    +  V +       + ++R   ++ + 
Sbjct: 34  DDLEPIXELGRGAYG---VVEKXRHVPSGQ----IXAVKRIRATVNSQEQKRLLXDLDIS 86
Query: 78  SR-LSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQ---NDRVFSPSVIRFYL 131
            R +  PF     G+L  E D    W         L+   YKQ     +     ++    
Sbjct: 87  XRTVDCPFTVTFYGALFREGD---VWICXELXDTSLDKF-YKQVIDKGQTIPEDILGKIA 142
Query: 132 SEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
             I+ A+EHLH+ + + +RD+KP N+LI   G V   DF +S  LV   A
Sbjct: 143 VSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVA 192

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +++K +K LG G  G V++ +   +   A     +K +   T+  +   E     E  ++
Sbjct: 13  ESIKLVKRLGAGQFGEVWMGYYNNSTKVA-----VKTLKPGTMSVQAFLE-----EANLM 62
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIIC 136
             L H  L +L   +  +E +     Y   G L + L+  +  +V  P +I F  ++I  
Sbjct: 63  KTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFS-AQIAE 121
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            + ++      +RDL+  N+L+ +S    + DF L+R +      E  +    KFP+
Sbjct: 122 GMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN---EYTAREGAKFPI 175

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 73  EIRVLSRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDL-NVLRYKQNDRVF--SPSVI 127
           E+ +L  L HP + +    +   T+  L   + YC GGDL +V+     +R +     V+
Sbjct: 55  EVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVL 114
Query: 128 RFYLSEIICAIEHLHNMG-----IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           R  ++++  A++  H        + +RDLKP N+ +    +V L DF L+R L     F 
Sbjct: 115 RV-MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFA 173
Query: 183 KQSLNNNKFPVLPVTENPKRHRRI 206
           K+      F   P   +P++  R+
Sbjct: 174 KE------FVGTPYYMSPEQMNRM 191

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 24  KILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARW--EIRVLSRL 80
           KI+G G  G V   + R   P  R  P A+K      L A +   +R  +  E  ++ + 
Sbjct: 55  KIIGSGDSGEV--CYGRLRVPGQRDVPVAIK-----ALKAGYTERQRRDFLSEASIMGQF 107
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            HP + +L G +           Y   G L+    + +D  F+   +   L  +   + +
Sbjct: 108 DHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTF-LRTHDGQFTIMQLVGMLRGVGAGMRY 166
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           L ++G  +RDL   N+L+  +    ++DF LSR L
Sbjct: 167 LSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 63/156 (40%), Gaps = 12/156 (7%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE----AERRARWEIRVLSRLS 81
           +G GA GTV+    +A DP +    ALK V              +  R    +R L    
Sbjct: 17  IGVGAYGTVY----KARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFE 72
Query: 82  HPFLPKLLGSLETD----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           HP + +L+    T     E     V      DL     K          I+  + + +  
Sbjct: 73  HPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRG 132
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++ LH   I +RDLKPENIL+   G V L DF L+R
Sbjct: 133 LDFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR 168

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HAKHEAERRARWEIRVLSRL 80
           L  +G+G  G VF    R            KV  K  L  + K      A  EI++L  L
Sbjct: 23  LAKIGQGTFGEVFKARHRKT--------GQKVALKKVLMENEKEGFPITALREIKILQLL 74
Query: 81  SHPFLPKLLGSLETDEFLAWAVPY--CPGGDLNVLRYKQNDR--VFSPSVIRFYLSEI-- 134
            H  +  L+    T      A PY  C      V  + ++D   + S  +++F LSEI  
Sbjct: 75  KHENVVNLIEICRTK-----ASPYNRCKASIYLVFDFCEHDLAGLLSNVLVKFTLSEIKR 129
Query: 135 -----ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
                +  + ++H   I +RD+K  N+LI + G + L DF L+R
Sbjct: 130 VMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR 173

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 24  KILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARW--EIRVLSRL 80
           KI+G G  G V   + R   P  R  P A+K      L A +   +R  +  E  ++ + 
Sbjct: 55  KIIGSGDSGEV--CYGRLRVPGQRDVPVAIK-----ALKAGYTERQRRDFLSEASIMGQF 107
Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            HP + +L G +           Y   G L+    + +D  F+   +   L  +   + +
Sbjct: 108 DHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTF-LRTHDGQFTIMQLVGMLRGVGAGMRY 166
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           L ++G  +RDL   N+L+  +    ++DF LSR L
Sbjct: 167 LSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 42  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 98
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 99  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 153
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 154 LVKVADFGLSRLMTGDTX---TAHAGAKFPI 181

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           +D+  +K  +++G G  G V   H +   P  R  F    V   TL + +  ++R  +  
Sbjct: 4   IDISCVKIEQVIGAGEFGEVCSGHLKL--PGKREIF----VAIKTLKSGYTEKQRRDFLS 57
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  ++ +  HP +  L G +     +     +   G L+    +QND  F+   +   L 
Sbjct: 58  EASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSF-LRQNDGQFTVIQLVGMLR 116
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            I   +++L +M   +R L   NIL+  +    ++DF LSR L   T+
Sbjct: 117 GIAAGMKYLADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTS 164

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           +    VGT  +++PEV+    +   VD W+LGI+  EM+ G  P+   +  +  + +   
Sbjct: 197 KRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDS 256
Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P  +         L D ++R+L +DP +R      A E+ +H F 
Sbjct: 257 PPPKLKNSHKVSPVLRDFLERMLVRDPQER----ATAQELLDHPFL 298

>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Potent 3-Aminopyrazole Atp Site Inhibitor Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 22/166 (13%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK++             +AR E+ 
Sbjct: 16  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKMLQDCP---------KARREVE 62
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L   +    GG+L      + D+ F+       
Sbjct: 63  LHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEI 122
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSR 173
           +  I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++
Sbjct: 123 MKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 41  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 97
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 98  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 152
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 153 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 180

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 39  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 95
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 96  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 150
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 151 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 178

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 37  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 93
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 94  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 148
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 149 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 176

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG GA G V+   D+  +      F  K         +     +   EI +LSR+ H  +
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG 145
            K+L   E   F    +    G  L++  +          +  +   +++ A+ +L    
Sbjct: 92  IKVLDIFENQGFFQLVMEK-HGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKD 150
Query: 146 IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
           I +RD+K ENI+I +   + L DF  +  L +   F
Sbjct: 151 IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLF 186

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 42  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 98
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 99  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 153
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 154 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 181

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 50  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 106
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 107 ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 161
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 162 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 189

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 38  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 94
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 95  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 149
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 150 LVKVADFGLSRLMTGDTY---TAPAGAKFPI 177

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 37  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 93
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 94  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 148
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 149 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 176

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 42  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 98
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 99  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 153
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 154 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 181

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 39  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 95
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 96  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 150
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 151 LVKVADFGLSRLMTGDTY---TAHAGAKFPI 178

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 39  YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 95
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  +  V+ +  ++I  A+E+L      +RDL   N L+ ++ 
Sbjct: 96  ----GNLLDYLR-ECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH 150
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 151 LVKVADFGLSRLMTGDTY---TAPAGAKFPI 178

>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1 Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 119 DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-----LTDFDLSR 173
           DR FS   +     ++I  +E++H+  + YRD+KPEN LI + G+ T     + DF L++
Sbjct: 99  DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAK 158
Query: 174 NLV 176
             +
Sbjct: 159 EYI 161

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ 184
           YL + + A+ HLH+ G+ + D+KP NI +   G   L DF L   L    A E Q
Sbjct: 162 YLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQ 216

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 121/333 (36%), Gaps = 87/333 (26%)
Query: 17  LDNLKALKI--LGKGAMGTVFLV---HDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           +DN   L I  LG+G    V LV   HD          +ALK +       + EA+R A 
Sbjct: 26  IDNKHYLFIQKLGEGGFSYVDLVEGLHDGHF-------YALKRILCHEQQDREEAQREAD 78
Query: 72  WEIRVLSRL-SHPFLPKLLGSLETD---EFLAWAV-PYCPGGDL--NVLRYKQNDRVFSP 124
                + RL +HP + +L+     +   +  AW + P+   G L   + R K      + 
Sbjct: 79  -----MHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTE 133
Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ 184
             I + L  I   +E +H  G A+RDLKP NIL+   G   L D              +Q
Sbjct: 134 DQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQ 193
Query: 185 SLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER 244
           +L                    L  W               +A+   +S           
Sbjct: 194 ALT-------------------LQDW---------------AAQRCTIS----------- 208
Query: 245 SNSFVGTEEYVSPEVVRGDGH---EFAVDWWALGILTYEMLYGTTPF-----RGKNRKET 296
                    Y +PE+     H   +   D W+LG + Y M++G  P+     +G +    
Sbjct: 209 ---------YRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALA 259
Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
            +N L   P+     +AL  L+  ++  DP +R
Sbjct: 260 VQNQL-SIPQSPRHSSALWQLLNSMMTVDPHQR 291

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +++K +K LG G  G V++ +   +   A     +K +   T+  +   E     E  ++
Sbjct: 12  ESIKLVKKLGAGQFGEVWMGYYNNSTKVA-----VKTLKPGTMSVQAFLE-----EANLM 61
Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIIC 136
             L H  L +L   +  +E +     +   G L + L+  +  +V  P +I F  ++I  
Sbjct: 62  KTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFS-AQIAE 120
Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            + ++      +RDL+  N+L+ +S    + DF L+R +      E  +    KFP+
Sbjct: 121 GMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN---EYTAREGAKFPI 174

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 12/183 (6%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           +D+  +K  +++G G  G V     +A      C      V   TL   +   +R  +  
Sbjct: 13  IDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESC------VAIKTLKGGYTERQRREFLS 66
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  ++ +  HP + +L G +     +     +   G L+    + ND  F+   +   L 
Sbjct: 67  EASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSF-LRLNDGQFTVIQLVGMLR 125
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA--FEKQSLNNNK 190
            I   + +L  M   +RDL   NIL+  +    ++DF LSR L + ++   E  SL   K
Sbjct: 126 GIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSL-GGK 184
Query: 191 FPV 193
            P+
Sbjct: 185 IPI 187

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 18/206 (8%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LG+GA G V     +   PT      +  + K     K     R   EI++L    H  
Sbjct: 18  LLGEGAYGVVCSATHK---PTGE----IVAIKKIEPFDKPLFALRTLREIKILKHFKHEN 70
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNV-LRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           +  +      D F  +   Y     +   L    + ++ S   I++++ + + A++ LH 
Sbjct: 71  IITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHG 130
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
             + +RDLKP N+LI  +  + + DF L+R        ++ + +N++    P  +     
Sbjct: 131 SNVIHRDLKPSNLLINSNCDLKVCDFGLAR------IIDESAADNSE----PTGQQSGMT 180
Query: 204 RRILTRWLHALPENKTGLKKTKSARV 229
             + TRW  A     T  K +++  V
Sbjct: 181 EXVATRWYRAPEVMLTSAKYSRAMDV 206

>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With Inhibitor Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 119 DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-----LTDFDLSR 173
           DR FS   +     ++I  +E++H+  + YRD+KPEN LI + G+ T     + DF L++
Sbjct: 99  DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158
Query: 174 NLV 176
             +
Sbjct: 159 EYI 161

>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3 Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 119 DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-----LTDFDLSR 173
           DR FS   +     ++I  +E++H+  + YRD+KPEN LI + G+ T     + DF L++
Sbjct: 120 DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 179
Query: 174 NLV 176
             +
Sbjct: 180 EYI 182

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL+  K LG GA G V    +  A    +    LKV  K      H  E+ A   E+++
Sbjct: 46  NNLQFGKTLGAGAFGKVV---EATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102
Query: 77  LSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQN---DRVFSPS------ 125
           +S L  H  +  LLG+      +     YC  GDL N LR K+    +  ++PS      
Sbjct: 103 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKRPPGLEYSYNPSHNPEEQ 162
Query: 126 ----VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLSRNLVKKTA 180
                +  + S++   +  L +    +RD+   N+L+  +GHV  + DF L+R+++  + 
Sbjct: 163 LSSRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT-NGHVAKIGDFGLARDIMNDSN 221
Query: 181 FEKQSLNNNKFPV 193
           +  +   N + PV
Sbjct: 222 YIVKG--NARLPV 232

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 61  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 113
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN    K+  +   P   + Y   ++ A+  
Sbjct: 114 HSDKIIRLYDYEITDQYI-YMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHT 170
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +H  GI + DLKP N LI   G + L DF ++  +   T 
Sbjct: 171 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 61  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 113
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN    K+  +   P   + Y   ++ A+  
Sbjct: 114 HSDKIIRLYDYEITDQYI-YMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHT 170
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +H  GI + DLKP N LI   G + L DF ++  +   T 
Sbjct: 171 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           ++D  +  ++ G+G  GTV L  +++          + V  K  +       R  +  ++
Sbjct: 21  EMDRFQVERMAGQGTFGTVQLGKEKST--------GMSVAIKKVIQDPRFRNRELQI-MQ 71
Query: 76  VLSRLSHPFLPKLLGSLET-------DEFLAWAVPYCPGGDLNVLR-YKQNDRVFSPSVI 127
            L+ L HP + +L     T       D +L   + Y P       R Y +      P +I
Sbjct: 72  DLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILI 131
Query: 128 RFYLSEIICAIEHLH--NMGIAYRDLKPENILIRQS-GHVTLTDFDLSRNL 175
           + +L ++I +I  LH  ++ + +RD+KP N+L+ ++ G + L DF  ++ L
Sbjct: 132 KVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKL 182

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 68  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 124
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 125 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 183
Query: 193 V 193
           V
Sbjct: 184 V 184

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 18/206 (8%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LG+GA G V     +   PT      +  + K     K     R   EI++L    H  
Sbjct: 18  LLGEGAYGVVCSATHK---PTGE----IVAIKKIEPFDKPLFALRTLREIKILKHFKHEN 70
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNV-LRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           +  +      D F  +   Y     +   L    + ++ S   I++++ + + A++ LH 
Sbjct: 71  IITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHG 130
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
             + +RDLKP N+LI  +  + + DF L+R        ++ + +N++    P  +     
Sbjct: 131 SNVIHRDLKPSNLLINSNCDLKVCDFGLAR------IIDESAADNSE----PTGQQSGMT 180
Query: 204 RRILTRWLHALPENKTGLKKTKSARV 229
             + TRW  A     T  K +++  V
Sbjct: 181 EYVATRWYRAPEVMLTSAKYSRAMDV 206

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R    VGT  +++PE++    +   VD W+LGI+  EM+ G  P+  +   +  + +   
Sbjct: 303 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN 362
Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P  +        +L   + RLL +DP +R      A E+ +H F 
Sbjct: 363 LPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA----TAAELLKHPFL 404

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           +D+  +K  +++G G  G V     +A      C      V   TL   +   +R  +  
Sbjct: 11  IDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESC------VAIKTLKGGYTERQRREFLS 64
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  ++ +  HP + +L G +     +     +   G L+    + ND  F+   +   L 
Sbjct: 65  EASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSF-LRLNDGQFTVIQLVGMLR 123
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            I   + +L  M   +RDL   NIL+  +    ++DF LSR L + ++
Sbjct: 124 GIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSS 171

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 14  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 66
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN   + +  +   P   + Y   ++ A+  
Sbjct: 67  HSDKIIRLYDYEITDQYI-YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLEAVHT 123
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +H  GI + DLKP N LI   G + L DF ++  +   T 
Sbjct: 124 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 162

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 56  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 112
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 113 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 171
Query: 193 V 193
           V
Sbjct: 172 V 172

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 58  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 114
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K    + K+P
Sbjct: 115 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ-THGKWP 173
Query: 193 V 193
           V
Sbjct: 174 V 174

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 35/53 (66%)
Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           FS   I++ + +++  ++++H+ G+ +RDLKP N+ + +   + + DF L+R+
Sbjct: 141 FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARH 193

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 62  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 118
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 119 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 177
Query: 193 V 193
           V
Sbjct: 178 V 178

>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From Mycobacterium Tuberculosis In Complex With Tetrahydrobenzothiophene Ax20017 Length = 681

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-VLSRLSHPF 84
           +  G +G ++L  DR  +          VV K  +H+     +      R  L+ + HP 
Sbjct: 88  IAHGGLGWIYLALDRNVN-------GRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPS 140
Query: 85  LPKLLGSLE-TD---EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
           + ++   +E TD   + + + V    GG    L+  +  ++     I  YL EI+ A+ +
Sbjct: 141 IVQIFNFVEHTDRHGDPVGYIVMEYVGG--QSLKRSKGQKLPVAEAIA-YLLEILPALSY 197
Query: 141 LHNMGIAYRDLKPENILIRQ 160
           LH++G+ Y DLKPENI++ +
Sbjct: 198 LHSIGLVYNDLKPENIMLTE 217

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 61  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 113
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN    K+  +   P   + Y   ++ A+  
Sbjct: 114 HSDKIIRLYDYEITDQYI-YMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHT 170
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +H  GI + DLKP N LI   G + L DF ++  +   T 
Sbjct: 171 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 35/53 (66%)
Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           FS   I++ + +++  ++++H+ G+ +RDLKP N+ + +   + + DF L+R+
Sbjct: 123 FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARH 175

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 33  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 85
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN   + +  +   P   + Y   ++ A+  
Sbjct: 86  HSDKIIRLYDYEITDQYI-YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLEAVHT 142
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +H  GI + DLKP N LI   G + L DF ++  +   T 
Sbjct: 143 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 181

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 78  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 134
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 135 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 193
Query: 193 V 193
           V
Sbjct: 194 V 194

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 78  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 134
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 135 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 193
Query: 193 V 193
           V
Sbjct: 194 V 194

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 420 EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 476
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 477 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 535
Query: 193 V 193
           V
Sbjct: 536 V 536

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 23  LKILGKGAMGTVFLVHD-RAADPTARCPFALKVVDKSTLHAKHEAERRARW-----EIRV 76
           L+ +G G+ G V+   D R ++  A        + K +   K   E+   W     E+R 
Sbjct: 59  LREIGHGSFGAVYFARDVRNSEVVA--------IKKMSYSGKQSNEK---WQDIIKEVRF 107
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           L +L HP   +  G     E  AW V  YC G   ++L   +  +      I       +
Sbjct: 108 LQKLRHPNTIQYRGCY-LREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGAL 164
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
             + +LH+  + +RD+K  NIL+ + G V L DF  +  +     F
Sbjct: 165 QGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXF 210

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 50  FALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-------EFLAWAV 102
           ++L V  K+      E E   + E  V+  + HP L +LLG    +       EF+ +  
Sbjct: 244 YSLTVAVKTLKEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-- 300
Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G  L+ LR + N +  S  V+ +  ++I  A+E+L      +R+L   N L+ ++ 
Sbjct: 301 ----GNLLDYLR-ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENH 355
Query: 163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
            V + DF LSR +   T     +    KFP+
Sbjct: 356 LVKVADFGLSRLMTGDT---YTAHAGAKFPI 383

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 421 EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 477
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 478 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 536
Query: 193 V 193
           V
Sbjct: 537 V 537

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 76  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 132
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K +  + K+P
Sbjct: 133 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK-AQTHGKWP 191
Query: 193 V 193
           V
Sbjct: 192 V 192

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 95  DEFLAWAVPYCPGGDLNVLR-YKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP 153
           +++L   + Y P     VL+ + ++ R    ++I  Y+ ++  A+  +H++GI +RD+KP
Sbjct: 110 NKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKP 169
Query: 154 ENILIRQSGH-VTLTDFDLSRNLV 176
           +N+L+    + + L DF  ++ L+
Sbjct: 170 QNLLVNSKDNTLKLCDFGSAKKLI 193

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 33  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 85
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN   + +  +   P   + Y   ++ A+  
Sbjct: 86  HSDKIIRLYDYEITDQYI-YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLEAVHT 142
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +H  GI + DLKP N LI   G + L DF ++  +
Sbjct: 143 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQM 176

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R    VGT  +++PE++    +   VD W+LGI+  EM+ G  P+  +   +  + +   
Sbjct: 226 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN 285
Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P  +        +L   + RLL +DP +R      A E+ +H F 
Sbjct: 286 LPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA----TAAELLKHPFL 327

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 127/374 (33%), Gaps = 117/374 (31%)
Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFL 85
           LG+GA G V    D  A         +K VD+            AR EI+VL  L+    
Sbjct: 22  LGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYC--------EAARSEIQVLEHLNTTDP 73
Query: 86  PKLLGSLETDEFLAWAVPYCPGGDLNVLR----YKQNDRV-FSPSVIRFYLSEIICAIEH 140
                 ++  E+       C   +L  L      K+N  + F    IR    +I  ++  
Sbjct: 74  NSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNF 133
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           LH+  + + DLKPENIL  QS +                                   NP
Sbjct: 134 LHSNKLTHTDLKPENILFVQSDYTE-------------------------------AYNP 162
Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSP----VSRRQQSFDNGERSNSFVGTEEYVS 256
           K                   +K+ +   ++P    V     ++D+ E  ++ V T  Y +
Sbjct: 163 K-------------------IKRDERTLINPDIKVVDFGSATYDD-EHHSTLVSTRHYRA 202
Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE---TFRNVLMKTPEFVGQRT- 312
           PEV+   G     D W++G +  E   G T F   + KE       +L   P+ + Q+T 
Sbjct: 203 PEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTR 262
Query: 313 -----------------------------------------ALTDLIQRLLEKDPVKRLG 331
                                                     L DLIQ++LE DP KR+ 
Sbjct: 263 KRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRIT 322
Query: 332 YLRGACEIKEHVFF 345
            LR A    +H FF
Sbjct: 323 -LREAL---KHPFF 332

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R    VGT  +++PE++    +   VD W+LGI+  EM+ G  P+  +   +  + +   
Sbjct: 181 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN 240
Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P  +        +L   + RLL +DP +R      A E+ +H F 
Sbjct: 241 LPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 282

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  V+ +L +P++ +++G  E + ++   +     G LN  +Y Q +R      I   + 
Sbjct: 62  EANVMQQLDNPYIVRMIGICEAESWML-VMEMAELGPLN--KYLQQNRHVKDKNIIELVH 118
Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL-VKKTAFEKQSLNNNKF 191
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L   +  ++ Q+  + K+
Sbjct: 119 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQT--HGKW 176
Query: 192 PV 193
           PV
Sbjct: 177 PV 178

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 23  LKILGKGAMGTVFLVHD-RAADPTARCPFALKVVDKSTLHAKHEAERRARW-----EIRV 76
           L+ +G G+ G V+   D R ++  A        + K +   K   E+   W     E+R 
Sbjct: 20  LREIGHGSFGAVYFARDVRNSEVVA--------IKKMSYSGKQSNEK---WQDIIKEVRF 68
Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           L +L HP   +  G     E  AW V  YC G   ++L   +  +      I       +
Sbjct: 69  LQKLRHPNTIQYRGCY-LREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGAL 125
Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
             + +LH+  + +RD+K  NIL+ + G V L DF  +  +     F
Sbjct: 126 QGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXF 171

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR---WEIRVLSRL 80
           KILG+G  G+V   + +  D T+     LKV  K T+   + ++R       E   +   
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTS-----LKVAVK-TMKLDNSSQREIEEFLSEAACMKDF 93
Query: 81  SHPFLPKLLG-----SLETDEFLAWAVPYCPGGDLNVL----RYKQNDRVFSPSVIRFYL 131
           SHP + +LLG     S +        +P+   GDL+      R +   +      +  ++
Sbjct: 94  SHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFM 153
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
            +I   +E+L N    +RDL   N ++R    V + DF LS+ +     + +  +   K 
Sbjct: 154 VDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRI--AKM 211
Query: 192 PV 193
           PV
Sbjct: 212 PV 213

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 117 QNDRVFSP-SVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
           +N   F P  VI+  +  ++ +  ++HN   I +RD+KP NIL+ ++G V L+DF  S  
Sbjct: 142 KNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEY 201
Query: 175 LVKK 178
           +V K
Sbjct: 202 MVDK 205

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R    VGT  +++PE++    +   VD W+LGI+  EM+ G  P+  +   +  + +   
Sbjct: 183 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN 242
Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P  +        +L   + RLL +DP +R      A E+ +H F 
Sbjct: 243 LPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 284

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 13  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 65
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN   + +  +   P   + Y   ++ A+  
Sbjct: 66  HSDKIIRLYDYEITDQYI-YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLEAVHT 122
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +H  GI + DLKP N LI   G + L DF ++  +   T 
Sbjct: 123 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 161

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 24  KILGKGAMGTVF--LVHDRAADPTARCPFALKVVDK-STLHAKHEAERRARWEIRVLSRL 80
           +ILG+G  G V+  +  +   +   +   A+K   K  TL  K +    A     ++  L
Sbjct: 18  RILGEGFFGEVYEGVYTNHKGE---KINVAVKTCKKDCTLDNKEKFMSEAV----IMKNL 70
Query: 81  SHPFLPKLLGSLETDEFLAWAV-PYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSEIICA 137
            HP + KL+G +E +    W +    P G+L   + R K + +V +   +  Y  +I  A
Sbjct: 71  DHPHIVKLIGIIEEEP--TWIIMELYPYGELGHYLERNKNSLKVLT---LVLYSLQICKA 125
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           + +L ++   +RD+   NIL+     V L DF LSR  ++   + K S+   + P+  ++
Sbjct: 126 MAYLESINCVHRDIAVRNILVASPECVKLGDFGLSR-YIEDEDYYKASV--TRLPIKWMS 182
Query: 198 ENPKRHRRILTR---WLHAL 214
                 RR  T    W+ A+
Sbjct: 183 PESINFRRFTTASDVWMFAV 202

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R    VGT  +++PE++    +   VD W+LGI+  EM+ G  P+  +   +  + +   
Sbjct: 172 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN 231
Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P  +        +L   + RLL +DP +R      A E+ +H F 
Sbjct: 232 LPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 273

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 63/213 (29%)
Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           ++ A+ +LHN G+ +RD+K ++IL+   G + L+DF     + K                
Sbjct: 150 VLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSK---------------- 193
Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
               E PKR   + T +  A PE  + L                            GTE 
Sbjct: 194 ----EVPKRKXLVGTPYWMA-PEVISRLP--------------------------YGTE- 221
Query: 254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTA 313
                          VD W+LGI+  EM+ G  P+  +   +  R +    P  V     
Sbjct: 222 ---------------VDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDSLPPRVKDLHK 266
Query: 314 LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           ++ +++  L+   V+       A E+  H F K
Sbjct: 267 VSSVLRGFLDLMLVREPSQRATAQELLGHPFLK 299

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 17  LDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           +D+ K   ++LG G  G V  + ++         FALK +             +AR E+ 
Sbjct: 60  IDDYKVTSQVLGLGINGKVLQIFNKRTQEK----FALKXLQDCP---------KARREVE 106
Query: 76  VLSRLSH-PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  R S  P + +++   E      + L        GG+L      + D+ F+       
Sbjct: 107 LHWRASQCPHIVRIVDVYENLYAGRKCLLIVXECLDGGELFSRIQDRGDQAFTEREASEI 166
Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
              I  AI++LH++ IA+RD+KPEN+L    R +  + LTDF  ++      +       
Sbjct: 167 XKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY- 225
Query: 188 NNKFPVLPVTENPKRHRRILTRW 210
              + V P    P+++ +    W
Sbjct: 226 -TPYYVAPEVLGPEKYDKSCDXW 247

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L+ ++L   + +G+G  G VF    RA D T     + +      L AK   E       
Sbjct: 111 LNHEDLVLGEQIGRGNFGEVFSGRLRA-DNTLVAVKSCRETLPPDLKAKFLQE------A 163
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           R+L + SHP + +L+G     + +   +    GGD       +  R+   ++++  + + 
Sbjct: 164 RILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQM-VGDA 222
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              +E+L +    +RDL   N L+ +   + ++DF +SR
Sbjct: 223 AAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSR 261

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 24  KILGKGAMGTVF--LVHDRAADPTARCPFALKVVDK-STLHAKHEAERRARWEIRVLSRL 80
           +ILG+G  G V+  +  +   +   +   A+K   K  TL  K +    A     ++  L
Sbjct: 30  RILGEGFFGEVYEGVYTNHKGE---KINVAVKTCKKDCTLDNKEKFMSEAV----IMKNL 82
Query: 81  SHPFLPKLLGSLETDEFLAWAV-PYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSEIICA 137
            HP + KL+G +E +    W +    P G+L   + R K + +V +   +  Y  +I  A
Sbjct: 83  DHPHIVKLIGIIEEEP--TWIIMELYPYGELGHYLERNKNSLKVLT---LVLYSLQICKA 137
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           + +L ++   +RD+   NIL+     V L DF LSR  ++   + K S+   + P+  ++
Sbjct: 138 MAYLESINCVHRDIAVRNILVASPECVKLGDFGLSR-YIEDEDYYKASV--TRLPIKWMS 194
Query: 198 ENPKRHRRILTR---WLHAL 214
                 RR  T    W+ A+
Sbjct: 195 PESINFRRFTTASDVWMFAV 214

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           R    VGT  +++PE++    +   VD W+LGI+  EM+ G  P+  +   +  + +   
Sbjct: 176 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN 235
Query: 304 TPEFVGQ----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            P  +        +L   + RLL +DP +R      A E+ +H F 
Sbjct: 236 LPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 277

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 8/159 (5%)
Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L+ ++L   + +G+G  G VF    RA +        L  V         + + +   E 
Sbjct: 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADN-------TLVAVKSCRETLPPDLKAKFLQEA 163
Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           R+L + SHP + +L+G     + +   +    GGD       +  R+   ++++  + + 
Sbjct: 164 RILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQM-VGDA 222
Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
              +E+L +    +RDL   N L+ +   + ++DF +SR
Sbjct: 223 AAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSR 261

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +      A     L+  D  TL +        R EI  L++L  
Sbjct: 17  LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS-------YRNEIAYLNKLQQ 69
Query: 83  PF--LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
               + +L     TD+++ + V  C   DLN   + +  +   P   + Y   ++ A+  
Sbjct: 70  HSDKIIRLYDYEITDQYI-YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLEAVHT 126
Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           +H  GI + DLKP N LI   G + L DF ++  +   T 
Sbjct: 127 IHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 165

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 24  KILGKGAMGTVF--LVHDRAADPTARCPFALKVVDK-STLHAKHEAERRARWEIRVLSRL 80
           +ILG+G  G V+  +  +   +   +   A+K   K  TL  K +    A     ++  L
Sbjct: 14  RILGEGFFGEVYEGVYTNHKGE---KINVAVKTCKKDCTLDNKEKFMSEAV----IMKNL 66
Query: 81  SHPFLPKLLGSLETDEFLAWAV-PYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSEIICA 137
            HP + KL+G +E +    W +    P G+L   + R K + +V +   +  Y  +I  A
Sbjct: 67  DHPHIVKLIGIIEEEP--TWIIMELYPYGELGHYLERNKNSLKVLT---LVLYSLQICKA 121
Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           + +L ++   +RD+   NIL+     V L DF LSR  ++   + K S+   + P+  ++
Sbjct: 122 MAYLESINCVHRDIAVRNILVASPECVKLGDFGLSR-YIEDEDYYKASV--TRLPIKWMS 178
Query: 198 ENPKRHRRILTR---WLHAL 214
                 RR  T    W+ A+
Sbjct: 179 PESINFRRFTTASDVWMFAV 198

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 15  LDLDNLKALKI-LGKGAMGTV----FLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
           L  DNL    I LG G  G+V    + +  +  D       A+KV+ + T  A  E   R
Sbjct: 332 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQID------VAIKVLKQGTEKADTEEMMR 385
Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
              E +++ +L +P++ +L+G  +  E L   +    GG L+     + + +   +V   
Sbjct: 386 ---EAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAEL 441
Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            L ++   +++L      +R+L   N+L+    +  ++DF LS+ L
Sbjct: 442 -LHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKAL 486

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 26  LGKGAMGTVFLVHDRAADPTA-RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           LG+GA G VFL       P   +   A+K + +++  A+ + +R A     +L+ L H  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAE----LLTMLQHQH 104
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVF-------SPSVIRF-----YL 131
           + +  G       L     Y   GDLN  LR    D          +P  +         
Sbjct: 105 IVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 164
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           S++   + +L  +   +RDL   N L+ Q   V + DF +SR++
Sbjct: 165 SQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 208

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 18/206 (8%)
Query: 25  ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           +LG+GA G V     +   PT      +  + K     K     R   EI++L    H  
Sbjct: 18  LLGEGAYGVVCSATHK---PTGE----IVAIKKIEPFDKPLFALRTLREIKILKHFKHEN 70
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLNV-LRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           +  +      D F  +   Y     +   L    + ++ S   I++++ + + A++ LH 
Sbjct: 71  IITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHG 130
Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRH 203
             + +RDLKP N+LI  +  + + DF L+R        ++ + +N++    P  +     
Sbjct: 131 SNVIHRDLKPSNLLINSNCDLKVCDFGLAR------IIDESAADNSE----PTGQQSGMV 180
Query: 204 RRILTRWLHALPENKTGLKKTKSARV 229
             + TRW  A     T  K +++  V
Sbjct: 181 EFVATRWYRAPEVMLTSAKYSRAMDV 206

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 116/323 (35%), Gaps = 70/323 (21%)
Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           L+  ++L +G    V+     A D  +   +ALK +    L  + E  R    E+  + +
Sbjct: 30  LRVRRVLAEGGFAFVY----EAQDVGSGREYALKRL----LSNEEEKNRAIIQEVCFMKK 81
Query: 80  LS-HPFLPKL-----LGSLETD----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
           LS HP + +      +G  E+D    EFL      C G  +  L+  ++    S   +  
Sbjct: 82  LSGHPNIVQFCSAASIGKEESDTGQAEFLLL-TELCKGQLVEFLKKMESRGPLSCDTVLK 140
Query: 130 YLSEIICAIEHLHNMG--IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
              +   A++H+H     I +RDLK EN+L+   G + L DF  +  +     +   +  
Sbjct: 141 IFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSA-- 198
Query: 188 NNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS 247
                           RR       AL E +     T   R   +     +F  GE+   
Sbjct: 199 ---------------QRR-------ALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQ-- 234
Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF 307
                                 D WALG + Y + +   PF     K    N     P  
Sbjct: 235 ----------------------DIWALGCILYLLCFRQHPFE-DGAKLRIVNGKYSIPPH 271
Query: 308 VGQRTALTDLIQRLLEKDPVKRL 330
             Q T    LI+ +L+ +P +RL
Sbjct: 272 DTQYTVFHSLIRAMLQVNPEERL 294

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 32/201 (15%)
Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-EIRV 76
           +NL+  K LG GA G V    +  A    +    LKV  K      H  E+ A   E+++
Sbjct: 31  NNLQFGKTLGAGAFGKVV---EATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 87
Query: 77  LSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSV-------- 126
           +S L  H  +  LLG+      +     YC  GDL N LR K  + +  PS+        
Sbjct: 88  MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKA-EAMLGPSLAPGQDPEG 146
Query: 127 -------------IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLS 172
                        +  + S++   +  L +    +RD+   N+L+  +GHV  + DF L+
Sbjct: 147 LDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT-NGHVAKIGDFGLA 205
Query: 173 RNLVKKTAFEKQSLNNNKFPV 193
           R+++  + +  +   N + PV
Sbjct: 206 RDIMNDSNYIVKG--NARLPV 224

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 36  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 88
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   +           Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 89  ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYI 148
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 149 HSANVLHRDLKPSNLLLNTTCDLKICDFGLAR 180

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 28  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 80
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   +           Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 81  ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYI 140
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 141 HSANVLHRDLKPSNLLLNTTCDLKICDFGLAR 172

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 28  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 80
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   +           Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 81  ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYI 140
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 141 HSANVLHRDLKPSNLLLNTTXDLKICDFGLAR 172

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 30  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 82
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   +           Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 83  ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYI 142
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 143 HSANVLHRDLKPSNLLLNTTCDLKICDFGLAR 174

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G+R    + +  Y SPEV+ G  ++ A+D W+LG +  EM  G   F G N  +    ++
Sbjct: 212 GQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIV 271

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G+R    + +  Y SPEV+ G  ++ A+D W+LG +  EM  G   F G N  +    ++
Sbjct: 193 GQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIV 252

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           G+R    + +  Y SPEV+ G  ++ A+D W+LG +  EM  G   F G N  +    ++
Sbjct: 212 GQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIV 271

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 28  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 80
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   +           Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 81  ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYI 140
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 141 HSANVLHRDLKPSNLLLNTTCDLKICDFGLAR 172

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 26  LGKGAMGTVFLVHDRAADPTA-RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           LG+GA G VFL       P   +   A+K + +++  A+ + +R A     +L+ L H  
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAE----LLTMLQHQH 81
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVF-------SPSVIRF-----YL 131
           + +  G       L     Y   GDLN  LR    D          +P  +         
Sbjct: 82  IVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 141
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           S++   + +L  +   +RDL   N L+ Q   V + DF +SR++
Sbjct: 142 SQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 185

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 28  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 80
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   +           Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 81  ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYI 140
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 141 HSANVLHRDLKPSNLLLNTTXDLKIXDFGLAR 172

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS 78
           + K ++++G G  G VF    R    T         V K   +   +AER    E++ L+
Sbjct: 12  DFKEIELIGSGGFGQVFKAKHRIDGKT--------YVIKRVKYNNEKAER----EVKALA 59
Query: 79  RLSHPFLPKLLGSLETDEF----------------LAWAVPYCPGGDLNVLRYKQNDRVF 122
           +L H  +    G  +  ++                L   + +C  G L     K+     
Sbjct: 60  KLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKL 119
Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              +      +I   ++++H+  +  RDLKP NI +  +  V + DF L  +L
Sbjct: 120 DKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSL 172

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 26  LGKGAMGTVFLVHDRAADPTA-RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF 84
           LG+GA G VFL       P   +   A+K + +++  A+ + +R    E  +L+ L H  
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR----EAELLTMLQHQH 75
Query: 85  LPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVF-------SPSVIRF-----YL 131
           + +  G       L     Y   GDLN  LR    D          +P  +         
Sbjct: 76  IVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 135
Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           S++   + +L  +   +RDL   N L+ Q   V + DF +SR++
Sbjct: 136 SQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 179

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V      A D   +   A+K +  S    +   +R  R EI++L R  H
Sbjct: 48  LSYIGEGAYGMVC----SAYDNVNKVRVAIKKI--SPFEHQTYCQRTLR-EIKILLRFRH 100
Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ-NDRVFSPSVIRFYLSEIICAIEHL 141
             +  +   +           Y     +    YK    +  S   I ++L +I+  ++++
Sbjct: 101 ENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYI 160
Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           H+  + +RDLKP N+L+  +  + + DF L+R
Sbjct: 161 HSANVLHRDLKPSNLLLNTTCDLKICDFGLAR 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	4e-80
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	5e-58
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-52
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-51
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-50
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-50
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-46
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	6e-44
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-45
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-45
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	7e-39
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	5e-45
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-42
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-44
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-41
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-44
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	7e-42
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-43
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-41
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-42
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-39
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-42
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	5e-38
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	3e-42
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	5e-37
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-41
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-37
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-41
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	8e-41
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	4e-41
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-39
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	6e-41
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	7e-41
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	9e-41
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	9e-36
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	9e-41
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	2e-39
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-40
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	7e-39
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-40
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-37
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	3e-39
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-38
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-39
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-38
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	8e-39
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-37
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-38
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-37
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	4e-38
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-34
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-34
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-20
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	7e-34
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	8e-34
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-29
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-33
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-19
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-33
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-28
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-33
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-13
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-32
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-31
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-14
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-30
2a19_B	284	Interferon-induced, double-stranded RNA-activated	7e-16
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-29
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-16
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-29
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-29
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-17
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-28
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	6e-16
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-27
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	9e-23
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-27
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-16
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-27
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-16
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-27
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	9e-16
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	6e-26
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-15
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	3e-25
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-19
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-25
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	8e-18
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	3e-24
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	3e-20
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-24
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-17
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	6e-24
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	8e-21
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	8e-24
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-19
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	9e-24
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-21
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	9e-24
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	8e-20
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-23
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-18
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-23
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-14
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-23
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-20
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-23
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	4e-19
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-23
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-21
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-23
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	9e-21
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-23
3bhy_A	283	Death-associated protein kinase 3; death associate	7e-22
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-23
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-21
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-23
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-20
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-23
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-18
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	4e-23
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-15
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	4e-23
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	9e-13
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-23
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	5e-11
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-23
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-13
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	5e-23
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-21
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	5e-23
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	3e-14
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	9e-23
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	4e-19
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-22
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-18
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-22
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-11
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-22
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-18
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-22
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-19
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-22
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	5e-22
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-22
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	9e-08
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	5e-22
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-19
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-22
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-17
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	9e-22
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-21
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-18
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-21
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-13
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-21
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-14
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-21
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-13
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-21
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	4e-13
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-21
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-13
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-21
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-08
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-21
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	5e-20
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-21
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	6e-16
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	9e-21
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-20
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-07
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-20
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-20
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-20
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-11
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	4e-20
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	5e-20
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	7e-14
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-20
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	9e-10
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-20
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-15
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	5e-20
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	1e-17
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	6e-20
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-15
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-19
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-15
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	3e-19
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	6e-15
3aln_A	327	Dual specificity mitogen-activated protein kinase;	4e-19
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-05
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-19
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	9e-16
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	5e-19
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-08
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-19
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-09
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-18
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-18
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-08
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-18
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-05
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	6e-18
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-18
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	7e-18
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	8e-18
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-10
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	8e-18
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-15
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	8e-18
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-06
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-17
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-17
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-08
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-17
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	4e-17
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	7e-10
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-16
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-16
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-16
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-04
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	9e-16
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-15
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	5e-10
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-15
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-15
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	5e-09
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-15
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-15
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-15
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-15
3uqc_A	286	Probable conserved transmembrane protein; structur	4e-15
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-04
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-15
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-15
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	7e-15
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-15
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-14
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-14
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-10
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-14
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-14
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-14
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-13
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-13
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	1e-13
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-13
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-13
3o0g_A	292	Cell division protein kinase 5; kinase activator c	3e-13
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	3e-13
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	5e-13
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	5e-13
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	5e-13
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	6e-13
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-12
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	2e-12
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-12
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-12
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-12
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-12
3rp9_A	458	Mitogen-activated protein kinase; structural genom	3e-12
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	4e-12
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	6e-12
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	7e-12
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	7e-12
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	8e-12
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-11
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-11
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-11
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	3e-11
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-11
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	6e-11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	6e-11
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	7e-11
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	8e-11
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	9e-04
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	8e-11
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-10
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	3e-10
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	3e-10
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	9e-10
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	9e-10
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	1e-09
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-09
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-09
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-09
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-09
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	2e-09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-09
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-09
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-09
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	7e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-09
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	2e-08
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-08
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-08
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-08
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	3e-08
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	3e-08
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	3e-08
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	2e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	3e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	4e-08
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	4e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-08
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-08
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	5e-08
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-08
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	6e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	7e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-08
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	9e-08
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	9e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	9e-08
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-07
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-07
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-07
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-07
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-07
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-07
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-07
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-07
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-07
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	7e-07
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-06
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-04

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  255 bits (654), Expect = 4e-80
 Identities = 92/366 (25%), Positives = 153/366 (41%), Gaps = 77/366 (21%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  D     ++LG+G  G VF    +A        +A K ++K  L  +   +  A  E 
Sbjct: 182 MGEDWFLDFRVLGRGGFGEVFACQMKATGKL----YACKKLNKKRLKKRKGYQG-AMVEK 236

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLS 132
           ++L+++   F+  L  + ET   L   +    GGD+  ++    +++  F      FY +
Sbjct: 237 KILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTA 296

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           +I+  +EHLH   I YRDLKPEN+L+   G+V ++D  L+                    
Sbjct: 297 QIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAV------------------- 337

Query: 193 VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                                  E K G  KTK                      + GT 
Sbjct: 338 -----------------------ELKAGQTKTK---------------------GYAGTP 353

Query: 253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK----ETFRNVLMKTPEF- 307
            +++PE++ G+ ++F+VD++ALG+  YEM+    PFR +  K    E  + VL +   + 
Sbjct: 354 GFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYP 413

Query: 308 VGQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWD-LLTDVLRPPFIPSR 365
                A  D  + LL+KDP KRLG+       ++ H  F+ + W  L   +L PPF+P  
Sbjct: 414 DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDS 473

Query: 366 EENDLT 371
                 
Sbjct: 474 RTVYAK 479

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  191 bits (486), Expect = 5e-58
 Identities = 69/356 (19%), Positives = 125/356 (35%), Gaps = 85/356 (23%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           + +LG+GA G V    +          +A+K +  +      E       E+ +L+ L+H
Sbjct: 11  IAVLGQGAFGQVVKARNA----LDSRYYAIKKIRHT-----EEKLSTILSEVMLLASLNH 61

Query: 83  PFLPKLLGSLETDEFLAWAVP-------------YCPGGDLNVLRYKQNDRVFSPSVIRF 129
            ++ +   +          +              YC  G L        +          
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYD-LIHSENLNQQRDEYWR 120

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN 189
              +I+ A+ ++H+ GI +RDLKP NI I +S +V + DF L++N+ +     K    N 
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQN- 179

Query: 190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV 249
                                                              + +   S +
Sbjct: 180 ------------------------------------------------LPGSSDNLTSAI 191

Query: 250 GTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV 308
           GT  YV+ EV+ G GH    +D ++LGI+ +EM+Y      G  R    + +   + EF 
Sbjct: 192 GTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYP--FSTGMERVNILKKLRSVSIEFP 249

Query: 309 GQ-----RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD-LLTDVLR 358
                        +I+ L++ DP KR     GA  +    +      D ++ + L+
Sbjct: 250 PDFDDNKMKVEKKIIRLLIDHDPNKRP----GARTLLNSGWLPVKHQDEVIKEALK 301

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  175 bits (447), Expect = 2e-52
 Identities = 72/327 (22%), Positives = 125/327 (38%), Gaps = 80/327 (24%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
            +LGKG+   V+               A+K++DK  ++ K    +R + E+++  +L HP
Sbjct: 17  NLLGKGSFAGVYRAESIHTGLE----VAIKMIDKKAMY-KAGMVQRVQNEVKIHCQLKHP 71

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIEHLH 142
            + +L    E   ++   +  C  G++N  RY K   + FS +  R ++ +II  + +LH
Sbjct: 72  SILELYNYFEDSNYVYLVLEMCHNGEMN--RYLKNRVKPFSENEARHFMHQIITGMLYLH 129

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
           + GI +RDL   N+L+ ++ ++ + DF L+                              
Sbjct: 130 SHGILHRDLTLSNLLLTRNMNIKIADFGLA------------------------------ 159

Query: 203 HRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG 262
                        +       T                         GT  Y+SPE+   
Sbjct: 160 ----------TQLKMPHEKHYT-----------------------LCGTPNYISPEIATR 186

Query: 263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM---KTPEFVGQRTALTDLIQ 319
             H    D W+LG + Y +L G  PF     K T   V++   + P F+       DLI 
Sbjct: 187 SAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLS--IEAKDLIH 244

Query: 320 RLLEKDPVKRLGYLRGACEIKEHVFFK 346
           +LL ++P  RL        + +H F  
Sbjct: 245 QLLRRNPADRL----SLSSVLDHPFMS 267

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  173 bits (441), Expect = 2e-51
 Identities = 76/347 (21%), Positives = 119/347 (34%), Gaps = 80/347 (23%)

Query: 3   ATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA 62
           A   P+    P          + LGKG     F      +D   +  FA K+V KS L  
Sbjct: 1   AKEIPEVLVDPR-SRRRYVRGRFLGKGGFAKCFE----ISDADTKEVFAGKIVPKSLL-L 54

Query: 63  KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF 122
           K     +   EI +   L+H  +    G  E ++F+   +  C    L      +  +  
Sbjct: 55  KPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLL--ELHKRRKAL 112

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           +    R+YL +I+   ++LH   + +RDLK  N+ + +   V + DF L+          
Sbjct: 113 TEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA---------- 162

Query: 183 KQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG 242
                                            E     KK                   
Sbjct: 163 ------------------------------TKVEYDGERKKV------------------ 174

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
                  GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  +  
Sbjct: 175 -----LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKK 229

Query: 303 ---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
                P+ +        LIQ++L+ DP  R        E+    FF 
Sbjct: 230 NEYSIPKHIN--PVAASLIQKMLQTDPTARP----TINELLNDEFFT 270

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  172 bits (438), Expect = 2e-50
 Identities = 73/348 (20%), Positives = 115/348 (33%), Gaps = 79/348 (22%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
                                 + LGKG     F      +D   +  FA K+V KS L 
Sbjct: 25  PPAKEIPEVLVDPRSRRRYVRGRFLGKGGFAKCFE----ISDADTKEVFAGKIVPKSLL- 79

Query: 62  AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV 121
            K     +   EI +   L+H  +    G  E ++F+   +  C    L      +  + 
Sbjct: 80  LKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLL--ELHKRRKA 137

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
            +    R+YL +I+   ++LH   + +RDLK  N+ + +   V + DF L+         
Sbjct: 138 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA--------- 188

Query: 182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN 241
                                             E     KK                  
Sbjct: 189 -------------------------------TKVEYDGERKKV----------------- 200

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
                   GT  Y++PEV+   GH F VD W++G + Y +L G  PF     KET+  + 
Sbjct: 201 ------LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIK 254

Query: 302 M---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
                 P+ +        LIQ++L+ DP  R        E+    FF 
Sbjct: 255 KNEYSIPKHIN--PVAASLIQKMLQTDPTARP----TINELLNDEFFT 296

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  170 bits (434), Expect = 2e-50
 Identities = 67/346 (19%), Positives = 123/346 (35%), Gaps = 81/346 (23%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L + + ++ LG+G  G VF   ++  D    C +A+K +    L  +  A  +   E++ 
Sbjct: 4   LTDFEPIQCLGRGGFGVVFEAKNKVDD----CNYAIKRIR---LPNRELAREKVMREVKA 56

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVP------------YCPGGDL-NVLRYKQNDRVFS 123
           L++L HP + +   +           P             C   +L + +  +       
Sbjct: 57  LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERE 116

Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
            SV      +I  A+E LH+ G+ +RDLKP NI       V + DF L   +        
Sbjct: 117 RSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAM-------- 168

Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE 243
                                           +     +   +   +             
Sbjct: 169 --------------------------------DQDEEEQTVLTPMPAYARH--------- 187

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
                VGT+ Y+SPE + G+ +   VD ++LG++ +E+LY   PF  +  +      +  
Sbjct: 188 --TGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRN 242

Query: 304 ---TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
               P F  +      ++Q +L   P++R      A  I E+  F+
Sbjct: 243 LKFPPLFTQKYPCEYVMVQDMLSPSPMERP----EAINIIENAVFE 284

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  161 bits (410), Expect = 1e-46
 Identities = 65/182 (35%), Positives = 104/182 (57%), Gaps = 10/182 (5%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
            A PPPQP+       ++ K  KILG+G+  TV L  + A   T+R  +A+K+++K  + 
Sbjct: 17  HAQPPPQPRK---KRPEDFKFGKILGEGSFSTVVLARELA---TSR-EYAIKILEKRHII 69

Query: 62  AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV 121
            +++       E  V+SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    
Sbjct: 70  KENKVPY-VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGS 126

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
           F  +  RFY +EI+ A+E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++ L  ++  
Sbjct: 127 FDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 186

Query: 182 EK 183
            +
Sbjct: 187 AR 188

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  154 bits (391), Expect = 6e-44
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 4/128 (3%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
               R+NSFVGT +YVSPE++       + D WALG + Y+++ G  PFR  N    F+ 
Sbjct: 184 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQK 243

Query: 300 VLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGVRWDLLTDV 356
           ++    +F         DL+++LL  D  KRLG   + G   +K H FF+ V W+ L   
Sbjct: 244 IIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQ 303

Query: 357 LRPPFIPS 364
             PP + +
Sbjct: 304 -TPPKLTA 310

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  160 bits (405), Expect = 2e-45
 Identities = 50/344 (14%), Positives = 94/344 (27%), Gaps = 61/344 (17%)

Query: 5   PPPQPQTTPSLDLDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLHAK 63
           P  +P+T   L    +    +LG+GA   V+        D   +  F LKV   +     
Sbjct: 52  PAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEF 111

Query: 64  HEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN---VLRYKQNDR 120
           +   +     +  L         K   +                G L     L     ++
Sbjct: 112 YIGTQ----LMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEK 167

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           V    ++  +   ++  IE +H+  I + D+KP+N ++         + DLS   +    
Sbjct: 168 VMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAG-LALID 226

Query: 181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD 240
                                                  G            S   + F 
Sbjct: 227 L--------------------------------------GQ-----------SIDMKLFP 237

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
            G    +   T  +   E++      + +D++ +    Y ML+GT         E     
Sbjct: 238 KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEG 297

Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
           L +            +    +L       L  L    +  + VF
Sbjct: 298 LFRRLP---HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVF 338

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  159 bits (404), Expect = 3e-45
 Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 3/137 (2%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           ++ ++   +++F GT EY++PEV+    ++  VDWW LG + YEMLYG  PF  +N  E 
Sbjct: 188 ENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEM 247

Query: 297 FRNVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD 355
           + N+L K  +     T +   L++ LL+KD  KRLG      EIK HVFF  + WD L +
Sbjct: 248 YDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLIN 307

Query: 356 V-LRPPFIPS-REENDL 370
             + PPF P+    NDL
Sbjct: 308 KKITPPFNPNVSGPNDL 324

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  142 bits (360), Expect = 7e-39
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
                  P + P     +   LK++GKG+ G V L   +A +      +A+KV+ K  + 
Sbjct: 22  SQQINLGPSSNPHAKPSDFHFLKVIGKGSFGKVLLARHKAEE----VFYAVKVLQKKAIL 77

Query: 62  AKHEAERRARWEIRVLSR-LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
            K E +     E  VL + + HPFL  L  S +T + L + + Y  GG+L    + Q +R
Sbjct: 78  KKKEEKH-IMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGEL--FYHLQRER 134

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            F     RFY +EI  A+ +LH++ I YRDLKPENIL+   GH+ LTDF L 
Sbjct: 135 CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLC 186

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  157 bits (400), Expect = 5e-45
 Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           +S D+ +++ SF GT EY++PEVV   GH  + DWW+ G+L +EML GT PF+GK+RKET
Sbjct: 175 ESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKET 234

Query: 297 FRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWD-LL 353
              +L                L++ L +++P  RLG    G  EIK H FF  + W+ L 
Sbjct: 235 MTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLY 294

Query: 354 TDVLRPPFIPS 364
              + PPF P+
Sbjct: 295 RREIHPPFKPA 305

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  151 bits (383), Expect = 1e-42
 Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%)

Query: 9   PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
            +     D    + LK+LG+G+ G VFLV   +     +  +A+KV+ K+TL  +     
Sbjct: 15  KEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQL-YAMKVLKKATLKVRDRVRT 73

Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           +   E  +L  ++HPF+ KL  + +T+  L   + +  GGDL        + +F+   ++
Sbjct: 74  KM--ERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVK 129

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           FYL+E+  A++HLH++GI YRDLKPENIL+ + GH+ LTDF LS
Sbjct: 130 FYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  156 bits (396), Expect = 2e-44
 Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 7/133 (5%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           +S  +G  +++F GT EY++PE++   GH  AVDWW+LG L Y+ML G  PF G+NRK+T
Sbjct: 170 ESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKT 229

Query: 297 FRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWD- 351
              +L      P ++ Q     DL+++LL+++   RLG     A E++ H FF+ + W+ 
Sbjct: 230 IDKILKCKLNLPPYLTQEAR--DLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEE 287

Query: 352 LLTDVLRPPFIPS 364
           LL   + PPF P 
Sbjct: 288 LLARKVEPPFKPL 300

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  148 bits (377), Expect = 1e-41
 Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA 66
              +    +  +  + L++LGKG  G VF V       T +  FA+KV+ K+ +    + 
Sbjct: 6   SVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKI-FAMKVLKKAMIVRNAKD 64

Query: 67  ERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSV 126
               + E  +L  + HPF+  L+ + +T   L   + Y  GG+L      + + +F    
Sbjct: 65  TAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGEL--FMQLEREGIFMEDT 122

Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
             FYL+EI  A+ HLH  GI YRDLKPENI++   GHV LTDF L 
Sbjct: 123 ACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLC 168

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  154 bits (393), Expect = 4e-44
 Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 7/167 (4%)

Query: 13  PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           P   L + + L+ LG G+ G V L+  R         +A+KV+ K  +    + E     
Sbjct: 1   PKYSLQDFQILRTLGTGSFGRVHLIRSRHNGR----YYAMKVLKKEIVVRLKQVEH-TND 55

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           E  +LS ++HPF+ ++ G+ +  + +   + Y  GG+L      +  + F   V +FY +
Sbjct: 56  ERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGEL--FSLLRKSQRFPNPVAKFYAA 113

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           E+  A+E+LH+  I YRDLKPENIL+ ++GH+ +TDF  ++ +   T
Sbjct: 114 EVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT 160

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  149 bits (378), Expect = 7e-42
 Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
             + + +  GT +Y++PEVV    +  ++DWW+ GIL YEML G TPF   N  +T+  +
Sbjct: 156 VPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKI 215

Query: 301 LMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWD-LLTDVL 357
           L     F       + DL+ RL+ +D  +RLG L+ G  ++K H +FK V W+ LL+  +
Sbjct: 216 LNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNI 275

Query: 358 RPPFIP 363
             P+ P
Sbjct: 276 ETPYEP 281

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  153 bits (388), Expect = 4e-43
 Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 7/178 (3%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
           +     +  +  +  LD    +K LG G+ G V LV  + +       +A+K++DK  + 
Sbjct: 25  DFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNH----YAMKILDKQKVV 80

Query: 62  AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV 121
              + E     E R+L  ++ PFL KL  S + +  L   + Y  GG++    + +    
Sbjct: 81  KLKQIEH-TLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM--FSHLRRIGR 137

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           FS    RFY ++I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++ +  +T
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT 195

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  148 bits (376), Expect = 3e-41
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 3/126 (2%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
              R+ +  GT E ++PE++   G+  AVDWWALG+L YEM  G  PF      + +  +
Sbjct: 191 VKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI 250

Query: 301 LMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWD-LLTDVL 357
           +     F    +  L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +
Sbjct: 251 VSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV 310

Query: 358 RPPFIP 363
             PFIP
Sbjct: 311 EAPFIP 316

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  151 bits (385), Expect = 1e-42
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 3/127 (2%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +G    +F GT EY++PEV+  + +  AVDWW LG++ YEM+ G  PF  ++ +  F  +
Sbjct: 158 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI 217

Query: 301 LMKTPEFVGQRTALT-DLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWDLLTD-VL 357
           LM+   F    +     L+  LL+KDP +RLG     A E+ EH FF  + W  +    L
Sbjct: 218 LMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKL 277

Query: 358 RPPFIPS 364
            PPF P 
Sbjct: 278 LPPFKPQ 284

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  143 bits (362), Expect = 2e-39
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 7/158 (4%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           + +++   LK+LGKG  G V LV ++A        +A+K++ K  + AK E       E 
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKATG----RYYAMKILRKEVIIAKDEVAH-TVTES 56

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           RVL    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI
Sbjct: 57  RVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEI 114

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           + A+E+LH+  + YRD+K EN+++ + GH+ +TDF L 
Sbjct: 115 VSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLC 152

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  151 bits (384), Expect = 2e-42
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 22/172 (12%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +G  + +F GT +Y++PE++    +  +VDWWA G+L YEML G  PF G++  E F+++
Sbjct: 174 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSI 233

Query: 301 LMKT---PEFVGQRTALTDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWDLLTD- 355
           +      P+ + +      + + L+ K P KRLG    G  +IKEH FF+ + W+ L   
Sbjct: 234 MEHNVAYPKSMSKEAV--AICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERK 291

Query: 356 VLRPPFIPSREENDLTEKAMSGGGVDIREYF--ENLRAPPPSMPPSPLPSPS 405
            ++PP+ P     +              E F     R PP   PP      +
Sbjct: 292 EIQPPYKPKACGRNA-------------ENFDRFFTRHPPVLTPPDQEVIRN 330

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  139 bits (353), Expect = 5e-38
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
             +          + L +   L +LGKG+ G V L   +  D      +A+K++ K  + 
Sbjct: 4   TVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTD----ELYAVKILKKDVVI 59

Query: 62  AKHEAERRARWEIRVLSR-LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
              + E     E RVL+     PFL +L    +T + L + + Y  GGDL  + + Q   
Sbjct: 60  QDDDVEC-TMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVG 116

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            F      FY +EI   +  L + GI YRDLK +N+++   GH+ + DF + 
Sbjct: 117 RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 168

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  152 bits (385), Expect = 3e-42
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 6   PPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE 65
           PP       ++ D+ + L+ +GKG+ G V +V            +A+K ++K     ++E
Sbjct: 3   PPVFDENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKM----YAMKYMNKQKCVERNE 58

Query: 66  AERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYK-QNDRVFSP 124
                + E++++  L HPFL  L  S + +E +   V    GGDL   RY  Q +  F  
Sbjct: 59  VRNVFK-ELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDL---RYHLQQNVHFKE 114

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             ++ ++ E++ A+++L N  I +RD+KP+NIL+ + GHV +TDF+++  L ++T
Sbjct: 115 ETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  137 bits (347), Expect = 5e-37
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 239 FDNGERSNSFVGTEEYVSPEVV---RGDGHEFAVDWWALGILTYEMLYGTTPFRGK---N 292
                +  +  GT+ Y++PE+    +G G+ FAVDWW+LG+  YE+L G  P+  +   +
Sbjct: 165 LPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS 224

Query: 293 RKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD 351
            KE           +       +  L+++LLE +P +R        +++   +   + WD
Sbjct: 225 SKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFS---QLSDVQNFPYMNDINWD 281

Query: 352 -LLTDVLRPPFIPSR 365
            +    L P FIP++
Sbjct: 282 AVFQKRLIPGFIPNK 296

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  149 bits (378), Expect = 1e-41
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 4/128 (3%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           NG  + +F GT +Y++PE+++   +  AVDWWA+G+L YEML G  PF  +N  + F  +
Sbjct: 177 NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAI 236

Query: 301 LMKTPEFVGQRTAL-TDLIQRLLEKDPVKRLGYLR--GACEIKEHVFFKGVRWD-LLTDV 356
           L     +        T +++  + K+P  RLG L   G   I  H FFK + W  L    
Sbjct: 237 LNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQ 296

Query: 357 LRPPFIPS 364
           + PPF P 
Sbjct: 297 IEPPFRPR 304

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  138 bits (351), Expect = 1e-37
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
           +        ++  L +DN + +++LGKG+ G V L   +         +A+KV+ K  + 
Sbjct: 7   KEGNGIGVNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKETG----DLYAVKVLKKDVIL 62

Query: 62  AKHEAERRARWEIRVLSR-LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
              + E     E R+LS   +HPFL +L    +T + L + + +  GGDL  + + Q  R
Sbjct: 63  QDDDVEC-TMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDL--MFHIQKSR 119

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            F  +  RFY +EII A+  LH+ GI YRDLK +N+L+   GH  L DF + 
Sbjct: 120 RFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMC 171

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  148 bits (375), Expect = 3e-41
 Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 4/172 (2%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
           E            + ++N + LK+LG GA G VFLV   +   T +  +A+KV+ K+T+ 
Sbjct: 38  ELRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKL-YAMKVLKKATIV 96

Query: 62  AKHEAERRARWEIRVLSRLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
            K +     R E +VL  +   PFL  L  + +T+  L   + Y  GG+L    +     
Sbjct: 97  QKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGEL--FTHLSQRE 154

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            F+   ++ Y+ EI+ A+EHLH +GI YRD+K ENIL+  +GHV LTDF LS
Sbjct: 155 RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  147 bits (373), Expect = 8e-41
 Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 9/135 (6%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGD--GHEFAVDWWALGILTYEMLYGTTPF----RGKN 292
            D  ER+  F GT EY++P++VRG   GH+ AVDWW+LG+L YE+L G +PF       +
Sbjct: 211 ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS 270

Query: 293 RKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRW 350
           + E  R +L   P +         DLIQRLL KDP KRLG   R A EIKEH+FF+ + W
Sbjct: 271 QAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINW 330

Query: 351 DLLTD-VLRPPFIPS 364
           D L    +  PF P 
Sbjct: 331 DDLAAKKVPAPFKPV 345

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  150 bits (380), Expect = 4e-41
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 3   ATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA 62
           A P         L  ++ + LK++G+GA G V +V  + AD      FA+K+++K  +  
Sbjct: 59  AKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKV----FAMKILNKWEMLK 114

Query: 63  KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF 122
           + E     R E  VL      ++  L  + + D  L   + Y  GGDL  L  K  DR  
Sbjct: 115 RAETAC-FREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDR-L 172

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
              + RFYL+E++ AI+ +H +   +RD+KP+NIL+  +GH+ L DF     L++
Sbjct: 173 PEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME 227

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  145 bits (367), Expect = 2e-39
 Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 29/188 (15%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           D   +S+  VGT +Y+SPE+++        +    DWW+LG+  YEMLYG TPF  ++  
Sbjct: 228 DGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV 287

Query: 295 ETFRNVL-----MKTPEFVGQ-RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           ET+  ++      + P  V        DLI+RL+      RLG   G  + K+H FF G+
Sbjct: 288 ETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLI-CSREHRLGQ-NGIEDFKKHPFFSGI 345

Query: 349 RWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIR---EYFENLRAPPPSMPPSPLPSPS 405
            WD + +    P+IP                 D        + L+      PP+      
Sbjct: 346 DWDNIRNC-EAPYIPEVS-----------SPTDTSNFDVDDDCLKNSETMPPPTHTAFSG 393

Query: 406 -HRSFAEY 412
            H  F  +
Sbjct: 394 HHLPFVGF 401

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  149 bits (377), Expect = 6e-41
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 27/186 (14%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDG----HEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           +   R ++ VGT +Y+SPEV++  G    +    DWW++G+  YEML G TPF   +   
Sbjct: 221 EGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG 280

Query: 296 TFRNVLM-----KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW 350
           T+  ++        P+         +LI   L  D   RLG   G  EIK H+FFK  +W
Sbjct: 281 TYSKIMNHKNSLTFPDDNDISKEAKNLICAFL-TDREVRLGR-NGVEEIKRHLFFKNDQW 338

Query: 351 DLLTD-VLRPPFIPSREENDLTEKAMSGGGVDIR---EYFENLRAPPPSMPPSPLPSPSH 406
              T      P +P                +D     +  E+      + P       + 
Sbjct: 339 AWETLRDTVAPVVPDLS-----------SDIDTSNFDDLEEDKG-EEETFPIPKAFVGNQ 386

Query: 407 RSFAEY 412
             F  +
Sbjct: 387 LPFVGF 392

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  148 bits (376), Expect = 7e-41
 Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 5   PPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH 64
                     +  ++ + +K++G+GA G V LV  ++        +A+K++ K  +  + 
Sbjct: 56  DTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKV----YAMKLLSKFEMIKRS 111

Query: 65  EAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSP 124
           ++      E  +++  + P++ +L  + + D +L   + Y PGGDL  +    N      
Sbjct: 112 DSAF-FWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDL--VNLMSNYD-VPE 167

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
              RFY +E++ A++ +H+MG  +RD+KP+N+L+ +SGH+ L DF     + K+
Sbjct: 168 KWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE 221

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  152 bits (385), Expect = 9e-41
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
            +G  + +F GT +Y++PE++    +  +VDWWA G+L YEML G  PF G++  E F++
Sbjct: 494 WDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQS 553

Query: 300 VLMKTPEFVGQRTAL-TDLIQRLLEKDPVKRLGY-LRGACEIKEHVFFKGVRWDLLTD-V 356
           ++     +    +     + + L+ K P KRLG    G  +IKEH FF+ + W+ L    
Sbjct: 554 IMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKE 613

Query: 357 LRPPFIPSREENDLTEKAMSGGGVDIREYF--ENLRAPPPSMPPSPLPSPS 405
           ++PP+ P     +              E F     R PP   PP      +
Sbjct: 614 IQPPYKPKASGRNA-------------ENFDRFFTRHPPVLTPPDQEVIRN 651

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  138 bits (348), Expect = 9e-36
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
             +          + L +   L +LGKG+ G V L   +  D      +A+K++ K  + 
Sbjct: 325 TISKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTD----ELYAVKILKKDVVI 380

Query: 62  AKHEAERRARWEIRVLSR-LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
              + E     E RVL+     PFL +L    +T + L + + Y  GGDL  + + Q   
Sbjct: 381 QDDDVEC-TMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVG 437

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            F      FY +EI   +  L + GI YRDLK +N+++   GH+ + DF + 
Sbjct: 438 RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 489

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  146 bits (372), Expect = 9e-41
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 21/170 (12%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
              ++N+F GT +Y++PE++ G  +  +VDWW+ G+L YEML G +PF G++ +E F ++
Sbjct: 171 GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSI 230

Query: 301 LMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD-LLTDVLR 358
            M  P +         DL+ +L  ++P KRLG      +I++H  F+ + W+ L    + 
Sbjct: 231 RMDNPFYPRWLEKEAKDLLVKLFVREPEKRLG---VRGDIRQHPLFREINWEELERKEID 287

Query: 359 PPFIPS-REENDLTEKAMSGGGVDIREYF--ENLRAPPPSMPPSPLPSPS 405
           PPF P  +   D                F  E L   P           S
Sbjct: 288 PPFRPKVKSPFDC-------------SNFDKEFLNEKPRLSFADRALINS 324

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  143 bits (362), Expect = 2e-39
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 5   PPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH 64
              +P     L +++    K+LGKG+ G VFL   +  +      FA+K + K  +    
Sbjct: 4   NKERPSLQIKLKIEDFILHKMLGKGSFGKVFLAEFKKTN----QFFAIKALKKDVVLMDD 59

Query: 65  EAERRARWEIRVLSR-LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFS 123
           + E     E RVLS    HPFL  +  + +T E L + + Y  GGDL  + + Q+   F 
Sbjct: 60  DVEC-TMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDL--MYHIQSCHKFD 116

Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            S   FY +EII  ++ LH+ GI YRDLK +NIL+ + GH+ + DF + 
Sbjct: 117 LSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMC 165

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  148 bits (375), Expect = 1e-40
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L  D+ + LK++G+GA   V +V  +         +A+K+++K  +  + E     R E 
Sbjct: 58  LQRDDFEILKVIGRGAFSEVAVVKMKQTGQV----YAMKIMNKWDMLKRGEVSC-FREER 112

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            VL      ++ +L  + + + +L   + Y  GGDL  L  K  +R     + RFYL+EI
Sbjct: 113 DVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGER-IPAEMARFYLAEI 171

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
           + AI+ +H +G  +RD+KP+NIL+ + GH+ L DF     L   
Sbjct: 172 VMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRAD 215

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  143 bits (362), Expect = 7e-39
 Identities = 57/187 (30%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDG-------HEFAVDWWALGILTYEMLYGTTPFRGKN 292
           D   RS   VGT +Y+SPE+++  G       +    DWWALG+  YEM YG TPF   +
Sbjct: 215 DGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS 274

Query: 293 RKETFRNVLMKTPEFVGQRTALT------DLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             ET+  ++                    D IQRLL   P  RLG   GA + + H FF 
Sbjct: 275 TAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLL-CPPETRLGR-GGAGDFRTHPFFF 332

Query: 347 GVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIR---EYFENLRAPPPSMPPSPLPS 403
           G+ WD L D   PPF P  E           G  D        + L     S     L  
Sbjct: 333 GLDWDGLRDS-VPPFTPDFE-----------GATDTCNFDLVEDGLT-AMVSGGGETLSD 379

Query: 404 PSHRSFA 410
               +  
Sbjct: 380 IREGAPL 386

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  148 bits (375), Expect = 2e-40
 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
            +G    +F GT EY++PEV+  + +  AVDWW LG++ YEM+ G  PF  ++ ++ F  
Sbjct: 301 KDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFEL 360

Query: 300 VLMKTPEFVGQRTA-LTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWD-LLTDV 356
           +LM+   F          L+  LL+KDP +RLG     A EI +H FF G+ W  +    
Sbjct: 361 ILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKK 420

Query: 357 LRPPFIP 363
           L PPF P
Sbjct: 421 LSPPFKP 427

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  140 bits (354), Expect = 2e-37
 Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 8/172 (4%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
           E       +    + ++  + LK+LGKG  G V LV ++A        +A+K++ K  + 
Sbjct: 132 EEMEVSLAKPKHRVTMNEFEYLKLLGKGTFGKVILVKEKATGRY----YAMKILKKEVIV 187

Query: 62  AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV 121
           AK E       E RVL    HPFL  L  S +T + L + + Y  GG+L    +   +RV
Sbjct: 188 AKDEVAH-TLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGEL--FFHLSRERV 244

Query: 122 FSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           FS    RFY +EI+ A+++LH+   + YRDLK EN+++ + GH+ +TDF L 
Sbjct: 245 FSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLC 296

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  142 bits (361), Expect = 3e-39
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 14/144 (9%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF---------RGK 291
            G+ +++F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF            
Sbjct: 163 PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQN 222

Query: 292 NRKETFRNVLMKTPEFVGQRTAL-TDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGV 348
                F+ +L K        +     +++  L KDP +RLG     G  +I+ H FF+ V
Sbjct: 223 TEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV 282

Query: 349 RWDLLTD-VLRPPFIPS-REENDL 370
            WD++    + PPF P+   E  L
Sbjct: 283 DWDMMEQKQVVPPFKPNISGEFGL 306

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  140 bits (355), Expect = 2e-38
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 12  TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
              L L +   L+++G+G+   V LV  +  D      +A+KVV K  ++   + +   +
Sbjct: 3   MDPLGLQDFDLLRVIGRGSYAKVLLVRLKKTD----RIYAMKVVKKELVNDDEDIDW-VQ 57

Query: 72  WEIRVLSR-LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
            E  V  +  +HPFL  L    +T+  L + + Y  GGDL  + + Q  R       RFY
Sbjct: 58  TEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDL--MFHMQRQRKLPEEHARFY 115

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
            +EI  A+ +LH  GI YRDLK +N+L+   GH+ LTD+ + 
Sbjct: 116 SAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 157

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  143 bits (362), Expect = 5e-39
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 4   TPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK 63
                 + + SL L +   L+++G+G+   V LV  +  D      +A++VV K  ++  
Sbjct: 38  NTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTD----RIYAMRVVKKELVNDD 93

Query: 64  HEAERRARWEIRVLSR-LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF 122
            + +   + E  V  +  +HPFL  L    +T+  L + + Y  GGDL  + + Q  R  
Sbjct: 94  EDIDW-VQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDL--MFHMQRQRKL 150

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
                RFY +EI  A+ +LH  GI YRDLK +N+L+   GH+ LTD+ + 
Sbjct: 151 PEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 200

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  140 bits (356), Expect = 5e-38
 Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 18/147 (12%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF---------RG 290
             G+ +++F GT  Y++PE++RG+ + F+VDWWALG+L +EM+ G +PF           
Sbjct: 205 RPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ 264

Query: 291 KNRKETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFF 345
                 F+ +L K    P  +  + A   +++  L KDP +RLG     G  +I+ H FF
Sbjct: 265 NTEDYLFQVILEKQIRIPRSLSVKAA--SVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 322

Query: 346 KGVRWDLLTD-VLRPPFIPS-REENDL 370
           + V WD++    + PPF P+   E  L
Sbjct: 323 RNVDWDMMEQKQVVPPFKPNISGEFGL 349

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  147 bits (372), Expect = 8e-39
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 19/178 (10%)

Query: 242 GERSNSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFRG---KNRKETF 297
            ++ ++ VGT  Y++PEV+ +G  ++ + DW++LG + +++L G +PFR    K++ E  
Sbjct: 344 KKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID 403

Query: 298 RNVLMKTPEFVGQRTA-LTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWD-LLT 354
           R  L    E     +  L  L++ LL++D  +RLG L RGA E+KE  FF+ + W  +  
Sbjct: 404 RMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFL 463

Query: 355 DVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPSHRSFAEY 412
               PP IP R E +           DI   F+             L       +  +
Sbjct: 464 QKYPPPLIPPRGEVNAA------DAFDI-GSFD-----EEDTKGIKLLDSDQELYRNF 509

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  142 bits (360), Expect = 2e-37
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 10/176 (5%)

Query: 8   QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE 67
             +    L +++    +I+G+G  G V+              +A+K +DK  +  K   E
Sbjct: 179 NVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKM----YAMKCLDKKRIKMKQG-E 233

Query: 68  RRARWEIRVLSRLS---HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSP 124
             A  E  +LS +S    PF+  +  +  T + L++ +    GGDL    +     VFS 
Sbjct: 234 TLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL--HYHLSQHGVFSE 291

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           + +RFY +EII  +EH+HN  + YRDLKP NIL+ + GHV ++D  L+ +  KK  
Sbjct: 292 ADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP 347

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  144 bits (365), Expect = 3e-38
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 7/133 (5%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK---- 294
              G+     VGT  Y++PEVV+ + + F+ DWWALG L YEM+ G +PF+ + +K    
Sbjct: 336 VPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKRE 395

Query: 295 ETFRNVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWD- 351
           E  R V     E+  + +     L  +LL KDP +RLG     A E+KEH  FK + +  
Sbjct: 396 EVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKR 455

Query: 352 LLTDVLRPPFIPS 364
           L   +L PPF P 
Sbjct: 456 LGAGMLEPPFKPD 468

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  142 bits (359), Expect = 1e-37
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 8   QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE 67
           +      +  +  +  ++LGKG  G V     RA        +A K ++K  +  +    
Sbjct: 174 KWLERQPVTKNTFRQYRVLGKGGFGEVCACQVRATGKM----YACKKLEKKRIKKRKGEA 229

Query: 68  RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI 127
             A  E ++L +++  F+  L  + ET + L   +    GGDL    Y      F  +  
Sbjct: 230 M-ALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARA 288

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
            FY +EI C +E LH   I YRDLKPENIL+   GH+ ++D  L+ ++ + 
Sbjct: 289 VFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  139 bits (352), Expect = 4e-38
 Identities = 61/348 (17%), Positives = 111/348 (31%), Gaps = 78/348 (22%)

Query: 11  TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA 70
            T  L    L+  ++L +G    V+   D  +       +ALK +  +         +  
Sbjct: 21  QTVELGELRLRVRRVLAEGGFAFVYEAQDVGS----GREYALKRLLSNEEEKNRAIIQ-- 74

Query: 71  RWEIRVLSRLS-HPFLPKLLGS-------LETDEFLAWAVP-YCPGGDLNVLRYKQNDRV 121
             E+  + +LS HP + +   +        +T +     +   C G  +  L+  ++   
Sbjct: 75  --EVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGP 132

Query: 122 FSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
            S   +     +   A++H+H     I +RDLK EN+L+   G + L DF  +  +    
Sbjct: 133 LSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYP 192

Query: 180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF 239
                                                                S   Q  
Sbjct: 193 ---------------------------------------------------DYSWSAQRR 201

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHE---FAVDWWALGILTYEMLYGTTPFRGKNRKET 296
              E   +   T  Y +PE++    +       D WALG + Y + +   PF    +   
Sbjct: 202 ALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR- 260

Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
             N     P    Q T    LI+ +L+ +P +RL       E+   + 
Sbjct: 261 IVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERL----SIAEVVHQLQ 304

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  130 bits (327), Expect = 2e-34
 Identities = 51/291 (17%), Positives = 92/291 (31%), Gaps = 64/291 (21%)

Query: 63  KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRV 121
                     +IR +   S       L       +L   +  C   +L + +  + +   
Sbjct: 101 SPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED 160

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
               V      +I  A+E LH+ G+ +RDLKP NI       V + DF L   +      
Sbjct: 161 REHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAM------ 214

Query: 182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN 241
                                             +     +   +               
Sbjct: 215 ----------------------------------DQDEEEQTVLT-----------PMPA 229

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFR-GKNRKETFRNV 300
                  VGT+ Y+SPE + G+ +   VD ++LG++ +E+LY    F     R     + 
Sbjct: 230 YATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLY---SFSTQMERVRIITD- 285

Query: 301 LMK---TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
           +        F  +      ++Q +L   P +R      A +I E+  F+ +
Sbjct: 286 VRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERP----EATDIIENAIFENL 332

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  128 bits (324), Expect = 3e-34
 Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 9/173 (5%)

Query: 4   TPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK 63
           +P   P    S    + + L  LG G+ G VF V  +         +A+K         K
Sbjct: 43  SPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSK----EDGRLYAVKRSMSPFRGPK 98

Query: 64  HEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF 122
             A + A  E+    ++  HP   +L  + E    L      C G  L     +      
Sbjct: 99  DRARKLA--EVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQ-QHCEAWGASL 154

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             + +  YL + + A+ HLH+ G+ + D+KP NI +   G   L DF L   L
Sbjct: 155 PEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL 207

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTT-PFRGKNRKETFR 298
                     G   Y++PE+++G  +  A D ++LG+   E+      P  G+  ++  +
Sbjct: 208 GTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQ 266

Query: 299 NVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             L   PEF    +  L  ++  +LE DP  R      A  +      +
Sbjct: 267 GYLP--PEFTAGLSSELRSVLVMMLEPDPKLRA----TAEALLALPVLR 309

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  129 bits (327), Expect = 7e-34
 Identities = 78/347 (22%), Positives = 127/347 (36%), Gaps = 89/347 (25%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           KILG G+ GTV            R P A+K +         +       EI++L+    H
Sbjct: 21  KILGYGSSGTVVFQGSF----QGR-PVAVKRMLID----FCDIALM---EIKLLTESDDH 68

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVL-----RYKQNDRVFSPSVIRFYLSEIICA 137
           P + +   S  TD FL  A+  C   +L  L        +N ++         L +I   
Sbjct: 69  PNVIRYYCSETTDRFLYIALELC-NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASG 127

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA-FEKQSLNNNKFPVLPV 196
           + HLH++ I +RDLKP+NIL+  S   T      + NL    + F               
Sbjct: 128 VAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDF--------------- 172

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                                  GL K        +   Q SF      N+  GT  + +
Sbjct: 173 -----------------------GLCKK-------LDSGQSSFRT--NLNNPSGTSGWRA 200

Query: 257 PEVVRGDGHE-------FAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVLMKTPEFV 308
           PE++    +         ++D +++G + Y +L  G  PF  K  +E+  N++       
Sbjct: 201 PELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES--NIIRGIFSLD 258

Query: 309 GQRTAL--------TDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
             +           TDLI ++++ DP+KR      A ++  H  F  
Sbjct: 259 EMKCLHDRSLIAEATDLISQMIDHDPLKRP----TAMKVLRHPLFWP 301

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  126 bits (319), Expect = 8e-34
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 7/163 (4%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
                  +D+    + LGKG  G V+L  ++          ALKV+ KS L  K   E +
Sbjct: 6   MPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQ---NKF-IMALKVLFKSQLE-KEGVEHQ 60

Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
            R EI + S L HP + ++       + +   + + P G+L   +  Q    F       
Sbjct: 61  LRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGEL--YKELQKHGRFDEQRSAT 118

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           ++ E+  A+ + H   + +RD+KPEN+L+   G + + DF  S
Sbjct: 119 FMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWS 161

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  113 bits (285), Expect = 5e-29
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 14/128 (10%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
             R  +  GT +Y+ PE++ G  H+  VD W  G+L YE L G  PF   +  ET R ++
Sbjct: 166 SLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIV 225

Query: 302 ---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLR 358
              +K P F+       DLI +LL   P +RL        + EH + K       +  + 
Sbjct: 226 NVDLKFPPFLS--DGSKDLISKLLRYHPPQRL----PLKGVMEHPWVK-----ANSRRVL 274

Query: 359 PPFIPSRE 366
           PP   S +
Sbjct: 275 PPVYQSTQ 282

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  126 bits (319), Expect = 3e-33
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 9   PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
            +      ++    L+ +G+G+ G   LV            + +K ++ S + +K   ER
Sbjct: 15  TENLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQ----YVIKEINISRMSSK---ER 67

Query: 69  R-ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI 127
             +R E+ VL+ + HP + +   S E +  L   + YC GGDL      Q   +F    I
Sbjct: 68  EESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQI 127

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
             +  +I  A++H+H+  I +RD+K +NI + + G V L DF ++R L       +
Sbjct: 128 LDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELAR 183

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 11/175 (6%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
             E + + +GT  Y+SPE+     +    D WALG + YE+      F   + K     +
Sbjct: 178 TVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKI 237

Query: 301 LMKTPEFVGQR--TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLR 358
           +  +   V       L  L+ +L +++P  R         I E  F        L+  L 
Sbjct: 238 ISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRP----SVNSILEKGFIAKRIEKFLSPQLI 293

Query: 359 PPFIPSREENDLTEKAM-----SGGGVDIREYFENLRAPPPSMPPSPLPSPSHRS 408
                 +  +    + +     + G   I          P +    PL    +  
Sbjct: 294 AEEFCLKTFSKFGSQPIPAKRPASGQNSISVMPAQKITKPAAKYGIPLAYKKYGD 348

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  124 bits (314), Expect = 4e-33
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L  ++    +     ALKV+ K+ L  K   E + R E+ +
Sbjct: 8   LEDFEIGRPLGKGKFGNVYLAREKQ---SKF-ILALKVLFKAQLE-KAGVEHQLRREVEI 62

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G +   R  Q    F       Y++E+  
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELAN 120

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  111 bits (281), Expect = 2e-28
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
             R     GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++ + 
Sbjct: 161 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220

Query: 302 ---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
                 P+FV       DLI RLL+ +P +R        E+ EH +  
Sbjct: 221 RVEFTFPDFVT--EGARDLISRLLKHNPSQRP----MLREVLEHPWIT 262

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  125 bits (315), Expect = 5e-33
 Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
           +     +P    +  L N +  K +G+G    V+               ALK V    L 
Sbjct: 17  QPQKALRPDMGYN-TLANFRIEKKIGRGQFSEVYRAACLLDGVP----VALKKVQIFDL- 70

Query: 62  AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVL--RYKQND 119
              +A      EI +L +L+HP + K   S   D  L   +     GDL+ +   +K+  
Sbjct: 71  MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQK 130

Query: 120 RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           R+     +  Y  ++  A+EH+H+  + +RD+KP N+ I  +G V L D  L R    KT
Sbjct: 131 RLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 190

Query: 180 AFEK 183
               
Sbjct: 191 TAAH 194

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK--NRKETFRNVL-M 302
           +S VGT  Y+SPE +  +G+ F  D W+LG L YEM    +PF G   N     + +   
Sbjct: 194 HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC 253

Query: 303 KTPEFVGQR--TALTDLIQRLLEKDPVKR 329
             P          L  L+   +  DP KR
Sbjct: 254 DYPPLPSDHYSEELRQLVNMCINPDPEKR 282

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  124 bits (314), Expect = 1e-32
 Identities = 64/349 (18%), Positives = 117/349 (33%), Gaps = 71/349 (20%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRVLSRLSH 82
             +G+G+ G V +  +       R   A+K+++K+ +     +   R + E+R++ +L H
Sbjct: 32  GAIGQGSYGVVRVAIENQT----RAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHH 87

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + +L    E ++++   +  C GG                      L + +       
Sbjct: 88  PNIARLYEVYEDEQYICLVMELCHGGH---------------------LLDKLNVFIDDS 126

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
               A   +K +     +     +                               E    
Sbjct: 127 TGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQ---------------REKLIS 171

Query: 203 H--RRILT--RWLHAL--------PENKTGLKKTKSARVSP----VSRRQQSFDNGERS- 245
           +  R+I +   +LH          PEN       KS  +      +S+     +NGE   
Sbjct: 172 NIMRQIFSALHYLHNQGICHRDIKPENFL-FSTNKSFEIKLVDFGLSKEFYKLNNGEYYG 230

Query: 246 -NSFVGTEEYVSPEVVRGDGHE--FAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
             +  GT  +V+PEV+           D W+ G+L + +L G  PF G N  +T   VL 
Sbjct: 231 MTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLN 290

Query: 303 KTPEFVGQR-----TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           K   F             DL+  LL ++  +R      A    +H +  
Sbjct: 291 KKLCFENPNYNVLSPLARDLLSNLLNRNVDERF----DAMRALQHPWIS 335

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  120 bits (302), Expect = 4e-31
 Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 14/184 (7%)

Query: 9   PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
                 +D  +   ++ LG+G    V LV            +ALK +       + EA+R
Sbjct: 20  QGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHF----YALKRILCHEQQDREEAQR 75

Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV----PYCPGGDL--NVLRYKQNDRVF 122
               E  +    +HP + +L+     +           P+   G L   + R K      
Sbjct: 76  ----EADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL 131

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           +   I + L  I   +E +H  G A+RDLKP NIL+   G   L D              
Sbjct: 132 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS 191

Query: 183 KQSL 186
           +Q+L
Sbjct: 192 RQAL 195

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 226 SARVSPVS-RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHE---FAVDWWALGILTYEM 281
           S   + +     +     +   +   T  Y +PE+     H       D W+LG + Y M
Sbjct: 180 SMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAM 239

Query: 282 LYGTTPFRGKNRK-ETFRNVLM---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGAC 337
           ++G  P+    +K ++    +      P+     +AL  L+  ++  DP +R        
Sbjct: 240 MFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRP----HIP 295

Query: 338 EIKEHVFF 345
            +   +  
Sbjct: 296 LLLSQLEA 303

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  118 bits (297), Expect = 1e-30
 Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 28/182 (15%)

Query: 10  QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
            T       + K ++++G G  G VF    R         + +K V  +          +
Sbjct: 3   HTVDKRFGMDFKEIELIGSGGFGQVFKAKHR----IDGKTYVIKRVKYN--------NEK 50

Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP----------------YCPGGDLNVL 113
           A  E++ L++L H  +    G  +  ++                      +C  G L   
Sbjct: 51  AEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQW 110

Query: 114 RYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             K+        +      +I   ++++H+  +  RDLKP NI +  +  V + DF L  
Sbjct: 111 IEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVT 170

Query: 174 NL 175
           +L
Sbjct: 171 SL 172

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKET 296
           S  N  +     GT  Y+SPE +    +   VD +ALG++  E+L+   T F        
Sbjct: 171 SLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTD 230

Query: 297 FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            R+      +   +      L+Q+LL K P  R        EI   +   
Sbjct: 231 LRDG--IISDIFDK--KEKTLLQKLLSKKPEDRP----NTSEILRTLTVW 272

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  115 bits (289), Expect = 2e-29
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
            ILG+GA   VF    +    T    FA+KV +  +     + + R   E  VL +L+H 
Sbjct: 15  DILGQGATANVFRGRHKK---TGD-LFAIKVFNNISFLRPVDVQMR---EFEVLKKLNHK 67

Query: 84  FLPKLLGSLETDE----FLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAI 138
            + KL    E        L   + +CP G L  VL    N      S     L +++  +
Sbjct: 68  NIVKLFAIEEETTTRHKVLI--MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGM 125

Query: 139 EHLHNMGIAYRDLKPENILIRQS----GHVTLTDFDLSRNL 175
            HL   GI +R++KP NI+            LTDF  +R L
Sbjct: 126 NHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL 166

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 48/153 (31%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEF--------AVDWWALGILTYEMLYGTTPFR- 289
            ++ E+  S  GTEEY+ P++                 VD W++G+  Y    G+ PFR 
Sbjct: 166 LEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRP 225

Query: 290 ---GKNRKETFRNVLMKTPEFV--------------------------GQRTALTDLIQR 320
               +  KE    ++   P                             G +  LT ++  
Sbjct: 226 FEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLAN 285

Query: 321 LLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
           +LE D  K      G  +            D+L
Sbjct: 286 ILEADQEKCW----GFDQFFAET------SDIL 308

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  113 bits (286), Expect = 4e-29
 Identities = 52/333 (15%), Positives = 105/333 (31%), Gaps = 65/333 (19%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS- 81
           L+ +G G  G+VF    R       C +A+K   K    +  E  + A  E+   + L  
Sbjct: 16  LEKIGSGEFGSVFKCVKR----LDGCIYAIKRSKKPLAGSVDE--QNALREVYAHAVLGQ 69

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVL--RYKQNDRVFSPSVIRFYLSEIICAIE 139
           H  + +   +   D+ +     YC GG L        +    F  + ++  L ++   + 
Sbjct: 70  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLR 129

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTEN 199
           ++H+M + + D+                          K +        N F    ++  
Sbjct: 130 YIHSMSLVHMDI--------------------------KPS--------NIF----ISRT 151

Query: 200 PKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV 259
              +             NK   K      V+ +S                G   +++ EV
Sbjct: 152 SIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP----------QVEEGDSRFLANEV 201

Query: 260 VRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT-ALTDL 317
           ++ +  H    D +AL +            R  ++    R    + P      +   T+L
Sbjct: 202 LQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQ--GRLPRIPQVLSQEFTEL 259

Query: 318 IQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW 350
           ++ ++  DP +R      A  + +H        
Sbjct: 260 LKVMIHPDPERRP----SAMALVKHSVLLSASR 288

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  113 bits (285), Expect = 5e-29
 Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
            ++ + L  +G G+ G    +  ++           K +D  ++      ++    E+ +
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKI----LVWKELDYGSMTEA--EKQMLVSEVNL 58

Query: 77  LSRLSHPFLPKLLGS--LETDEFLAWAVPYCPGGDLNVL--RYKQNDRVFSPSVIRFYLS 132
           L  L HP + +        T+  L   + YC GGDL  +  +  +  +      +   ++
Sbjct: 59  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 118

Query: 133 EIICAIEHLHNMG-----IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
           ++  A++  H        + +RDLKP N+ +    +V L DF L+R L   T+F
Sbjct: 119 QLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF 172

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
           +   + +FVGT  Y+SPE +    +    D W+LG L YE+     PF   ++KE    +
Sbjct: 169 DTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKI 228

Query: 301 LMKTPEFVGQR--TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
                  +  R    L ++I R+L      R        EI E+    
Sbjct: 229 REGKFRRIPYRYSDELNEIITRMLNLKDYHRP----SVEEILENPLIL 272

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  114 bits (288), Expect = 1e-28
 Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
            ILG+GA   VF    +    T    FA+KV +  +     + + R   E  VL +L+H 
Sbjct: 15  DILGQGATANVFRGRHK---KTGD-LFAIKVFNNISFLRPVDVQMR---EFEVLKKLNHK 67

Query: 84  FLPKLLGSLETDE----FLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAI 138
            + KL    E        L   + +CP G L  VL    N      S     L +++  +
Sbjct: 68  NIVKLFAIEEETTTRHKVLI--MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGM 125

Query: 139 EHLHNMGIAYRDLKPENILIRQS----GHVTLTDFDLSRNLVKKTAFE 182
            HL   GI +R++KP NI+            LTDF  +R L     F 
Sbjct: 126 NHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFV 173

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 38/132 (28%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEF--------AVDWWALGILTYEMLYGTTPFR- 289
            ++ E+  S  GTEEY+ P++                 VD W++G+  Y    G+ PFR 
Sbjct: 166 LEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRP 225

Query: 290 ---GKNRKETFRNVLMKTPEFV--------------------------GQRTALTDLIQR 320
               +  KE    ++   P                             G +  LT ++  
Sbjct: 226 FEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLAN 285

Query: 321 LLEKDPVKRLGY 332
           +LE D  K  G+
Sbjct: 286 ILEADQEKCWGF 297

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  110 bits (278), Expect = 1e-27
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 28/191 (14%)

Query: 3   ATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLV-HDRAADPTARCPFALKVVDKSTLH 61
                +        +++ + ++ L +G    + L   D          +ALK  +KS L 
Sbjct: 16  LIYLNKYVKEKDKYINDYRIIRTLNQGKFNKIILCEKDNKF-------YALKKYEKSLLE 68

Query: 62  AKHEAERRARW-------------EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGG 108
            K +  +                 E+++++ + + +     G +   + +     Y    
Sbjct: 69  KKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMEND 128

Query: 109 DL-NVLRY-----KQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQS 161
            +     Y     K         VI+  +  ++ +  ++HN   I +RD+KP NIL+ ++
Sbjct: 129 SILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKN 188

Query: 162 GHVTLTDFDLS 172
           G V L+DF  S
Sbjct: 189 GRVKLSDFGES 199

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 97.5 bits (243), Expect = 9e-23
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDG--HEFAVDWWALGILTYEMLYGTTPFRGK-NRKE 295
             + +      GT E++ PE    +   +   VD W+LGI  Y M Y   PF  K +  E
Sbjct: 202 MVDKKI-KGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVE 260

Query: 296 TFRNVL---MKTPEFVGQRTALT-----------------DLIQRLLEKDPVKRLGYLRG 335
            F N+    ++ P                           D ++  L K+P +R+     
Sbjct: 261 LFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERI----T 316

Query: 336 ACEIKEHVFFKGVRWDLLTDVLRP 359
           + +  +H +      + L +  + 
Sbjct: 317 SEDALKHEWLADTNIEDLREFSKE 340

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  110 bits (276), Expect = 2e-27
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +          +A+K V+       ++     R EI  L++L  
Sbjct: 33  LKQIGSGGSSKVFQVLNEKKQI-----YAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQ 85

Query: 83  PFLP--KLLGSLETDEFLAWAVPY----CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
                 +L     TD+++     Y    C   DLN   + +  +   P   + Y   ++ 
Sbjct: 86  HSDKIIRLYDYEITDQYI-----YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLE 138

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           A+  +H  GI + DLKP N LI   G + L DF ++  +   T
Sbjct: 139 AVHTIHQHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDT 180

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 23/132 (17%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHE-----------FAVDWWALGILTYE 280
           ++ + Q        +S VGT  Y+ PE ++                   D W+LG + Y 
Sbjct: 172 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 231

Query: 281 MLYGTTPFRGKN------RKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLR 334
           M YG TPF+               N  ++ P+   +   L D+++  L++DP +R+    
Sbjct: 232 MTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEK--DLQDVLKCCLKRDPKQRI---- 285

Query: 335 GACEIKEHVFFK 346
              E+  H + +
Sbjct: 286 SIPELLAHPYVQ 297

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  110 bits (277), Expect = 2e-27
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +          +A+K V+       ++     R EI  L++L  
Sbjct: 14  LKQIGSGGSSKVFQVLNEKKQI-----YAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQ 66

Query: 83  PFLP--KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
                 +L     TD+++ + V  C   DLN   + +  +   P   + Y   ++ A+  
Sbjct: 67  HSDKIIRLYDYEITDQYI-YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLEAVHT 123

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           +H  GI + DLKP N LI   G + L DF ++  +   T
Sbjct: 124 IHQHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDT 161

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 23/132 (17%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHE-----------FAVDWWALGILTYE 280
           ++ + Q        +S VGT  Y+ PE ++                   D W+LG + Y 
Sbjct: 153 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 212

Query: 281 MLYGTTPFRGKN------RKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLR 334
           M YG TPF+               N  ++ P+   +   L D+++  L++DP +R+    
Sbjct: 213 MTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEK--DLQDVLKCCLKRDPKQRI---- 266

Query: 335 GACEIKEHVFFK 346
              E+  H + +
Sbjct: 267 SIPELLAHPYVQ 278

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  112 bits (282), Expect = 4e-27
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 17/179 (9%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA 66
            +  + P+      +  + LG G  G V     +    T     A+K   +       E 
Sbjct: 3   GRSPSLPTQTCGPWEMKERLGTGGFGYVLRWIHQ---DTGE-QVAIKQCRQELSPKNRER 58

Query: 67  ERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP------YCPGGDL-NVLRYKQND 119
                 EI+++ +L+HP +       +  + LA          YC GGDL   L   +N 
Sbjct: 59  WCL---EIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENC 115

Query: 120 RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT---LTDFDLSRNL 175
                  IR  LS+I  A+ +LH   I +RDLKPENI+++         + D   ++ L
Sbjct: 116 CGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL 174

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 78.2 bits (192), Expect = 9e-16
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 29/133 (21%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            D GE    FVGT +Y++PE++    +   VD+W+ G L +E + G  PF    +   + 
Sbjct: 174 LDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWH 233

Query: 299 NVLMKTPEFV-------------------------GQRTALTDLIQRLLEKDPVKRLGYL 333
             + +                                   L   +Q +L     +R    
Sbjct: 234 GKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDP 293

Query: 334 RGACEIKEHVFFK 346
               +      F+
Sbjct: 294 ----QNPNVGCFQ 302

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  107 bits (268), Expect = 6e-26
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 21/163 (12%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +G G    VF V +          +A+K V+       ++     R EI  L++L  
Sbjct: 61  LKQIGSGGSSKVFQVLNEKKQI-----YAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQ 113

Query: 83  PFLP--KLLGSLETDEFLAWAVPY----CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
                 +L     TD+++     Y    C   DLN   + +  +   P   + Y   ++ 
Sbjct: 114 HSDKIIRLYDYEITDQYI-----YMVMECGNIDLN--SWLKKKKSIDPWERKSYWKNMLE 166

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
           A+  +H  GI + DLKP N LI   G + L DF ++  +   T
Sbjct: 167 AVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIANQMQPDT 208

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 23/132 (17%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHE-----------FAVDWWALGILTYE 280
           ++ + Q        +S VG   Y+ PE ++                   D W+LG + Y 
Sbjct: 200 IANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 259

Query: 281 MLYGTTPFRGKN------RKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLR 334
           M YG TPF+               N  ++ P+   +   L D+++  L++DP +R+    
Sbjct: 260 MTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEK--DLQDVLKCCLKRDPKQRI---- 313

Query: 335 GACEIKEHVFFK 346
              E+  H + +
Sbjct: 314 SIPELLAHPYVQ 325

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  105 bits (265), Expect = 3e-25
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LGKG+ G V L  D+          A+KV+ K  +  K + E   R E+++L +L HP
Sbjct: 32  RVLGKGSFGEVILCKDKITG----QECAVKVISKRQVKQKTDKESLLR-EVQLLKQLDHP 86

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICAI 138
            + KL    E   +         GG+L        D +     FS       + +++  I
Sbjct: 87  NIMKLYEFFEDKGYFYLVGEVYTGGELF-------DEIISRKRFSEVDAARIIRQVLSGI 139

Query: 139 EHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
            ++H   I +RDLKPEN+L+    +  ++ + DF LS 
Sbjct: 140 TYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLST 177

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           F+  ++    +GT  Y++PEV+ G  ++   D W+ G++ Y +L G  PF G N  +  +
Sbjct: 179 FEASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILK 237

Query: 299 NVLMKTPEFVGQRTALT-----DLIQRLLEKDPVKRL 330
            V      F   +         DLI+++L   P  R+
Sbjct: 238 KVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRI 274

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  104 bits (261), Expect = 4e-25
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEIRVLSRLSH 82
           +++GKG    V    +R    T +  FA+K+VD +   +         + E  +   L H
Sbjct: 30  EVIGKGPFSVVRRCINRE---TGQ-QFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH 85

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
           P + +LL +  +D  L     +  G DL   +++      V+S +V   Y+ +I+ A+ +
Sbjct: 86  PHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRY 145

Query: 141 LHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSRNLVK 177
            H+  I +RD+KP  +L+     S  V L  F ++  L +
Sbjct: 146 CHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGE 185

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 83.1 bits (206), Expect = 8e-18
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            ++G  +   VGT  +++PEVV+ + +   VD W  G++ + +L G  PF G   +  F 
Sbjct: 184 GESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK-ERLFE 242

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
            ++    +   +       +A  DL++R+L  DP +R+       E   H + K 
Sbjct: 243 GIIKGKYKMNPRQWSHISESA-KDLVRRMLMLDPAERI----TVYEALNHPWLKE 292

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  100 bits (251), Expect = 3e-24
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 26/162 (16%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           + LG GA G V LV +R++         +K ++K       E       EI VL  L HP
Sbjct: 28  RKLGSGAFGDVHLVEERSSG----LERVIKTINKDRSQVPMEQIEA---EIEVLKSLDHP 80

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE---------I 134
            + K+    E    +   +  C GG+L        +R+ S       LSE         +
Sbjct: 81  NIIKIFEVFEDYHNMYIVMETCEGGELL-------ERIVSAQARGKALSEGYVAELMKQM 133

Query: 135 ICAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
           + A+ + H+  + ++DLKPENIL +       + + DF L+ 
Sbjct: 134 MNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE 175

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 88.8 bits (221), Expect = 3e-20
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           F + E S +  GT  Y++PEV + D   F  D W+ G++ Y +L G  PF G + +E  +
Sbjct: 177 FKSDEHSTNAAGTALYMAPEVFKRD-VTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQ 235

Query: 299 NVLMKTPEFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
               K P +  +   LT    DL++++L KDP +R      A ++  H +FK
Sbjct: 236 KATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRP----SAAQVLHHEWFK 283

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  101 bits (253), Expect = 4e-24
 Identities = 37/205 (18%), Positives = 57/205 (27%), Gaps = 38/205 (18%)

Query: 2   EATPPPQPQTTPSL---DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS 58
              P     T  SL       LK ++ L  G    VFLV D          FALKV    
Sbjct: 43  TVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVER----LEDFALKVFTMG 98

Query: 59  TLHAKHEAERRARWEIRVLSRLSHPFLPKLLG--------------------SLETDEFL 98
             +++ E ER         +RL      +                        L   +  
Sbjct: 99  AENSRSELERLHE-ATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDD 157

Query: 99  AWAVPYC-----PGGDLNVL-----RYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAY 148
                Y         DL +L                  +    +++I    +L + G+ +
Sbjct: 158 YAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVH 217

Query: 149 RDLKPENILIRQSGHVTLTDFDLSR 173
               P+N+ I   G + L D     
Sbjct: 218 GHFTPDNLFIMPDGRLMLGDVSALW 242

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 82.8 bits (204), Expect = 1e-17
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGDG--HEFAVDWWALGILTYEMLYGTTPFRGKN--R 293
            +  G R  +      Y   E +         A++ W LG+  Y +     PF       
Sbjct: 241 LWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGI 300

Query: 294 KETFRNVLMKTPEFVGQRT--------ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
           K +++   ++ P                +  LI R L  D  +RL       E  E   F
Sbjct: 301 KGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRL----LPLEAMETPEF 356

Query: 346 KGVRWDL 352
             ++ ++
Sbjct: 357 LQLQNEI 363

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  101 bits (253), Expect = 6e-24
 Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 30/173 (17%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RWEIRVLSRLS 81
           + LG G    V    +++   T    +A K + K    A      R     E+ +L ++ 
Sbjct: 18  EELGSGQFAIVKKCREKS---TGLE-YAAKFIKKRQSRASRRGVCREEIEREVSILRQVL 73

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE-------- 133
           HP +  L    E    +   +    GG+L        D +      +  LSE        
Sbjct: 74  HPNIITLHDVYENRTDVVLILELVSGGELF-------DFL----AQKESLSEEEATSFIK 122

Query: 134 -IICAIEHLHNMGIAYRDLKPENILIR----QSGHVTLTDFDLSRNLVKKTAF 181
            I+  + +LH   IA+ DLKPENI++        H+ L DF L+  +     F
Sbjct: 123 QILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEF 175

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 92.0 bits (229), Expect = 8e-21
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 228

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           N+   + +F  +        A  D I++LL K+  KRL
Sbjct: 229 NITAVSYDFDEEFFSQTSELAK-DFIRKLLVKETRKRL 265

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  102 bits (255), Expect = 8e-24
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
            +LGKG+ G V    DR      +  +A+KV++K++   K++       E+ +L +L HP
Sbjct: 28  CMLGKGSFGEVLKCKDRIT----QQEYAVKVINKASA--KNKDTSTILREVELLKKLDHP 81

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICAI 138
            + KL   LE             GG+L        D +     FS       + ++   I
Sbjct: 82  NIMKLFEILEDSSSFYIVGELYTGGELF-------DEIIKRKRFSEHDAARIIKQVFSGI 134

Query: 139 EHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
            ++H   I +RDLKPENIL+    +   + + DF LS 
Sbjct: 135 TYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           F    +    +GT  Y++PEV+RG  ++   D W+ G++ Y +L GT PF GKN  +  +
Sbjct: 174 FQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILK 232

Query: 299 NVLMKTPEFVGQRTALT-----DLIQRLLEKDPVKRL 330
            V      F   +         DLI+++L   P  R+
Sbjct: 233 RVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRI 269

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 99.6 bits (249), Expect = 9e-24
 Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 30/173 (17%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RWEIRVLSRLS 81
           + LG G    V    +++   T    +A K + K    A      R     E+ +L ++ 
Sbjct: 18  EELGSGQFAIVKKCREKS---TGLE-YAAKFIKKRQSRASRRGVSREEIEREVSILRQVL 73

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE-------- 133
           H  +  L    E    +   +    GG+L        D +      +  LSE        
Sbjct: 74  HHNVITLHDVYENRTDVVLILELVSGGELF-------DFL----AQKESLSEEEATSFIK 122

Query: 134 -IICAIEHLHNMGIAYRDLKPENILIRQ----SGHVTLTDFDLSRNLVKKTAF 181
            I+  + +LH   IA+ DLKPENI++        H+ L DF L+  +     F
Sbjct: 123 QILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEF 175

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 91.9 bits (229), Expect = 5e-21
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            ++G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 228

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           N+   + +F  +        A  D I++LL K+  KRL
Sbjct: 229 NITSVSYDFDEEFFSHTSELAK-DFIRKLLVKETRKRL 265

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  102 bits (255), Expect = 9e-24
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 21/158 (13%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K LG GA G V L  D+          A+K++ K+++     +  +   E+ VL  L HP
Sbjct: 43  KKLGSGAYGEVLLCRDKVTH----VERAIKIIRKTSV--STSSNSKLLEEVAVLKLLDHP 96

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICAI 138
            + KL    E        +    GG+L        D +     F+       + +++  +
Sbjct: 97  NIMKLYDFFEDKRNYYLVMECYKGGELF-------DEIIHRMKFNEVDAAVIIKQVLSGV 149

Query: 139 EHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
            +LH   I +RDLKPEN+L+    +   + + DF LS 
Sbjct: 150 TYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSA 187

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           F+N ++    +GT  Y++PEV+R   ++   D W++G++ + +L G  PF G+  +E  R
Sbjct: 189 FENQKKMKERLGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILR 247

Query: 299 NVLMKTPEFVGQRTALT-----DLIQRLLEKDPVKRL 330
            V      F             DLI+++L+ D  +R+
Sbjct: 248 KVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRI 284

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 98.8 bits (247), Expect = 1e-23
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
            +LGKG+ G V    DR    T +  +A+KV++K++   K++       E+ +L +L HP
Sbjct: 28  CMLGKGSFGEVLKCKDRI---TQQ-EYAVKVINKASA--KNKDTSTILREVELLKKLDHP 81

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICAI 138
            + KL   LE             GG+L        D +     FS       + ++   I
Sbjct: 82  NIMKLFEILEDSSSFYIVGELYTGGELF-------DEIIKRKRFSEHDAARIIKQVFSGI 134

Query: 139 EHLHNMGIAYRDLKPENILIRQSG---HVTLTDFDLSR 173
            ++H   I +RDLKPENIL+        + + DF LS 
Sbjct: 135 TYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 83.4 bits (207), Expect = 3e-18
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           F    +    +GT  Y++PEV+RG  ++   D W+ G++ Y +L GT PF GKN  +  +
Sbjct: 174 FQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILK 232

Query: 299 NVLMKTPEFVGQR------TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
            V      F   +       A  DLI+++L   P  R+     A +  EH + + 
Sbjct: 233 RVETGKYAFDLPQWRTISDDAK-DLIRKMLTFHPSLRI----TATQCLEHPWIQK 282

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  100 bits (252), Expect = 1e-23
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 27/186 (14%)

Query: 1   MEATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL 60
            + T   Q     +L  D     K LG GA G V L  +R    T +   A++++ K   
Sbjct: 119 FDLTVDDQSVYPKAL-RDEYIMSKTLGSGACGEVKLAFERK---TCK-KVAIRIISKRKF 173

Query: 61  HAKHEAER----RARWEIRVLSRLSHPFLPKLLGSLETDE-FLAWAVPYCPGGDLNVLRY 115
                 E         EI +L +L+HP + K+    + ++ ++   +    GG+L     
Sbjct: 174 AIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIV--LELMEGGELF---- 227

Query: 116 KQNDRV-----FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR---QSGHVTLT 167
              D+V        +  + Y  +++ A+++LH  GI +RDLKPEN+L+    +   + +T
Sbjct: 228 ---DKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKIT 284

Query: 168 DFDLSR 173
           DF  S+
Sbjct: 285 DFGHSK 290

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHE---FAVDWWALGILTYEMLYGTTPFRGKNRKE 295
                   +  GT  Y++PEV+   G      AVD W+LG++ +  L G  PF     + 
Sbjct: 292 LGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV 351

Query: 296 T-FRNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
           +    +      F+ +        AL DL+++LL  DP  R        E   H + + 
Sbjct: 352 SLKDQITSGKYNFIPEVWAEVSEKAL-DLVKKLLVVDPKARF----TTEEALRHPWLQD 405

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 98.4 bits (246), Expect = 1e-23
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRVLSRLSH 82
           + LGKGA   V     +         FA K+++   L A+  +   R   E R+  +L H
Sbjct: 12  EELGKGAFSVVRRCVHKTT----GLEFAAKIINTKKLSARDFQKLER---EARICRKLQH 64

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICA 137
           P + +L  S++ + F         GG+L        + +     +S +     + +I+ +
Sbjct: 65  PNIVRLHDSIQEESFHYLVFDLVTGGELF-------EDIVAREFYSEADASHCIQQILES 117

Query: 138 IEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
           I + H+ GI +R+LKPEN+L+    +   V L DF L+ 
Sbjct: 118 IAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 156

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            ++ E  + F GT  Y+SPEV++ D +   VD WA G++ Y +L G  PF  +++   + 
Sbjct: 158 VNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA 217

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
            +     ++           A   LI  +L  +P KR+     A +  +  +   
Sbjct: 218 QIKAGAYDYPSPEWDTVTPEAK-SLIDSMLTVNPKKRI----TADQALKVPWICN 267

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  100 bits (249), Expect = 1e-23
 Identities = 25/210 (11%), Positives = 55/210 (26%), Gaps = 37/210 (17%)

Query: 5   PPPQPQTTPSLD---LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
              QP    S        L    +LG+          D+         F + V   +   
Sbjct: 57  NTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATDQET----GESFEVHVPYFTERP 112

Query: 62  AKHEAER------------------------RARWEIRVLSRLSHPFLPKLLGSLET--- 94
             +  ++                        R  +   ++       + ++         
Sbjct: 113 PSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWV 172

Query: 95  -DEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL 151
              F  +             +L +    +            ++I  +  LH+ G+ +  L
Sbjct: 173 LSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYL 232

Query: 152 KPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
           +P +I++ Q G V LT F+       +   
Sbjct: 233 RPVDIVLDQRGGVFLTGFEHLVRDGARVVS 262

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 87.4 bits (216), Expect = 4e-19
 Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 24/120 (20%)

Query: 244 RSNSFVGTEEYVSPEVV-----------RGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
                  +  +  PE+            R     F+ D WALG++ Y +     P     
Sbjct: 258 ARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDA 317

Query: 293 RKETFRNVL---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
                  +       P+ V        L++  L      RL       +  E   ++ +R
Sbjct: 318 ALGGSEWIFRSCKNIPQPV------RALLEGFLRYPKEDRL----LPLQAMETPEYEQLR 367

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  100 bits (250), Expect = 2e-23
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 11/160 (6%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           + LG GA G V    ++A   T R  F  K ++      K+  +     EI ++++L HP
Sbjct: 57  EELGSGAFGVVHRCVEKA---TGR-VFVAKFINTPYPLDKYTVKN----EISIMNQLHHP 108

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            L  L  + E    +   + +  GG+L   R    D   S + +  Y+ +    ++H+H 
Sbjct: 109 KLINLHDAFEDKYEMVLILEFLSGGEL-FDRIAAEDYKMSEAEVINYMRQACEGLKHMHE 167

Query: 144 MGIAYRDLKPENILI--RQSGHVTLTDFDLSRNLVKKTAF 181
             I + D+KPENI+   +++  V + DF L+  L      
Sbjct: 168 HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV 207

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 92.9 bits (231), Expect = 6e-21
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            +  E       T E+ +PE+V  +   F  D WA+G+L Y +L G +PF G++  ET +
Sbjct: 201 LNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQ 260

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           NV     EF           A  D I+ LL+K+P KRL
Sbjct: 261 NVKRCDWEFDEDAFSSVSPEAK-DFIKNLLQKEPRKRL 297

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 17/189 (8%)

Query: 1   MEATPPPQPQTTPSLDLDNLKAL------KILGKGAMGTVFLVHDRAADPTARCPFALKV 54
           + A P P      +     + +       +ILG G  G V    + A   T     A K+
Sbjct: 66  IPAPPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETA---TGL-KLAAKI 121

Query: 55  VDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLR 114
           +    +  K E +     EI V+++L H  L +L  + E+   +   + Y  GG+L   R
Sbjct: 122 IKTRGMKDKEEVKN----EISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL-FDR 176

Query: 115 YKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLS 172
                   +      ++ +I   I H+H M I + DLKPENIL   R +  + + DF L+
Sbjct: 177 IIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLA 236

Query: 173 RNLVKKTAF 181
           R    +   
Sbjct: 237 RRYKPREKL 245

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 92.1 bits (229), Expect = 9e-21
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           +   E+     GT E+++PEVV  D   F  D W++G++ Y +L G +PF G N  ET  
Sbjct: 239 YKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLN 298

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           N+L    +   +        A  + I +LL K+   R+
Sbjct: 299 NILACRWDLEDEEFQDISEEA-KEFISKLLIKEKSWRI 335

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 22/169 (13%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RWEIRVLSRLS 81
           + LG G    V     +    T +  +A K + K  L +      R     E+ +L  + 
Sbjct: 11  EELGSGQFAIVRKCRQKG---TGK-EYAAKFIKKRRLSSSRRGVSREEIEREVNILREIR 66

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIIC 136
           HP +  L    E    +   +    GG+L        D +      +      +L +I+ 
Sbjct: 67  HPNIITLHDIFENKTDVVLILELVSGGELF-------DFLAEKESLTEDEATQFLKQILD 119

Query: 137 AIEHLHNMGIAYRDLKPENILI----RQSGHVTLTDFDLSRNLVKKTAF 181
            + +LH+  IA+ DLKPENI++      +  + L DF ++  +     F
Sbjct: 120 GVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEF 168

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 93.8 bits (234), Expect = 7e-22
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            + G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G+ ++ET  
Sbjct: 162 IEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLT 221

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           N+     +F  +        A  D I+RLL KDP +R+
Sbjct: 222 NISAVNYDFDEEYFSNTSELAK-DFIRRLLVKDPKRRM 258

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  101 bits (253), Expect = 2e-23
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 11/160 (6%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           + LG GA G V  V +RA   T    FA K V       K    +    EI+ +S L HP
Sbjct: 163 EELGTGAFGVVHRVTERA---TGN-NFAAKFVMTPHESDKETVRK----EIQTMSVLRHP 214

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            L  L  + E D  +     +  GG+L   +        S      Y+ ++   + H+H 
Sbjct: 215 TLVNLHDAFEDDNEMVMIYEFMSGGEL-FEKVADEHNKMSEDEAVEYMRQVCKGLCHMHE 273

Query: 144 MGIAYRDLKPENILI--RQSGHVTLTDFDLSRNLVKKTAF 181
               + DLKPENI+   ++S  + L DF L+ +L  K + 
Sbjct: 274 NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV 313

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 93.7 bits (233), Expect = 8e-21
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            D  +      GT E+ +PEV  G    +  D W++G+L+Y +L G +PF G+N  ET R
Sbjct: 307 LDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLR 366

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           NV                     D I++LL  DP  R+
Sbjct: 367 NVKSCDWNMDDSAFSGISEDGK-DFIRKLLLADPNTRM 403

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRVLSRLSH 82
           + LGKGA   V     +         FA K+++   L A+  +   R   E R+  +L H
Sbjct: 35  EELGKGAFSVVRRCVHKTT----GLEFAAKIINTKKLSARDFQKLER---EARICRKLQH 87

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICA 137
           P + +L  S++ + F         GG+L        + +     +S +     + +I+ +
Sbjct: 88  PNIVRLHDSIQEESFHYLVFDLVTGGELF-------EDIVAREFYSEADASHCIQQILES 140

Query: 138 IEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
           I + H+ GI +R+LKPEN+L+    +   V L DF L+ 
Sbjct: 141 IAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 179

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 89.7 bits (223), Expect = 6e-20
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            ++ E  + F GT  Y+SPEV++ D +   VD WA G++ Y +L G  PF  +++   + 
Sbjct: 181 VNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA 240

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
            +     ++           A   LI  +L  +P KR+     A +  +  +   
Sbjct: 241 QIKAGAYDYPSPEWDTVTPEAK-SLIDSMLTVNPKKRI----TADQALKVPWICN 290

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 98.0 bits (245), Expect = 3e-23
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 23/158 (14%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           ++LG GA   VFLV  R    T +  FALK + KS        E     EI VL ++ H 
Sbjct: 15  EVLGSGAFSEVFLVKQRL---TGK-LFALKCIKKSPAFRDSSLEN----EIAVLKKIKHE 66

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICAI 138
            +  L    E+       +    GG+L        DR+     ++       + +++ A+
Sbjct: 67  NIVTLEDIYESTTHYYLVMQLVSGGELF-------DRILERGVYTEKDASLVIQQVLSAV 119

Query: 139 EHLHNMGIAYRDLKPENILIRQSG---HVTLTDFDLSR 173
           ++LH  GI +RDLKPEN+L         + +TDF LS+
Sbjct: 120 KYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK 157

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            +     ++  GT  YV+PEV+    +  AVD W++G++TY +L G  PF  +   + F 
Sbjct: 158 MEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFE 217

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
            +     EF          +A  D I  LLEKDP +R 
Sbjct: 218 KIKEGYYEFESPFWDDISESAK-DFICHLLEKDPNERY 254

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 97.7 bits (244), Expect = 4e-23
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
            +LG+G+ G V        D    C  A+K++ K  L      E   + EI++L RL H 
Sbjct: 11  DLLGEGSYGKVKE----VLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHK 66

Query: 84  FLPKLLG--SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
            + +L+     E  + +   + YC  G   +L      R F       Y  ++I  +E+L
Sbjct: 67  NVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKR-FPVCQAHGYFCQLIDGLEYL 125

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           H+ GI ++D+KP N+L+   G + ++   ++
Sbjct: 126 HSQGIVHKDIKPGNLLLTTGGTLKISALGVA 156

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRG----DGHEFAVDWWALGILTYEMLYGTTP 287
           V+     F   +   +  G+  +  PE+  G     G  F VD W+ G+  Y +  G  P
Sbjct: 155 VAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSG--FKVDIWSAGVTLYNITTGLYP 212

Query: 288 FRGKNRKETFRNVLM---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
           F G N  + F N+       P   G    L+DL++ +LE +P KR        +I++H +
Sbjct: 213 FEGDNIYKLFENIGKGSYAIPGDCG--PPLSDLLKGMLEYEPAKRFSIR----QIRQHSW 266

Query: 345 FKGVRWDLLTDVLRPPFIPSREEND 369
           F+             P  PS +  D
Sbjct: 267 FRK---KHPPAEAPVPIPPSPDTKD 288

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 97.7 bits (244), Expect = 4e-23
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 14/174 (8%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
            +LG+GA   V    +          +A+K+++K   H +    R    E+ +L +   H
Sbjct: 19  DVLGEGAHARVQTCINLIT----SQEYAVKIIEKQPGHIRSRVFR----EVEMLYQCQGH 70

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
             + +L+   E ++          GG +  L +    R F+       + ++  A++ LH
Sbjct: 71  RNVLELIEFFEEEDRFYLVFEKMRGGSI--LSHIHKRRHFNELEASVVVQDVASALDFLH 128

Query: 143 NMGIAYRDLKPENILIRQSGHVT---LTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           N GIA+RDLKPENIL      V+   + DFDL   +         S      P 
Sbjct: 129 NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC 182

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 31/126 (24%)

Query: 248 FVGTEEYVSPEVVRGDGHEF-----AVDWWALGILTYEMLYGTTPFRGKNRKET------ 296
             G+ EY++PEVV     E        D W+LG++ Y +L G  PF G+   +       
Sbjct: 181 PCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGE 240

Query: 297 ---------FRNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKE 341
                    F ++     EF  +        A  DLI +LL +D  +RL     A ++ +
Sbjct: 241 ACPACQNMLFESIQEGKYEFPDKDWAHISCAA-KDLISKLLVRDAKQRL----SAAQVLQ 295

Query: 342 HVFFKG 347
           H + +G
Sbjct: 296 HPWVQG 301

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 96.9 bits (242), Expect = 4e-23
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           + LG+GA G V L    A +       A+K+VD        E  ++   EI +   L+H 
Sbjct: 13  QTLGEGAYGEVQL----AVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            + K  G           + YC GG+L      + D        + +  +++  + +LH 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           +GI +RD+KPEN+L+ +  ++ ++DF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 246 NSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVL 301
           N   GT  YV+PE+++          VD W+ GI+   ML G  P+    +  + + +  
Sbjct: 165 NKMCGTLPYVAPELLKRREFHAEP--VDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK 222

Query: 302 ---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF-KGVRWDLL 353
                   +    +A   L+ ++L ++P  R+       +IK+  ++ K ++    
Sbjct: 223 EKKTYLNPWKKIDSAPLALLHKILVENPSARITIP----DIKKDRWYNKPLKKGAK 274

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 98.3 bits (245), Expect = 4e-23
 Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 21/185 (11%)

Query: 1   MEATPPPQPQTTPSLD------LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKV 54
           M    PP+      L             +  LG GA G V+     A D        +K 
Sbjct: 1   MALEEPPKAVELEGLAACEGEYSQKYSTMSPLGSGAFGFVWT----AVDKEKNKEVVVKF 56

Query: 55  VDKSTLHAKHEAERRARW----EIRVLSRLSHPFLPKLLGSLETDEFLAWAV--PYCPGG 108
           + K  +      E         EI +LSR+ H  + K+L   E   F    V   +  G 
Sbjct: 57  IKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFF-QLVMEKHGSGL 115

Query: 109 DL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT 167
           DL   +            +  +   +++ A+ +L    I +RD+K ENI+I +   + L 
Sbjct: 116 DLFAFIDRHPR---LDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLI 172

Query: 168 DFDLS 172
           DF  +
Sbjct: 173 DFGSA 177

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 17/161 (10%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
            + G+   +F GT EY +PEV+ G    G E  ++ W+LG+  Y +++   PF     +E
Sbjct: 180 LERGKLFYTFCGTIEYCAPEVLMGNPYRGPE--LEMWSLGVTLYTLVFEENPFC--ELEE 235

Query: 296 TFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF-KGVRWDLLT 354
           T    +   P  V     L  L+  LL+  P +R        ++    +  + V     T
Sbjct: 236 TVEAAI-HPPYLVS--KELMSLVSGLLQPVPERRTTLE----KLVTDPWVTQPVNLADYT 288

Query: 355 --DVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPP 393
             +V R     S   +  + +  +    D+ +  E      
Sbjct: 289 WEEVFRVNKPESGVLSAASLEMGNRSLSDVAQAQELCGGEG 329

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 97.7 bits (244), Expect = 5e-23
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 30/173 (17%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA--RWEIRVLSRLS 81
           + LG G    V    +++   T    +A K + K    +      R     E+ +L  + 
Sbjct: 17  EELGSGQFAVVKKCREKS---TGL-QYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE-------- 133
           HP +  L    E    +   +    GG+L        D +      +  L+E        
Sbjct: 73  HPNVITLHEVYENKTDVILILELVAGGELF-------DFL----AEKESLTEEEATEFLK 121

Query: 134 -IICAIEHLHNMGIAYRDLKPENILIR----QSGHVTLTDFDLSRNLVKKTAF 181
            I+  + +LH++ IA+ DLKPENI++         + + DF L+  +     F
Sbjct: 122 QILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF 174

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            D G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET  
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA 227

Query: 299 NVLMKTPEFVGQRTALT-----DLIQRLLEKDPVKRL 330
           NV     EF  +  + T     D I+RLL KDP KR+
Sbjct: 228 NVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM 264

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 97.7 bits (244), Expect = 5e-23
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 26/163 (15%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER----RARWEIRVLSR 79
           K LG GA G V L  +R    T +   A+K++ K         E         EI +L +
Sbjct: 16  KTLGSGACGEVKLAFERK---TCK-KVAIKIISKRKFAIGSAREADPALNVETEIEILKK 71

Query: 80  LSHPFLPKLLGSLETDE-FLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSE 133
           L+HP + K+    + ++ ++   +    GG+L        D+V        +  + Y  +
Sbjct: 72  LNHPCIIKIKNFFDAEDYYIV--LELMEGGELF-------DKVVGNKRLKEATCKLYFYQ 122

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSG---HVTLTDFDLSR 173
           ++ A+++LH  GI +RDLKPEN+L+        + +TDF  S+
Sbjct: 123 MLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK 165

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 15/119 (12%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGD---GHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
                   +  GT  Y++PEV+      G+  AVD W+LG++ +  L G  PF     + 
Sbjct: 167 LGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV 226

Query: 296 T-FRNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
           +    +      F+ +        AL DL+++LL  DP  R        E   H + + 
Sbjct: 227 SLKDQITSGKYNFIPEVWAEVSEKAL-DLVKKLLVVDPKARF----TTEEALRHPWLQD 280

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 96.1 bits (240), Expect = 9e-23
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 23/158 (14%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
             +G+G+ G V +   +      R   A K + K  +      ++    EI ++  L HP
Sbjct: 15  NTIGRGSWGEVKIAVQKGT----RIRRAAKKIPKYFVEDVDRFKQ----EIEIMKSLDHP 66

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICAI 138
            + +L  + E +  +   +  C GG+L        +RV     F  S     + +++ A+
Sbjct: 67  NIIRLYETFEDNTDIYLVMELCTGGELF-------ERVVHKRVFRESDAARIMKDVLSAV 119

Query: 139 EHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSR 173
            + H + +A+RDLKPEN L         + L DF L+ 
Sbjct: 120 AYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA 157

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           F  G+   + VGT  YVSP+V+ G  +    D W+ G++ Y +L G  PF      E   
Sbjct: 159 FKPGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVML 217

Query: 299 NVLMKTPEFVGQRTALT-----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
            +   T  F  +           LI+RLL K P +R+     + +  EH +F+ 
Sbjct: 218 KIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRI----TSLQALEHEWFEK 267

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS-----TLH 61
           P   +T     +N +  +ILG+G    V     +    T +  +A+K++D +     +  
Sbjct: 7   PGSHSTHGFY-ENYEPKEILGRGVSSVVRRCIHKP---TCK-EYAVKIIDVTGGGSFSAE 61

Query: 62  AKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
              E       E+ +L ++S HP + +L  + ET+ F          G+L        D 
Sbjct: 62  EVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELF-------DY 114

Query: 121 V-----FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +      S    R  +  ++  I  LH + I +RDLKPENIL+    ++ LTDF  S 
Sbjct: 115 LTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSC 172

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEF------AVDWWALGILTYEMLYGTTPFRGKN 292
            D GE+     GT  Y++PE++    ++        VD W+ G++ Y +L G+ PF  + 
Sbjct: 174 LDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK 233

Query: 293 RKETFRNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           +    R ++    +F          T   DL+ R L   P KR      A E   H FF+
Sbjct: 234 QMLMLRMIMSGNYQFGSPEWDDYSDTVK-DLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

Query: 347 GVRWD 351
               +
Sbjct: 289 QYVVE 293

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           + LG+GA G V L    A +       A+K+VD        E  ++   EI +   L+H 
Sbjct: 13  QTLGEGAYGEVQL----AVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            + K  G           + YC GG+L      + D        + +  +++  + +LH 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLS 172
           +GI +RD+KPEN+L+ +  ++ ++DF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 16/131 (12%)

Query: 246 NSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVL 301
           N   GT  YV+PE+++          VD W+ GI+   ML G  P+    +  + + +  
Sbjct: 165 NKMCGTLPYVAPELLKRREFHAEP--VDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK 222

Query: 302 ---MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLR 358
                   +    +A   L+ ++L ++P  R+       +IK+  ++      L     R
Sbjct: 223 EKKTYLNPWKKIDSAPLALLHKILVENPSARITIP----DIKKDRWYNK---PLKKGAKR 275

Query: 359 PPFIPSREEND 369
           P          
Sbjct: 276 PRVTSGGVSES 286

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 23/159 (14%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRVLSRLSH 82
           + LGKGA   V       A       +A  +++   L A+ H+   R   E R+   L H
Sbjct: 17  EELGKGAFSVVRRCVKVLA----GQEYAAMIINTKKLSARDHQKLER---EARICRLLKH 69

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICA 137
           P + +L  S+  +           GG+L        + +     +S +     + +I+ A
Sbjct: 70  PNIVRLHDSISEEGHHYLIFDLVTGGELF-------EDIVAREYYSEADASHCIQQILEA 122

Query: 138 IEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
           + H H MG+ +R+LKPEN+L+    +   V L DF L+ 
Sbjct: 123 VLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAI 161

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
              +    F GT  Y+SPEV+R D +   VD WA G++ Y +L G  PF  +++   ++ 
Sbjct: 165 GEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQ 224

Query: 300 VLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
           +     +F           A  DLI ++L  +P KR+     A E  +H +   
Sbjct: 225 IKAGAYDFPSPEWDTVTPEAK-DLINKMLTINPSKRI----TAAEALKHPWISH 273

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 97.0 bits (241), Expect = 3e-22
 Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 36/185 (19%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           L    +LG+          D+    T    F + V   +       A ++ + E+  L  
Sbjct: 80  LVRGTVLGQEDPYAYLEATDQE---TGE-SFEVHVPYFT-ERPPSNAIKQMKEEVLRLRL 134

Query: 80  LS----------------------HPFLPKLLGSLETDE-------FLAWAVPYCPGGDL 110
           L                        P   K++     +        F  +          
Sbjct: 135 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTF 194

Query: 111 --NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD 168
              +L +    +            ++I  +  LH+ G+ +  L+P +I++ Q G V LT 
Sbjct: 195 GEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTG 254

Query: 169 FDLSR 173
           F+   
Sbjct: 255 FEHLV 259

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 87.8 bits (217), Expect = 4e-19
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 14/130 (10%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHE-----FAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
                    E  +  ++    H      FA D W LG+  Y +     P           
Sbjct: 268 PIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSE 327

Query: 299 NVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDV-- 356
            +             +  L++  L      RL       +  E   ++ +R +L   +  
Sbjct: 328 WIFRSCKNI---PQPVRALLEGFLRYPKEDRL----LPLQAMETPEYEQLRTELSAALPL 380

Query: 357 LRPPFIPSRE 366
            +    P+RE
Sbjct: 381 YQTDGEPTRE 390

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 95.0 bits (237), Expect = 4e-22
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
              G+         EY +PEV + D    A D W+LG L Y +L G  PF  +  ++   
Sbjct: 154 LKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIE 213

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           N++     F  +        A+ D + RLL K+   R+
Sbjct: 214 NIMNAEYTFDEEAFKEISIEAM-DFVDRLLVKERKSRM 250

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 95.0 bits (237), Expect = 5e-22
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           + LG+G  G V    + +   + +  +  K V            ++   EI +L+   H 
Sbjct: 11  EDLGRGEFGIVHRCVETS---SKK-TYMAKFVKVKGT--DQVLVKK---EISILNIARHR 61

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            +  L  S E+ E L     +  G D+   R   +    +   I  Y+ ++  A++ LH+
Sbjct: 62  NILHLHESFESMEELVMIFEFISGLDI-FERINTSAFELNEREIVSYVHQVCEALQFLHS 120

Query: 144 MGIAYRDLKPENILI--RQSGHVTLTDFDLSRNLVKKTAF 181
             I + D++PENI+   R+S  + + +F  +R L     F
Sbjct: 121 HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF 160

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 13  PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
              + D      +LGKG  G V+       D + +   A+K + +               
Sbjct: 17  YDYEYDENGDRVVLGKGTYGIVYA----GRDLSNQVRIAIKEIPERDSRYSQPLHE---- 68

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYL 131
           EI +   L H  + + LGS   + F+   +   PGG L  +LR K      +   I FY 
Sbjct: 69  EIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYT 128

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNL 175
            +I+  +++LH+  I +RD+K +N+LI   SG + ++DF  S+ L
Sbjct: 129 KQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRL 173

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGD--GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF 297
                + +F GT +Y++PE++     G+  A D W+LG    EM  G  PF      E  
Sbjct: 175 GINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFY--ELGEPQ 232

Query: 298 RNVLMK------TPEFVGQRT-ALTDLIQRLLEKDPVKR 329
              + K       PE     +      I +  E DP KR
Sbjct: 233 A-AMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKR 270

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 97.1 bits (242), Expect = 5e-22
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 28/167 (16%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH---------EAERRARWEI 74
           + LG GA G V L  ++          A+KV+ KS               +       EI
Sbjct: 42  RKLGSGAYGEVLLCKEKN---GHS-EKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEI 97

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRF 129
            +L  L HP + KL    E  ++      +  GG+L        +++     F       
Sbjct: 98  SLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELF-------EQIINRHKFDECDAAN 150

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
            + +I+  I +LH   I +RD+KPENIL+       ++ + DF LS 
Sbjct: 151 IMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSS 197

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
           F    +    +GT  Y++PEV++   +    D W+ G++ Y +L G  PF G+N ++  +
Sbjct: 199 FSKDYKLRDRLGTAYYIAPEVLKKK-YNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIK 257

Query: 299 NVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRL 330
            V      F             +LI+ +L  D  KR 
Sbjct: 258 KVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRC 294

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 95.6 bits (238), Expect = 5e-22
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK----HEAERRARWEIRVLSR 79
            ++G+G    V     RA        FA+K+++ +          E     R E  +L +
Sbjct: 100 DVIGRGVSSVVRRCVHRAT----GHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQ 155

Query: 80  LS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSE 133
           ++ HP +  L+ S E+  F+         G+L        D +      S    R  +  
Sbjct: 156 VAGHPHIITLIDSYESSSFMFLVFDLMRKGELF-------DYLTEKVALSEKETRSIMRS 208

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++ A+  LH   I +RDLKPENIL+  +  + L+DF  S 
Sbjct: 209 LLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSC 248

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 17/120 (14%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEF------AVDWWALGILTYEMLYGTTPFRGKN 292
            + GE+     GT  Y++PE+++    E        VD WA G++ + +L G+ PF  + 
Sbjct: 250 LEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR 309

Query: 293 RKETFRNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           +    R ++    +F          T   DLI RLL+ DP  RL     A +  +H FF+
Sbjct: 310 QILMLRMIMEGQYQFSSPEWDDRSSTVK-DLISRLLQVDPEARL----TAEQALQHPFFE 364

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 94.4 bits (235), Expect = 9e-22
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 22/194 (11%)

Query: 2   EATPPPQPQTTPSLDLDNLKA-------------LKILGKGAMGTVFLVHDRAADPTARC 48
              P P      SL   ++               L+ +G G+ G V+   D         
Sbjct: 25  AMDPMPAGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVV-- 82

Query: 49  PFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPG 107
             A+K +  S   +  + +   + E+R L +L HP   +  G    +    W V  YC G
Sbjct: 83  --AIKKMSYSGKQSNEKWQDIIK-EVRFLQKLRHPNTIQYRGCYLREHTA-WLVMEYCLG 138

Query: 108 GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT 167
              ++L  + + +      I       +  + +LH+  + +RD+K  NIL+ + G V L 
Sbjct: 139 SASDLL--EVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLG 196

Query: 168 DFDLSRNLVKKTAF 181
           DF  +  +    +F
Sbjct: 197 DFGSASIMAPANSF 210

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 244 RSNSFVGTEEYVSPEVVRGD---GHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRN 299
            +NSFVGT  +++PEV+       ++  VD W+LGI   E+     P    N     +  
Sbjct: 206 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI 265

Query: 300 VLMKTPEFVGQR--TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
              ++P            + +   L+K P  R      +  + +H F    R
Sbjct: 266 AQNESPALQSGHWSEYFRNFVDSCLQKIPQDRP----TSEVLLKHRFVLRER 313

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 94.3 bits (235), Expect = 1e-21
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           LK +GKG    V L        T R   A+K++DK+ L     + ++   E+R++  L+H
Sbjct: 20  LKTIGKGNFAKVKLARHI---LTGR-EVAIKIIDKTQL--NPTSLQKLFREVRIMKILNH 73

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + KL   +ET++ L   + Y  GG++    Y            R    +I+ A+++ H
Sbjct: 74  PNIVKLFEVIETEKTLYLIMEYASGGEV--FDYLVAHGRMKEKEARSKFRQIVSAVQYCH 131

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
              I +RDLK EN+L+    ++ + DF  S
Sbjct: 132 QKRIVHRDLKAENLLLDADMNIKIADFGFS 161

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
           F  G + ++F G   Y +PE+ +G   DG E  VD W+LG++ Y ++ G+ PF G+N KE
Sbjct: 164 FTVGGKLDAFCGAPPYAAPELFQGKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKE 221

Query: 296 TFRNVLM---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL 352
               VL    + P ++   T   +L++R L  +P+KR        +I +  +        
Sbjct: 222 LRERVLRGKYRIPFYMS--TDCENLLKRFLVLNPIKRG----TLEQIMKDRWIN---AGH 272

Query: 353 LTDVLRPPFIPSREEND-LTEKAMSGGGVDIREYFENLRAPPPS 395
             D L+P   P  + +D      M G G    E  E+L      
Sbjct: 273 EEDELKPFVEPELDISDQKRIDIMVGMGYSQEEIQESLSKMKYD 316

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 15/186 (8%)

Query: 5   PPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH 64
            PP             +   +LGKG  GTVF  H            A+KV+ ++ +    
Sbjct: 18  TPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLT---DRL-QVAIKVIPRNRVLGWS 73

Query: 65  EAERRARW--EIRVLSRLS----HPFLPKLLGSLETDEFLAWAVPY-CPGGDLNVLRYKQ 117
                     E+ +L ++     HP + +LL   ET E     +    P  DL    Y  
Sbjct: 74  PLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDL--FDYIT 131

Query: 118 NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLV 176
                     R +  +++ AI+H H+ G+ +RD+K ENILI  + G   L DF     L+
Sbjct: 132 EKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSG-ALL 190

Query: 177 KKTAFE 182
               + 
Sbjct: 191 HDEPYT 196

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 248 FVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT 304
           F GT  Y  PE +              W+LGIL Y+M+ G  PF     +E     L   
Sbjct: 198 FDGTRVYSPPEWISRHQYHALP--ATVWSLGILLYDMVCGDIPFER--DQEILEAEL-HF 252

Query: 305 PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           P  V        LI+R L   P  R        EI    + +
Sbjct: 253 PAHVS--PDCCALIRRCLAPKPSSRPSL----EEILLDPWMQ 288

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 9   PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
            +    + + +      LG G  G V +              A+K++++  + +     +
Sbjct: 2   SKHDGRVKIGHYVLGDTLGVGTFGKVKI----GEHQLTGHKVAVKILNRQKIRSLDVVGK 57

Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
             R EI+ L    HP + KL   + T       + Y  GG+L    Y            R
Sbjct: 58  IKR-EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGEL--FDYICKHGRVEEMEAR 114

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
               +I+ A+++ H   + +RDLKPEN+L+    +  + DF LS
Sbjct: 115 RLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS 158

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
             +GE   +  G+  Y +PEV+ G    G E  VD W+ G++ Y +L GT PF  ++   
Sbjct: 161 MSDGEFLRTSCGSPNYAAPEVISGRLYAGPE--VDIWSCGVILYALLCGTLPFDDEHVPT 218

Query: 296 TFRNVLM---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            F+ +       PE++    ++  L+  +L+ DP+KR        +I+EH +FK
Sbjct: 219 LFKKIRGGVFYIPEYLN--RSVATLLMHMLQVDPLKRATIK----DIREHEWFK 266

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 94.8 bits (236), Expect = 2e-21
 Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
            +LG GA GT+            R   A+K +          A+R    E+++L     H
Sbjct: 30  DVLGHGAEGTIVYRGMF----DNR-DVAVKRILPECFSF---ADR----EVQLLRESDEH 77

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + +   + +  +F   A+  C    L     +Q D           L +    + HLH
Sbjct: 78  PNVIRYFCTEKDRQFQYIAIELC-AATLQE-YVEQKDFAHLGLEPITLLQQTTSGLAHLH 135

Query: 143 NMGIAYRDLKPENILIRQSGH-----VTLTDFDLSRNLV 176
           ++ I +RDLKP NILI            ++DF L + L 
Sbjct: 136 SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA 174

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 19/122 (15%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHE---FAVDWWALGILTYEML-YGTTPFRGK 291
           + SF    R +   GTE +++PE++  D  E   + VD ++ G + Y ++  G+ PF   
Sbjct: 177 RHSF---SRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKS 233

Query: 292 NRKETFRNVLMKTPEF------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF 345
            +++   N+L+             +     +LI++++  DP KR      A  + +H FF
Sbjct: 234 LQRQA--NILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRP----SAKHVLKHPFF 287

Query: 346 KG 347
             
Sbjct: 288 WS 289

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 15/185 (8%)

Query: 5   PPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL--HA 62
               P           +   +LG G  G+V+     +       P A+K V+K  +    
Sbjct: 30  TKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVS---DNL-PVAIKHVEKDRISDWG 85

Query: 63  KHEAERRARWEIRVLSRLSHPFLP---KLLGSLETDEFLAWAVPYC-PGGDLNVLRYKQN 118
           +     R   E+ +L ++S  F     +LL   E  +     +    P  DL    +   
Sbjct: 86  ELPNGTRVPMEVVLLKKVSSGF-SGVIRLLDWFERPDSFVLILERPEPVQDL--FDFITE 142

Query: 119 DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVK 177
                  + R +  +++ A+ H HN G+ +RD+K ENILI    G + L DF     L+K
Sbjct: 143 RGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSG-ALLK 201

Query: 178 KTAFE 182
            T + 
Sbjct: 202 DTVYT 206

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 248 FVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT 304
           F GT  Y  PE +R     G       W+LGIL Y+M+ G  PF     +E  R  +   
Sbjct: 208 FDGTRVYSPPEWIRYHRYHGRS--AAVWSLGILLYDMVCGDIPFEH--DEEIIRGQV-FF 262

Query: 305 PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPS 364
            + V   +    LI+  L   P  R  +     EI+ H       W  + DVL P     
Sbjct: 263 RQRVS--SECQHLIRWCLALRPSDRPTFE----EIQNH------PW--MQDVLLPQETAE 308

Query: 365 REENDLT 371
              + L+
Sbjct: 309 IHLHSLS 315

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 1   MEATPPPQ-PQTTPSL-DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS 58
           M+  P    P   P + D D    +K +G G  G   L+ D+    T     A+K +++ 
Sbjct: 1   MDRAPVTTGPLDMPIMHDSDRYDFVKDIGSGNFGVARLMRDK---LTKE-LVAVKYIERG 56

Query: 59  TLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN 118
               ++  +R    EI     L HP + +    + T   LA  + Y  GG+L       N
Sbjct: 57  AAIDEN-VQR----EIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGEL--YERICN 109

Query: 119 DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLS 172
              FS    RF+  +++  + + H+M I +RDLK EN L+    +  + + DF  S
Sbjct: 110 AGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYS 165

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
           S     +  S VGT  Y++PEV+     DG     D W+ G+  Y ML G  PF      
Sbjct: 167 SSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKI--ADVWSCGVTLYVMLVGAYPFEDPEEP 224

Query: 295 ETFRNVLMK-------TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             +R  + +        P+ +        LI R+   DP  R+       EIK H +F 
Sbjct: 225 RDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIP----EIKTHSWFL 279

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 28/196 (14%)

Query: 1   MEATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL 60
           M       P +      D+ +  +++G GA   V      A     +   A+K ++    
Sbjct: 1   MSEDSSALPWSINR---DDYELQEVIGSGATAVVQ----AAYCAPKKEKVAIKRINLEKC 53

Query: 61  HAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDL-NVLRYKQN 118
               +   +   EI+ +S+  HP +     S    + L W V     GG + +++++   
Sbjct: 54  QTSMDELLK---EIQAMSQCHHPNIVSYYTSFVVKDEL-WLVMKLLSGGSVLDIIKHIVA 109

Query: 119 D-----RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF---- 169
                  V   S I   L E++  +E+LH  G  +RD+K  NIL+ + G V + DF    
Sbjct: 110 KGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSA 169

Query: 170 ------DLSRNLVKKT 179
                 D++RN V+KT
Sbjct: 170 FLATGGDITRNKVRKT 185

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 246 NSFVGTEEYVSPEVV-RGDGHEFAVDWWALGILTYEMLYGTTPFRG-----------KNR 293
            +FVGT  +++PEV+ +  G++F  D W+ GI   E+  G  P+             +N 
Sbjct: 184 KTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQND 243

Query: 294 KETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
             +    +           +   +I   L+KDP KR      A E+  H FF+  +
Sbjct: 244 PPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRP----TAAELLRHKFFQKAK 295

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
             +       +GT EY++PE++  D    A D W +GI+ Y +L  T+PF G++ +ET+ 
Sbjct: 184 IGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYL 243

Query: 299 NVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
           N+     ++  +      + A TD IQ LL K+P KR 
Sbjct: 244 NISQVNVDYSEETFSSVSQLA-TDFIQSLLVKNPEKRP 280

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 89.2 bits (222), Expect = 5e-20
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH- 82
           K LG+G    V     ++   T +  +A K + K        AE     EI VL      
Sbjct: 35  KELGRGKFAVVRQCISKS---TGQ-EYAAKFLKKRRRGQDCRAE--ILHEIAVLELAKSC 88

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV-------FSPSVIRFYLSEII 135
           P +  L    E    +   + Y  GG++                   S + +   + +I+
Sbjct: 89  PRVINLHEVYENTSEIILILEYAAGGEIF-------SLCLPELAEMVSENDVIRLIKQIL 141

Query: 136 CAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSR 173
             + +LH   I + DLKP+NIL+      G + + DF +SR
Sbjct: 142 EGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSR 182

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 92.0 bits (229), Expect = 5e-21
 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 17/154 (11%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           K LG+G+         + +       FA+K++ K             + EI  L     H
Sbjct: 17  KPLGEGSFSICRKCVHKKS----NQAFAVKIISKRMEA-------NTQKEITALKLCEGH 65

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P + KL             +    GG+L      +  + FS +   + + +++ A+ H+H
Sbjct: 66  PNIVKLHEVFHDQLHTFLVMELLNGGEL--FERIKKKKHFSETEASYIMRKLVSAVSHMH 123

Query: 143 NMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
           ++G+ +RDLKPEN+L      +  + + DF  +R
Sbjct: 124 DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFAR 157

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 18/121 (14%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK----- 294
            + +   +   T  Y +PE++  +G++ + D W+LG++ Y ML G  PF+  +R      
Sbjct: 161 PDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTS 220

Query: 295 --ETFRNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             E  + +      F G+      + A  DLIQ LL  DP KRL        ++ + + +
Sbjct: 221 AVEIMKKIKKGDFSFEGEAWKNVSQEA-KDLIQGLLTVDPNKRL----KMSGLRYNEWLQ 275

Query: 347 G 347
            
Sbjct: 276 D 276

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 91.2 bits (227), Expect = 9e-21
 Identities = 64/324 (19%), Positives = 116/324 (35%), Gaps = 72/324 (22%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
               +L   ++LGKG  G    V  R             +V K  +    E +R    E+
Sbjct: 7   FRPSDLIHGEVLGKGCFGQAIKVTHRETGEV--------MVMKELIRFDEETQRTFLKEV 58

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+  L HP + K +G L  D+ L +   Y  GG L  +++    D  +  S    +  +
Sbjct: 59  KVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIK--SMDSQYPWSQRVSFAKD 116

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           I   + +LH+M I +RDL   N L+R++ +V + DF L+R L+     + + L + K P 
Sbjct: 117 IASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLAR-LMVDEKTQPEGLRSLKKPD 175

Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                                                            ++  + VG   
Sbjct: 176 ------------------------------------------------RKKRYTVVGNPY 187

Query: 254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQR-- 311
           +++PE++ G  ++  VD ++ GI+  E++               R +             
Sbjct: 188 WMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPD----YLPRTMDFGLNVRGFLDRY 243

Query: 312 ------TALTDLIQRLLEKDPVKR 329
                  +   +  R  + DP KR
Sbjct: 244 CPPNCPPSFFPITVRCCDLDPEKR 267

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 91.4 bits (227), Expect = 1e-20
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 10/171 (5%)

Query: 8   QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE 67
           Q Q    L  D+ + +  LG G  G VF V  +   P+     A K++    L  K    
Sbjct: 23  QKQKVGELKDDDFEKISELGAGNGGVVFKVSHK---PSGL-VMARKLIH---LEIKPAIR 75

Query: 68  RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI 127
            +   E++VL   + P++    G+  +D  ++  + +  GG L+ +  K+  R     ++
Sbjct: 76  NQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQV-LKKAGR-IPEQIL 133

Query: 128 RFYLSEIICAIEHLHNMG-IAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
                 +I  + +L     I +RD+KP NIL+   G + L DF +S  L+ 
Sbjct: 134 GKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID 184

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 245 SNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
           +NSFVGT  Y+SPE ++G  +    D W++G+   EM  G  P    + KE    
Sbjct: 187 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELM 241

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 90.5 bits (225), Expect = 1e-20
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +  LG GA G V+   ++     A    A KV++  +     +       EI +L+   H
Sbjct: 24  VGELGDGAFGKVYKAKNKETGALA----AAKVIETKSEEELEDYIV----EIEILATCDH 75

Query: 83  PFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P++ KLLG+   D  L W +  +CPGG ++ +   + DR  +   I+    +++ A+  L
Sbjct: 76  PYIVKLLGAYYHDGKL-WIMIEFCPGGAVDAI-MLELDRGLTEPQIQVVCRQMLEALNFL 133

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDF----DLSRNLVKKTAF 181
           H+  I +RDLK  N+L+   G + L DF       + L K+ +F
Sbjct: 134 HSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSF 177

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVV-----RGDGHEFAVDWWALGILTYEMLYG------T 285
           ++    ++ +SF+GT  +++PEVV     +   +++  D W+LGI   EM          
Sbjct: 166 KNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL 225

Query: 286 TPFR-----GKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK 340
            P R      K+   T       + EF        D ++  L+K+P  R      A ++ 
Sbjct: 226 NPMRVLLKIAKSDPPTLLTPSKWSVEFR-------DFLKIALDKNPETRP----SAAQLL 274

Query: 341 EHVFFKGVR 349
           EH F   + 
Sbjct: 275 EHPFVSSIT 283

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 72/404 (17%), Positives = 126/404 (31%), Gaps = 126/404 (31%)

Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
             ++++L+ L  +G G  G V+ +  R    T     A+K +         E  +R   +
Sbjct: 21  QAEINDLENLGEMGSGTCGQVWKMRFR---KTGHV-IAVKQMR---RSGNKEENKRILMD 73

Query: 74  IRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           + V+ +    P++ +  G+  T+  +  A+             K+        ++     
Sbjct: 74  LDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAE--KLKKRMQGPIPERILGKMTV 131

Query: 133 EIICAIEHLH-NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
            I+ A+ +L    G+ +RD+KP NIL+ + G + L DF +S  LV            ++ 
Sbjct: 132 AIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD-------DKAKDRS 184

Query: 192 PVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT 251
                                A PE           R+ P    +  +D           
Sbjct: 185 --------------AGCAAYMA-PE-----------RIDPPDPTKPDYD----------- 207

Query: 252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-------- 303
                             D W+LGI   E+  G  P++      T   VL K        
Sbjct: 208 ---------------IRADVWSLGISLVELATGQFPYKNCK---TDFEVLTKVLQEEPPL 249

Query: 304 -------TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDV 356
                  + +F          ++  L KD  KR  Y                   LL   
Sbjct: 250 LPGHMGFSGDFQ-------SFVKDCLTKDHRKRPKY-----------------NKLLEH- 284

Query: 357 LRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSP 400
               FI   E  +          VD+  +F+++ A   S    P
Sbjct: 285 ---SFIKRYETLE----------VDVASWFKDVMAKTESPRSGP 315

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 90.2 bits (224), Expect = 3e-20
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 18/171 (10%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA 66
                    ++  +     +G+G+ G V        D       A+K V       +   
Sbjct: 47  KPVDYEYREEVHWMTHQPRVGRGSFGEVHR----MKDKQTGFQCAVKKVRLEVFRVE--- 99

Query: 67  ERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPS 125
                 E+   + LS P +  L G++    ++   +    GG L  +++           
Sbjct: 100 ------ELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK---QMGCLPED 150

Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDLSRNL 175
              +YL + +  +E+LH   I + D+K +N+L+   G    L DF  +  L
Sbjct: 151 RALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCL 201

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 22/129 (17%)

Query: 229 VSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF 288
            +   +      +    +   GTE +++PEVV G   +  VD W+   +   ML G  P+
Sbjct: 197 HALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPW 256

Query: 289 R-----------GKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGAC 337
                                    + P            IQ  L K+PV R      A 
Sbjct: 257 TQYFRGPLCLKIASEPPPIR-----EIPPSCAP--LTAQAIQEGLRKEPVHRA----SAM 305

Query: 338 EIKEHVFFK 346
           E++  V   
Sbjct: 306 ELRRKVGKA 314

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 90.4 bits (224), Expect = 4e-20
 Identities = 76/395 (19%), Positives = 125/395 (31%), Gaps = 107/395 (27%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
             ++ LG G   TV+L  D       +   A+KVV KS   A+H  E  A  EIR+L  +
Sbjct: 40  HVIRKLGWGHFSTVWLSWDI----QGKKFVAMKVV-KS---AEHYTET-ALDEIRLLKSV 90

Query: 81  -----SHP---FLPKLLGSLETD-----------EFLAWAVPYCPGGDLNVLRYKQNDRV 121
                + P    + +LL   +             E L        G  L     K N + 
Sbjct: 91  RNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVL--------GHHLLKWIIKSNYQG 142

Query: 122 FSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
                ++  + +++  +++LH    I + D+KPENIL      +++ +  + R       
Sbjct: 143 LPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENIL------LSVNEQYIRRL------ 190

Query: 181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD 240
             + +         P              +L    E K   K          +       
Sbjct: 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVH--- 247

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF------------ 288
             +     + T +Y S EV+ G G+    D W+   + +E+  G   F            
Sbjct: 248 --KHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDE 305

Query: 289 -------------------RGKNRKETF-----------------RNVLMKTPEFVGQ-R 311
                               GK  KE F                   VL++  E+  +  
Sbjct: 306 DHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEA 365

Query: 312 TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
              TD +  +LE  P KR      A E   H +  
Sbjct: 366 AGFTDFLLPMLELIPEKRA----TAAECLRHPWLN 396

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 88.9 bits (221), Expect = 5e-20
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +GKG+ G VF   D           A+K++D      + E  ++   EI VLS+   
Sbjct: 27  LEKIGKGSFGEVFKGIDNRTQKVV----AIKIIDLEEAEDEIEDIQQ---EITVLSQCDS 79

Query: 83  PFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P++ K  GS   D  L W +  Y  GG    L  +        + I   L EI+  +++L
Sbjct: 80  PYVTKYYGSYLKDTKL-WIIMEYLGGGSALDL-LEPG--PLDETQIATILREILKGLDYL 135

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDF----DLSRNLVKKTAF 181
           H+    +RD+K  N+L+ + G V L DF     L+   +K+  F
Sbjct: 136 HSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTF 179

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           Q  D   + N+FVGT  +++PEV++   ++   D W+LGI   E+  G  P    +    
Sbjct: 168 QLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH---P 224

Query: 297 FRNVLM----KTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            + + +      P   G  +  L + ++  L K+P  R      A E+ +H F  
Sbjct: 225 MKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRP----TAKELLKHKFIL 275

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 88.5 bits (220), Expect = 5e-20
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 31/173 (17%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW----------- 72
             +GKG+ G V L    A +      +A+KV+ K  L  +    RR              
Sbjct: 19  DEIGKGSYGVVKL----AYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCI 74

Query: 73  -----------EIRVLSRLSHPFLPKLLGSLE--TDEFLAWAVPYCPGGDLNVLRYKQND 119
                      EI +L +L HP + KL+  L+   ++ L         G +  +      
Sbjct: 75  QPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPV--MEVPTLK 132

Query: 120 RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
              S    RFY  ++I  IE+LH   I +RD+KP N+L+ + GH+ + DF +S
Sbjct: 133 P-LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVS 184

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 10/105 (9%)

Query: 248 FVGTEEYVSPEVVRGDGHEF---AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL--- 301
            VGT  +++PE +      F   A+D WA+G+  Y  ++G  PF  +        +    
Sbjct: 197 TVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQA 256

Query: 302 MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           ++ P+       L DLI R+L+K+P  R+       EIK H +  
Sbjct: 257 LEFPDQPDIAEDLKDLITRMLDKNPESRIVVP----EIKLHPWVT 297

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 33/162 (20%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
             LG+GA   V+    +        P+ALKV+ K+      +  R    EI VL RLSHP
Sbjct: 59  SELGRGATSIVYRCKQKGTQ----KPYALKVLKKT---VDKKIVRT---EIGVLLRLSHP 108

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE---------I 134
            + KL    ET   ++  +    GG+L        DR+    V + Y SE         I
Sbjct: 109 NIIKLKEIFETPTEISLVLELVTGGELF-------DRI----VEKGYYSERDAADAVKQI 157

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSG---HVTLTDFDLSR 173
           + A+ +LH  GI +RDLKPEN+L         + + DF LS+
Sbjct: 158 LEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSK 199

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK-NRKETF 297
            ++     +  GT  Y +PE++RG  +   VD W++GI+TY +L G  PF  +   +  F
Sbjct: 201 VEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMF 260

Query: 298 RNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
           R +L     F+          A  DL+++L+  DP KRL       +  +H +  G
Sbjct: 261 RRILNCEYYFISPWWDEVSLNAK-DLVRKLIVLDPKKRL----TTFQALQHPWVTG 311

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 90.6 bits (225), Expect = 6e-20
 Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 7/170 (4%)

Query: 3   ATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA 62
                + +    + + +      LG G  G V +              A+K++++  + +
Sbjct: 1   GPMAEKQKHDGRVKIGHYILGDTLGVGTFGKVKV----GKHELTGHKVAVKILNRQKIRS 56

Query: 63  KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVF 122
                +  R EI+ L    HP + KL   + T   +   + Y  GG+L    Y   +   
Sbjct: 57  LDVVGKIRR-EIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGEL--FDYICKNGRL 113

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS 172
                R    +I+  +++ H   + +RDLKPEN+L+    +  + DF LS
Sbjct: 114 DEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS 163

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 76.0 bits (187), Expect = 4e-15
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 21/166 (12%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
             +GE   +  G+  Y +PEV+ G    G E  VD W+ G++ Y +L GT PF   +   
Sbjct: 166 MSDGEFLRTSCGSPNYAAPEVISGRLYAGPE--VDIWSSGVILYALLCGTLPFDDDHVPT 223

Query: 296 TFRNVLM---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL 352
            F+ +      TP+++    ++  L++ +L+ DP+KR        +I+EH +FK      
Sbjct: 224 LFKKICDGIFYTPQYLN--PSVISLLKHMLQVDPMKRATIK----DIREHEWFK----QD 273

Query: 353 LTDVLRPP---FIPSREENDLTEKAMSGGGVDIREYFENLRAPPPS 395
           L   L P    +  +  +++  ++          E    L      
Sbjct: 274 LPKYLFPEDPSYSSTMIDDEALKEVCEKFECSEEEVLSCLYNRNHQ 319

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 22/175 (12%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA 66
           P+P+     D   L   ++LG G  G V     R          ALK++  S        
Sbjct: 19  PEPKKYAVTDDYQLSK-QVLGLGVNGKVLECFHRRT----GQKCALKLLYDS-------- 65

Query: 67  ERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWAV----PYCPGGDLNVLRYKQNDRV 121
             +AR E+    + S  P +  +L   E        +        GG+L     ++ D+ 
Sbjct: 66  -PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQA 124

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSR 173
           F+       + +I  AI+ LH+  IA+RD+KPEN+L     +   + LTDF  ++
Sbjct: 125 FTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK 179

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 12/102 (11%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET-- 296
                   +   T  YV+PEV+  + ++ + D W+LG++ Y +L G  PF     +    
Sbjct: 181 TTQNALQ-TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISP 239

Query: 297 --FRNVLMKTPEFVGQ------RTALTDLIQRLLEKDPVKRL 330
              R + +    F           A   LI+ LL+ DP +RL
Sbjct: 240 GMKRRIRLGQYGFPNPEWSEVSEDAK-QLIRLLLKTDPTERL 280

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 19/155 (12%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           + +G G+         +A        FA+K++DKS        +R    EI +L R   H
Sbjct: 28  EDIGVGSYSVCKRCIHKAT----NMEFAVKIIDKS--------KRDPTEEIEILLRYGQH 75

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P +  L    +  +++        GG+L  L      + FS       L  I   +E+LH
Sbjct: 76  PNIITLKDVYDDGKYVYVVTELMKGGEL--LDKILRQKFFSEREASAVLFTITKTVEYLH 133

Query: 143 NMGIAYRDLKPENILIR----QSGHVTLTDFDLSR 173
             G+ +RDLKP NIL          + + DF  ++
Sbjct: 134 AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAK 168

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK---NRKETFRNVLMKT 304
              T  +V+PEV+   G++ A D W+LG+L Y ML G TPF        +E    +    
Sbjct: 180 PCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGK 239

Query: 305 PEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
               G        TA  DL+ ++L  DP +RL     A  +  H +   
Sbjct: 240 FSLSGGYWNSVSDTAK-DLVSKMLHVDPHQRL----TAALVLRHPWIVH 283

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 86.6 bits (215), Expect = 4e-19
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 9   PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
           P+       ++LK L  +G+GA G+V  +  +   P+ +   A+K +         + ++
Sbjct: 13  PEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHK---PSGQ-IMAVKRIR---STVDEKEQK 65

Query: 69  RARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLR--YKQNDRVFSPS 125
           +   ++ V+ R S  P++ +  G+L  +      +           +  Y   D V    
Sbjct: 66  QLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEE 125

Query: 126 VIRFYLSEIICAIEHLH-NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           ++       + A+ HL  N+ I +RD+KP NIL+ +SG++ L DF +S  LV   A
Sbjct: 126 ILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA 181

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 62/182 (34%)

Query: 246 NSFVGTEEYVSPEVV----RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
               G   Y++PE +       G++   D W+LGI  YE+  G  P+   N   +  + L
Sbjct: 183 TRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN---SVFDQL 239

Query: 302 MK-----------------TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
            +                 +P F+       + +   L KD  KR  Y            
Sbjct: 240 TQVVKGDPPQLSNSEEREFSPSFI-------NFVNLCLTKDESKRPKY------------ 280

Query: 345 FKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSP 404
                 +LL      PFI                 V++  Y   +    P+ P SP+   
Sbjct: 281 -----KELLKH----PFI----------LMYEERAVEVACYVCKILDQMPATPSSPMYVD 321

Query: 405 SH 406
            H
Sbjct: 322 HH 323

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 86.6 bits (215), Expect = 4e-19
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           + LG+G+ G V L    A     +   ALK + +  L       R  R EI  L  L HP
Sbjct: 15  ETLGEGSFGKVKL----ATHYKTQQKVALKFISRQLLKKSDMHMRVER-EISYLKLLRHP 69

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
            + KL   + T   +   + Y  GG+L    Y    +  +    R +  +IICAIE+ H 
Sbjct: 70  HIIKLYDVITTPTDIVMVIEYA-GGEL--FDYIVEKKRMTEDEGRRFFQQIICAIEYCHR 126

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
             I +RDLKPEN+L+  + +V + DF LS N++    F
Sbjct: 127 HKIVHRDLKPENLLLDDNLNVKIADFGLS-NIMTDGNF 163

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 76.9 bits (190), Expect = 9e-16
 Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
             +G    +  G+  Y +PEV+ G    G E  VD W+ GI+ Y ML G  PF  +    
Sbjct: 158 MTDGNFLKTSCGSPNYAAPEVINGKLYAGPE--VDVWSCGIVLYVMLVGRLPFDDEFIPN 215

Query: 296 TFRNVLM---KTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL 352
            F+ V       P+F+        LI+R++  DP++R+       EI+   +F       
Sbjct: 216 LFKKVNSCVYVMPDFLS--PGAQSLIRRMIVADPMQRITIQ----EIRRDPWFNVN---- 265

Query: 353 LTDVLRPPFIPSREEND--LTEKAMSGGGVDIREYFENLRAPPPS 395
           L D LRP         D  +  K     G       E LR+   +
Sbjct: 266 LPDYLRPMEEVQGSYADSRIVSKLGEAMGFSEDYIVEALRSDENN 310

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 86.3 bits (214), Expect = 5e-19
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ LG+G+ G+V+    +          A+K V    + +  +   +   EI ++ +   
Sbjct: 34  LEKLGEGSYGSVYKAIHKETGQIV----AIKQVP---VESDLQEIIK---EISIMQQCDS 83

Query: 83  PFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           P + K  GS   +  L W V  YC  G ++ +  +  ++  +   I   L   +  +E+L
Sbjct: 84  PHVVKYYGSYFKNTDL-WIVMEYCGAGSVSDI-IRLRNKTLTEDEIATILQSTLKGLEYL 141

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDF----DLSRNLVKKTAF 181
           H M   +RD+K  NIL+   GH  L DF     L+  + K+   
Sbjct: 142 HFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV 185

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLM 302
           + N+ +GT  +++PEV++  G+    D W+LGI   EM  G  P+   +  +  F     
Sbjct: 181 KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTN 240

Query: 303 KTPEFVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
             P F          TD +++ L K P +R      A ++ +H F +  +
Sbjct: 241 PPPTFRKPELWSDNFTDFVKQCLVKSPEQRA----TATQLLQHPFVRSAK 286

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 85.1 bits (211), Expect = 7e-19
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 20  LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR 79
           LK    +G+G+  TV+    +  D       A   +            +R + E  +L  
Sbjct: 28  LKFDIEIGRGSFKTVY----KGLDTETTVEVAWCELQDR--KLTKSERQRFKEEAEMLKG 81

Query: 80  LSHPFLPKLLGS----LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
           L HP + +   S    ++  + +         G L    Y +  +V    V+R +  +I+
Sbjct: 82  LQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLK--TYLKRFKVMKIKVLRSWCRQIL 139

Query: 136 CAIEHLHNMG--IAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTA 180
             ++ LH     I +RDLK +NI I   +G V + D  L+       A
Sbjct: 140 KGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA 187

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 20/110 (18%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRN 299
               + + +GT E+++PE+   + ++ +VD +A G+   EM     P+   +N  + +R 
Sbjct: 183 RASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRR 241

Query: 300 VLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           V          +     + ++I+  + ++  +R        ++  H FF+
Sbjct: 242 VTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERY----SIKDLLNHAFFQ 287

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 60/328 (18%), Positives = 104/328 (31%), Gaps = 90/328 (27%)

Query: 16  DLDNLKALKILGKGAMGTVFL------VHDRAADPTARCPFALKVVDKSTLHAKHEAERR 69
               +   + +G G+ GTV+       V             A+K+++ +    +     +
Sbjct: 22  PDGQITVGQRIGSGSFGTVYKGKWHGDV-------------AVKMLNVTAPTPQQLQAFK 68

Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIR 128
              E+ VL +  H  +   +G   T   LA    +C G  L + L    ++  F    + 
Sbjct: 69  N--EVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLH--ASETKFEMKKLI 123

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
               +    +++LH   I +RDLK  NI + +   V + DF L+    K           
Sbjct: 124 DIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLAT--EKSRWSGSHQFEQ 181

Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
               +                W+ A PE               V R Q S     +S   
Sbjct: 182 LSGSI---------------LWM-A-PE---------------VIRMQDSNPYSFQS--- 206

Query: 249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF-----RNVLMK 303
                                D +A GI+ YE++ G  P+   N ++       R  L  
Sbjct: 207 ---------------------DVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSP 245

Query: 304 TPEFVGQRT--ALTDLIQRLLEKDPVKR 329
               V       +  L+   L+K   +R
Sbjct: 246 DLSKVRSNCPKRMKRLMAECLKKKRDER 273

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 83.6 bits (207), Expect = 4e-18
 Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 17/169 (10%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
             L +   +G+G+ G V L  ++ +        A+K++D      K +       E+ ++
Sbjct: 45  LLLDSYVKIGEGSTGIVCLAREKHSGRQV----AVKMMDLR----KQQRRELLFNEVVIM 96

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
               H  + ++  S    E L W +  +  GG L  +   Q     +   I      ++ 
Sbjct: 97  RDYQHFNVVEMYKSYLVGEEL-WVLMEFLQGGALTDI-VSQV--RLNEEQIATVCEAVLQ 152

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF----DLSRNLVKKTAF 181
           A+ +LH  G+ +RD+K ++IL+   G V L+DF     +S+++ K+ + 
Sbjct: 153 ALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSL 201

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM 302
           +  S VGT  +++PEV+    +   VD W+LGI+  EM+ G  P+   +  +   R    
Sbjct: 197 KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDS 256

Query: 303 KTPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
             P+          L D ++R+L +DP +R      A E+ +H F  
Sbjct: 257 PPPKLKNSHKVSPVLRDFLERMLVRDPQERA----TAQELLDHPFLL 299

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 82.7 bits (205), Expect = 5e-18
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  D+L+ +  LG+GA G V  +      P+ +   A+K +         + ++R   ++
Sbjct: 4   VKADDLEPIMELGRGAYGVVEKMRHV---PSGQ-IMAVKRIR---ATVNSQEQKRLLMDL 56

Query: 75  RVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLS 132
            +  R    PF     G+L  +  +   +           +      +     ++     
Sbjct: 57  DISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAV 116

Query: 133 EIICAIEHLH-NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
            I+ A+EHLH  + + +RD+KP N+LI   G V + DF +S  LV   A
Sbjct: 117 SIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVA 165

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 32/119 (26%)

Query: 246 NSFVGTEEYVSPEVVRGDGHE----FAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           +   G + Y++PE +  + ++       D W+LGI   E+     P+       T    L
Sbjct: 167 DIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG---TPFQQL 223

Query: 302 MK--------------TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            +              + EFV       D   + L+K+  +R  Y     E+ +H FF 
Sbjct: 224 KQVVEEPSPQLPADKFSAEFV-------DFTSQCLKKNSKERPTYP----ELMQHPFFT 271

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 54/320 (16%), Positives = 104/320 (32%), Gaps = 69/320 (21%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
             + L+  +++GKG  G V+               A++++D    +       +   E+ 
Sbjct: 31  PFEQLEIGELIGKGRFGQVY----HG---RWHGEVAIRLIDIERDNEDQLKAFKR--EVM 81

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEI 134
              +  H  +   +G+  +   LA     C G  L +V+R      V   +  R    EI
Sbjct: 82  AYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVR--DAKIVLDVNKTRQIAQEI 139

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
           +  + +LH  GI ++DLK +N+    +G V +TDF L    +       +  +  +    
Sbjct: 140 VKGMGYLHAKGILHKDLKSKNVFY-DNGKVVITDFGLFS--ISGVLQAGRREDKLRIQ-- 194

Query: 195 PVTENPKRHRRILTRWLHAL-PENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                          WL  L PE    L         P S+                   
Sbjct: 195 -------------NGWLCHLAPEIIRQLSPDTEEDKLPFSK------------------- 222

Query: 254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF----RNVLMKTPEFVG 309
                           D +ALG + YE+     PF+ +  +         +     +   
Sbjct: 223 --------------HSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGM 268

Query: 310 QRTALTDLIQRLLEKDPVKR 329
            +  ++D++      +  +R
Sbjct: 269 GK-EISDILLFCWAFEQEER 287

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 82.8 bits (205), Expect = 6e-18
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 21/166 (12%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEI 74
           D   ++  +++G+GA G V     RA D       A+K +       + E+ER+A   E+
Sbjct: 6   DYKEIEVEEVVGRGAFGVVCKAKWRAKD------VAIKQI-------ESESERKAFIVEL 52

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           R LSR++HP + KL G+      +   + Y  GG L NVL   +    ++ +    +  +
Sbjct: 53  RQLSRVNHPNIVKLYGA--CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQ 110

Query: 134 IICAIEHLHNM---GIAYRDLKPENILIRQSGHVT-LTDFDLSRNL 175
               + +LH+M    + +RDLKP N+L+   G V  + DF  + ++
Sbjct: 111 CSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI 156

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
              +L   + +G G+ GTV       +D       A+K++ +   HA+   E     E+ 
Sbjct: 35  PWCDLNIKEKIGAGSFGTVHRAEWHGSD------VAVKILMEQDFHAERVNEFLR--EVA 86

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEI 134
           ++ RL HP +   +G++     L+    Y   G L  +L                   ++
Sbjct: 87  IMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDV 146

Query: 135 ICAIEHLHNMG--IAYRDLKPENILIRQSGHVTLTDFDLSR 173
              + +LHN    I +R+LK  N+L+ +   V + DF LSR
Sbjct: 147 AKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR 187

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 15/106 (14%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK 291
           +SR +        S S  GT E+++PEV+R +      D ++ G++ +E+     P+   
Sbjct: 185 LSRLKA--STFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL 242

Query: 292 NRKETFRNVLMKTPEFVGQR--------TALTDLIQRLLEKDPVKR 329
           N  +    V  K      +R          +  +I+     +P KR
Sbjct: 243 NPAQVVAAVGFK-----CKRLEIPRNLNPQVAAIIEGCWTNEPWKR 283

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 84.5 bits (209), Expect = 8e-18
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 20/157 (12%)

Query: 26  LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE--RRARWEIRVLSRLSHP 83
           +  G +G ++L  DR  +   R P  LK      L    +AE    A  E + L+ + HP
Sbjct: 88  IAHGGLGWIYLALDRNVN--GR-PVVLKG-----LVHSGDAEAQAMAMAERQFLAEVVHP 139

Query: 84  FLPKLLGSLETDEFLAWAVPY-----CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
            + ++   +E  +     V Y       G  L   +     +    +    YL EI+ A+
Sbjct: 140 SIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSK----GQKLPVAEAIAYLLEILPAL 195

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            +LH++G+ Y DLKPENI++ +   + L D      +
Sbjct: 196 SYLHSIGLVYNDLKPENIMLTEEQ-LKLIDLGAVSRI 231

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
                 GT  + +PE+VR  G   A D + +G     +        G+         L +
Sbjct: 233 SFGYLYGTPGFQAPEIVRT-GPTVATDIYTVGRTLAALTLDLPTRNGRYVDG-----LPE 286

Query: 304 TPEFVGQRTALTDLIQRLLEKDPVKR 329
               +    +   L++R ++ DP +R
Sbjct: 287 DDPVLKTYDSYGRLLRRAIDPDPRQR 312

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 83.6 bits (207), Expect = 8e-18
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 34/191 (17%)

Query: 4   TPPPQPQTTPSLDLDNLKALK-------------ILGKGAMGTVFLVHDRAADPTARCPF 50
            PPP PQ  P   + +   +K             +LG G  G V  + ++      +  F
Sbjct: 35  PPPPPPQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRT----QEKF 90

Query: 51  ALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWAV----PYC 105
           ALK++             +AR E+ +  R S  P + +++   E        +       
Sbjct: 91  ALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL 141

Query: 106 PGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSG 162
            GG+L      + D+ F+       +  I  AI++LH++ IA+RD+KPEN+L    R + 
Sbjct: 142 DGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 201

Query: 163 HVTLTDFDLSR 173
            + LTDF  ++
Sbjct: 202 ILKLTDFGFAK 212

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET-- 296
             +     +   T  YV+PEV+  + ++ + D W+LG++ Y +L G  PF   +      
Sbjct: 214 TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP 273

Query: 297 --FRNVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRL 330
                + M   EF           +  LI+ LL+ +P +R+
Sbjct: 274 GMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM 314

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 82.8 bits (205), Expect = 8e-18
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 29/195 (14%)

Query: 6   PPQPQTTPSLDLDNLK-------ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKS 58
               ++   +DL  L+        ++++G G  G V+          A    A+KV+D  
Sbjct: 5   DSPARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLA----AIKVMD-- 58

Query: 59  TLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGS------LETDEFLAWAV-PYCPGGDL 110
                 + E   + EI +L + S H  +    G+         D+ L W V  +C  G +
Sbjct: 59  ---VTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQL-WLVMEFCGAGSV 114

Query: 111 NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF- 169
             L             I +   EI+  + HLH   + +RD+K +N+L+ ++  V L DF 
Sbjct: 115 TDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFG 174

Query: 170 ---DLSRNLVKKTAF 181
               L R + ++  F
Sbjct: 175 VSAQLDRTVGRRNTF 189

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 244 RSNSFVGTEEYVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETF 297
           R N+F+GT  +++PEV+  D      ++F  D W+LGI   EM  G  P    +  +  F
Sbjct: 185 RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALF 244

Query: 298 RNVLMKTPEFVGQR--TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR-----W 350
                  P    ++        I+  L K+  +R        ++ +H F +         
Sbjct: 245 LIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRP----ATEQLMKHPFIRDQPNERQVR 300

Query: 351 DLLTDVLRPPFIPSREENDLTEKAMSG 377
             L D +       R E D TE   SG
Sbjct: 301 IQLKDHIDRT-KKKRGEKDETEYEYSG 326

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 23  LKILGKGAM--GTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           L ++GKG     TV L   +           ++ ++       +E     + E+ V    
Sbjct: 30  LTVIGKGFEDLMTVNLARYKPTGEYV----TVRRINLE--ACSNEMVTFLQGELHVSKLF 83

Query: 81  SHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           +HP +     +   D  L W V  +   G    L         +   I + L  ++ A++
Sbjct: 84  NHPNIVPYRATFIADNEL-WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALD 142

Query: 140 HLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
           ++H+MG  +R +K  +ILI   G V L+  
Sbjct: 143 YIHHMGYVHRSVKASHILISVDGKVYLSGL 172

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 64/200 (32%)

Query: 237 QSFDNGERSNS-------FVGTEEYVSPEVVR--GDGHEFAVDWWALGILTYEMLYGTTP 287
               +G+R           V    ++SPEV++    G++   D +++GI   E+  G  P
Sbjct: 177 SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP 236

Query: 288 F--------------------------------------------RGKNRKETFRNVLMK 303
           F                                                   T R     
Sbjct: 237 FKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGD 296

Query: 304 TPEFVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR---WDLLTDVL 357
           +P     RT        +++ L+++P  R      A  +  H FFK ++    + L ++L
Sbjct: 297 SPSHPYHRTFSPHFHHFVEQCLQRNPDARP----SASTLLNHSFFKQIKRRASEALPELL 352

Query: 358 RPPFIPSREENDLTEKAMSG 377
           R P  P         +  SG
Sbjct: 353 R-PVTPITNFEGSQSQDHSG 371

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 19/165 (11%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            + +G+GA GTV+   D A         A++ ++      +   +     EI V+    +
Sbjct: 25  FEKIGQGASGTVYTAMDVATGQEV----AIRQMNLQ----QQPKKELIINEILVMRENKN 76

Query: 83  PFLPKLLGSLETDEFLAWAV-PYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
           P +   L S    + L W V  Y  GG L +V+     +       I     E + A+E 
Sbjct: 77  PNIVNYLDSYLVGDEL-WVVMEYLAGGSLTDVVT----ETCMDEGQIAAVCRECLQALEF 131

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDF----DLSRNLVKKTAF 181
           LH+  + +RD+K +NIL+   G V LTDF     ++    K++  
Sbjct: 132 LHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM 176

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM 302
           + ++ VGT  +++PEVV    +   VD W+LGI+  EM+ G  P+  +N  +  +     
Sbjct: 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 231

Query: 303 KTPEFVGQR---TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            TPE            D + R LE D  KR      A E+ +H F K
Sbjct: 232 GTPELQNPEKLSAIFRDFLNRCLEMDVEKRG----SAKELLQHQFLK 274

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           ++LG G  G V  + ++      +  FALK++            RR   E+ +  R S  
Sbjct: 24  QVLGLGINGKVLQIFNKRT----QEKFALKMLQDC------PKARR---EVELHWRASQC 70

Query: 83  PFLPKLLGSLETDEFLAWAV----PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +++   E        +        GG+L      + D+ F+       +  I  AI
Sbjct: 71  PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 130

Query: 139 EHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSRNLVKK 178
           ++LH++ IA+RD+KPEN+L      +  + LTDF  ++    +
Sbjct: 131 QYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGE 173

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET----FRNVLMKTPEFVGQ-- 310
            E      ++ + D W+LG++ Y +L G  PF   +           + M   EF     
Sbjct: 168 KETTGE-KYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEW 226

Query: 311 ----RTALTDLIQRLLEKDPVKRL 330
                     LI+ LL+ +P +R+
Sbjct: 227 SEVSEEV-KMLIRNLLKTEPTQRM 249

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 14/170 (8%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D   L  L  L +   G ++    +  D        +KV+       +   +     E  
Sbjct: 8   DFKQLNFLTKLNENHSGELWKGRWQGND------IVVKVLKVRDWSTRKSRDFNE--ECP 59

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAV--PYCPGGDL-NVLRYKQNDRVFSPSVIRFYLS 132
            L   SHP +  +LG+ ++       +   + P G L NVL  +  + V   S    +  
Sbjct: 60  RLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLH-EGTNFVVDQSQAVKFAL 118

Query: 133 EIICAIEHLHNMG--IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
           ++   +  LH +   I    L   +++I +     ++  D+  +      
Sbjct: 119 DMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGR 168

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 16/96 (16%)

Query: 245 SNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
           S   +    +V+PE ++    D +  + D W+  +L +E++    PF   +  E    V 
Sbjct: 165 SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVA 224

Query: 302 MKTPEFVGQR--------TALTDLIQRLLEKDPVKR 329
           ++     G R          ++ L++  + +DP KR
Sbjct: 225 LE-----GLRPTIPPGISPHVSKLMKICMNEDPAKR 255

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 31/182 (17%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           L  + ++  K +GKG  G V     +      +   A+K +       + E   + +   
Sbjct: 16  LADNEIEYEKQIGKGGFGLVH----KGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQ 71

Query: 73  -EIRVLSRLSHPFLPKLLGSLETDEFLAWAVP------YCPGGDL-NVLRYKQNDRVFSP 124
            E+ ++S L+HP + KL G            P      + P GDL + L           
Sbjct: 72  REVFIMSNLNHPNIVKLYG--------LMHNPPRMVMEFVPCGDLYHRLL--DKAHPIKW 121

Query: 125 SVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSG-----HVTLTDFDLSRNLVK 177
           SV    + +I   IE++ N    I +RDL+  NI ++           + DF LS+  V 
Sbjct: 122 SVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH 181

Query: 178 KT 179
             
Sbjct: 182 SV 183

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGDGHEF--AVDWWALGILTYEMLYGTTPFRGKNRKE 295
           S  +    +  +G  ++++PE +  +   +    D ++  ++ Y +L G  PF   +  +
Sbjct: 176 SQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGK 235

Query: 296 TFRNVLMKTPEFVGQRT-----------ALTDLIQRLLEKDPVKR 329
                 +K    + +              L ++I+     DP KR
Sbjct: 236 ------IKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKR 274

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 76.4 bits (189), Expect = 9e-16
 Identities = 77/388 (19%), Positives = 127/388 (32%), Gaps = 118/388 (30%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWE 73
           ++  + +  +G+G+ G VF   +R    T +   A+K           +     + A  E
Sbjct: 2   MEKYEKIGKIGEGSYGVVFKCRNRD---TGQI-VAIKKF-----LESEDDPVIKKIALRE 52

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLS 132
           IR+L +L HP L  LL        L     YC   D  VL    +  R     +++    
Sbjct: 53  IRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYC---DHTVLHELDRYQRGVPEHLVKSITW 109

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           + + A+   H     +RD+KPENILI +   + L DF  +R L                P
Sbjct: 110 QTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLL--------------TGP 155

Query: 193 VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                +       + TRW                                          
Sbjct: 156 SDYYDD------EVATRW------------------------------------------ 167

Query: 253 EYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKE----TFR--------- 298
            Y SPE++ GD      VD WA+G +  E+L G   + GK+  +      +         
Sbjct: 168 -YRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRH 226

Query: 299 -NVLMKTPEFVGQR------------------TALTDLIQRLLEKDPVKRLGYLRGACEI 339
             V      F G +                       L++  L  DP +RL       ++
Sbjct: 227 QQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERL----TCEQL 282

Query: 340 KEHVFFKGVRWDLLTDVLRPPFIPSREE 367
             H +F+ +R   + D+ +    P+   
Sbjct: 283 LHHPYFENIR--EIEDLAKEHDKPAENL 308

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           +  LG G M TV+L  D   +       A+K +       K E  +R   E+   S+LSH
Sbjct: 16  VDKLGGGGMSTVYLAEDTILN---I-KVAIKAI-FIPPREKEETLKRFEREVHNSSQLSH 70

Query: 83  PFLPKLL--GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
             +  ++     +   +L   + Y  G  L+   Y ++    S      + ++I+  I+H
Sbjct: 71  QNIVSMIDVDEEDDCYYLV--MEYIEGPTLS--EYIESHGPLSVDTAINFTNQILDGIKH 126

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            H+M I +RD+KP+NILI  +  + + DF +++
Sbjct: 127 AHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAK 159

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           ++N  +GT +Y SPE  +G+  +   D +++GI+ YEML G  PF G    ET  ++ +K
Sbjct: 168 QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNG----ETAVSIAIK 223

Query: 304 -----TPEFVGQRT-----ALTDLIQRLLEKDPVKR 329
                 P            +L+++I R  EKD   R
Sbjct: 224 HIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANR 259

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 28/193 (14%)

Query: 9   PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
           P          +   + +GKG  G V+    R  +       A+K+       ++ E   
Sbjct: 33  PLLVQRTIARTIVLQESIGKGRFGEVWRGKWRGEE------VAVKI-----FSSREERSW 81

Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLA---WAV-PYCPGGDL-NVLRYKQNDRVFS 123
               EI     L H  +   + +   D       W V  Y   G L + L          
Sbjct: 82  FREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTV--- 138

Query: 124 PSVIRFYLSEIICAIEHLH--------NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             +I+  LS     + HLH           IA+RDLK +NIL++++G   + D  L+   
Sbjct: 139 EGMIKLALS-TASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 197

Query: 176 VKKTAFEKQSLNN 188
              T     + N+
Sbjct: 198 DSATDTIDIAPNH 210

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 1   MEATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL 60
           M+ T   +  T         +  +++G+G MG V+     A D       ALK++   TL
Sbjct: 21  MDGTAESREGTQ----FGPYRLRRLVGRGGMGDVY----EAEDTVRERIVALKLM-SETL 71

Query: 61  HAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
            +      R + E R   RL  P +  +    E D  L   +    G DL      +   
Sbjct: 72  SSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLA--AMLRRQG 129

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             +P      + +I  A++  H  G  +RD+KPENIL+       L DF ++ 
Sbjct: 130 PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIAS 182

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           +  + VGT  Y++PE        +  D +AL  + YE L G+ P++G        + + +
Sbjct: 191 QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAH-INQ 249

Query: 304 TPEFVGQR-----TALTDLIQRLLEKDPVKR 329
                         A   +I R + K+P  R
Sbjct: 250 AIPRPSTVRPGIPVAFDAVIARGMAKNPEDR 280

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 34/200 (17%)

Query: 6   PPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARC---PFALKVVDKSTLHA 62
              P          ++ +K +GKG  G V++          +      A+KV        
Sbjct: 25  SGLPLLVQRTIAKQIQMVKQIGKGRYGEVWM---------GKWRGEKVAVKV-----FFT 70

Query: 63  KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA---WAV-PYCPGGDL-NVLRYKQ 117
             EA      EI     + H  +   + +           + +  Y   G L + L+   
Sbjct: 71  TEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTT 130

Query: 118 NDRVFSPSVIRFYLSEIICAIEHLH--------NMGIAYRDLKPENILIRQSGHVTLTDF 169
            D     S+++   S  +  + HLH           IA+RDLK +NIL++++G   + D 
Sbjct: 131 LDA---KSMLKLAYS-SVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADL 186

Query: 170 DLSRNLVKKTAFEKQSLNNN 189
            L+   +  T       N  
Sbjct: 187 GLAVKFISDTNEVDIPPNTR 206

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 79/371 (21%), Positives = 131/371 (35%), Gaps = 127/371 (34%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER-------- 68
           ++    L+ +G+G  G V+    +A +      FALK +       + E E         
Sbjct: 1   MEKYHGLEKIGEGTYGVVY----KAQNNYGET-FALKKI-------RLEKEDEGIPSTTI 48

Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           R   EI +L  L H  + KL   + T + L     +    DL  L     +        +
Sbjct: 49  R---EISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKL-LDVCEGGLESVTAK 103

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
            +L +++  I + H+  + +RDLKP+N+LI + G + + DF L+R      AF       
Sbjct: 104 SFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR------AF------- 150

Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
              PV   T        I+T W                                      
Sbjct: 151 -GIPVRKYTH------EIVTLW-------------------------------------- 165

Query: 249 VGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKET----FRNVLMK 303
                Y +P+V+ G       +D W++G +  EM+ GT  F G +  +     FR  ++ 
Sbjct: 166 -----YRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR--ILG 218

Query: 304 TP----------------EFVGQR--------TALT----DLIQRLLEKDPVKRLGYLRG 335
           TP                 F              L     DL+ ++L+ DP +R+     
Sbjct: 219 TPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRI----T 274

Query: 336 ACEIKEHVFFK 346
           A +  EH +FK
Sbjct: 275 AKQALEHAYFK 285

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 73/369 (19%), Positives = 129/369 (34%), Gaps = 122/369 (33%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
              K++G G+ G VF         +     A+K V         +   + R E++++  +
Sbjct: 43  TNCKVIGNGSFGVVFQAKLV---ESDE--VAIKKV-------LQDKRFKNR-ELQIMRIV 89

Query: 81  SHPFLPKLL------GSLETDEFLAWAVPYCPGGDL-NVLR-YKQNDRVFSPSVIRFYLS 132
            HP +  L       G  + + FL   + Y P   +    R Y +  +     +I+ Y+ 
Sbjct: 90  KHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMY 148

Query: 133 EIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
           +++ ++ ++H++GI +RD+KP+N+L+   SG + L DF  ++ L+               
Sbjct: 149 QLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILI--------------- 193

Query: 192 PVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT 251
              P          I +R+  A PE                                 G 
Sbjct: 194 AGEPNVS------YICSRYYRA-PEL------------------------------IFGA 216

Query: 252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN---------------RKET 296
             Y +            +D W+ G +  E++ G   F G++                +E 
Sbjct: 217 TNYTT-----------NIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQ 265

Query: 297 FRNVL-----MKTPEFVGQR-----------TALTDLIQRLLEKDPVKRLGYLRGACEIK 340
            + +       K P+                 A+ DLI RLLE  P  RL     A E  
Sbjct: 266 IKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAI-DLISRLLEYTPSARL----TAIEAL 320

Query: 341 EHVFFKGVR 349
            H FF  +R
Sbjct: 321 CHPFFDELR 329

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 69/368 (18%), Positives = 123/368 (33%), Gaps = 119/368 (32%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
              K++G G+ G V+         +     A+K V         +   + R E++++ +L
Sbjct: 57  TDTKVIGNGSFGVVYQAKLC---DSGE-LVAIKKV-------LQDKRFKNR-ELQIMRKL 104

Query: 81  SHPFLPKLL------GSLETDEFLAWAVPYCPGGDL-NVLR-YKQNDRVFSPSVIRFYLS 132
            H  + +L       G  + + +L   + Y P   +  V R Y +  +      ++ Y+ 
Sbjct: 105 DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMY 163

Query: 133 EIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
           ++  ++ ++H+ GI +RD+KP+N+L+   +  + L DF  ++ LV               
Sbjct: 164 QLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLV--------------- 208

Query: 192 PVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT 251
              P          I +R+  A PE                                 G 
Sbjct: 209 RGEPNVS------YICSRYYRA-PEL------------------------------IFGA 231

Query: 252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN---------------RKET 296
            +Y S           ++D W+ G +  E+L G   F G +                +E 
Sbjct: 232 TDYTS-----------SIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQ 280

Query: 297 FRNVL-----MKTPEFVGQRTALT----------DLIQRLLEKDPVKRLGYLRGACEIKE 341
            R +       K P+                    L  RLLE  P  RL       E   
Sbjct: 281 IREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL----TPLEACA 336

Query: 342 HVFFKGVR 349
           H FF  +R
Sbjct: 337 HSFFDELR 344

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 36/174 (20%), Positives = 54/174 (31%), Gaps = 17/174 (9%)

Query: 1   MEATPPPQPQTTPSLDLDN----LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD 56
             + PP   Q  P   + N    L      G       +   D A D   R   AL  VD
Sbjct: 12  ESSAPPDDVQLVPGARIANGRYRLLIF--HGGVPPLQFWQALDTALD---R-QVALTFVD 65

Query: 57  KSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY 115
              +      +         LSR+  P + ++L  + T       V  +  GG L  +  
Sbjct: 66  PQGVLPDDVLQETLS-RTLRLSRIDKPGVARVLDVVHTRA-GGLVVAEWIRGGSLQEVA- 122

Query: 116 KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
              D   SP      +  +  A +  H  G+A     P  + +   G V L   
Sbjct: 123 ---DTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYP 173

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 8/70 (11%)

Query: 268 AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV--------GQRTALTDLIQ 319
             D   +G   Y +L    P      +         T                 ++ +  
Sbjct: 182 QDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAA 241

Query: 320 RLLEKDPVKR 329
           R ++ D   R
Sbjct: 242 RSVQGDGGIR 251

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 49/205 (23%), Positives = 75/205 (36%), Gaps = 37/205 (18%)

Query: 1   MEATPPPQPQTTPSLDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKS 58
           MEA         PSLDLDNLK L+++G+G  G V+   + +R        P A+KV    
Sbjct: 1   MEAAASE-----PSLDLDNLKLLELIGRGRYGAVYKGSLDER--------PVAVKV---- 43

Query: 59  TLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA----WAV-PYCPGGDLNVL 113
                +         I  +  + H  + + +   E            V  Y P G L   
Sbjct: 44  -FSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLX-- 100

Query: 114 RYKQNDRVFSPSVIRFYLSEIICAIEHLH---------NMGIAYRDLKPENILIRQSGHV 164
           +Y         S  R   S +   + +LH            I++RDL   N+L++  G  
Sbjct: 101 KYLSLHTSDWVSSCRLAHS-VTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTC 159

Query: 165 TLTDFDLSRNLVKKTAFEKQSLNNN 189
            ++DF LS  L           +N 
Sbjct: 160 VISDFGLSMRLTGNRLVRPGEEDNA 184

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 73.7 bits (182), Expect = 8e-15
 Identities = 81/372 (21%), Positives = 129/372 (34%), Gaps = 128/372 (34%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER-------- 68
           ++  + L+ +G+G  G V+    +A D   R   ALK +       + +AE         
Sbjct: 20  MEKYQKLEKVGEGTYGVVY----KAKDSQGRI-VALKRI-------RLDAEDEGIPSTAI 67

Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           R   EI +L  L HP +  L+  + ++  L     +    DL  +   +N      S I+
Sbjct: 68  R---EISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKV-LDENKTGLQDSQIK 122

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
            YL +++  + H H   I +RDLKP+N+LI   G + L DF L+R      AF       
Sbjct: 123 IYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR------AF------- 169

Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
              PV   T        ++T W                                      
Sbjct: 170 -GIPVRSYTH------EVVTLW-------------------------------------- 184

Query: 249 VGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKE----TFRNVLMK 303
                Y +P+V+ G      +VD W++G +  EM+ G   F G    +     F   ++ 
Sbjct: 185 -----YRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFS--ILG 237

Query: 304 TP-----------------------------EFVGQRTALTDLIQRLLEKDPVKRLGYLR 334
           TP                                G      DL+  +L  DP KR+    
Sbjct: 238 TPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRI---- 293

Query: 335 GACEIKEHVFFK 346
            A +   H +FK
Sbjct: 294 SARDAMNHPYFK 305

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 83/379 (21%), Positives = 126/379 (33%), Gaps = 118/379 (31%)

Query: 6   PPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE 65
               +      ++  + L ++G+G+ G V    ++    T R   A+K           +
Sbjct: 13  DLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKD---TGRI-VAIKKF-----LESDD 63

Query: 66  AE---RRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRV 121
            +   + A  EI++L +L H  L  LL   +  +       +    D  +L   +     
Sbjct: 64  DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFV---DHTILDDLELFPNG 120

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
               V++ YL +II  I   H+  I +RD+KPENIL+ QSG V L DF  +R L      
Sbjct: 121 LDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTL------ 174

Query: 182 EKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN 241
                     P     +       + TRW                               
Sbjct: 175 --------AAPGEVYDD------EVATRW------------------------------- 189

Query: 242 GERSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKET---- 296
                       Y +PE++ GD     AVD WA+G L  EM  G   F G +  +     
Sbjct: 190 ------------YRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHI 237

Query: 297 FRNVL-----------MKTPEFVGQR------------------TALTDLIQRLLEKDPV 327
               L            K P F G R                    + DL ++ L  DP 
Sbjct: 238 MM-CLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPD 296

Query: 328 KRLGYLRGACEIKEHVFFK 346
           KR        E+  H FF+
Sbjct: 297 KRP----FCAELLHHDFFQ 311

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 13/156 (8%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            +ILG G M  V L  D       R   A+KV+ ++ L        R R E +  + L+H
Sbjct: 17  GEILGFGGMSEVHLARDLRDH---R-DVAVKVL-RADLARDPSFYLRFRREAQNAAALNH 71

Query: 83  PFLPKLLGSLETDEFLAWAVPY-----CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           P +  +  + E  E  A  +PY       G  L        +   +P      +++   A
Sbjct: 72  PAIVAVYDTGE-AETPAGPLPYIVMEYVDGVTLR--DIVHTEGPMTPKRAIEVIADACQA 128

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +   H  GI +RD+KP NI+I  +  V + DF ++R
Sbjct: 129 LNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIAR 164

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 13/95 (13%)

Query: 244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK 303
           ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G    ++  +V  +
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG----DSPVSVAYQ 230

Query: 304 ----TPEFVGQRT-----ALTDLIQRLLEKDPVKR 329
                P     R       L  ++ + L K+P  R
Sbjct: 231 HVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 32/170 (18%)

Query: 19  NLKALKILGKGAMGTVFLVHDRAADPTARC---PFALKVVDKSTLHAKHEAERRARWEIR 75
           ++  L+ +GKG  G V+                  A+K+       ++ E       E+ 
Sbjct: 9   DITLLECVGKGRYGEVWR---------GSWQGENVAVKI-----FSSRDEKSWFRETELY 54

Query: 76  VLSRLSHPFLPKLLGSLETDEFLA---WAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
               L H  +   + S  T    +   W +  Y   G L    Y Q   + + S +R  L
Sbjct: 55  NTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLY--DYLQLTTLDTVSCLRIVL 112

Query: 132 SEIICAIEHLH--------NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           S I   + HLH           IA+RDLK +NIL++++G   + D  L+ 
Sbjct: 113 S-IASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV 161

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 67/377 (17%), Positives = 124/377 (32%), Gaps = 130/377 (34%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D+ + ++ LG+G    VF     A + T      +K++       K   +++ + EI++L
Sbjct: 36  DDYQLVRKLGRGKYSEVF----EAINITNNEKVVVKIL-------KPVKKKKIKREIKIL 84

Query: 78  SRLS-HPFLPKLLGSL--ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
             L   P +  L   +        A    +    D   L         +   IRFY+ EI
Sbjct: 85  ENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEI 139

Query: 135 ICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           + A+++ H+MGI +RD+KP N++I  +   + L D+ L+           Q  N      
Sbjct: 140 LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-----FYHPGQEYNV----- 189

Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
                      R+ +R+                                           
Sbjct: 190 -----------RVASRY------------------------------------------- 195

Query: 254 YVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTP-FRGKN------------------- 292
           +  PE++      ++++D W+LG +   M++   P F G +                   
Sbjct: 196 FKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYD 255

Query: 293 --------------------RKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGY 332
                                ++ +   +    + +    AL D + +LL  D   RL  
Sbjct: 256 YIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEAL-DFLDKLLRYDHQSRL-- 312

Query: 333 LRGACEIKEHVFFKGVR 349
              A E  EH +F  V 
Sbjct: 313 --TAREAMEHPYFYTVV 327

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           D   L   +I+G G  G V+       +       A+K           +     R E +
Sbjct: 5   DFAELTLEEIIGIGGFGKVYRAFWIGDE------VAVKAARHDPDEDISQTIENVRQEAK 58

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEI 134
           + + L HP +  L G    +  L   + +  GG L  VL      +   P ++  +  +I
Sbjct: 59  LFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS----GKRIPPDILVNWAVQI 114

Query: 135 ICAIEHLHNMG---IAYRDLKPENILIRQSGH--------VTLTDFDLSR 173
              + +LH+     I +RDLK  NILI Q           + +TDF L+R
Sbjct: 115 ARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR 164

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 31/209 (14%)

Query: 5   PPPQPQTTPS-LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK 63
             P  +  P+  +   LK ++ LG+G  G V L              A+K     +L  +
Sbjct: 7   KKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVK-----SLKPE 61

Query: 64  HEAERRARW--EIRVLSRLSHPFLPKLLG--SLETDEFLAWAVPYCPGGDLNVLRY-KQN 118
                 A    EI +L  L H  + K  G  + +    +   + + P G L    Y  +N
Sbjct: 62  SGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSL--KEYLPKN 119

Query: 119 DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL--- 175
               +      Y  +I   +++L +    +RDL   N+L+     V + DF L++ +   
Sbjct: 120 KNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETD 179

Query: 176 -------------VKKTAFEKQSLNNNKF 191
                        V   A E   L  +KF
Sbjct: 180 KEYYTVKDDRDSPVFWYAPE--CLMQSKF 206

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 26/173 (15%), Positives = 66/173 (38%), Gaps = 28/173 (16%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
                L+ L++  +G  G V+               A+K+        + +   +  +E+
Sbjct: 21  FQSMPLQLLEVKARGRFGCVWKAQLLNEY------VAVKI-----FPIQDKQSWQNEYEV 69

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLA---WAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
             L  + H  + + +G+ +    +    W +  +   G L+   + + + V    +    
Sbjct: 70  YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLS--DFLKANVVSWNELCHIA 127

Query: 131 LSEIICAIEHLH----------NMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            + +   + +LH             I++RD+K +N+L++ +    + DF L+ 
Sbjct: 128 ET-MARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL 179

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 74/399 (18%), Positives = 126/399 (31%), Gaps = 117/399 (29%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTLHAKHEAERRARWEIRVLSRL 80
             +LG+GA G V      A         A+K ++     L A      R   EI++L   
Sbjct: 16  KSLLGEGAYGVVC----SATHKPTGEIVAIKKIEPFDKPLFAL-----RTLREIKILKHF 66

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCP----GGDLN-VLRYKQNDRVFSPSVIRFYLSEII 135
            H  +  +      D F  +   Y        DL+ V+  +      S   I++++ + +
Sbjct: 67  KHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQM----LSDDHIQYFIYQTL 122

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
            A++ LH   + +RDLKP N+LI  +  + + DF L+R + +  A   +           
Sbjct: 123 RAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSG---- 178

Query: 196 VTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV 255
           + E       + TRW                                           Y 
Sbjct: 179 MVEF------VATRW-------------------------------------------YR 189

Query: 256 SPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN---------------------- 292
           +PEV+        A+D W+ G +  E+      F G++                      
Sbjct: 190 APEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLR 249

Query: 293 --RKETFRNVLMKTPEFVGQ----------RTALTDLIQRLLEKDPVKRLGYLRGACEIK 340
                  R  +   P +                + DL+QR+L  DP KR+     A E  
Sbjct: 250 CIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGI-DLLQRMLVFDPAKRI----TAKEAL 304

Query: 341 EHVFFKGVR----WDLLTDVLRPPFIPSREENDLTEKAM 375
           EH + +             +    F     +  LT K +
Sbjct: 305 EHPYLQTYHDPNDEPEGEPIPPSFFEFDHYKEALTTKDL 343

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 83/449 (18%), Positives = 151/449 (33%), Gaps = 154/449 (34%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
           LK +G GA G V      A D       A+K + +   +  HAK     RA  E+ ++  
Sbjct: 67  LKPIGSGAQGIV----CAAYDAVLDRNVAIKKLSRPFQNQTHAK-----RAYRELVLMKC 117

Query: 80  LSHPFLPKLL------GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           ++H  +  LL       +LE  + + + V      +L  +   +         + + L +
Sbjct: 118 VNHKNIISLLNVFTPQKTLEEFQDV-YLVMELMDANLCQVIQME----LDHERMSYLLYQ 172

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           ++C I+HLH+ GI +RDLKP NI+++    + + DF L+R           +   +    
Sbjct: 173 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-----------TAGTSFM-- 219

Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE 253
             +T        ++TR+                                           
Sbjct: 220 --MTPY------VVTRY------------------------------------------- 228

Query: 254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-------------------- 293
           Y +PEV+ G G++  VD W++G +  EM+     F G++                     
Sbjct: 229 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK 288

Query: 294 ---------------------KETFRNVLMKTPEFVGQRTAL--TDLIQRLLEKDPVKRL 330
                                 + F + L        +  A    DL+ ++L  DP KR+
Sbjct: 289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRI 348

Query: 331 GYLRGACEIKEHVFFKGVRWDLLTDVLRPP---FIPSREENDLTEKAMSGGGVDIRE--- 384
                  +  +H +     W    +V  PP   +    +E + T +       + +E   
Sbjct: 349 ----SVDDALQHPYINV--WYDPAEVEAPPPQIYDKQLDEREHTIE-------EWKELIY 395

Query: 385 -----YFENLRAPPPSMPPSPLPSPSHRS 408
                  E  +       PSP  +  + S
Sbjct: 396 KEVMNSEEKTKNGVVKGQPSPSGAAVNSS 424

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 65/397 (16%), Positives = 115/397 (28%), Gaps = 149/397 (37%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS- 81
           ++ +G G  G V            +  +A+KVV ++       +   A+ E  +L ++  
Sbjct: 40  IRKMGDGTFGRVL----LCQHIDNKKYYAVKVV-RNI-KKYTRS---AKIEADILKKIQN 90

Query: 82  -------------------HPFL--PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR 120
                              H  L    L  SL   E +                  +N+ 
Sbjct: 91  DDINNNNIVKYHGKFMYYDHMCLIFEPLGPSLY--EII-----------------TRNNY 131

Query: 121 V-FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
             F    I+ Y  EI+ A+ +L  M + + DLKPENIL                      
Sbjct: 132 NGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENIL---------------------- 169

Query: 180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKT---GLKKTKSARVSPVSRRQ 236
                 L++  F    +T       + +  +       K    G      A         
Sbjct: 170 ------LDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFG-----CA--------- 209

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN---- 292
            +F + +   S + T +Y +PEV+   G + + D W+ G +  E+  G+  FR       
Sbjct: 210 -TFKS-DYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEH 267

Query: 293 ----------------RKETFRNVL---------------------------MKTPEFVG 309
                            + T  N                                   + 
Sbjct: 268 LAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKII 327

Query: 310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           +     D +  +L+ DP  R        E+ +H F +
Sbjct: 328 KHELFCDFLYSILQIDPTLRP----SPAELLKHKFLE 360

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 77/372 (20%), Positives = 132/372 (35%), Gaps = 127/372 (34%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER-------- 68
           +   + L+ +G+G  GTVF   +R          ALK V       + + +         
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIV----ALKRV-------RLDDDDEGVPSSAL 49

Query: 69  RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
           R   EI +L  L H  + +L   L +D+ L     +C   DL    +   +    P +++
Sbjct: 50  R---EICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKY-FDSCNGDLDPEIVK 104

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
            +L +++  +   H+  + +RDLKP+N+LI ++G + L +F L+R      AF       
Sbjct: 105 SFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLAR------AFG------ 152

Query: 189 NKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF 248
              PV   +        ++T W                                      
Sbjct: 153 --IPVRCYSA------EVVTLW-------------------------------------- 166

Query: 249 VGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTP-FRGKNRKE----TFRNVLM 302
                Y  P+V+ G      ++D W+ G +  E+     P F G +  +     FR  L+
Sbjct: 167 -----YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFR--LL 219

Query: 303 KTP------------------------EFVGQRTALT----DLIQRLLEKDPVKRLGYLR 334
            TP                          V     L     DL+Q LL+ +PV+R+    
Sbjct: 220 GTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRI---- 275

Query: 335 GACEIKEHVFFK 346
            A E  +H +F 
Sbjct: 276 SAEEALQHPYFS 287

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 13/155 (8%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE----RRARWEIRVLS 78
           L  LG+G   TV+   D+    T +   A+K   K  L  + EA+    R A  EI++L 
Sbjct: 15  LDFLGEGQFATVYKARDKN---TNQ-IVAIK---KIKLGHRSEAKDGINRTALREIKLLQ 67

Query: 79  RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
            LSHP +  LL +      ++    +    DL V+  K N  V +PS I+ Y+   +  +
Sbjct: 68  ELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVI-IKDNSLVLTPSHIKAYMLMTLQGL 125

Query: 139 EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           E+LH   I +RDLKP N+L+ ++G + L DF L++
Sbjct: 126 EYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAK 160

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 64/356 (17%), Positives = 114/356 (32%), Gaps = 121/356 (33%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALK-VVDKSTLHAKHEAERRARWEIRVLSRLS 81
           LK LG G  G VF     A D       A+K +V       K      A  EI+++ RL 
Sbjct: 16  LKPLGCGGNGLVF----SAVDNDCDKRVAIKKIVLTDPQSVK-----HALREIKIIRRLD 66

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGG-------------DLNVLRYKQNDRVFSPSVIR 128
           H  + K+   L                             DL  +  +           R
Sbjct: 67  HDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGP---LLEEHAR 123

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDLSRNLVKKTAFEKQSLN 187
            ++ +++  ++++H+  + +RDLKP N+ I      + + DF L+R            ++
Sbjct: 124 LFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLAR-----------IMD 172

Query: 188 NNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS 247
            +      ++E       ++T+W                                     
Sbjct: 173 PHYSHKGHLSEG------LVTKW------------------------------------- 189

Query: 248 FVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN-------------- 292
                 Y SP ++    +   A+D WA G +  EML G T F G +              
Sbjct: 190 ------YRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPV 243

Query: 293 -RKETFRNVLMKTPEFVGQR-----------------TALTDLIQRLLEKDPVKRL 330
             +E  + +L   P ++                     A+ D ++++L   P+ RL
Sbjct: 244 VHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAV-DFLEQILTFSPMDRL 298

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 68.4 bits (168), Expect = 5e-13
 Identities = 74/379 (19%), Positives = 122/379 (32%), Gaps = 135/379 (35%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE--------RR 69
              K L+ LG G   TV+   ++          ALK V       K ++E        R 
Sbjct: 5   SQFKQLEKLGNGTYATVYKGLNKTTGVY----VALKEV-------KLDSEEGTPSTAIR- 52

Query: 70  ARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVL----RYKQNDRVFSPS 125
              EI ++  L H  + +L   + T+  L     +    DL             R    +
Sbjct: 53  ---EISLMKELKHENIVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELN 108

Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQS 185
           +++++  +++  +   H   I +RDLKP+N+LI + G + L DF L+R      AF    
Sbjct: 109 LVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLAR------AF---- 158

Query: 186 LNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
                 PV   +        ++T W                                   
Sbjct: 159 ----GIPVNTFSS------EVVTLW----------------------------------- 173

Query: 246 NSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKE----TFRNV 300
                   Y +P+V+ G      ++D W+ G +  EM+ G   F G N +E     F   
Sbjct: 174 --------YRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFD-- 223

Query: 301 LMKTP----------------EFVGQR-----------------TALTDLIQRLLEKDPV 327
           +M TP                    +                    L D +  LL+ +P 
Sbjct: 224 IMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPD 283

Query: 328 KRLGYLRGACEIKEHVFFK 346
            RL     A +   H +F 
Sbjct: 284 MRL----SAKQALHHPWFA 298

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 73/406 (17%), Positives = 116/406 (28%), Gaps = 167/406 (41%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWEIRVLSRLS 81
           +  LG+GA G V    D           A+K+V +             AR EI+VL  L+
Sbjct: 19  VDTLGEGAFGKVVECIDHK---AGGRHVAVKIVKNVDRYC------EAARSEIQVLEHLN 69

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-------------------------K 116
                       TD          P      ++                          K
Sbjct: 70  -----------TTD----------PNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIK 108

Query: 117 QNDRV-FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +N  + F    IR    +I  ++  LH+  + + DLKPENIL                  
Sbjct: 109 ENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENIL------------------ 150

Query: 176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTK-------SAR 228
                        + +      +  +  R                L           SA 
Sbjct: 151 ----------FVQSDYTEAYNPKIKRDERT---------------LINPDIKVVDFGSA- 184

Query: 229 VSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF 288
                    ++D+ E  ++ V T  Y +PEV+   G     D W++G +  E   G T F
Sbjct: 185 ---------TYDD-EHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVF 234

Query: 289 RGKN------------------------RKETFRNVLMKTPEFVGQR------------- 311
              +                        +++ F +  +   E                  
Sbjct: 235 PTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEF 294

Query: 312 --------TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
                     L DLIQ++LE DP KR+       E  +H FF  ++
Sbjct: 295 MLSQDVEHERLFDLIQKMLEYDPAKRI----TLREALKHPFFDLLK 336

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 74/394 (18%), Positives = 136/394 (34%), Gaps = 119/394 (30%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTLHAKHEAERRARWEIRVLSRL 80
           L  +G+GA G V      A D   +   A+K +   +   + +     R   EI++L R 
Sbjct: 32  LSYIGEGAYGMVC----SAYDNLNKVRVAIKKISPFEHQTYCQ-----RTLREIKILLRF 82

Query: 81  SHPFLPKLL-----GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEII 135
            H  +  +       ++E  + + + V      DL  L   Q+    S   I ++L +I+
Sbjct: 83  RHENIIGINDIIRAPTIEQMKDV-YIVQDLMETDLYKLLKTQH---LSNDHICYFLYQIL 138

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
             ++++H+  + +RDLKP N+L+  +  + + DF L+R             +++    L 
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLAR---------VADPDHDHTGFL- 188

Query: 196 VTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV 255
            TE       + TRW                                           Y 
Sbjct: 189 -TEY------VATRW-------------------------------------------YR 198

Query: 256 SPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN---------------------- 292
           +PE++        ++D W++G +  EML     F GK+                      
Sbjct: 199 APEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNC 258

Query: 293 -RKETFRNVLMKTPEFVGQ----------RTALTDLIQRLLEKDPVKRLGYLRGACEIKE 341
                 RN L+  P                 AL DL+ ++L  +P KR+       +   
Sbjct: 259 IINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRI----EVEQALA 313

Query: 342 HVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAM 375
           H + +         +   PF    E +DL ++ +
Sbjct: 314 HPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKL 347

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 76/389 (19%), Positives = 129/389 (33%), Gaps = 129/389 (33%)

Query: 3   ATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA 62
                      +  +D  + +  LG+G  G V+   D   + T     A+K +       
Sbjct: 19  PGSMSVSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNET----VAIKRI------- 67

Query: 63  KHEAER--------RARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLR 114
           + E E         R   E+ +L  L H  + +L   +  +  L     Y    + ++ +
Sbjct: 68  RLEHEEEGVPGTAIR---EVSLLKELQHRNIIELKSVIHHNHRLHLIFEYA---ENDLKK 121

Query: 115 YKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-----RQSGHVTLTDF 169
           Y   +   S  VI+ +L ++I  +   H+    +RDLKP+N+L+      ++  + + DF
Sbjct: 122 YMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDF 181

Query: 170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARV 229
            L+R      AF          P+   T        I+T W                   
Sbjct: 182 GLAR------AF--------GIPIRQFTH------EIITLW------------------- 202

Query: 230 SPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPF 288
                                   Y  PE++ G  H   +VD W++  +  EML  T  F
Sbjct: 203 ------------------------YRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLF 238

Query: 289 RGKNRKET----FR-----------------NVLMKTPEFVGQR----------TALTDL 317
            G +  +     F                  +     P+F G+               DL
Sbjct: 239 PGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDL 298

Query: 318 IQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           +  +LE DPVKR+     A    EH +F 
Sbjct: 299 LTAMLEMDPVKRI----SAKNALEHPYFS 323

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 71/400 (17%), Positives = 115/400 (28%), Gaps = 157/400 (39%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWEIRVLSRLS 81
           +  LG+G  G V    D A     +   ALK++ +             AR EI VL ++ 
Sbjct: 24  VGNLGEGTFGKVVECLDHA---RGKSQVALKIIRNVGKYR------EAARLEINVLKKIK 74

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-------------------------K 116
                      E D                 +                           K
Sbjct: 75  -----------EKD----------KENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLK 113

Query: 117 QNDRV-FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +N+   +    +R    ++  A+  LH   + + DLKPENIL                  
Sbjct: 114 ENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENIL------------------ 155

Query: 176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTK--SARVSPVS 233
                       N++F  L         + +            T ++     SA      
Sbjct: 156 ----------FVNSEFETLYNEHKSCEEKSV----------KNTSIRVADFGSA------ 189

Query: 234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN- 292
               +FD+ E   + V T  Y  PEV+   G     D W++G + +E   G T F+    
Sbjct: 190 ----TFDH-EHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHEN 244

Query: 293 -----------------------RKETFRNVLMKTPE---------------------FV 308
                                  +++ F    +   E                       
Sbjct: 245 REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDS 304

Query: 309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV 348
            +   L DL++R+LE DP +R+       E   H FF G+
Sbjct: 305 LEHVQLFDLMRRMLEFDPAQRI----TLAEALLHPFFAGL 340

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 19/193 (9%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA 66
           P       L     K +K+LG GA GTV+           + P A+K      L  +   
Sbjct: 4   PNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIK-----EL--REAT 56

Query: 67  ERRARWEI----RVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDR 120
             +A  EI     V++ + +P + +LLG   T       +    P G L  L Y +++  
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICLTSTV--QLITQLMPFGCL--LDYVREHKD 112

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
                 +  +  +I   + +L +  + +RDL   N+L++   HV +TDF L++ L  +  
Sbjct: 113 NIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 172

Query: 181 FEKQSLNNNKFPV 193
                    K P+
Sbjct: 173 EYHAE--GGKVPI 183

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 23/204 (11%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
             ++G+G+ G V+     A D       A+K V++     +  K     R   EI +L+R
Sbjct: 31  KHLIGRGSYGYVY----LAYDKNTEKNVAIKKVNRMFEDLIDCK-----RILREITILNR 81

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYC----PGGDLN-VLRYKQNDRVFSPSVIRFYLSEI 134
           L   ++ +L   +  D+ L +   Y        DL  + +        +   I+  L  +
Sbjct: 82  LKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIF---LTEEHIKTILYNL 138

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
           +     +H  GI +RDLKP N L+ Q   V + DF L+R +  +      +         
Sbjct: 139 LLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPG 198

Query: 195 PVTENPKRH--RRILTRWLHALPE 216
           P  +N K+     ++TRW  A PE
Sbjct: 199 PHNKNLKKQLTSHVVTRWYRA-PE 221

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++    L  LG+G   TV+    +  D       ALK   +  L  +  A   A  E+ +
Sbjct: 1   METYIKLDKLGEGTYATVYKGKSKLTDNLV----ALK---EIRLEHEEGAPCTAIREVSL 53

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L H  +  L   + T++ L     Y    DL          + +   ++ +L +++ 
Sbjct: 54  LKDLKHANIVTLHDIIHTEKSLTLVFEYLDK-DLKQY-LDDCGNIINMHNVKLFLFQLLR 111

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            + + H   + +RDLKP+N+LI + G + L DF L+R
Sbjct: 112 GLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLAR 148

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 84/421 (19%), Positives = 138/421 (32%), Gaps = 139/421 (33%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
           +K LGKGA G V+    ++ D       A+K +     ++  A+     R   EI +L+ 
Sbjct: 14  VKKLGKGAYGIVW----KSIDRRTGEVVAVKKIFDAFQNSTDAQ-----RTFREIMILTE 64

Query: 80  LS-HPFLPKLLGSLETDEF--------LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           LS H  +  LL  L  D                     DL+ +       +  P   ++ 
Sbjct: 65  LSGHENIVNLLNVLRADNDRDVYLVFDYM-------ETDLHAVIRAN---ILEPVHKQYV 114

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
           + ++I  I++LH+ G+ +RD+KP NIL+    HV + DF LSR+        ++  NN  
Sbjct: 115 VYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSF----VNIRRVTNNIP 170

Query: 191 FPVLPVTENPKRHRRIL-----TRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS 245
             +   TEN    + IL     TRW                                   
Sbjct: 171 LSINENTENFDDDQPILTDYVATRW----------------------------------- 195

Query: 246 NSFVGTEEYVSPEVVRGDGH-EFAVDWWALG-ILTYEMLYGTTPFRGKN----------- 292
                   Y +PE++ G       +D W+LG IL  E+L G   F G +           
Sbjct: 196 --------YRAPEILLGSTKYTKGIDMWSLGCILG-EILCGKPIFPGSSTMNQLERIIGV 246

Query: 293 ------------RKETFRNVLMKTPEFVGQRTALT------------------------- 315
                       +    + ++    E V  R +                           
Sbjct: 247 IDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEAL 306

Query: 316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN-DLTEKA 374
           DL+ +LL+ +P KR+     A +  +H F                      +N   +   
Sbjct: 307 DLLDKLLQFNPNKRI----SANDALKHPFVSIFHNPNEEPNCDHIITIPINDNVKHSIDD 362

Query: 375 M 375
            
Sbjct: 363 Y 363

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 38/214 (17%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
             ++G G+ G V      A D   +   A+K + +         +R  R EI +L+RL+H
Sbjct: 58  RHLIGTGSYGHVC----EAYDKLEKRVVAIKKILRVFEDLID-CKRILR-EIAILNRLNH 111

Query: 83  PFLPKLL-----GSLETD-------EFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRF 129
             + K+L       +E         E            D   + R        +   I+ 
Sbjct: 112 DHVVKVLDIVIPKDVEKFDELYVVLEIADS--------DFKKLFRTPVY---LTELHIKT 160

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR--NLVKKTAFEKQSLN 187
            L  ++  ++++H+ GI +RDLKP N L+ Q   V + DF L+R  +  +    +     
Sbjct: 161 LLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISP 220

Query: 188 NNKFPVLPVTENPKRHRRIL-----TRWLHALPE 216
                 L    + K  +R L     TRW  A PE
Sbjct: 221 REDDMNLVTFPHTKNLKRQLTGHVVTRWYRA-PE 253

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 47/206 (22%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 6   PPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE 65
              P          LK ++ LG+G  G V L      +       A+K      L A   
Sbjct: 19  FQGPGDPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVK-----ALKADAG 73

Query: 66  AERRARW--EIRVLSRLSHPFLPKLLG-SLETDEFLAWAV-PYCPGGDLNVLRYKQNDRV 121
            + R+ W  EI +L  L H  + K  G   +        V  Y P G L    Y     +
Sbjct: 74  PQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSL--RDYLPRHSI 131

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL------ 175
               ++ F   +I   + +LH     +RDL   N+L+     V + DF L++ +      
Sbjct: 132 GLAQLLLF-AQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 190

Query: 176 ----------VKKTAFEKQSLNNNKF 191
                     V   A E   L   KF
Sbjct: 191 YRVREDGDSPVFWYAPE--CLKEYKF 214

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 20/186 (10%)

Query: 16  DLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
               +   +++G+G  G V+   + D           A+K     +L      +      
Sbjct: 23  SSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKI---HCAVK-----SL--NRITDIGEVSQ 72

Query: 73  ---EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDL-NVLRYKQNDRVFSPSVI 127
              E  ++   SHP +  LLG     E     V PY   GDL N +R        +   +
Sbjct: 73  FLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIR--NETHNPTVKDL 130

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
             +  ++   +++L +    +RDL   N ++ +   V + DF L+R++  K  +   +  
Sbjct: 131 IGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 190

Query: 188 NNKFPV 193
             K PV
Sbjct: 191 GAKLPV 196

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTA--RCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
            + +  G+ G V    D    P A  R    +       + +     +R   EIR+L+  
Sbjct: 27  QRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHF 86

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYC----PGGDLN-VLRYKQNDRVFSPSVIRFYLSEII 135
            HP +  L       E  A    Y        DL  V+  ++     SP  I++++  I+
Sbjct: 87  HHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIV--ISPQHIQYFMYHIL 144

Query: 136 CAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             +  LH  G+ +RDL P NIL+  +  +T+ DF+L+R
Sbjct: 145 LGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAR 182

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 51/218 (23%), Positives = 76/218 (34%), Gaps = 37/218 (16%)

Query: 3   ATPPPQPQTTPS----------LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFAL 52
            T     Q               +  +LK L+ LGKG  G+V +              A+
Sbjct: 16  TTENLYFQGAMGSAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAV 75

Query: 53  KVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG-SLETDEFLAWAVP-YCPGGDL 110
           K +  ST     + ER    EI +L  L H  + K  G            +  Y P G L
Sbjct: 76  KKLQHSTEEHLRDFER----EIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 131

Query: 111 NVLRY-KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF 169
               Y +++        +  Y S+I   +E+L      +RDL   NIL+     V + DF
Sbjct: 132 --RDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 189

Query: 170 DLSRNL----------------VKKTAFEKQSLNNNKF 191
            L++ L                +   A E  SL  +KF
Sbjct: 190 GLTKVLPQDKEYYKVKEPGESPIFWYAPE--SLTESKF 225

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 27/196 (13%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
            +  +LK L+ LGKG  G+V +              A+K +  ST     + ER    EI
Sbjct: 7   FEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER----EI 62

Query: 75  RVLSRLSHPFLPKLLG-SLETDEFLAWAVP-YCPGGDLNVLRY-KQNDRVFSPSVIRFYL 131
            +L  L H  + K  G            +  Y P G L    Y +++        +  Y 
Sbjct: 63  EILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL--RDYLQKHKERIDHIKLLQYT 120

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL---------------- 175
           S+I   +E+L      +RDL   NIL+     V + DF L++ L                
Sbjct: 121 SQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESP 180

Query: 176 VKKTAFEKQSLNNNKF 191
           +   A E  SL  +KF
Sbjct: 181 IFWYAPE--SLTESKF 194

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 75/388 (19%), Positives = 119/388 (30%), Gaps = 125/388 (32%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE- 65
              +     ++   + L  +G+G  G VF    +A         ALK   K  +  + E 
Sbjct: 6   DSVECPFCDEVSKYEKLAKIGQGTFGEVF----KARHRKTGQKVALK---KVLMENEKEG 58

Query: 66  ----AERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV--------PYCPGGDLNVL 113
               A R    EI++L  L H  +  L+    T                 +C   DL  L
Sbjct: 59  FPITALR----EIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGL 113

Query: 114 RYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
                   F+ S I+  +  ++  + ++H   I +RD+K  N+LI + G + L DF L+R
Sbjct: 114 -LSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR 172

Query: 174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS 233
                 AF               T       R++T W                       
Sbjct: 173 ------AFS----LAKNSQPNRYTN------RVVTLW----------------------- 193

Query: 234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN 292
                               Y  PE++ G+      +D W  G +  EM   +   +G  
Sbjct: 194 --------------------YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT 233

Query: 293 ----------------------------------RKETFRNVLMKTPEFVGQRTALTDLI 318
                                              K   R V  +   +V    AL DLI
Sbjct: 234 EQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYAL-DLI 292

Query: 319 QRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            +LL  DP +R+     + +   H FF 
Sbjct: 293 DKLLVLDPAQRI----DSDDALNHDFFW 316

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 61/283 (21%), Positives = 105/283 (37%), Gaps = 95/283 (33%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
           LK +G GA G V      A D       A+K + +   +  HAK     RA  E+ ++  
Sbjct: 30  LKPIGSGAQGIV----CAAYDAILERNVAIKKLSRPFQNQTHAK-----RAYRELVLMKC 80

Query: 80  LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN----VLRYKQND--RV----FSPSVIRF 129
           ++H  +  LL     + F     P     +      V+     +  +V         + +
Sbjct: 81  VNHKNIIGLL-----NVFT----PQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSY 131

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN 189
            L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R           +   +
Sbjct: 132 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-----------TAGTS 180

Query: 190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV 249
                 +T        ++TR+  A                                    
Sbjct: 181 FM----MTPY------VVTRYYRA------------------------------------ 194

Query: 250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
                  PEV+ G G++  VD W++G +  EM+ G   F G +
Sbjct: 195 -------PEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD 230

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 19/193 (9%)

Query: 7   PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEA 66
           P       L     K +K+LG GA GTV+           + P A+K      L  +   
Sbjct: 4   PNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIK-----EL--REAT 56

Query: 67  ERRARWEI----RVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDR 120
             +A  EI     V++ + +P + +LLG   T       +    P G L  L Y +++  
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICLTSTV--QLITQLMPFGCL--LDYVREHKD 112

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
                 +  +  +I   + +L +  + +RDL   N+L++   HV +TDF L++ L  +  
Sbjct: 113 NIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 172

Query: 181 FEKQSLNNNKFPV 193
                    K P+
Sbjct: 173 EYHAE--GGKVPI 183

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 68/422 (16%), Positives = 126/422 (29%), Gaps = 149/422 (35%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
              K LG G+ G V        D  +   FALK   K          R    E+ ++  L
Sbjct: 10  SLGKTLGTGSFGIVC----EVFDIESGKRFALK---KVLQDP-----RYKNRELDIMKVL 57

Query: 81  SHP--------FLPKLLGSLETDEFLAWAVPYCPGG------------------DLNVL- 113
            H         F        +  +                               LNV+ 
Sbjct: 58  DHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIM 117

Query: 114 ------------RYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-RQ 160
                        + ++ R    ++I  Y+ ++  A+  +H++GI +RD+KP+N+L+  +
Sbjct: 118 EYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSK 177

Query: 161 SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTG 220
              + L DF  ++ L+                  P          I +R+  A PE    
Sbjct: 178 DNTLKLCDFGSAKKLIPSE---------------PSVA------YICSRFYRA-PEL--- 212

Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYE 280
                                       +G  EY             ++D W++G +  E
Sbjct: 213 ---------------------------MLGATEYTP-----------SIDLWSIGCVFGE 234

Query: 281 MLYGTTPFRGKNR---------------KETFRNV-----LMKTPEFVGQR--------- 311
           ++ G   F G+                 KE    +      ++ P    +          
Sbjct: 235 LILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGT 294

Query: 312 -TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDL 370
            +   DL++++L  +P  R+       E   H FF  +R    ++V      P     ++
Sbjct: 295 PSLAIDLLEQILRYEPDLRI----NPYEAMAHPFFDHLRNSYESEVKNNSNFPHGVNQNI 350

Query: 371 TE 372
            +
Sbjct: 351 PQ 352

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 75/383 (19%), Positives = 124/383 (32%), Gaps = 140/383 (36%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVV--DKSTLHAKHEAERRARWEIRVLS 78
           +  ++ G+G  GTV L  ++    T     A+K V  D           R  +  ++ L+
Sbjct: 26  QVERMAGQGTFGTVQLGKEK---STGM-SVAIKKVIQDPRF------RNRELQ-IMQDLA 74

Query: 79  RLSHP-------FLPKLLGSLETDEFLAWAVPYCPGGDL-NVLR-YKQNDRVFSPSVIRF 129
            L HP       +   L      D +L   + Y P   L    R Y +      P +I+ 
Sbjct: 75  VLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKV 133

Query: 130 YLSEIICAIEHLHN--MGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTAFEKQSL 186
           +L ++I +I  LH   + + +RD+KP N+L+    G + L DF  ++ L           
Sbjct: 134 FLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLS---------- 183

Query: 187 NNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN 246
                P  P          I +R+                                    
Sbjct: 184 -----PSEPNVA------YICSRY------------------------------------ 196

Query: 247 SFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN------------- 292
                  Y +PE++ G+ H   AVD W++G +  EM+ G   FRG N             
Sbjct: 197 -------YRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLG 249

Query: 293 --------------------------RKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDP 326
                                         F +  +K  +      A  DL+  LL+  P
Sbjct: 250 CPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAK-----EAY-DLLSALLQYLP 303

Query: 327 VKRLGYLRGACEIKEHVFFKGVR 349
            +R+       E   H +F  + 
Sbjct: 304 EERM----KPYEALCHPYFDELH 322

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 28/177 (15%)

Query: 13  PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
            S+     + +  +G GA GTV+    +A DP +    ALK V       +         
Sbjct: 4   GSMATSRYEPVAEIGVGAYGTVY----KARDPHSGHFVALKSV-------RVPNGGGGGG 52

Query: 73  --------EIRVLSRLS---HPFLPKLLGSLETDEFLAWAV-----PYCPGGDLNVLRYK 116
                   E+ +L RL    HP + +L+    T              +    DL     K
Sbjct: 53  GLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDK 111

Query: 117 QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
                     I+  + + +  ++ LH   I +RDLKPENIL+   G V L DF L+R
Sbjct: 112 APPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR 168

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 17/184 (9%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
                L+ LK+LG G  GTV          + + P  +K      +  + ++ R++    
Sbjct: 10  FKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIK-----VI--EDKSGRQSFQAV 62

Query: 73  --EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRF 129
              +  +  L H  + +LLG       L     Y P G L  L + +Q+     P ++  
Sbjct: 63  TDHMLAIGSLDHAHIVRLLGLC-PGSSLQLVTQYLPLGSL--LDHVRQHRGALGPQLLLN 119

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN 189
           +  +I   + +L   G+ +R+L   N+L++    V + DF ++  L         S    
Sbjct: 120 WGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYS--EA 177

Query: 190 KFPV 193
           K P+
Sbjct: 178 KTPI 181

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 29/197 (14%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
            +  +LK +  LGKG  G+V L              A+K      L      ++R  + E
Sbjct: 20  FEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVK-----QLQHSGPDQQRDFQRE 74

Query: 74  IRVLSRLSHPFLPKLLG-SLETDEFLAWAVP-YCPGGDLNVLRY-KQNDRVFSPSVIRFY 130
           I++L  L   F+ K  G S          V  Y P G L    + +++      S +  Y
Sbjct: 75  IQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCL--RDFLQRHRARLDASRLLLY 132

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL--------------- 175
            S+I   +E+L +    +RDL   NIL+    HV + DF L++ L               
Sbjct: 133 SSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQS 192

Query: 176 -VKKTAFEKQSLNNNKF 191
            +   A E  SL++N F
Sbjct: 193 PIFWYAPE--SLSDNIF 207

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 33/191 (17%)

Query: 1   MEATPPPQPQTTPSLDLDNL-------KALKILGKGAMGTVFLVHDRAADPTARCPFALK 53
           M + PP +                   + L+ +G GA G V      A D       A+K
Sbjct: 1   MSSPPPARSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVC----SAVDGRTGAKVAIK 56

Query: 54  VVDK---STLHAKHEAERRARWEIRVLSRLSHP--------FLPKLLGSLETDEFLAWAV 102
            + +   S L AK     RA  E+R+L  + H         F P       TD +L   V
Sbjct: 57  KLYRPFQSELFAK-----RAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYL---V 108

Query: 103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG 162
               G DL  L   +         I+F + +++  + ++H  GI +RDLKP N+ + +  
Sbjct: 109 MPFMGTDLGKLMKHEK---LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDC 165

Query: 163 HVTLTDFDLSR 173
            + + DF L+R
Sbjct: 166 ELKILDFGLAR 176

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 49/194 (25%)

Query: 248 FVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN-------------- 292
           +V T  Y +PEV+         VD W++G +  EM+ G T F+G +              
Sbjct: 185 YVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGT 244

Query: 293 ---------RKETFRNVLMKTPEFVGQ----------RTALTDLIQRLLEKDPVKRLGYL 333
                    + +  +N +   PE   +            A+ +L++++L  D  +R+   
Sbjct: 245 PPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAV-NLLEKMLVLDAEQRV--- 300

Query: 334 RGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIRE--YFENLRA 391
             A E   H +F+ +  D   +     +  S ++ D T         + +   Y E L  
Sbjct: 301 -TAGEALAHPYFESLH-DTEDEPQVQKYDDSFDDVDRTLD-------EWKRVTYKEVLSF 351

Query: 392 PPPSMPPSPLPSPS 405
            PP    + +   +
Sbjct: 352 KPPRQLGARVSKET 365

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 22/160 (13%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
           L  +G GA G+V      A D       A+K + +   S +HAK     R   E+R+L  
Sbjct: 34  LSPVGSGAYGSV----CAAFDTKTGLRVAVKKLSRPFQSIIHAK-----RTYRELRLLKH 84

Query: 80  LSHPFLPKLL------GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           + H  +  LL       SLE    +        G DLN +   Q     +   ++F + +
Sbjct: 85  MKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQK---LTDDHVQFLIYQ 140

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           I+  ++++H+  I +RDLKP N+ + +   + + DF L+R
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 49/192 (25%)

Query: 248 FVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKN-------------- 292
           +V T  Y +PE++    H    VD W++G +  E+L G T F G +              
Sbjct: 189 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGT 248

Query: 293 ---------RKETFRNVLMKTPEFVGQ----------RTALTDLIQRLLEKDPVKRLGYL 333
                      E+ RN +    +                A+ DL++++L  D  KR+   
Sbjct: 249 PGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAV-DLLEKMLVLDSDKRI--- 304

Query: 334 RGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAMSGGGVDIRE--YFENLRA 391
             A +   H +F     D   + +  P+  S E  DL          + +   Y E +  
Sbjct: 305 -TAAQALAHAYFAQYH-DPDDEPVADPYDQSLESRDLLID-------EWKSLTYDEVISF 355

Query: 392 PPPSMPPSPLPS 403
            PP +    + S
Sbjct: 356 VPPPLDQEEMES 367

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 23/160 (14%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK---STLHAKHEAERRARWEIRVLSR 79
              +G GA G+V      A D  +    A+K + +   S + AK     RA  E+ +L  
Sbjct: 29  PTHVGSGAYGSVC----SAIDKRSGEKVAIKKLSRPFQSEIFAK-----RAYRELLLLKH 79

Query: 80  LSHPFLPKLL------GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           + H  +  LL       SL       + V      DL  +        FS   I++ + +
Sbjct: 80  MQHENVIGLLDVFTPASSLRNFYDF-YLVMPFMQTDLQKI-MGLK---FSEEKIQYLVYQ 134

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           ++  ++++H+ G+ +RDLKP N+ + +   + + DF L+R
Sbjct: 135 MLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 25/191 (13%)

Query: 18  DNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR---W 72
                 ++LGKG  G+V    +             A+K      L A   A         
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSFV---KVAVK-----MLKADIIASSDIEEFLR 74

Query: 73  EIRVLSRLSHPFLPKLLG-SLETDEFLAWA-----VPYCPGGDLN----VLRYKQNDRVF 122
           E   +    HP + KL+G SL +            +P+   GDL+      R  +N    
Sbjct: 75  EAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNL 134

Query: 123 SPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
               +  ++ +I C +E+L +    +RDL   N ++ +   V + DF LSR +     + 
Sbjct: 135 PLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYR 194

Query: 183 KQSLNNNKFPV 193
           +     +K PV
Sbjct: 195 QGC--ASKLPV 203

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 20/189 (10%)

Query: 13  PSLDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA 70
                  +   +++G+G  G V+   + D           A+K     +L      +   
Sbjct: 84  IGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKI---HCAVK-----SL--NRITDIGE 133

Query: 71  RW----EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDL-NVLRYKQNDRVFSP 124
                 E  ++   SHP +  LLG     E     V PY   GDL N +R        + 
Sbjct: 134 VSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIR--NETHNPTV 191

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ 184
             +  +  ++   ++ L +    +RDL   N ++ +   V + DF L+R++  K      
Sbjct: 192 KDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVH 251

Query: 185 SLNNNKFPV 193
           +    K PV
Sbjct: 252 NKTGAKLPV 260

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 14/163 (8%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDK-----STLHAKHEAERRA--RWEIRV 76
               +   G ++     +       P   K   K       L  +    +RA    ++  
Sbjct: 48  SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNK 107

Query: 77  LSRLS---HPFLPKLLGS-LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             +L       +P  +G  +  D++    +P   G  L          V S   +     
Sbjct: 108 WKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVAC 166

Query: 133 EIICAIEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLSR 173
            ++ A+E LH     + ++  ENI +       VTL  +  + 
Sbjct: 167 RLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAF 209

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 18/159 (11%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           K  + +G+G+ G +F   +   +       A+K   + +         + R E R    L
Sbjct: 13  KVGRRIGEGSFGVIFEGTNLLNNQ----QVAIKFEPRRSDA------PQLRDEYRTYKLL 62

Query: 81  SH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
           +    +P +    +        +    G  L  L      R FS   +     +++  ++
Sbjct: 63  AGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLL-DLCGRKFSVKTVAMAAKQMLARVQ 120

Query: 140 HLHNMGIAYRDLKPENILIRQSGH-----VTLTDFDLSR 173
            +H   + YRD+KP+N LI +        + + DF + +
Sbjct: 121 SIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 15  LDLDNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRA 70
           +  + +   + LG+G+ G V+          +P  R   A+K V + +++  + E     
Sbjct: 22  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRV--AIKTVNEAASMRERIEFLN-- 77

Query: 71  RWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRF 129
             E  V+   +   + +LLG +   +     +     GDL + LR  +     +P +   
Sbjct: 78  --EASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPP 135

Query: 130 YLSEII-CAI------EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
            LS++I  A        +L+     +RDL   N ++ +   V + DF ++R++ +   + 
Sbjct: 136 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 195

Query: 183 KQSLNNNKFPV 193
           K        PV
Sbjct: 196 KGG--KGLLPV 204

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 20/186 (10%)

Query: 16  DLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           +     + +++GKG  G V+     D+A +       A+K     +L      E +    
Sbjct: 19  ERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRI---QCAIK-----SL--SRITEMQQVEA 68

Query: 73  ---EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDRVFSPSVI 127
              E  ++  L+HP +  L+G +   E L   + PY   GDL  L++ +   R  +   +
Sbjct: 69  FLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDL--LQFIRSPQRNPTVKDL 126

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
             +  ++   +E+L      +RDL   N ++ +S  V + DF L+R+++ +  +  Q   
Sbjct: 127 ISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHR 186

Query: 188 NNKFPV 193
           + + PV
Sbjct: 187 HARLPV 192

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 42/221 (19%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
                P P   P LD +++K   ++G+G  G V     R      R   A+K      + 
Sbjct: 9   HGKNNPDPTIYPVLDWNDIKFQDVIGEGNFGQVLKA--RIKKDGLRMDAAIK-----RM- 60

Query: 62  AKHEAERRARW----EIRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRY 115
            K  A +        E+ VL +L  HP +  LLG+ E   +L  A+ Y P G+L + LR 
Sbjct: 61  -KEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRK 119

Query: 116 KQNDRVFSPSVIRFYLSEIICAI-------------EHLHNMGIAYRDLKPENILIRQSG 162
            +         I    +  + +              ++L      +RDL   NIL+ ++ 
Sbjct: 120 SRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY 179

Query: 163 HVTLTDFDLSRNL------------VKKTAFEKQSLNNNKF 191
              + DF LSR              V+  A E  SLN + +
Sbjct: 180 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIE--SLNYSVY 218

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 16/157 (10%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           +  + +G G+ G ++L  D AA                 LH           E ++   +
Sbjct: 12  RLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLH----------IESKIYKMM 61

Query: 81  SH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
                +P +       ++    +    G  L  L      R FS   +     ++I  IE
Sbjct: 62  QGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLF-NFCSRKFSLKTVLLLADQMISRIE 119

Query: 140 HLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSR 173
           ++H+    +RD+KP+N L+        V + DF L++
Sbjct: 120 YIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 35/187 (18%)

Query: 6   PPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE 65
               +     DL   +  K+ G+G  G V+    +  D      +ALK ++ + +     
Sbjct: 10  KLSSERERVEDLFEYEGCKV-GRGTYGHVYKAKRK--DGKDDKDYALKQIEGTGIS--MS 64

Query: 66  AERRARWEIRVLSRLSHP--------FLPKLLGSL-------ETDEFLAWAVPYCPGGDL 110
           A R    EI +L  L HP        FL      +       E D  L   + +      
Sbjct: 65  ACR----EIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHD--LWHIIKFHRASKA 118

Query: 111 NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI----RQSGHVTL 166
           N     +        +++  L +I+  I +LH   + +RDLKP NIL+     + G V +
Sbjct: 119 N-----KKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKI 173

Query: 167 TDFDLSR 173
            D   +R
Sbjct: 174 ADMGFAR 180

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 109 DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD 168
           DL     K  +       I+  + +++  ++ LH+  + +RDLKP+NIL+  SG + L D
Sbjct: 104 DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD 163

Query: 169 FDLSR 173
           F L+R
Sbjct: 164 FGLAR 168

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 22/192 (11%)

Query: 15  LDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVV--DKSTLHAKHEAERRA 70
           +D + L   KILG+G  G+V    +             A+K +  D S+     E     
Sbjct: 31  IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSL---KVAVKTMKLDNSSQREIEEFLS-- 85

Query: 71  RWEIRVLSRLSHPFLPKLLG-SLETDEFLAWA----VPYCPGGDLN----VLRYKQNDRV 121
             E   +   SHP + +LLG  +E            +P+   GDL+      R +   + 
Sbjct: 86  --EAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKH 143

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
                +  ++ +I   +E+L N    +RDL   N ++R    V + DF LS+ +     +
Sbjct: 144 IPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYY 203

Query: 182 EKQSLNNNKFPV 193
            +      K PV
Sbjct: 204 RQGR--IAKMPV 213

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 30/206 (14%)

Query: 1   MEATPPPQPQTTPS-----LDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALK 53
            E        T PS     +  + ++  + +G+G  G V   +              A+K
Sbjct: 368 AEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAM---AVAIK 424

Query: 54  VVDKSTLHAKHEAERRARW----EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGG 108
                T   K+      R     E   + +  HP + KL+G +  +    W +   C  G
Sbjct: 425 -----TC--KNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPV--WIIMELCTLG 475

Query: 109 DLNVLRY-KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT 167
           +L    + +        + +  Y  ++  A+ +L +    +RD+   N+L+  +  V L 
Sbjct: 476 EL--RSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLG 533

Query: 168 DFDLSRNLVKKTAFEKQSLNNNKFPV 193
           DF LSR  ++ + + K S    K P+
Sbjct: 534 DFGLSR-YMEDSTYYKAS--KGKLPI 556

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 60/176 (34%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWEIRVLSRLS 81
           LK++GKG+ G V     +A D       ALK+V ++   H      R+A  EIR+L  L 
Sbjct: 102 LKVIGKGSFGQVV----KAYDHKVHQHVALKMVRNEKRFH------RQAAEEIRILEHLR 151

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-------------------------- 115
                      + D              +NV+                            
Sbjct: 152 -----------KQD----------KDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIK 190

Query: 116 KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH--VTLTDF 169
           K   + FS  ++R +   I+  ++ LH   I + DLKPENIL++Q G   + + DF
Sbjct: 191 KNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDF 246

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 32/172 (18%)

Query: 24  KILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
             +G+G  G ++L    +++      P  +KV       + +        E++   R + 
Sbjct: 41  LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVE-----PSDN---GPLFTELKFYQRAAK 92

Query: 83  PFLPKLLGSLETDEFLAWAVPYC--------PGGDLNVL-----------RYKQNDRVFS 123
           P   +        ++L   VP           G     +            Y+ N + FS
Sbjct: 93  PEQIQKWIRTRKLKYLG--VPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFS 150

Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLSR 173
              +      I+  +E++H     + D+K  N+L+  +    V L D+ L+ 
Sbjct: 151 RKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAY 202

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 58/332 (17%), Positives = 104/332 (31%), Gaps = 100/332 (30%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           L+ ++L   + +G+G  G VF               A+K         +       +   
Sbjct: 111 LNHEDLVLGEQIGRGNFGEVF----SGRLRADNTLVAVKSC-------RETLPPDLKAKF 159

Query: 73  --EIRVLSRLSHPFLPKLLGSLETDEFLAWAVP------YCPGGDL-NVLRYKQNDRVFS 123
             E R+L + SHP + +L+G     +      P         GGD    LR         
Sbjct: 160 LQEARILKQYSHPNIVRLIGVCTQKQ------PIYIVMELVQGGDFLTFLR--TEGARLR 211

Query: 124 PSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
              +   + +    +E+L +    +RDL   N L+ +   + ++DF +SR          
Sbjct: 212 VKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAAS 271

Query: 184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPEN-KTGLKKTKSARVSPVSRRQQSFDNG 242
                 + PV               +W  A PE    G   ++S                
Sbjct: 272 GG--LRQVPV---------------KWT-A-PEALNYGRYSSES---------------- 296

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVL 301
                                      D W+ GIL +E    G +P+   + ++T   V 
Sbjct: 297 ---------------------------DVWSFGILLWETFSLGASPYPNLSNQQTREFVE 329

Query: 302 ----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               +  PE      A+  L+++    +P +R
Sbjct: 330 KGGRLPCPE--LCPDAVFRLMEQCWAYEPGQR 359

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 20/193 (10%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWE 73
           +   ++     LG+GA G VFL       P       A+K + +++  A+ + +R    E
Sbjct: 38  IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR----E 93

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLR------------YKQNDR 120
             +L+ L H  + +  G       L     Y   GDLN  LR                  
Sbjct: 94  AELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPG 153

Query: 121 VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA 180
                 +    S++   + +L  +   +RDL   N L+ Q   V + DF +SR++     
Sbjct: 154 PLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 213

Query: 181 FEKQSLNNNKFPV 193
           +          P+
Sbjct: 214 YRVGG--RTMLPI 224

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           +    +   K++G G  G V+    + +      P A+K     TL  K     + R   
Sbjct: 41  IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIK-----TL--KAGYTEKQRVDF 93

Query: 73  --EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDRVFSPSVIR 128
             E  ++ + SH  + +L G + +       +  Y   G L   ++ ++ D  FS   + 
Sbjct: 94  LGEAGIMGQFSHHNIIRLEGVI-SKYKPMMIITEYMENGAL--DKFLREKDGEFSVLQLV 150

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
             L  I   +++L NM   +RDL   NIL+  +    ++DF LSR L         + + 
Sbjct: 151 GMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTT-SG 209

Query: 189 NKFPV 193
            K P+
Sbjct: 210 GKIPI 214

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 29/192 (15%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  ++LK  K LG G  G V++              A+K     T+     +      E 
Sbjct: 185 IPRESLKLEKKLGAGQFGEVWMATYNK-----HTKVAVK-----TMKPGSMSVEAFLAEA 234

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
            V+  L H  L KL   + T E +     +   G L + L+  +  +   P +I F  ++
Sbjct: 235 NVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDF-SAQ 292

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL--------------VKKT 179
           I   +  +      +RDL+  NIL+  S    + DF L+R +              +K T
Sbjct: 293 IAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWT 352

Query: 180 AFEKQSLNNNKF 191
           A E  ++N   F
Sbjct: 353 APE--AINFGSF 362

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  ++L+    LG+G  G V++                +V  K TL     +      E 
Sbjct: 181 IPRESLRLEVKLGQGCFGEVWM---------GTWNGTTRVAIK-TLKPGTMSPEAFLQEA 230

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+ +L H  L +L   + ++E +     Y   G L + L+  +  +      +    ++
Sbjct: 231 QVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQ 288

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           I   + ++  M   +RDL+  NIL+ ++    + DF L+R +       +Q     KFP+
Sbjct: 289 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ---GAKFPI 345

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 18/159 (11%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           +  K +G G  G + L  +   +       A+K+    +         +   E R   +L
Sbjct: 12  RVGKKIGCGNFGELRLGKNLYTNE----YVAIKLEPMKSRA------PQLHLEYRFYKQL 61

Query: 81  SH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
                +P++       ++ A  +    G  L  L     DR FS   +     ++I  +E
Sbjct: 62  GSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLF-DLCDRTFSLKTVLMIAIQLISRME 119

Query: 140 HLHNMGIAYRDLKPENILIRQSGH-----VTLTDFDLSR 173
           ++H+  + YRD+KPEN LI + G+     + + DF L++
Sbjct: 120 YVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 33/171 (19%)

Query: 24  KILGKGAMGTVFLVHD-RAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           K +G G  G ++L       +  AR    ++  +   L +          E++   R++ 
Sbjct: 43  KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFS----------ELKFYQRVAK 92

Query: 83  PFLPKLLGSLETDEFLAWAVPYC--------PGGDLNVL----------RYKQNDRVFSP 124
               K     +  ++L   +P           G     +          +    +  F  
Sbjct: 93  KDCIKKWIERKQLDYLG--IPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKK 150

Query: 125 SVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLSR 173
           S +      ++  +E++H     + D+K  N+L+  +    V L D+ LS 
Sbjct: 151 STVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSY 201

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 16/180 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D   L  ++ +G G  G V L          +   A+K     T+     +E     E 
Sbjct: 5   IDPSELTFVQEIGSGQFGLVHL-----GYWLNKDKVAIK-----TIREGAMSEEDFIEEA 54

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSE 133
            V+ +LSHP L +L G       +     +   G L    Y +    +F+   +     +
Sbjct: 55  EVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCL--SDYLRTQRGLFAAETLLGMCLD 112

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           +   + +L    + +RDL   N L+ ++  + ++DF ++R  V    +   +    KFPV
Sbjct: 113 VCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTR-FVLDDQYTSST--GTKFPV 169

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 34/199 (17%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           +   +L+ L+ LG G+ G V      A         A+K      L     ++  A    
Sbjct: 15  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGK-TVSVAVK-----CLKPDVLSQPEAMDDF 68

Query: 73  --EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDRVFSPSVIR 128
             E+  +  L H  L +L G + T       V    P G L  L   +++   F    + 
Sbjct: 69  IREVNAMHSLDHRNLIRLYGVVLTPPM--KMVTELAPLGSL--LDRLRKHQGHFLLGTLS 124

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL------------- 175
            Y  ++   + +L +    +RDL   N+L+     V + DF L R L             
Sbjct: 125 RYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHR 184

Query: 176 ---VKKTAFEKQSLNNNKF 191
                  A E  SL    F
Sbjct: 185 KVPFAWCAPE--SLKTRTF 201

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  ++L+    LG+G  G V++                +V  K TL     +      E 
Sbjct: 264 IPRESLRLEVKLGQGCFGEVWM---------GTWNGTTRVAIK-TLKPGTMSPEAFLQEA 313

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           +V+ +L H  L +L   + ++E +     Y   G L + L+  +  +      +    ++
Sbjct: 314 QVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQ 371

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           I   + ++  M   +RDL+  NIL+ ++    + DF L+R +       +Q     KFP+
Sbjct: 372 IASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ---GAKFPI 428

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 21  KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL 80
           +  + +G G+ G ++L  +   +       A+K+ +  T H       +  +E ++   L
Sbjct: 10  RLGRKIGSGSFGEIYLGTNIQTNE----EVAIKLENVKTKH------PQLLYESKIYRIL 59

Query: 81  S-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIE 139
                +P +       ++    +    G  L  L    + R  S   +     ++I  +E
Sbjct: 60  QGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCS-RKLSLKTVLMLADQMINRVE 117

Query: 140 HLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSR 173
            +H+    +RD+KP+N L+        V + DF L++
Sbjct: 118 FVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAK 154

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 28/198 (14%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARW- 72
           + L  ++ ++ LG+   G V+  H     P  +    A+K     TL  K +AE   R  
Sbjct: 6   ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIK-----TL--KDKAEGPLREE 58

Query: 73  ---EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLR-------------Y 115
              E  + +RL HP +  LLG +  D+ L+    YC  GDL+  L               
Sbjct: 59  FRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDD 118

Query: 116 KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +       P      +++I   +E+L +  + ++DL   N+L+    +V ++D  L R +
Sbjct: 119 RTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREV 178

Query: 176 VKKTAFEKQSLNNNKFPV 193
                ++     N+  P+
Sbjct: 179 YAADYYKLLG--NSLLPI 194

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 30/168 (17%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           ++ LG G   TV+L  D           A+K+V    ++ +      A  EI++L R++ 
Sbjct: 24  VRKLGWGHFSTVWLAKDM----VNNTHVAMKIVRGDKVYTEA-----AEDEIKLLQRVND 74

Query: 83  --PFLPKLLGSLE----TDEFL---AWAVPYC-----PGGDLNVLRYKQNDRVFSPSVIR 128
                   +G+       D F       V         G +L  L  K   R      ++
Sbjct: 75  ADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVK 134

Query: 129 FYLSEIICAIEHLH-NMGIAYRDLKPENILIRQSGH------VTLTDF 169
               +++  ++++H   GI + D+KPEN+L+           + + D 
Sbjct: 135 QISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADL 182

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 53/159 (33%)

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPF--------- 288
           +    E   + + T EY SPEV+ G       D W+   L +E++ G   F         
Sbjct: 185 ACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYT 244

Query: 289 ----------------------RGKNRKETF-----------------RNVLMKTPEFVG 309
                                  GK  +  F                  +VL +  +F  
Sbjct: 245 KDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSK 304

Query: 310 -QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
            +   ++D +  +L+ DP KR      A  +  H + K 
Sbjct: 305 DEAKEISDFLSPMLQLDPRKRA----DAGGLVNHPWLKD 339

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 20/191 (10%)

Query: 15  LDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRAR 71
           +   N+  ++ LG GA G V+   V     DP+     A+K + +  +   + +      
Sbjct: 27  VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSP-LQVAVKTLPEVCSEQDELDFLM--- 82

Query: 72  WEIRVLSRLSHPFLPKLLG-SLETDEFLAWAVPYCPGGDL-NVLR----YKQNDRVFSPS 125
            E  ++S+ +H  + + +G SL++       +    GGDL + LR            +  
Sbjct: 83  -EALIISKFNHQNIVRCIGVSLQSLPRFI-LMELMAGGDLKSFLRETRPRPSQPSSLAML 140

Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSRNLVKKTAFE 182
            +     +I C  ++L      +RD+   N L+   G      + DF ++R++ + + + 
Sbjct: 141 DLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR 200

Query: 183 KQSLNNNKFPV 193
           K        PV
Sbjct: 201 KGG--CAMLPV 209

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 30/206 (14%)

Query: 1   MEATPPPQPQTTPS---LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDK 57
           M  +   Q +   S   L++  LK L+ +GKG  G V L   R          A+K    
Sbjct: 1   MGGSVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRG------NKVAVK---- 50

Query: 58  STLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDL-NVLRY 115
             +     A+     E  V+++L H  L +LLG +  ++   + V  Y   G L + LR 
Sbjct: 51  -CIKNDATAQAFLA-EASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR- 107

Query: 116 KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
            +   V     +  +  ++  A+E+L      +RDL   N+L+ +     ++DF L++  
Sbjct: 108 SRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA 167

Query: 176 ----------VKKTAFEKQSLNNNKF 191
                     VK TA E  +L   KF
Sbjct: 168 SSTQDTGKLPVKWTAPE--ALREKKF 191

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 34/205 (16%)

Query: 15  LDLDNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRA 70
              +N++ ++ +G+GA G VF          +P      A+K++ ++++   + + +R  
Sbjct: 44  YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMV--AVKMLKEEASADMQADFQR-- 99

Query: 71  RWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRF 129
             E  +++   +P + KLLG     + +     Y   GDLN  LR      V S S    
Sbjct: 100 --EAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 157

Query: 130 YLSEIICA-------IEHLHNM------GIAY--------RDLKPENILIRQSGHVTLTD 168
                + +             +      G+AY        RDL   N L+ ++  V + D
Sbjct: 158 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIAD 217

Query: 169 FDLSRNLVKKTAFEKQSLNNNKFPV 193
           F LSRN+     ++     N+  P+
Sbjct: 218 FGLSRNIYSADYYKADG--NDAIPI 240

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTAR-CPFALKVVDKSTLHAKHEAERRARWE 73
           +   ++   + LG+GA G VFL       PT      A+K +   TL A+ + +R    E
Sbjct: 12  IKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQR----E 67

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN-VLRYKQNDRVFSPSVIRFYLS 132
             +L+ L H  + K  G     + L     Y   GDLN  LR    D +           
Sbjct: 68  AELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAK 127

Query: 133 EIICAIEHLHNM------GIAY--------RDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
             +  +  + ++      G+ Y        RDL   N L+  +  V + DF +SR++   
Sbjct: 128 GEL-GLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST 186

Query: 179 TAFEKQSLNNNKFPV 193
             +      +   P+
Sbjct: 187 DYYRVGG--HTMLPI 199

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 38/199 (19%)

Query: 15  LDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           +  +++   +ILG+G  G V+  +  +   +       A+K         K +     + 
Sbjct: 9   IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKI---NVAVKTC-------KKDCTLDNKE 58

Query: 73  ----EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDRVFSPSV 126
               E  ++  L HP + KL+G +E +    W +    P G+L    Y ++N        
Sbjct: 59  KFMSEAVIMKNLDHPHIVKLIGIIEEEPT--WIIMELYPYGEL--GHYLERNKNSLKVLT 114

Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL----------- 175
           +  Y  +I  A+ +L ++   +RD+   NIL+     V L DF LSR +           
Sbjct: 115 LVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVT 174

Query: 176 ---VKKTAFEKQSLNNNKF 191
              +K  + E  S+N  +F
Sbjct: 175 RLPIKWMSPE--SINFRRF 191

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 18/181 (9%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L  + +  LK LG G  G V L          +   A+K      +     +E     E 
Sbjct: 5   LKREEITLLKELGSGQFGVVKL-----GKWKGQYDVAVK-----MIKEGSMSEDEFFQEA 54

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVP-YCPGGDLNVLRY-KQNDRVFSPSVIRFYLS 132
           + + +LSHP L K  G + + E+  + V  Y   G L  L Y + + +   PS +     
Sbjct: 55  QTMMKLSHPKLVKFYG-VCSKEYPIYIVTEYISNGCL--LNYLRSHGKGLEPSQLLEMCY 111

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +  L +    +RDL   N L+ +   V ++DF ++R  V    +        KFP
Sbjct: 112 DVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTR-YVLDDQYVSSV--GTKFP 168

Query: 193 V 193
           V
Sbjct: 169 V 169

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 29/197 (14%)

Query: 18  DNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           + L   K LG GA G V          +D       A+K++  S     H  ER A   E
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTV--AVKMLKPSA----HLTEREALMSE 76

Query: 74  IRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYL 131
           ++VLS L +H  +  LLG+            YC  GDL N LR K++  + S +      
Sbjct: 77  LKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIME 136

Query: 132 SE---------IICAI------EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
            +         +  +         L +    +RDL   NIL+       + DF L+R++ 
Sbjct: 137 DDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIK 196

Query: 177 KKTAFEKQSLNNNKFPV 193
             + +  +   N + PV
Sbjct: 197 NDSNYVVKG--NARLPV 211

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 15  LDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW 72
           ++   +   KI+G G  G V    +           P A+K      L A +   +R  +
Sbjct: 46  IEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDV---PVAIK-----ALKAGYTERQRRDF 97

Query: 73  --EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDRVFSPSVIR 128
             E  ++ +  HP + +L G + T   LA  V  Y   G L    + + +D  F+   + 
Sbjct: 98  LSEASIMGQFDHPNIIRLEGVV-TRGRLAMIVTEYMENGSL--DTFLRTHDGQFTIMQLV 154

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
             L  +   + +L ++G  +RDL   N+L+  +    ++DF LSR L         +   
Sbjct: 155 GMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTT-TG 213

Query: 189 NKFPV 193
            K P+
Sbjct: 214 GKIPI 218

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 18/190 (9%)

Query: 15  LDLDNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRAR 71
           +   N+  ++ LG GA G V+   V     DP+     A+K + +  +   + +      
Sbjct: 68  VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSP-LQVAVKTLPEVCSEQDELDFLM--- 123

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLR----YKQNDRVFSPSV 126
            E  ++S+ +H  + + +G           +    GGDL + LR            +   
Sbjct: 124 -EALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLD 182

Query: 127 IRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSRNLVKKTAFEK 183
           +     +I C  ++L      +RD+   N L+   G      + DF ++R++ +   + K
Sbjct: 183 LLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRK 242

Query: 184 QSLNNNKFPV 193
                   PV
Sbjct: 243 GG--CAMLPV 250

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 15  LDLDNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           +  ++L   + LG+G    +F                   LKV+DK+  +          
Sbjct: 5   IRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFE--- 61

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP-YCPGGDLNVLRY-KQNDRVFSPSVIRF 129
               ++S+LSH  L    G +         V  +   G L    Y K+N    +      
Sbjct: 62  -AASMMSKLSHKHLVLNYG-VCVCGDENILVQEFVKFGSL--DTYLKKNKNCINILWKLE 117

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH--------VTLTDFDLSRNLVK 177
              ++  A+  L    + + ++  +NIL+ +           + L+D  +S  ++ 
Sbjct: 118 VAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLP 173

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 27/199 (13%)

Query: 15  LDLDNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRA 70
              D L   K LG+GA G V     V      P      A+K++ D +T     +     
Sbjct: 32  FPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS-- 89

Query: 71  RWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIR 128
             E+ ++  +  H  +  LLG+   D  L   V Y   G+L   LR ++   +     I 
Sbjct: 90  --EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 147

Query: 129 FYLSEIICAIEHLHNM------GIAY--------RDLKPENILIRQSGHVTLTDFDLSRN 174
               E +   + L +       G+ Y        RDL   N+L+ ++  + + DF L+R+
Sbjct: 148 RVPEEQMT-FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 206

Query: 175 LVKKTAFEKQSLNNNKFPV 193
           +     ++K +  N + PV
Sbjct: 207 INNIDYYKKTT--NGRLPV 223

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 52.9 bits (127), Expect = 9e-08
 Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 27/192 (14%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           ++  ++     LG G  G V+         +     A+K     TL            E 
Sbjct: 217 MERTDITMKHKLGGGQYGEVYE--GVWKKYSLTV--AVK-----TLKEDTMEVEEFLKEA 267

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
            V+  + HP L +LLG    +        +   G+L + LR + N +  S  V+ +  ++
Sbjct: 268 AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQ 326

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL--------------VKKT 179
           I  A+E+L      +R+L   N L+ ++  V + DF LSR +              +K T
Sbjct: 327 ISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 386

Query: 180 AFEKQSLNNNKF 191
           A E  SL  NKF
Sbjct: 387 APE--SLAYNKF 396

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 19/184 (10%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW-- 72
           +  + ++  + +G+G  G V      + +       A+K     T   K+      R   
Sbjct: 12  IQRERIELGRCIGEGQFGDVHQGIYMSPE-NPALAVAIK-----TC--KNCTSDSVREKF 63

Query: 73  --EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRF 129
             E   + +  HP + KL+G + T+  +   +  C  G+L    + +        + +  
Sbjct: 64  LQEALTMRQFDHPHIVKLIGVI-TENPVWIIMELCTLGEL--RSFLQVRKYSLDLASLIL 120

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNN 189
           Y  ++  A+ +L +    +RD+   N+L+  +  V L DF LSR  ++ + + K S    
Sbjct: 121 YAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR-YMEDSTYYKAS--KG 177

Query: 190 KFPV 193
           K P+
Sbjct: 178 KLPI 181

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 14/180 (7%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           ++  ++     LG G  G V+               A+K     TL            E 
Sbjct: 10  MERTDITMKHKLGGGQYGEVY----EGVWKKYSLTVAVK-----TLKEDTMEVEEFLKEA 60

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
            V+  + HP L +LLG    +        +   G+L + LR + N +  S  V+ +  ++
Sbjct: 61  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQ 119

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           I  A+E+L      +RDL   N L+ ++  V + DF LSR L+    +   +    KFP+
Sbjct: 120 ISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR-LMTGDTYTAHA--GAKFPI 176

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 22/198 (11%)

Query: 3   ATPPPQPQTTPS------LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD 56
                 P T         +D  +L  LK LG G  G V            +   A+K   
Sbjct: 3   LGSKNAPSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKY-----GKWRGQYDVAIK--- 54

Query: 57  KSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY- 115
              +     +E     E +V+  LSH  L +L G       +     Y   G L  L Y 
Sbjct: 55  --MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL--LNYL 110

Query: 116 KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           ++    F    +     ++  A+E+L +    +RDL   N L+   G V ++DF LSR  
Sbjct: 111 REMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSR-Y 169

Query: 176 VKKTAFEKQSLNNNKFPV 193
           V    +       +KFPV
Sbjct: 170 VLDDEYTSSV--GSKFPV 185

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 29/192 (15%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  + LK ++ LG G  G V++              A+K     +L     +      E 
Sbjct: 10  VPRETLKLVERLGAGQFGEVWM-----GYYNGHTKVAVK-----SLKQGSMSPDAFLAEA 59

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
            ++ +L H  L +L   + T E +     Y   G L + L+   +    + + +    ++
Sbjct: 60  NLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQ 117

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL--------------VKKT 179
           I   +  +      +RDL+  NIL+  +    + DF L+R +              +K T
Sbjct: 118 IAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWT 177

Query: 180 AFEKQSLNNNKF 191
           A E  ++N   F
Sbjct: 178 APE--AINYGTF 187

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 62/178 (34%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWEIRVLSRLS 81
             ++GKG+ G V     +A D   +   A+K++ +K           +A+ E+R+L  ++
Sbjct: 59  DSLIGKGSFGQVV----KAYDRVEQEWVAIKIIKNKKAFL------NQAQIEVRLLELMN 108

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-------------------------K 116
                      + D                ++                           +
Sbjct: 109 -----------KHD----------TEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLR 147

Query: 117 QNDRV-FSPSVIRFYLSEIICAIEHLHN--MGIAYRDLKPENILIRQSGH--VTLTDF 169
             +    S ++ R +  ++  A+  L    + I + DLKPENIL+       + + DF
Sbjct: 148 NTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDF 205

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARW- 72
           LD  N+   K++G G  G V     R   P+ +    A+K     TL  K     + R  
Sbjct: 42  LDATNISIDKVVGAGEFGEVCS--GRLKLPSKKEISVAIK-----TL--KVGYTEKQRRD 92

Query: 73  ---EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIR 128
              E  ++ +  HP + +L G +   + +     Y   G L    + +++D  F+   + 
Sbjct: 93  FLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL--DSFLRKHDAQFTVIQLV 150

Query: 129 FYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNN 188
             L  I   +++L +MG  +RDL   NILI  +    ++DF L R L         +   
Sbjct: 151 GMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTT-RG 209

Query: 189 NKFPV 193
            K P+
Sbjct: 210 GKIPI 214

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 27/199 (13%)

Query: 15  LDLDNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRA 70
              D L   K LG+G  G V     V      P      A+K++ D +T     +     
Sbjct: 78  FPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS-- 135

Query: 71  RWEIRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIR 128
             E+ ++  +  H  +  LLG+   D  L   V Y   G+L   LR ++   +     I 
Sbjct: 136 --EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIN 193

Query: 129 FYLSEIICAIEHLHNM------GIAY--------RDLKPENILIRQSGHVTLTDFDLSRN 174
               E +   + L +       G+ Y        RDL   N+L+ ++  + + DF L+R+
Sbjct: 194 RVPEEQMT-FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARD 252

Query: 175 LVKKTAFEKQSLNNNKFPV 193
           +     ++K +  N + PV
Sbjct: 253 INNIDYYKKTT--NGRLPV 269

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 30/197 (15%)

Query: 18  DNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWE 73
           D LK  K LG+GA G V                   A+K++ + +T             E
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTV--AVKMLKEGATHSEHRALMS----E 80

Query: 74  IRVLSRL-SHPFLPKLLG-SLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFY 130
           +++L  +  H  +  LLG   +    L   V +C  G+L   LR K+N+ V         
Sbjct: 81  LKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDL 140

Query: 131 LSEIICAIEHLHNM------GIAY--------RDLKPENILIRQSGHVTLTDFDLSRNLV 176
             + +  +EHL         G+ +        RDL   NIL+ +   V + DF L+R++ 
Sbjct: 141 YKDFLT-LEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIY 199

Query: 177 KKTAFEKQSLNNNKFPV 193
           K   + ++   + + P+
Sbjct: 200 KDPDYVRKG--DARLPL 214

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 21/186 (11%)

Query: 15  LDLDNLKALKI-LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW- 72
           L  DNL    I LG G  G+V     R      +   A+K      L  K   E+     
Sbjct: 6   LKRDNLLIADIELGCGNFGSVRQGVYRM--RKKQIDVAIK-----VL--KQGTEKADTEE 56

Query: 73  ---EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRY-KQNDRVFSPSVI 127
              E +++ +L +P++ +L+G  + +      V     GG L   ++          S +
Sbjct: 57  MMREAQIMHQLDNPYIVRLIGVCQAEAL--MLVMEMAGGGPL--HKFLVGKREEIPVSNV 112

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
              L ++   +++L      +RDL   N+L+    +  ++DF LS+ L    ++     +
Sbjct: 113 AELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR-S 171

Query: 188 NNKFPV 193
             K+P+
Sbjct: 172 AGKWPL 177

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 33/192 (17%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARC---PFALKVVDKSTLHAKHEAERRAR 71
           L++  LK L+ +GKG  G V L                 A+K      +     A+    
Sbjct: 190 LNMKELKLLQTIGKGEFGDVML---------GDYRGNKVAVK-----CIKNDATAQAFLA 235

Query: 72  WEIRVLSRLSHPFLPKLLG-SLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRF 129
            E  V+++L H  L +LLG  +E    L     Y   G L + LR  +   V     +  
Sbjct: 236 -EASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-SRGRSVLGGDCLLK 293

Query: 130 YLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL----------VKKT 179
           +  ++  A+E+L      +RDL   N+L+ +     ++DF L++            VK T
Sbjct: 294 FSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT 353

Query: 180 AFEKQSLNNNKF 191
           A E  +L   KF
Sbjct: 354 APE--ALREKKF 363

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 23/192 (11%)

Query: 18  DNLKALKILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWEI 74
           +NL+  K LG GA G V          +       A+K++  +     H  E+ A   E+
Sbjct: 46  NNLQFGKTLGAGAFGKVVEATAFGLGKEDAV-LKVAVKMLKSTA----HADEKEALMSEL 100

Query: 75  RVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLS 132
           +++S L  H  +  LLG+      +     YC  GDL N LR K       P+      +
Sbjct: 101 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANST 160

Query: 133 -----------EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
                      ++   +  L +    +RD+   N+L+       + DF L+R+++  + +
Sbjct: 161 ASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNY 220

Query: 182 EKQSLNNNKFPV 193
             +   N + PV
Sbjct: 221 IVKG--NARLPV 230

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 5   PPPQPQTTPSLDLDNLKALKI-LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK 63
           P         L  DNL    I LG G  G+V            +   A+K      L  K
Sbjct: 322 PEELKDKKLFLKRDNLLIADIELGCGNFGSVRQ--GVYRMRKKQIDVAIK-----VL--K 372

Query: 64  HEAERRARW----EIRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDL-NVLRYKQ 117
              E+        E +++ +L +P++ +L+G  + +      V     GG L   L    
Sbjct: 373 QGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEAL--MLVMEMAGGGPLHKFLV--G 428

Query: 118 NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL-- 175
                  S +   L ++   +++L      +R+L   N+L+    +  ++DF LS+ L  
Sbjct: 429 KREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGA 488

Query: 176 --------------VKKTAFEKQSLNNNKF 191
                         +K  A E   +N  KF
Sbjct: 489 DDSYYTARSAGKWPLKWYAPE--CINFRKF 516

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 41/173 (23%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIR 75
           +N     ++G G  G V+       D       ALK     +     E      +  EI 
Sbjct: 39  NNFDHKFLIGHGVFGKVY--KGVLRDGA---KVALKRRTPESSQGIEE------FETEIE 87

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYK--QN----DRVFSPSVIRF 129
            LS   HP L  L+G             +C   +  +L YK  +N      ++   +   
Sbjct: 88  TLSFCRHPHLVSLIG-------------FCDERNEMILIYKYMENGNLKRHLYGSDLPTM 134

Query: 130 YLS-EI---ICA-----IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            +S E    IC      + +LH   I +RD+K  NIL+ ++    +TDF +S+
Sbjct: 135 SMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISK 187

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 34/202 (16%)

Query: 18  DNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWE 73
            NL   K LG+G  G V      H +          A+K++ + ++     +       E
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTV--AVKMLKENASPSELRDLLS----E 76

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLS 132
             VL +++HP + KL G+   D  L   V Y   G L   LR  +              S
Sbjct: 77  FNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNS 136

Query: 133 ---------------------EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL 171
                                +I   +++L  M + +RDL   NIL+ +   + ++DF L
Sbjct: 137 SSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGL 196

Query: 172 SRNLVKKTAFEKQSLNNNKFPV 193
           SR++ ++ ++ K+S    + PV
Sbjct: 197 SRDVYEEDSYVKRS--QGRIPV 216

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 11/181 (6%)

Query: 15  LDLDNLK-ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           LD   L    K LG G  GTV   + +          A+K++         + E  A  E
Sbjct: 13  LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVK--TVAVKILKNEANDPALKDELLA--E 68

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             V+ +L +P++ +++G  E + +    V      G L   +Y Q +R      I   + 
Sbjct: 69  ANVMQQLDNPYIVRMIGICEAESW--MLVMEMAELGPL--NKYLQQNRHVKDKNIIELVH 124

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++   +++L      +RDL   N+L+    +  ++DF LS+ L     + K    + K+P
Sbjct: 125 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ-THGKWP 183

Query: 193 V 193
           V
Sbjct: 184 V 184

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 34/202 (16%)

Query: 18  DNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRA-RWE 73
           +NL+  K+LG GA G V             + +   A+K++ +        +ER A   E
Sbjct: 45  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQV--AVKMLKEKA----DSSEREALMSE 98

Query: 74  IRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYL 131
           ++++++L SH  +  LLG+      +     YC  GDL N LR K+              
Sbjct: 99  LKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQK 158

Query: 132 SE--------------IICAI------EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL 171
                           +  A       E L      +RDL   N+L+     V + DF L
Sbjct: 159 RLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGL 218

Query: 172 SRNLVKKTAFEKQSLNNNKFPV 193
           +R+++  + +  +   N + PV
Sbjct: 219 ARDIMSDSNYVVRG--NARLPV 238

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 25/195 (12%)

Query: 18  DNLKALKILGKGAMGTVF---LVHDRAADPTARCPFALKVV-DKSTLHAKHEAERRARWE 73
           D L   K LG+GA G V     +      P      A+K++   +T     +       E
Sbjct: 69  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS----E 124

Query: 74  IRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYL 131
           + ++  +  H  +  LLG+   D  L   V Y   G+L   L+ ++   +          
Sbjct: 125 MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNP 184

Query: 132 SEIICAI-------------EHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK 178
            E + +              E+L +    +RDL   N+L+ +   + + DF L+R++   
Sbjct: 185 EEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 244

Query: 179 TAFEKQSLNNNKFPV 193
             ++K +  N + PV
Sbjct: 245 DYYKKTT--NGRLPV 257

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 47/199 (23%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVV----DKSTLHAKHEAERRARWE 73
           + L+  + +G+G  G VF             P A+K++          +  +       E
Sbjct: 20  EKLQRCEKIGEGVFGEVFQTIAD------HTPVAIKIIAIEGPDLVNGSHQKTFEEILPE 73

Query: 74  IRVLSRL---------SHPFLPKLL------GSLETDEFLAWAVPYCPGGDLN------- 111
           I +   L                L       GS       AW       G  N       
Sbjct: 74  IIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFK 133

Query: 112 ------VLRY--------KQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENI 156
                 VL +        +   ++ S +  +  L ++  ++      +   +RDL   N+
Sbjct: 134 DDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV 193

Query: 157 LIRQSGHVTLTDFDLSRNL 175
           L++++    L      ++ 
Sbjct: 194 LLKKTSLKKLHYTLNGKSS 212

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 63/427 (14%), Positives = 127/427 (29%), Gaps = 138/427 (32%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPT----ARCPFALKVVDKSTLHAKHEAERR- 69
           L L N++  K      +    L+  R    T    A     + +   S      E +   
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 70  ARW-EIRV--LSR---LSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFS 123
            ++ + R   L R    ++P    ++     D    W          +  ++   D+   
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW----------DNWKHVNCDK--- 354

Query: 124 PSVIRFYLSEII-CAIEHL--HNMGIAYRDLK--PENILIRQSGHVTLT------DFDLS 172
                  L+ II  ++  L        +  L   P +  I       L+           
Sbjct: 355 -------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDV 404

Query: 173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHAL-------PENKTGLKKTK 225
             +V K    K SL         V + PK      T  + ++        EN+  L ++ 
Sbjct: 405 MVVVNK--LHKYSL---------VEKQPKES----TISIPSIYLELKVKLENEYALHRSI 449

Query: 226 SARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGT 285
                      ++FD+           + + P  +  D + +      +G   + +    
Sbjct: 450 VDHY----NIPKTFDS-----------DDLIPPYL--DQYFY----SHIG---HHL---- 481

Query: 286 TPFRGKNRKETFRNVLMKTPEFVGQR-----------TALTDLIQRLLEKDPVKRLGYLR 334
                  R   FR V +    F+ Q+            ++ + +Q+ L+        Y  
Sbjct: 482 KNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQ-LKF-------Y-- 530

Query: 335 GACEIKEHVFFKGVRWD-LLTDVLRPPFIPSREEN-------DLTEKAMS--GGGVDIRE 384
                K ++     +++ L+  +L   F+P  EEN       DL   A+      +    
Sbjct: 531 -----KPYICDNDPKYERLVNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAI---- 579

Query: 385 YFENLRA 391
           + E  + 
Sbjct: 580 FEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 59/435 (13%), Positives = 122/435 (28%), Gaps = 114/435 (26%)

Query: 17  LDNLKALKIL---GKGAMG-TVFLVHDRAADPTARCPFALKV-------VDKSTLHAKHE 65
           L  L+  K +   G    G T  +  D       +C    K+        +      +  
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 66  AERRARWEIRVLSRLSHPFLPKLLGSLETDE----FLAWAVPYCPGGDLNVLRYKQNDRV 121
            +   + +    SR  H    KL       E      +     C    L VL       V
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC----LLVL-----LNV 253

Query: 122 FSPSVIR-FYLSEIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKT 179
            +      F    + C I  L    +  R  +  + L    + H++L            T
Sbjct: 254 QNAKAWNAF---NLSCKI--L----LTTRFKQVTDFLSAATTTHISLDHH-------SMT 297

Query: 180 AFEKQSLN------NNKFPVLP---VTENP----------KRHRRILTRWLHALPENKTG 220
               +  +      + +   LP   +T NP          +        W H   +  T 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 221 LKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS-PEVVRGDGHEFAVDWWALGILTY 279
           + ++    + P   R+  FD                 P ++       ++ W+ +  +  
Sbjct: 358 IIESSLNVLEPAEYRKM-FD------RLSVFPPSAHIPTIL------LSLIWFDV--IKS 402

Query: 280 EMLYGTTPFRG-----KNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKR----- 329
           +++             K  KE+  ++     E   +      L + +++   + +     
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 330 --------------LGY-LRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKA 374
                         +G+ L+     +    F+     +  D  R  F+  +  +D T   
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLD-FR--FLEQKIRHDSTAWN 515

Query: 375 MSGGGV----DIREY 385
            SG  +     ++ Y
Sbjct: 516 ASGSILNTLQQLKFY 530

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWEIRV 76
           D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E+++
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---ELKI 78

Query: 77  LSRL-SHPFLPKLLG-SLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSE 133
           L  +  H  +  LLG   +    L   V +C  G+L   LR K+N+          Y ++
Sbjct: 79  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNE-------FVPYKTK 131

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
                +    +G    DLK     I  S     + F   ++L
Sbjct: 132 GARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL 173

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 23/158 (14%)

Query: 25  ILGKGAMGTVF--LVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            +G+G  G V+   V++           A+K +         E +++   EI+V+++  H
Sbjct: 38  KMGEGGFGVVYKGYVNNT--------TVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89

Query: 83  PFLPKLLG-SLETDEFLAWAV-PYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIIC--- 136
             L +LLG S + D+     V  Y P G L + L         S   +R    +I     
Sbjct: 90  ENLVELLGFSSDGDDLC--LVYVYMPNGSLLDRLSCLDGTPPLSWH-MRC---KIAQGAA 143

Query: 137 -AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
             I  LH     +RD+K  NIL+ ++    ++DF L+R
Sbjct: 144 NGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	100.0
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.96
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.94
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.88
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.8
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.46
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.29
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.24
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	99.16
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.95
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.71
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.61
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.48
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.36
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.27
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.23
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.18
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.82
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.66
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.66
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.6
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.22
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.17
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.15
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.14
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.05
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.01
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.0
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	96.97
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	96.64
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.63
3mes_A	424	Choline kinase; malaria, structural genomics, stru	95.57
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	94.73
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	84.02

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.4e-71  Score=532.94  Aligned_cols=279  Identities=36%  Similarity=0.590  Sum_probs=243.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|+++++||+|+||+||+|+++.++.    .||||++.+..+.. ....+.+.+|+++|++++|||||+++++|+
T Consensus        28 ~~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~----~~AiK~i~k~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~~  102 (311)
T 4aw0_A           28 KKRPEDFKFGKILGEGSFSTVVLARELATSR----EYAIKILEKRHIIK-ENKVPYVTRERDVMSRLDHPFFVKLYFTFQ  102 (311)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             CCCccccEEEEEEecccCeEEEEEEECCCCC----EEEEEEEEHHHCCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            3557899999999999999999999988654    49999998876533 234567888999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +++.+|||||||.||+|.+++....  .++|.+++.|+.||+.||+|||++|||||||||+|||++.+|++||+|||+|+
T Consensus       103 ~~~~~yivmEy~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~  180 (311)
T 4aw0_A          103 DDEKLYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK  180 (311)
T ss_dssp             CSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eCCEEEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCce
Confidence            9999999999999999998887654  49999999999999999999999999999999999999999999999999998


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+...                                                             .......++|||+.
T Consensus       181 ~~~~~-------------------------------------------------------------~~~~~~~~~~GTp~  199 (311)
T 4aw0_A          181 VLSPE-------------------------------------------------------------SKQARANSFVGTAQ  199 (311)
T ss_dssp             ECCTT-------------------------------------------------------------TTCCCBCCCCSCGG
T ss_pred             ecCCC-------------------------------------------------------------CCcccccCcccCcc
Confidence            65211                                                             12234567899999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |||||++.+..|+.++|||||||++|+|++|++||.+.+..+++.+|+...+.++ ..+++++|||.+||++||++|++.
T Consensus       200 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~  279 (311)
T 4aw0_A          200 YVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC  279 (311)
T ss_dssp             GCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTS
T ss_pred             cCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHhHCcCh
Confidence            9999999999999999999999999999999999999999999999998776665 468999999999999999999953


Q ss_pred             C--CChhhhhcCCCCCCCCchhhcccCCCCC
Q 042539          333 L--RGACEIKEHVFFKGVRWDLLTDVLRPPF  361 (412)
Q Consensus       333 ~--~~~~e~l~h~ff~~~~~~~~~~~~~pp~  361 (412)
                      .  ....++++||||++++|+.+... .||.
T Consensus       280 ~e~~~~~~i~~Hp~F~~idw~~l~~~-~pP~  309 (311)
T 4aw0_A          280 EEMEGYGPLKAHPFFESVTWENLHQQ-TPPK  309 (311)
T ss_dssp             GGGTCHHHHHTSGGGTTCCCTTGGGS-CCCC
T ss_pred             HHHcCCHHHHCCCCcCCCCHHHhcCC-CCCC
Confidence            1  12234799999999999988664 3444

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.7e-70  Score=523.69  Aligned_cols=283  Identities=40%  Similarity=0.729  Sum_probs=241.0

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+..++|++++.||+|+||+||+|++... ..+++.||||++++.......  ..++.+|+++|++++|||||+++++|
T Consensus        19 ~~~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~-~~~~~~vAiK~i~~~~~~~~~--~~~~~~E~~il~~l~HpnIv~l~~~~   95 (304)
T 3ubd_A           19 EKADPSQFELLKVLGQGSFGKVFLVKKISG-SDARQLYAMKVLKKATLKVRD--RVRTKMERDILVEVNHPFIVKLHYAF   95 (304)
T ss_dssp             CCCCGGGEEEEEEEECGGGCEEEEEEECSS-TTTTCEEEEEEEESEEEEEEE--CC------CCCCCCCCTTEECEEEEE
T ss_pred             ccCCccccEEEEEEecCCCeEEEEEEEccC-CCCCEEEEEEEEehHHcChHH--HHHHHHHHHHHHHCCCCCCCeEEEEE
Confidence            345678999999999999999999997543 235677999999876543222  23566799999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ++++.+|||||||.||+|..++....  .+++.+++.|+.||+.||+|||++|||||||||+|||++.+|++||+|||+|
T Consensus        96 ~~~~~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla  173 (304)
T 3ubd_A           96 QTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS  173 (304)
T ss_dssp             EETTEEEEEECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEE
T ss_pred             EECCEEEEEEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccc
Confidence            99999999999999999998887654  4999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....                                                               ......+++||+
T Consensus       174 ~~~~~---------------------------------------------------------------~~~~~~~~~GT~  190 (304)
T 3ubd_A          174 KESID---------------------------------------------------------------HEKKAYSFCGTV  190 (304)
T ss_dssp             EC--------------------------------------------------------------------CCCCSCCCCG
T ss_pred             eeccC---------------------------------------------------------------CCccccccccCc
Confidence            75421                                                               122345679999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      .|||||++.+..|+.++|||||||++|||++|++||.+.+..+++.++....+.++ .+++++++||.+||++||++|++
T Consensus       191 ~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t  270 (304)
T 3ubd_A          191 EYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLG  270 (304)
T ss_dssp             GGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred             ccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCC
Confidence            99999999999999999999999999999999999999999999999988776655 46899999999999999999997


Q ss_pred             CC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCC
Q 042539          332 YL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIP  363 (412)
Q Consensus       332 ~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p  363 (412)
                      .. .+++|+++||||++++|+.+.. ...|||+|
T Consensus       271 a~~~~~~eil~Hp~f~~idw~~l~~~~~~pP~~P  304 (304)
T 3ubd_A          271 AGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKP  304 (304)
T ss_dssp             CSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSSCC
T ss_pred             CCcCCHHHHHcCccccCCCHHHHHhCCCCcCcCC
Confidence            53 2478999999999999987654 56888887

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.3e-67  Score=511.74  Aligned_cols=259  Identities=25%  Similarity=0.436  Sum_probs=226.2

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|+++++||+|+||+||+|+++.++.    .||||++.+.....  .....+.+|+++|++|+|||||+++++|+++
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~----~vAiK~i~~~~~~~--~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~   95 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGR----QYVIKEINISRMSS--KEREESRREVAVLANMKHPNIVQYRESFEEN   95 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCC----EEEEEEEECTTSCH--HHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCC----EEEEEEEehHHCCH--HHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC
Confidence            46899999999999999999999987554    49999998776532  3466788999999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|||||||.||+|.+++..+....+++.+++.|+.||+.||+|||++|||||||||+||||+.+|.+||+|||+|+.+
T Consensus        96 ~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  175 (350)
T 4b9d_A           96 GSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVL  175 (350)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCC
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceee
Confidence            99999999999999999988776667899999999999999999999999999999999999999999999999999865


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      .....                                                               ...+++||+.||
T Consensus       176 ~~~~~---------------------------------------------------------------~~~~~~GT~~Ym  192 (350)
T 4b9d_A          176 NSTVE---------------------------------------------------------------LARACIGTPYYL  192 (350)
T ss_dssp             CHHHH---------------------------------------------------------------HHHHHHSCCTTC
T ss_pred             cCCcc---------------------------------------------------------------cccccCCCcccc
Confidence            32211                                                               123568999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |||++.+..|+.++|||||||++|||++|++||.+.+..+++.+++....  ....+++++++||.+||++||++||   
T Consensus       193 APE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~---  269 (350)
T 4b9d_A          193 SPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRP---  269 (350)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSC---
T ss_pred             CHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCChhHCc---
Confidence            99999999999999999999999999999999999999999999887653  2345789999999999999999999   


Q ss_pred             CChhhhhcCCCCCC
Q 042539          334 RGACEIKEHVFFKG  347 (412)
Q Consensus       334 ~~~~e~l~h~ff~~  347 (412)
                       +++|+++||||+.
T Consensus       270 -s~~e~l~hp~~~~  282 (350)
T 4b9d_A          270 -SVNSILEKGFIAK  282 (350)
T ss_dssp             -CHHHHHTSHHHHT
T ss_pred             -CHHHHhcCHHhhc
Confidence             6999999999975

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.1e-66  Score=490.16  Aligned_cols=257  Identities=29%  Similarity=0.466  Sum_probs=211.8

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ..+++|++++.||+|+||+||+|+++.++.    .||||++.+..... .....++.+|+++|++++|||||+++++|++
T Consensus        10 ~~ig~Y~i~~~lG~G~fg~V~~~~~~~~~~----~vAiK~i~~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~   84 (275)
T 3hyh_A           10 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQ----KVALKIINKKVLAK-SDMQGRIEREISYLRLLRHPHIIKLYDVIKS   84 (275)
T ss_dssp             ----CCEEEEEEEC---CCEEEEECTTTCC----EEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             CEeeCeEEEEEEecCcCeEEEEEEECCCCC----EEEEEEEeHHHcCC-HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE
Confidence            357899999999999999999999887554    49999998765532 3445678899999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.+|+||||| +|+|.+++...  +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+.
T Consensus        85 ~~~~~ivmEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~  161 (275)
T 3hyh_A           85 KDEIIMVIEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNI  161 (275)
T ss_dssp             SSEEEEEEECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC--
T ss_pred             CCEEEEEEeCC-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCee
Confidence            99999999999 77888777654  4599999999999999999999999999999999999999999999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ..                                                                ......+.+||+.|
T Consensus       162 ~~----------------------------------------------------------------~~~~~~~~~GT~~Y  177 (275)
T 3hyh_A          162 MT----------------------------------------------------------------DGNFLKTSCGSPNY  177 (275)
T ss_dssp             -----------------------------------------------------------------------------CTT
T ss_pred             cC----------------------------------------------------------------CCCccCCeeECccc
Confidence            42                                                                11223467999999


Q ss_pred             ccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC
Q 042539          255 VSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       255 ~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ||||++.+..| +.++|||||||++|+|++|++||.+.+..+++.++....+.++ ..++++++||.+||++||++|+  
T Consensus       178 ~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~--  255 (275)
T 3hyh_A          178 AAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRI--  255 (275)
T ss_dssp             SCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSC--
T ss_pred             CChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCChhHCc--
Confidence            99999999887 6899999999999999999999999999999999988776664 4689999999999999999999  


Q ss_pred             CCChhhhhcCCCCCC
Q 042539          333 LRGACEIKEHVFFKG  347 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~  347 (412)
                        +++|+++||||+.
T Consensus       256 --s~~eil~hpw~k~  268 (275)
T 3hyh_A          256 --SIHEIMQDDWFKV  268 (275)
T ss_dssp             --CHHHHHHCHHHHT
T ss_pred             --CHHHHHcCccccc
Confidence              6999999999963

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1e-65  Score=499.34  Aligned_cols=253  Identities=24%  Similarity=0.391  Sum_probs=224.6

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|+++++||+|+||+||+|+++.++.    .||||++++.....    .+.+.+|+++|+.++|||||+++++|++++.
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~----~vAiK~i~~~~~~~----~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~  145 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGK----LVAVKKMDLRKQQR----RELLFNEVVIMRDYQHENVVEMYNSYLVGDE  145 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEGGGCSS----GGGGHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCC----EEEEEEEecCchhH----HHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            569999999999999999999988654    49999997654322    3456779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|||||||.||+|..++..   +.+++.+++.|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+..
T Consensus       146 ~~ivmEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  222 (346)
T 4fih_A          146 LWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  222 (346)
T ss_dssp             EEEEECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             EEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCC
Confidence            9999999999999988764   2499999999999999999999999999999999999999999999999999986521


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ......++|||+.||||
T Consensus       223 ---------------------------------------------------------------~~~~~~~~~GTp~YmAP  239 (346)
T 4fih_A          223 ---------------------------------------------------------------EVPRRKSLVGTPYWMAP  239 (346)
T ss_dssp             ---------------------------------------------------------------SSCCBCCCCSCGGGCCH
T ss_pred             ---------------------------------------------------------------CCCcccccccCcCcCCH
Confidence                                                                           12334578999999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |++.+..|+.++|||||||++|||++|++||.+.+..+++..+....+.    +..++++++|||.+||++||++|+   
T Consensus       240 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~---  316 (346)
T 4fih_A          240 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA---  316 (346)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSC---
T ss_pred             HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCc---
Confidence            9999999999999999999999999999999999999988888765432    235689999999999999999999   


Q ss_pred             CChhhhhcCCCCCCC
Q 042539          334 RGACEIKEHVFFKGV  348 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~  348 (412)
                       +++|+++||||+..
T Consensus       317 -ta~e~l~Hp~~~~~  330 (346)
T 4fih_A          317 -TAAELLKHPFLAKA  330 (346)
T ss_dssp             -CHHHHTTCGGGGGC
T ss_pred             -CHHHHhcCHhhcCC
Confidence             79999999999853

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=5.3e-65  Score=528.40  Aligned_cols=287  Identities=32%  Similarity=0.610  Sum_probs=243.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH--HHHHHHHHHHHHHhhcCCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH--EAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ...+++++|+++++||+|+||+||+|+++.++.    .||||++++..+....  .......+++.+++.++|||||+++
T Consensus       183 ~~~~slddf~i~k~LG~G~fG~V~la~~~~tg~----~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~  258 (689)
T 3v5w_A          183 NIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGK----MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMS  258 (689)
T ss_dssp             TCCCCGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEE
T ss_pred             CCCCchHHeEEEEEEecccCeEEEEEEECCCCC----EEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEE
Confidence            346889999999999999999999999988654    4999999887653222  2223333456777788899999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      ++|++.+.+|||||||.||+|..++....  .|++..++.|++||+.||+|||++|||||||||+||||+.+|++||+||
T Consensus       259 ~~f~~~~~lylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DF  336 (689)
T 3v5w_A          259 YAFHTPDKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDL  336 (689)
T ss_dssp             EEEECSSEEEEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCC
T ss_pred             EEEEECCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEeccc
Confidence            99999999999999999999998887654  5999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+.+.                                                                 .....++|
T Consensus       337 GlA~~~~-----------------------------------------------------------------~~~~~t~~  351 (689)
T 3v5w_A          337 GLACDFS-----------------------------------------------------------------KKKPHASV  351 (689)
T ss_dssp             TTCEECS-----------------------------------------------------------------SCCCCSCC
T ss_pred             ceeeecC-----------------------------------------------------------------CCCCCCcc
Confidence            9997542                                                                 12234679


Q ss_pred             cCCCCccceeec-CCCCCchhhHHHHHHHHHHHhhCCCCCCCC---CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhh
Q 042539          250 GTEEYVSPEVVR-GDGHEFAVDWWALGILTYEMLYGTTPFRGK---NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEK  324 (412)
Q Consensus       250 gt~~Y~APE~l~-~~~~~~~~DiwSlGvil~ell~g~~Pf~~~---~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~  324 (412)
                      ||+.|||||++. +..|+.++|||||||++|||++|++||.+.   +..+++..+......++ .+++++++||.+||++
T Consensus       352 GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~  431 (689)
T 3v5w_A          352 GTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQR  431 (689)
T ss_dssp             SCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             CCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCCHHHHHHHHHHccC
Confidence            999999999996 468999999999999999999999999763   45566677776665554 5789999999999999


Q ss_pred             CCCccCCCC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCch
Q 042539          325 DPVKRLGYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEND  369 (412)
Q Consensus       325 dP~~R~~~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~~  369 (412)
                      ||.+|+++. .+++|+++||||++++|+.+.. ...|||+|......
T Consensus       432 dP~~Rl~~~~~ga~ei~~HpfF~~idW~~l~~~~~~pP~~P~~~~~~  478 (689)
T 3v5w_A          432 DVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVN  478 (689)
T ss_dssp             CGGGCTTCSSSTHHHHTTSGGGTTCCHHHHHTTCSCCSCCCCTTCSS
T ss_pred             CHhHCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCcCccCCCCCCC
Confidence            999999863 4699999999999999997754 67899999765543

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.5e-64  Score=501.33  Aligned_cols=253  Identities=24%  Similarity=0.390  Sum_probs=224.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|+++++||+|+||+||+|+++.++.    .||||++.+.....    .+.+.+|+.+|+.++|||||+++++|++++.
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~----~vAiK~i~~~~~~~----~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~  222 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGK----LVAVKKMDLRKQQR----RELLFNEVVIMRDYQHENVVEMYNSYLVGDE  222 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEESTTCSS----GGGHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCC----EEEEEEEeccchhH----HHHHHHHHHHHHhCCCCCCCceEEEEEECCE
Confidence            569999999999999999999988654    49999997654322    3456789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|||||||.||+|..++...   .+++.+++.|+.||+.||+|||++|||||||||+||||+.+|.+||+|||+|+.+. 
T Consensus       223 ~~iVmEy~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~-  298 (423)
T 4fie_A          223 LWVVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS-  298 (423)
T ss_dssp             EEEEEECCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECC-
T ss_pred             EEEEEeCCCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECC-
Confidence            99999999999999887643   49999999999999999999999999999999999999999999999999998652 


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                    .......++|||+.||||
T Consensus       299 --------------------------------------------------------------~~~~~~~~~~GTp~YmAP  316 (423)
T 4fie_A          299 --------------------------------------------------------------KEVPRRKSLVGTPYWMAP  316 (423)
T ss_dssp             --------------------------------------------------------------SSCCCBCCCEECTTTCCH
T ss_pred             --------------------------------------------------------------CCCccccccccCcCcCCH
Confidence                                                                          122334578999999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC----CCCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP----EFVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~----~~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |++.+..|+.++|||||||++|||++|++||.+.+..+.+..+....+    ....+++++++||.+||++||++|+   
T Consensus       317 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~---  393 (423)
T 4fie_A          317 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA---  393 (423)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSC---
T ss_pred             HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCc---
Confidence            999999999999999999999999999999999999998888876542    2345789999999999999999999   


Q ss_pred             CChhhhhcCCCCCCC
Q 042539          334 RGACEIKEHVFFKGV  348 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~  348 (412)
                       +++|+++||||+..
T Consensus       394 -ta~ell~Hp~~~~~  407 (423)
T 4fie_A          394 -TAAELLKHPFLAKA  407 (423)
T ss_dssp             -CHHHHTTCGGGGGC
T ss_pred             -CHHHHhcCHHhcCC
Confidence             79999999999853

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=7.3e-63  Score=469.70  Aligned_cols=251  Identities=22%  Similarity=0.361  Sum_probs=212.3

Q ss_pred             Cc-eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe---
Q 042539           19 NL-KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET---   94 (412)
Q Consensus        19 ~y-~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~---   94 (412)
                      +| ++.++||+|+||+||+|+++.++.    .||+|++.+....  ....+++.+|+++|++++|||||+++++|++   
T Consensus        26 r~~~~~~~iG~G~fg~Vy~a~~~~~~~----~vAiK~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~   99 (290)
T 3fpq_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTV----EVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVK   99 (290)
T ss_dssp             SEEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEGGGSC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEET
T ss_pred             ceEEeeeEEecCcCcEEEEEEECCCCe----EEEEEEEchhhCC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccC
Confidence            44 788899999999999999987554    4999999776543  2345678899999999999999999999975   


Q ss_pred             -CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEcc-CCCEEEcccc
Q 042539           95 -DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQ-SGHVTLTDFD  170 (412)
Q Consensus        95 -~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~-~g~vkL~DFG  170 (412)
                       ++.+|||||||.||+|..++....  .+++.+++.|+.||+.||+|||++|  ||||||||+|||++. +|.+||+|||
T Consensus       100 ~~~~~~lvmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFG  177 (290)
T 3fpq_A          100 GKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLG  177 (290)
T ss_dssp             TEEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTT
T ss_pred             CCcEEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCc
Confidence             356999999999999999887654  4999999999999999999999999  999999999999985 7999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+..                                                                 ......+++|
T Consensus       178 la~~~-----------------------------------------------------------------~~~~~~~~~G  192 (290)
T 3fpq_A          178 LATLK-----------------------------------------------------------------RASFAKAVIG  192 (290)
T ss_dssp             GGGGC-----------------------------------------------------------------CTTSBEESCS
T ss_pred             CCEeC-----------------------------------------------------------------CCCccCCccc
Confidence            99642                                                                 1123346799


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcCCCC--C-CCCChHHHHHHHHhhhhCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKTPE--F-VGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~~~~--~-~~~~~~~~dli~~~L~~dP  326 (412)
                      |+.|||||++.+ .|+.++|||||||++|||+||++||.+.+ ...++..+......  + ...++++++||.+||++||
T Consensus       193 Tp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP  271 (290)
T 3fpq_A          193 TPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNK  271 (290)
T ss_dssp             SCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSG
T ss_pred             CccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCCh
Confidence            999999999876 59999999999999999999999998754 44555555544321  1 2457899999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCCC
Q 042539          327 VKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ++||    +++|+++||||++
T Consensus       272 ~~R~----s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          272 DERY----SIKDLLNHAFFQE  288 (290)
T ss_dssp             GGSC----CHHHHHTSGGGC-
T ss_pred             hHCc----CHHHHhcCccccC
Confidence            9999    6999999999974

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.9e-63  Score=481.94  Aligned_cols=257  Identities=23%  Similarity=0.310  Sum_probs=218.4

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ...++|++.++||+|+||+||+|+++.++.    .||||+++++...         .+|+.+|+.++|||||+++++|++
T Consensus        55 ~~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~----~vAiK~i~~~~~~---------~~E~~il~~l~HpnIV~l~~~~~~  121 (336)
T 4g3f_A           55 EEVHWMTHQPRVGRGSFGEVHRMKDKQTGF----QCAVKKVRLEVFR---------VEELVACAGLSSPRIVPLYGAVRE  121 (336)
T ss_dssp             BTTTEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEETTTCC---------THHHHTTTTCCCTTBCCEEEEEEE
T ss_pred             cchhheEeCcEeccCCCeEEEEEEECCCCC----EEEEEEECHHHhH---------HHHHHHHHhCCCCCCCcEEEEEEE
Confidence            345789999999999999999999988654    4999999765432         249999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEccccccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDLSR  173 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFGla~  173 (412)
                      ++.+|||||||+||+|..++....  .+++.+++.|+.||+.||+|||++|||||||||+||||+.+| ++||+|||+|+
T Consensus       122 ~~~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~  199 (336)
T 4g3f_A          122 GPWVNIFMELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHAL  199 (336)
T ss_dssp             TTEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCE
T ss_pred             CCEEEEEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCe
Confidence            999999999999999999887654  499999999999999999999999999999999999999998 69999999998


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+......                                                          .......+++||+.
T Consensus       200 ~~~~~~~~----------------------------------------------------------~~~~~~~~~~GT~~  221 (336)
T 4g3f_A          200 CLQPDGLG----------------------------------------------------------KSLLTGDYIPGTET  221 (336)
T ss_dssp             EC----------------------------------------------------------------------CCCCCCGG
T ss_pred             EccCCCcc----------------------------------------------------------cceecCCccccCcc
Confidence            65321100                                                          01112346789999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCCcc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |||||++.+..|+.++|||||||++|||++|++||.+.+..+++.++....+.    .+.+++++++||.+||++||.+|
T Consensus       222 YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  301 (336)
T 4g3f_A          222 HMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHR  301 (336)
T ss_dssp             GCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             ccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHC
Confidence            99999999999999999999999999999999999998877777788776543    24678999999999999999999


Q ss_pred             CCCCCChhhh-------------hcCCCCCCC
Q 042539          330 LGYLRGACEI-------------KEHVFFKGV  348 (412)
Q Consensus       330 ~~~~~~~~e~-------------l~h~ff~~~  348 (412)
                      |    ++.|+             ++|||+...
T Consensus       302 ~----sa~el~~~l~~~l~~~~~l~hPw~~~~  329 (336)
T 4g3f_A          302 A----SAMELRRKVGKALQEVGGLKSPWKGEY  329 (336)
T ss_dssp             C----CHHHHHHHHHHHHHHTTSSCSCSSSSC
T ss_pred             c----CHHHHHHHHHHHHhhhhhccCCCcCCC
Confidence            9    68887             567777643

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.6e-62  Score=485.35  Aligned_cols=273  Identities=22%  Similarity=0.367  Sum_probs=225.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe---
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET---   94 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~---   94 (412)
                      ++|+++++||+|+||+||+|+++.++.    .||||++++...  .....+++++|+++|+.++|||||++++++..   
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~----~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~  127 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQ----QVAIKKIPNAFD--VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVP  127 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEETTTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCC----EEEEEEECcccc--chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccc
Confidence            579999999999999999999988654    499999976543  23345678889999999999999999998764   


Q ss_pred             ---CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           95 ---DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        95 ---~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                         .+.+|||||||. |+|..++..  .+.+++.+++.|+.||+.||+|||++|||||||||+|||++.+|.+||+|||+
T Consensus       128 ~~~~~~~~ivmE~~~-g~L~~~i~~--~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGl  204 (398)
T 4b99_A          128 YGEFKSVYVVLDLME-SDLHQIIHS--SQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGM  204 (398)
T ss_dssp             TTTCCCEEEEEECCS-EEHHHHHTS--SSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             cccCCEEEEEEeCCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecce
Confidence               368999999996 568777654  34699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.+.....                                                           .......+++||
T Consensus       205 a~~~~~~~~-----------------------------------------------------------~~~~~~~~~~GT  225 (398)
T 4b99_A          205 ARGLCTSPA-----------------------------------------------------------EHQYFMTEYVAT  225 (398)
T ss_dssp             CBCC------------------------------------------------------------------CCCCCSSCCC
T ss_pred             eeecccCcc-----------------------------------------------------------ccccccccceeC
Confidence            986532110                                                           122344578999


Q ss_pred             CCCccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CC----------------------
Q 042539          252 EEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PE----------------------  306 (412)
Q Consensus       252 ~~Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~----------------------  306 (412)
                      +.|||||++.+.. |+.++||||+|||+|||++|++||.+.+..+++..|+...  +.                      
T Consensus       226 ~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~  305 (398)
T 4b99_A          226 RWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPR  305 (398)
T ss_dssp             CTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCC
T ss_pred             hHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCc
Confidence            9999999998864 5999999999999999999999999999988888775321  10                      


Q ss_pred             --------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCC
Q 042539          307 --------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFI  362 (412)
Q Consensus       307 --------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~  362 (412)
                              ++..++++.|||.+||++||.+|+    |++|+|+||||+............++|.
T Consensus       306 ~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~----ta~e~L~Hp~f~~~~~p~~~p~~~~~~~  365 (398)
T 4b99_A          306 QPVPWETVYPGADRQALSLLGRMLRFEPSARI----SAAAALRHPFLAKYHDPDDEPDCAPPFD  365 (398)
T ss_dssp             CCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSC----CHHHHTTSGGGTTTCCGGGSCCCSSCCC
T ss_pred             CCCCHHHhCCCCCHHHHHHHHHHCcCChhHCc----CHHHHhcCHhhCcCCCCccccCCCCCCC
Confidence                    234678999999999999999999    7999999999998765444333444543

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.1e-61  Score=462.67  Aligned_cols=270  Identities=25%  Similarity=0.433  Sum_probs=201.5

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++++.||+|+||+||+|+++.++.    .||||++++..   .....+++.+|+++|++|+|||||+++++|.+.+
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~----~vAiK~i~~~~---~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~   76 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDC----NYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLEKN   76 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCC----EEEEEEEEECS---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCC----EEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecC
Confidence            4689999999999999999999987554    49999997653   2344567889999999999999999999997654


Q ss_pred             ------------eEEEEeeccCCCCchhHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           97 ------------FLAWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        97 ------------~~~lv~e~~~gg~L~~~~~~~~~-~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                                  .+|+|||||.||+|.+++..... ...++..++.++.||+.||+|||++|||||||||+|||++.+|.
T Consensus        77 ~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~  156 (299)
T 4g31_A           77 TTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDV  156 (299)
T ss_dssp             ----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCC
T ss_pred             ccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCc
Confidence                        47999999999999988865432 12345678999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+|+.+.........                                                   ........
T Consensus       157 vKl~DFGla~~~~~~~~~~~~---------------------------------------------------~~~~~~~~  185 (299)
T 4g31_A          157 VKVGDFGLVTAMDQDEEEQTV---------------------------------------------------LTPMPAYA  185 (299)
T ss_dssp             EEECCCCCC-----------------------------------------------------------------------
T ss_pred             EEEccCccceecCCCcccccc---------------------------------------------------cccccccc
Confidence            999999999876432110000                                                   00001122


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHhcCC-C-CCCCCChHHHHHHHH
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLMKT-P-EFVGQRTALTDLIQR  320 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~~~~-~-~~~~~~~~~~dli~~  320 (412)
                      ...+.+||+.|||||++.+..|+.++|||||||++|||++   ||.+... ...+..+.... + .+...++.+.+||.+
T Consensus       186 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~  262 (299)
T 4g31_A          186 RHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQD  262 (299)
T ss_dssp             ------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHH
T ss_pred             ccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHH
Confidence            3456799999999999999999999999999999999996   8865432 22333333222 1 112345678999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      ||++||++||    ++.|+++||||++++|.
T Consensus       263 ~L~~dP~~Rp----s~~eil~h~~~~~~~~p  289 (299)
T 4g31_A          263 MLSPSPMERP----EAINIIENAVFEDLDFP  289 (299)
T ss_dssp             HTCSSGGGSC----CHHHHHTSGGGCCC---
T ss_pred             HcCCChhHCc----CHHHHhcCHhhCCCCCC
Confidence            9999999999    69999999999999884

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=4.3e-60  Score=465.18  Aligned_cols=281  Identities=20%  Similarity=0.332  Sum_probs=209.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~   96 (412)
                      ++|+++++||+|+||+||+|+++.. ..+++.||||++.+...      ..++.+|+++|+.+ +|||||+++++|++++
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~~-~~~~~~vAiK~i~~~~~------~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~   93 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQLQ-VGPEEKIALKHLIPTSH------PIRIAAELQCLTVAGGQDNVMGVKYCFRKND   93 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEBT-TSCEEEEEEEEECTTSC------HHHHHHHHHHHHHTCSBTTBCCCSEEEEETT
T ss_pred             CcEEEEEEEecccCcEEEEEEEccc-CCCCCEEEEEEEccccC------HHHHHHHHHHHHHhcCCCCCceEEEEEEECC
Confidence            6799999999999999999987632 22456699999865431      23566799999999 5999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEccccccchh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDFDLSRNL  175 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DFGla~~~  175 (412)
                      ++|+|||||.||+|.+++.     .+++.+++.|+.||+.||+|||++|||||||||+|||++.+ |.+||+|||+|+..
T Consensus        94 ~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~  168 (361)
T 4f9c_A           94 HVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT  168 (361)
T ss_dssp             EEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence            9999999999999987762     39999999999999999999999999999999999999887 89999999999865


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      .............                                  ...... .................+.+||+.||
T Consensus       169 ~~~~~~~~~~~~~----------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~GT~~Y~  213 (361)
T 4f9c_A          169 HDTKIELLKFVQS----------------------------------EAQQER-CSQNKCSICLSRRQQVAPRAGTPGFR  213 (361)
T ss_dssp             TTCSCGGGGGC-------------------------------------------------------------CCCCGGGC
T ss_pred             CCccccccccccc----------------------------------cccccc-cccccccccccccccccccccCcccc
Confidence            3221100000000                                  000000 00000000112233456789999999


Q ss_pred             cceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcC------------------------------
Q 042539          256 SPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMK------------------------------  303 (412)
Q Consensus       256 APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~------------------------------  303 (412)
                      |||++.+. .|+.++||||+|||+|||++|++||.+ .+..+++..|...                              
T Consensus       214 APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~  293 (361)
T 4f9c_A          214 APEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRK  293 (361)
T ss_dssp             CHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHH
T ss_pred             CHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhH
Confidence            99999886 489999999999999999999999854 4555554443210                              


Q ss_pred             -------------------------CCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          304 -------------------------TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       304 -------------------------~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                               ...+...+++++|||.+||++||++|+    |++|+|+||||++++
T Consensus       294 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~----ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          294 LCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRI----TAEEALLHPFFKDMS  360 (361)
T ss_dssp             HHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSC----CHHHHHTSGGGTTC-
T ss_pred             HHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCc----CHHHHhcCcccCCCC
Confidence                                     011345678999999999999999999    799999999999864

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.5e-58  Score=450.85  Aligned_cols=284  Identities=36%  Similarity=0.665  Sum_probs=247.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +.+++|++++.||+|+||+||+|+++.++.    .||||++++...... .....+.+|+++++.++||||++++++|++
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~   76 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREKATGR----YYAMKILRKEVIIAK-DEVAHTVTESRVLQNTRHPFLTALKYAFQT   76 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCCTTBCCEEEEEEC
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEECCCCC----EEEEEEEeHHHhhhh-hHHHHHHHHHHHHHhCCCCcCcceEEEEEe
Confidence            678999999999999999999999987554    499999987654222 234567789999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .+.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+.
T Consensus        77 ~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~  154 (337)
T 1o6l_A           77 HDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhh
Confidence            999999999999999988876654  499999999999999999999999999999999999999999999999999974


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ..                                                               ..+....+.+||+.|
T Consensus       155 ~~---------------------------------------------------------------~~~~~~~~~~gt~~y  171 (337)
T 1o6l_A          155 GI---------------------------------------------------------------SDGATMKTFCGTPEY  171 (337)
T ss_dssp             SC---------------------------------------------------------------CTTCCBCCCEECGGG
T ss_pred             cc---------------------------------------------------------------cCCCcccccccChhh
Confidence            31                                                               112234467899999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      +|||++.+..++.++|||||||++|||++|.+||.+.+....+..+......++ ..++++.+||.+||+.||++|++..
T Consensus       172 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~  251 (337)
T 1o6l_A          172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGG  251 (337)
T ss_dssp             CCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCS
T ss_pred             CChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCC
Confidence            999999999999999999999999999999999999999888888887766554 4689999999999999999999643


Q ss_pred             -CChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCCc
Q 042539          334 -RGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREEN  368 (412)
Q Consensus       334 -~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~~  368 (412)
                       .+++++++||||++++|+.+. ....|||.|...+.
T Consensus       252 ~~~~~ei~~h~~f~~~~~~~~~~~~~~pp~~p~~~~~  288 (337)
T 1o6l_A          252 PSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSE  288 (337)
T ss_dssp             TTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSST
T ss_pred             CCCHHHHHcCCCcCCCCHHHHHhCCCCCCCCCCCCCc
Confidence             379999999999999998664 45689999886544

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3e-59  Score=458.55  Aligned_cols=288  Identities=34%  Similarity=0.645  Sum_probs=241.1

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ....+.+++|+++++||+|+||+||+|+++.++.    .||||++++..... ......+.+|+.+++.+ +||||++++
T Consensus        16 ~~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----~~AvK~~~~~~~~~-~~~~~~~~~E~~il~~~~~hp~Iv~l~   90 (353)
T 3txo_A           16 SSNRLGIDNFEFIRVLGKGSFGKVMLARVKETGD----LYAVKVLKKDVILQ-DDDVECTMTEKRILSLARNHPFLTQLF   90 (353)
T ss_dssp             -------CCEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEHHHHHH-HTTHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             CcCCCchhheEEEEEEeeCCCEEEEEEEEcCCCC----EEEEEEEEHHHhcc-hhHHHHHHHHHHHHHhccCCCceeeEE
Confidence            3456889999999999999999999999987554    49999998765432 23455677799999998 699999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      ++|++.+.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.+|++||+||
T Consensus        91 ~~~~~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DF  168 (353)
T 3txo_A           91 CCFQTPDRLFFVMEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADF  168 (353)
T ss_dssp             EEEECSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             EEEEeCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccc
Confidence            99999999999999999999988877654  4999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+...                                                               .......+++
T Consensus       169 G~a~~~~---------------------------------------------------------------~~~~~~~~~~  185 (353)
T 3txo_A          169 GMCKEGI---------------------------------------------------------------CNGVTTATFC  185 (353)
T ss_dssp             TTCBCSC---------------------------------------------------------------C---------
T ss_pred             cceeecc---------------------------------------------------------------cCCccccccC
Confidence            9997431                                                               1122345678


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCc
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~  328 (412)
                      ||+.|+|||++.+..++.++|||||||++|||++|++||.+.+..+++.++......++. .++++.+||.+||++||++
T Consensus       186 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~  265 (353)
T 3txo_A          186 GTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTM  265 (353)
T ss_dssp             CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             CCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHH
Confidence            999999999999999999999999999999999999999999999999999887766654 6899999999999999999


Q ss_pred             cCCC--CCChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          329 RLGY--LRGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       329 R~~~--~~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      |++.  ..+++++++||||++++|+.+.. ...|||.|...+.
T Consensus       266 R~~~~~~~~~~~il~hp~f~~~~w~~l~~~~~~~p~~p~~~~~  308 (353)
T 3txo_A          266 RLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSR  308 (353)
T ss_dssp             STTSGGGTCTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCST
T ss_pred             ccCCcccCCHHHHhhCCcccCCCHHHHhcCcCCCCccCCCCCc
Confidence            9974  12448999999999999997654 5689999886543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.1e-59  Score=486.45  Aligned_cols=261  Identities=30%  Similarity=0.439  Sum_probs=231.1

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++++.||+|+||+||+|+++.++..    ||||++.+...    .....+.+|+++|+.++|||||+++++|+++
T Consensus       155 il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~----~AiK~i~~~~~----~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~  226 (573)
T 3uto_A          155 VLDHYDIHEELGTGAFGVVHRVTERATGNN----FAAKFVMTPHE----SDKETVRKEIQTMSVLRHPTLVNLHDAFEDD  226 (573)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCE----EEEEEEECCSH----HHHHHHHHHHHHHHHTCCTTBCCEEEEEECS
T ss_pred             CccccEEEEEEeeccCeEEEEEEECCCCCE----EEEEEEeccch----hhHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            468999999999999999999999886554    99999976543    2345677899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC--CCEEEccccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS--GHVTLTDFDLSR  173 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~--g~vkL~DFGla~  173 (412)
                      +.+|||||||.||+|..++... .+.|++.+++.|+.||+.||+|||++||+||||||+|||++.+  |.+||+|||+|+
T Consensus       227 ~~~~iv~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~  305 (573)
T 3uto_A          227 NEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTA  305 (573)
T ss_dssp             SEEEEEEECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCE
T ss_pred             CEEEEEEeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeecccee
Confidence            9999999999999998877543 3469999999999999999999999999999999999999864  899999999998


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.                                                                ......+.+||+.
T Consensus       306 ~~~----------------------------------------------------------------~~~~~~~~~GT~~  321 (573)
T 3uto_A          306 HLD----------------------------------------------------------------PKQSVKVTTGTAE  321 (573)
T ss_dssp             ECC----------------------------------------------------------------TTSEEEEECSSGG
T ss_pred             Ecc----------------------------------------------------------------CCCceeeeEECcc
Confidence            652                                                                1222346789999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~~  328 (412)
                      |||||++.+..|+.++|||||||++|||++|++||.+.+..+++.++......+     ..++++++|||.+||++||.+
T Consensus       322 y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~  401 (573)
T 3uto_A          322 FAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNT  401 (573)
T ss_dssp             GCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGG
T ss_pred             ccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhH
Confidence            999999999999999999999999999999999999999999999998765433     457899999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCCchhh
Q 042539          329 RLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                      |+    +++|+++||||+..+|...
T Consensus       402 R~----t~~e~l~Hpw~~~~~~~~~  422 (573)
T 3uto_A          402 RM----TIHQALEHPWLTPGNAPGR  422 (573)
T ss_dssp             SC----CHHHHHHSTTTSCCCCTTT
T ss_pred             Cc----CHHHHhcCcCcCCCCCCCc
Confidence            99    6999999999999888643

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.1e-59  Score=448.52  Aligned_cols=260  Identities=20%  Similarity=0.285  Sum_probs=220.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...+..++|.+.++||+|+||+||+|++... ...++..||||+++...    ....+.+.+|+++|++++|||||++++
T Consensus         7 ~~~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----~~~~~~f~~E~~il~~l~HpnIV~l~g   82 (299)
T 4asz_A            7 VQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----DNARKDFHREAELLTNLQHEHIVKFYG   82 (299)
T ss_dssp             CCBCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC----HHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             hcccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC----hHHHHHHHHHHHHHHhCCCCCCccEEE
Confidence            4578889999999999999999999998653 22356779999997543    334567889999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhC-----------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQN-----------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR  159 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~-----------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~  159 (412)
                      ++.+++.+|||||||.||+|.+++....           ...+++.++..++.||+.||+|||+++||||||||+|||++
T Consensus        83 ~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~  162 (299)
T 4asz_A           83 VCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVG  162 (299)
T ss_dssp             EECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred             EEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEEC
Confidence            9999999999999999999999987542           34699999999999999999999999999999999999999


Q ss_pred             cCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc
Q 042539          160 QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF  239 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      .++.+||+|||+|+.......                                                           
T Consensus       163 ~~~~~Ki~DFGla~~~~~~~~-----------------------------------------------------------  183 (299)
T 4asz_A          163 ENLLVKIGDFGMSRDVYSTDY-----------------------------------------------------------  183 (299)
T ss_dssp             GGGCEEECCCSCHHHHTGGGC-----------------------------------------------------------
T ss_pred             CCCcEEECCcccceecCCCCc-----------------------------------------------------------
Confidence            999999999999986532110                                                           


Q ss_pred             CCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHH
Q 042539          240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTD  316 (412)
Q Consensus       240 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~d  316 (412)
                        .......+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.+..+++..+..+.  +....+++++.+
T Consensus       184 --~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~  261 (299)
T 4asz_A          184 --YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPQEVYE  261 (299)
T ss_dssp             --EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCCCTTCCHHHHH
T ss_pred             --eeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHH
Confidence              011234579999999999999999999999999999999998 999999999999888887654  223457899999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhh
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      ||.+||+.||++||    +++++.
T Consensus       262 li~~cl~~dP~~RP----s~~~i~  281 (299)
T 4asz_A          262 LMLGCWQREPHMRK----NIKGIH  281 (299)
T ss_dssp             HHHHHTCSSGGGSC----CHHHHH
T ss_pred             HHHHHcCCChhHCc----CHHHHH
Confidence            99999999999999    578874

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.7e-58  Score=459.49  Aligned_cols=287  Identities=34%  Similarity=0.661  Sum_probs=241.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~   90 (412)
                      ...+.+++|+++++||+|+||+||+|+++.++    +.||||++++..... ......+.+|+.++.++ +|||||++++
T Consensus        46 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~----~~~AvK~~~k~~~~~-~~~~~~~~~E~~il~~~~~hp~Iv~l~~  120 (396)
T 4dc2_A           46 SSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTD----RIYAMRVVKKELVND-DEDIDWVQTEKHVFEQASNHPFLVGLHS  120 (396)
T ss_dssp             ---CCGGGEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEEGGGTC-----CCHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             ccCCChhHcEEEEEEeeCCCeEEEEEEECCCC----CEEEEEEEEhhhccC-HHHHHHHHHHHHHHHhcCCCCCcCeeEE
Confidence            45678999999999999999999999998754    449999998765433 23445677799999888 7999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +|++.+.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||
T Consensus       121 ~~~~~~~~~lV~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG  198 (396)
T 4dc2_A          121 CFQTESRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYG  198 (396)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EEEECCEEEEEEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecc
Confidence            9999999999999999999988877654  49999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+...                                                               .......+++|
T Consensus       199 la~~~~---------------------------------------------------------------~~~~~~~~~~g  215 (396)
T 4dc2_A          199 MCKEGL---------------------------------------------------------------RPGDTTSTFCG  215 (396)
T ss_dssp             TCBCCC---------------------------------------------------------------CTTCCBCCCCB
T ss_pred             eeeecc---------------------------------------------------------------cCCCccccccC
Confidence            997431                                                               12233457799


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC---------CHHHHHHHHhcCCCCCC-CCChHHHHHHHH
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK---------NRKETFRNVLMKTPEFV-GQRTALTDLIQR  320 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~---------~~~~~~~~i~~~~~~~~-~~~~~~~dli~~  320 (412)
                      |+.|+|||++.+..++.++|||||||++|||++|++||.+.         .....+..+......++ ..+.++++||.+
T Consensus       216 t~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~  295 (396)
T 4dc2_A          216 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKS  295 (396)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSCHHHHHHHHH
T ss_pred             CcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999642         33445666666665554 468999999999


Q ss_pred             hhhhCCCccCCCC--CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          321 LLEKDPVKRLGYL--RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       321 ~L~~dP~~R~~~~--~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      ||++||.+|++..  .+++++++||||++++|+.+.. ...|||.|.....
T Consensus       296 lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~~~~~~pp~~p~~~~~  346 (396)
T 4dc2_A          296 FLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGE  346 (396)
T ss_dssp             HTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHHHTTCSCCSCCCCCCSS
T ss_pred             HhcCCHhHcCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCCCCcCCCCCc
Confidence            9999999999752  2468999999999999997754 5689999986654

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-59  Score=445.85  Aligned_cols=254  Identities=21%  Similarity=0.306  Sum_probs=207.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .+++..++|++.++||+|+||+||+|+++.       .||||+++....  .....+.+.+|+++|++++|||||+++++
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-------~vAvK~~~~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~  100 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG-------DVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGY  100 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESSS-------EEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEECC-------cEEEEEEEecCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            468899999999999999999999998643       289999975443  23456778899999999999999999998


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +. ++.+|||||||+||+|.+++.... +.+++.++..++.||+.||+|||++|||||||||+|||++.++.+||+|||+
T Consensus       101 ~~-~~~~~iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  178 (307)
T 3omv_A          101 MT-KDNLAIVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGL  178 (307)
T ss_dssp             EC-SSSCEEEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSS
T ss_pred             EE-CCeEEEEEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccC
Confidence            75 457899999999999998886543 4699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.....                                                             .......+.+||
T Consensus       179 a~~~~~~-------------------------------------------------------------~~~~~~~~~~GT  197 (307)
T 3omv_A          179 ATVKSRW-------------------------------------------------------------SGSQQVEQPTGS  197 (307)
T ss_dssp             CBC-------------------------------------------------------------------------CCCC
T ss_pred             ceecccC-------------------------------------------------------------CcceeecccccC
Confidence            9764211                                                             011223467899


Q ss_pred             CCCccceeecCC---CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---CC----CCCCChHHHHHHHHh
Q 042539          252 EEYVSPEVVRGD---GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---PE----FVGQRTALTDLIQRL  321 (412)
Q Consensus       252 ~~Y~APE~l~~~---~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---~~----~~~~~~~~~dli~~~  321 (412)
                      +.|||||++.+.   .|+.++|||||||++|||+||+.||.+.+.......++...   +.    ...+++++.+||.+|
T Consensus       198 ~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~c  277 (307)
T 3omv_A          198 VLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADC  277 (307)
T ss_dssp             TTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHH
T ss_pred             CCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHH
Confidence            999999999753   58999999999999999999999999876555544444322   21    235678999999999


Q ss_pred             hhhCCCccCCCCCChhhhhc
Q 042539          322 LEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |+.||++||    ++.++++
T Consensus       278 l~~dP~~RP----s~~ei~~  293 (307)
T 3omv_A          278 VKKVKEERP----LFPQILS  293 (307)
T ss_dssp             TCSSSTTSC----CHHHHHH
T ss_pred             cCCCHhHCc----CHHHHHH
Confidence            999999999    4666543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.5e-58  Score=448.40  Aligned_cols=261  Identities=18%  Similarity=0.278  Sum_probs=215.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...+..++|.+.++||+|+||+||+|+++.. +..+++.||||+++...    ....+.+.+|+++|++++|||||++++
T Consensus        35 ~~~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~----~~~~~~f~~E~~il~~l~HpnIV~l~g  110 (329)
T 4aoj_A           35 VHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----ESARQDFQREAELLTMLQHQHIVRFFG  110 (329)
T ss_dssp             SCBCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS----HHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             hcccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC----HHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence            3457788999999999999999999998653 33356779999997543    334567889999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhC-------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceE
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQN-------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENIL  157 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~-------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiL  157 (412)
                      ++.+++.+|||||||.||+|..++....             .+.+++.++..++.||+.||.|||+++||||||||+|||
T Consensus       111 ~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NIL  190 (329)
T 4aoj_A          111 VCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCL  190 (329)
T ss_dssp             EECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEE
Confidence            9999999999999999999999886542             245899999999999999999999999999999999999


Q ss_pred             EccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccc
Q 042539          158 IRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQ  237 (412)
Q Consensus       158 l~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.++.+||+|||+|+.+....                                                          
T Consensus       191 l~~~~~~Ki~DFGla~~~~~~~----------------------------------------------------------  212 (329)
T 4aoj_A          191 VGQGLVVKIGDFGMSRDIYSTD----------------------------------------------------------  212 (329)
T ss_dssp             EETTTEEEECCCC-------------------------------------------------------------------
T ss_pred             ECCCCcEEEcccccceeccCCC----------------------------------------------------------
Confidence            9999999999999998653211                                                          


Q ss_pred             ccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-CC-CCCCChHH
Q 042539          238 SFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-PE-FVGQRTAL  314 (412)
Q Consensus       238 ~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~~-~~~~~~~~  314 (412)
                         ........+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.+..+.+..+..+. +. ...+++++
T Consensus       213 ---~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~~p~~~~~~~  289 (329)
T 4aoj_A          213 ---YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEV  289 (329)
T ss_dssp             ----------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCCCCTTCCHHH
T ss_pred             ---cceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCcccccHHH
Confidence               1112235689999999999999999999999999999999998 999999999988888887643 22 34578999


Q ss_pred             HHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          315 TDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       315 ~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+||.+||+.||++||    ++.|+++
T Consensus       290 ~~li~~cl~~dP~~RP----s~~ei~~  312 (329)
T 4aoj_A          290 YAIMRGCWQREPQQRH----SIKDVHA  312 (329)
T ss_dssp             HHHHHHHCCSSTTTSC----CHHHHHH
T ss_pred             HHHHHHHcCcChhHCc----CHHHHHH
Confidence            9999999999999999    5788875

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=7.2e-59  Score=446.56  Aligned_cols=264  Identities=19%  Similarity=0.312  Sum_probs=221.6

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ...++..++++++++||+|+||+||+|+..... ..+++.||||+++...   .....+.+.+|+.++++++|||||+++
T Consensus        19 ~~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~---~~~~~~~f~~E~~il~~l~HpNIV~l~   95 (308)
T 4gt4_A           19 KLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA---EGPLREEFRHEAMLRARLQHPNVVCLL   95 (308)
T ss_dssp             CCCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C---CC-CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc---ChHHHHHHHHHHHHHHhCCCCCCCCcc
Confidence            355789999999999999999999999875422 2245679999996543   223456688899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPEN  155 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~N  155 (412)
                      +++.+++.+|||||||.||+|.+++..+.              ...+++.++..++.||+.||+|||+++||||||||+|
T Consensus        96 g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~N  175 (308)
T 4gt4_A           96 GVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRN  175 (308)
T ss_dssp             EEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             eEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Confidence            99999999999999999999999886542              2358999999999999999999999999999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ||++.++.+||+|||+|+......                                                        
T Consensus       176 ILl~~~~~~Ki~DFGlar~~~~~~--------------------------------------------------------  199 (308)
T 4gt4_A          176 VLVYDKLNVKISDLGLFREVYAAD--------------------------------------------------------  199 (308)
T ss_dssp             EEECGGGCEEECCSCCBCGGGGGG--------------------------------------------------------
T ss_pred             eEECCCCCEEECCcccceeccCCC--------------------------------------------------------
Confidence            999999999999999998653211                                                        


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCCh
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRT  312 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~  312 (412)
                           ......+.+||+.|||||++.+..|+.++|||||||++|||+| |..||.+.+..++...+..+.  +....+++
T Consensus       200 -----~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~  274 (308)
T 4gt4_A          200 -----YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPA  274 (308)
T ss_dssp             -----CBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCCCCCTTCCH
T ss_pred             -----ceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCcccchH
Confidence                 1122345689999999999999999999999999999999998 899999999998888887654  33446789


Q ss_pred             HHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          313 ALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       313 ~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ++.+||.+||+.||++||    ++.+++++
T Consensus       275 ~~~~li~~C~~~dP~~RP----s~~ei~~~  300 (308)
T 4gt4_A          275 WVYALMIECWNEFPSRRP----RFKDIHSR  300 (308)
T ss_dssp             HHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             HHHHHHHHHcCCChhHCc----CHHHHHHH
Confidence            999999999999999999    57777653

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=2e-58  Score=451.39  Aligned_cols=286  Identities=34%  Similarity=0.676  Sum_probs=236.0

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccce
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPK   87 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~   87 (412)
                      +.....+.+++|++++.||+|+||+||+|+++.++    +.||||++++...... .....+.+|+.++..+ +||||++
T Consensus         8 ~~~~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~----~~vaiK~~~~~~~~~~-~~~~~~~~E~~il~~~~~hp~iv~   82 (345)
T 1xjd_A            8 PSLQIKLKIEDFILHKMLGKGSFGKVFLAEFKKTN----QFFAIKALKKDVVLMD-DDVECTMVEKRVLSLAWEHPFLTH   82 (345)
T ss_dssp             --------CTTEEEEEEEEECSSSEEEEEEETTTT----EEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHHTTCTTBCC
T ss_pred             CCccCCCChHHeEEEEEEeeCCCeEEEEEEECCCC----CEEEEEEEEhHHhhhh-hhHHHHHHHHHHHHhcCCCCCCCc
Confidence            44456788999999999999999999999998754    4599999987654222 2344566799999987 8999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      ++++|++.+.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.+|++||+
T Consensus        83 l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~  160 (345)
T 1xjd_A           83 MFCTFQTKENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIA  160 (345)
T ss_dssp             EEEEEECSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEEC
T ss_pred             EEEEEEeCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEe
Confidence            9999999999999999999999988877654  49999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+|+....                                                               ......+
T Consensus       161 DFG~a~~~~~---------------------------------------------------------------~~~~~~~  177 (345)
T 1xjd_A          161 DFGMCKENML---------------------------------------------------------------GDAKTNT  177 (345)
T ss_dssp             CCTTCBCCCC---------------------------------------------------------------TTCCBCC
T ss_pred             EChhhhhccc---------------------------------------------------------------CCCcccC
Confidence            9999974310                                                               1123456


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCC
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDP  326 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP  326 (412)
                      ++||+.|+|||++.+..++.++|||||||++|||++|++||.+.+..+++..+....+.++. .++++++||.+||+.||
T Consensus       178 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dp  257 (345)
T 1xjd_A          178 FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREP  257 (345)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSG
T ss_pred             CCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhcCCH
Confidence            78999999999999999999999999999999999999999999999999998877766553 68999999999999999


Q ss_pred             CccCCCCCChh-hhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          327 VKRLGYLRGAC-EIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       327 ~~R~~~~~~~~-e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      ++|++    +. ++++||||++++|+.+.. ...|||.|...+.
T Consensus       258 ~~R~~----~~~~i~~hp~f~~~~w~~l~~~~~~~p~~p~~~~~  297 (345)
T 1xjd_A          258 EKRLG----VRGDIRQHPLFREINWEELERKEIDPPFRPKVKSP  297 (345)
T ss_dssp             GGSBT----TBSCGGGSGGGTTCCHHHHHTTCSCC---------
T ss_pred             hHcCC----ChHHHHcCccccCCCHHHHhhCCCCCCcCCCCCCc
Confidence            99995    55 999999999999987754 5688999876543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3.1e-58  Score=454.58  Aligned_cols=288  Identities=38%  Similarity=0.668  Sum_probs=241.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHH-HhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV-LSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~i-l~~l~hpnIv~l~~   90 (412)
                      ...+..++|++++.||+|+||+||+|+++.++.    .||||++++...... .....+.+|..+ ++.++||||+++++
T Consensus        32 ~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~----~~AiK~~~~~~~~~~-~~~~~~~~e~~~ll~~~~hp~Iv~l~~  106 (373)
T 2r5t_A           32 NPHAKPSDFHFLKVIGKGSFGKVLLARHKAEEV----FYAVKVLQKKAILKK-KEEKHIMSERNVLLKNVKHPFLVGLHF  106 (373)
T ss_dssp             CTTCCGGGEEEEEEEECCTTCEEEEEEETTTCC----EEEEEEEEGGGBC--------------CCBCCCCCTTBCCEEE
T ss_pred             CCCCChhheEEEEEEeeCCCeEEEEEEEcCCCC----EEEEEEEEHHHhhhh-HHHHHHHHHHHHHHHhCCCCCCCCEEE
Confidence            345778999999999999999999999987554    499999988765332 334556667777 56789999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +|++.+.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||
T Consensus       107 ~~~~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG  184 (373)
T 2r5t_A          107 SFQTADKLYFVLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFG  184 (373)
T ss_dssp             EEECSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             EEEeCCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCc
Confidence            9999999999999999999988877654  49999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++...                                                               .......+++|
T Consensus       185 ~a~~~~---------------------------------------------------------------~~~~~~~~~~g  201 (373)
T 2r5t_A          185 LCKENI---------------------------------------------------------------EHNSTTSTFCG  201 (373)
T ss_dssp             BCGGGB---------------------------------------------------------------CCCCCCCSBSC
T ss_pred             cccccc---------------------------------------------------------------cCCCccccccC
Confidence            997532                                                               11223456799


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCcc
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |+.|+|||++.+..++.++|||||||++|||++|.+||.+.+..+++.+++.....+ ...+..+++||.+||+.||.+|
T Consensus       202 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R  281 (373)
T 2r5t_A          202 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKR  281 (373)
T ss_dssp             CCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGS
T ss_pred             CccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHHcccCHHhC
Confidence            999999999999999999999999999999999999999999999999998766554 3578999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCCch
Q 042539          330 LGYLRGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREEND  369 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~~~  369 (412)
                      ++....++++++|+||++++|+.+. ....|||.|......
T Consensus       282 ~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~pp~~p~~~~~~  322 (373)
T 2r5t_A          282 LGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPN  322 (373)
T ss_dssp             TTTTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCCC--
T ss_pred             CCCCCCHHHHhCCccccCCCHHHHHhCCCCCCCCCCCCCcc
Confidence            9876678999999999999998664 457899999865543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=9.1e-58  Score=441.82  Aligned_cols=280  Identities=34%  Similarity=0.642  Sum_probs=244.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+.+++|++++.||+|+||+||+|+++.++.    .||+|++++..... ......+.+|+.+++.++||||++++++++
T Consensus         2 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~   76 (318)
T 1fot_A            2 KYSLQDFQILRTLGTGSFGRVHLIRSRHNGR----YYAMKVLKKEIVVR-LKQVEHTNDERLMLSIVTHPFIIRMWGTFQ   76 (318)
T ss_dssp             -CCGGGEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCHHHHHHHHHHHHSCCBTTBCCEEEEEE
T ss_pred             CCChHHcEEEEEEeeCCCEEEEEEEECCCCC----EEEEEEEEHHHhhh-hhHHHHHHHHHHHHhhCCCCCCceEeEEEE
Confidence            4678999999999999999999999987554    49999998765422 123456677999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +.+.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+++
T Consensus        77 ~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~  154 (318)
T 1fot_A           77 DAQQIFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAK  154 (318)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcce
Confidence            9999999999999999998887643  49999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ...                                                                  ....+.+||+.
T Consensus       155 ~~~------------------------------------------------------------------~~~~~~~gt~~  168 (318)
T 1fot_A          155 YVP------------------------------------------------------------------DVTYTLCGTPD  168 (318)
T ss_dssp             ECS------------------------------------------------------------------SCBCCCCSCTT
T ss_pred             ecC------------------------------------------------------------------CccccccCCcc
Confidence            531                                                                  11235689999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |+|||++.+..++.++|||||||++|||++|++||.+.+..+.+.+++.....++ ..++++.+||.+||..||++|++.
T Consensus       169 y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~  248 (318)
T 1fot_A          169 YIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGN  248 (318)
T ss_dssp             TCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTS
T ss_pred             ccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            9999999999999999999999999999999999999999999999887766554 467899999999999999999975


Q ss_pred             CC-ChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCC
Q 042539          333 LR-GACEIKEHVFFKGVRWDLLTD-VLRPPFIPSRE  366 (412)
Q Consensus       333 ~~-~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~  366 (412)
                      .. +++++++||||++++|+.+.. ...|||.|...
T Consensus       249 ~~~~~~~i~~hp~f~~~~~~~~~~~~~~~p~~p~~~  284 (318)
T 1fot_A          249 LQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQ  284 (318)
T ss_dssp             STTTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC-
T ss_pred             cCCCHHHHhcCccccCCCHHHHHhCCCCCCCCCCcC
Confidence            43 799999999999999986644 56789988764

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3.7e-58  Score=450.79  Aligned_cols=287  Identities=31%  Similarity=0.603  Sum_probs=246.2

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~   90 (412)
                      ...+.+++|++++.||+|+||+||+|+++.++    +.||||++++...... .....+.+|+.++..+ +||||+++++
T Consensus        14 ~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~----~~~AiK~~~~~~~~~~-~~~~~~~~E~~~l~~~~~hp~iv~l~~   88 (353)
T 2i0e_A           14 RDRMKLTDFNFLMVLGKGSFGKVMLSERKGTD----ELYAVKILKKDVVIQD-DDVECTMVEKRVLALPGKPPFLTQLHS   88 (353)
T ss_dssp             -----CTTEEEEEEEEEETTEEEEEEEETTEE----EEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTCTTCCTTBCCEEE
T ss_pred             cCCCchHHcEEEEEEeeCCCEEEEEEEECCCC----CEEEEEEEEHHHhhcc-hHHHHHHHHHHHHHhcCCCCEEeeEEE
Confidence            44678899999999999999999999998744    4599999987654322 2345667799999988 6999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +|++.+.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||
T Consensus        89 ~~~~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG  166 (353)
T 2i0e_A           89 CFQTMDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFG  166 (353)
T ss_dssp             EEECSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EEEcCCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCC
Confidence            9999999999999999999988877654  49999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+...                                                               .......+++|
T Consensus       167 ~a~~~~---------------------------------------------------------------~~~~~~~~~~g  183 (353)
T 2i0e_A          167 MCKENI---------------------------------------------------------------WDGVTTKTFCG  183 (353)
T ss_dssp             TCBCCC---------------------------------------------------------------CTTCCBCCCCS
T ss_pred             cccccc---------------------------------------------------------------cCCcccccccC
Confidence            997431                                                               11223456789


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCcc
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |+.|+|||++.+..++.++|||||||++|||++|++||.+.+..+++.+++.....++ ..++++.+||.+||..||.+|
T Consensus       184 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R  263 (353)
T 2i0e_A          184 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKR  263 (353)
T ss_dssp             CGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTSC
T ss_pred             CccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHHHc
Confidence            9999999999999999999999999999999999999999999999999988766554 468999999999999999999


Q ss_pred             CCCC-CChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCCc
Q 042539          330 LGYL-RGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREEN  368 (412)
Q Consensus       330 ~~~~-~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~~  368 (412)
                      +++. .+++++++||||++++|+.+. ....|||.|.....
T Consensus       264 ~~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~~p~~p~~~~~  304 (353)
T 2i0e_A          264 LGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKACGR  304 (353)
T ss_dssp             TTCSTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCCC
T ss_pred             CCCCCCCHHHHhcCccccCCCHHHHHhCCCCCCcCCCCCCc
Confidence            9753 358999999999999998764 45789999886543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.6e-57  Score=443.48  Aligned_cols=286  Identities=34%  Similarity=0.662  Sum_probs=242.7

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~   91 (412)
                      ..+.+++|++++.||+|+||+||+|+++.++    +.||||++++..... ......+.+|+.+++++ +||||++++++
T Consensus         4 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~----~~~aiK~~~~~~~~~-~~~~~~~~~E~~~l~~~~~hp~iv~l~~~   78 (345)
T 3a8x_A            4 DPLGLQDFDLLRVIGRGSYAKVLLVRLKKTD----RIYAMKVVKKELVND-DEDIDWVQTEKHVFEQASNHPFLVGLHSC   78 (345)
T ss_dssp             CCCCGGGEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEEGGGSCS-HHHHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred             CCCchhheEEEEEEEecCCeEEEEEEECCCC----CEEEEEEEEhHHhcc-hHHHHHHHHHHHHHHhcCCCCccCeEEEE
Confidence            4578899999999999999999999998754    459999998765433 34456777899999998 79999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      |++.+.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+
T Consensus        79 ~~~~~~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~  156 (345)
T 3a8x_A           79 FQTESRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM  156 (345)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGG
T ss_pred             EEeCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccc
Confidence            999999999999999999988877654  499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+...                                                               .......+.+||
T Consensus       157 a~~~~---------------------------------------------------------------~~~~~~~~~~gt  173 (345)
T 3a8x_A          157 CKEGL---------------------------------------------------------------RPGDTTSTFCGT  173 (345)
T ss_dssp             CBCSC---------------------------------------------------------------CTTCCBCCCCSC
T ss_pred             ccccc---------------------------------------------------------------CCCCcccccCCC
Confidence            97431                                                               111233467899


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCC---------CCHHHHHHHHhcCCCCCC-CCChHHHHHHHHh
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG---------KNRKETFRNVLMKTPEFV-GQRTALTDLIQRL  321 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~---------~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~  321 (412)
                      +.|+|||++.+..++.++|||||||++|||++|++||..         ......+..+......++ ..+.++++||.+|
T Consensus       174 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~l  253 (345)
T 3a8x_A          174 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSF  253 (345)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHH
T ss_pred             ccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999975         334455666666555544 4689999999999


Q ss_pred             hhhCCCccCCCC--CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          322 LEKDPVKRLGYL--RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       322 L~~dP~~R~~~~--~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      |+.||.+|++..  .+++++++||||++++|+.+.. ...|||.|.....
T Consensus       254 L~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~~~~~~~~~p~~p~~~~~  303 (345)
T 3a8x_A          254 LNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGE  303 (345)
T ss_dssp             TCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCTT
T ss_pred             hcCCHhHCCCCCCcCCHHHHhcCCccCCCCHHHHHhCCCCCCcCCCCCCc
Confidence            999999999742  2368999999999999987654 5678999886543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.3e-56  Score=439.35  Aligned_cols=284  Identities=33%  Similarity=0.596  Sum_probs=248.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .....+++|++++.||+|+||+||+|+++.++.    .||||++.+..... ......+.+|+++++.++||||++++++
T Consensus        35 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~  109 (350)
T 1rdq_E           35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGN----HYAMKILDKQKVVK-LKQIEHTLNEKRILQAVNFPFLVKLEFS  109 (350)
T ss_dssp             CCCCCGGGEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ccCCCHHHCEEEEEeecCcCcEEEEEEECCCCC----EEEEEEEEhHHhcc-HHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            345778999999999999999999999987554    49999997765422 2234567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+
T Consensus       110 ~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~  187 (350)
T 1rdq_E          110 FKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF  187 (350)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             EEcCCEEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEccccc
Confidence            999999999999999999988887654  499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++...                                                                  ....+.+||
T Consensus       188 a~~~~------------------------------------------------------------------~~~~~~~gt  201 (350)
T 1rdq_E          188 AKRVK------------------------------------------------------------------GRTWTLCGT  201 (350)
T ss_dssp             CEECS------------------------------------------------------------------SCBCCCEEC
T ss_pred             ceecc------------------------------------------------------------------CCcccccCC
Confidence            97541                                                                  112356899


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      +.|+|||++.+..++.++|||||||++|+|++|.+||.+.+..+.+.++......++ ..+.++.+||.+||+.||.+|+
T Consensus       202 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~  281 (350)
T 1rdq_E          202 PEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRF  281 (350)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCT
T ss_pred             ccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhcc
Confidence            999999999999999999999999999999999999999999999999887766554 4689999999999999999999


Q ss_pred             CCC-CChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCCCc
Q 042539          331 GYL-RGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSREEN  368 (412)
Q Consensus       331 ~~~-~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~~~  368 (412)
                      +.. .+++++++||||++++|+.+. ....|||.|.....
T Consensus       282 ~~~~~~~~ei~~h~~f~~~~w~~~~~~~~~~p~~p~~~~~  321 (350)
T 1rdq_E          282 GNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP  321 (350)
T ss_dssp             TSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCST
T ss_pred             CCccCCHHHHHhCcCcCCCCHHHHhhccCCCCCCCCCCCc
Confidence            642 348999999999999998664 46789999986654

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.9e-57  Score=452.97  Aligned_cols=284  Identities=35%  Similarity=0.609  Sum_probs=238.8

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|+++++||+|+||+||+|+++.++.    .||||++++..... ......+.+|+.++..++||||++++++|+
T Consensus        57 ~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~----~vAiK~l~k~~~~~-~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQ----VYAMKIMNKWDMLK-RGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHH-HGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             cCChhhEEEEEEEeeCCCeEEEEEEECCCCC----EEEEEEEeHHHhhh-HHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            4678999999999999999999999987554    49999997754322 223345677999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +.+.+|+|||||.||+|..++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+
T Consensus       132 ~~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~  210 (412)
T 2vd5_A          132 DENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCL  210 (412)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eCCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence            9999999999999999998887643 359999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                              ......+.+||+.
T Consensus       211 ~~~~~--------------------------------------------------------------~~~~~~~~~Gt~~  228 (412)
T 2vd5_A          211 KLRAD--------------------------------------------------------------GTVRSLVAVGTPD  228 (412)
T ss_dssp             ECCTT--------------------------------------------------------------SCEECSSCCSCGG
T ss_pred             eccCC--------------------------------------------------------------CccccceeccccC
Confidence            54210                                                              0112235689999


Q ss_pred             Cccceeec-------CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--CCC----CCCChHHHHHHHH
Q 042539          254 YVSPEVVR-------GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--PEF----VGQRTALTDLIQR  320 (412)
Q Consensus       254 Y~APE~l~-------~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~~~----~~~~~~~~dli~~  320 (412)
                      |+|||++.       +..|+.++|||||||++|||++|++||.+.+..+++.+++...  ..+    ...++++++||.+
T Consensus       229 Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~  308 (412)
T 2vd5_A          229 YLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQR  308 (412)
T ss_dssp             GCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHT
T ss_pred             cCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHH
Confidence            99999997       3568999999999999999999999999999998888887521  222    3578999999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCc
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN  368 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~  368 (412)
                      ||. +|.+|++. .+++++++||||++++|+.+.. ..|||.|.....
T Consensus       309 lL~-~p~~Rlgr-~~~~ei~~Hpff~~i~w~~l~~-~~~p~~p~~~~~  353 (412)
T 2vd5_A          309 LLC-PPETRLGR-GGAGDFRTHPFFFGLDWDGLRD-SVPPFTPDFEGA  353 (412)
T ss_dssp             TSS-CGGGCTTT-TTHHHHHTSGGGTTCCSTTSTT-SCCSCCCC----
T ss_pred             HcC-ChhhcCCC-CCHHHHhcCCCcCCCCHHHHhh-cCCCCCCcCCCc
Confidence            999 99999853 3799999999999999998864 578999987554

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.9e-57  Score=451.77  Aligned_cols=282  Identities=30%  Similarity=0.565  Sum_probs=240.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|+++++||+|+||+||+|+++.++.    .||+|++++...... .....+.+|+.+++.++|||||+++++|+
T Consensus        65 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~----~~AiK~~~k~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l~~~~~  139 (410)
T 3v8s_A           65 RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRK----VYAMKLLSKFEMIKR-SDSAFFWEERDIMAFANSPWVVQLFYAFQ  139 (410)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEHHHHHHT-CCCSTHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             ccCccccEEEEEEEcCCCEEEEEEEECCCCc----EEEEEEEehhhhhhh-HHHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            4677899999999999999999999987554    499999977543221 12334667999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +++.+|+|||||.||+|..++...   .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+
T Consensus       140 ~~~~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~  216 (410)
T 3v8s_A          140 DDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCM  216 (410)
T ss_dssp             CSSEEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             ECCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence            999999999999999998887643   49999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+...                                                              ......+.+||+.
T Consensus       217 ~~~~~--------------------------------------------------------------~~~~~~~~~gt~~  234 (410)
T 3v8s_A          217 KMNKE--------------------------------------------------------------GMVRCDTAVGTPD  234 (410)
T ss_dssp             ECCTT--------------------------------------------------------------SEEECCSCCSCGG
T ss_pred             eeccC--------------------------------------------------------------CcccccCCcCCcc
Confidence            54211                                                              0112346789999


Q ss_pred             CccceeecCCC----CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-----CCCCCCCChHHHHHHHHhhhh
Q 042539          254 YVSPEVVRGDG----HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEFVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       254 Y~APE~l~~~~----~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-----~~~~~~~~~~~~dli~~~L~~  324 (412)
                      |+|||++.+..    ++.++|||||||++|||++|++||.+.+..+++.+++..     .+.....++++++||.+||+.
T Consensus       235 Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~  314 (410)
T 3v8s_A          235 YISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTD  314 (410)
T ss_dssp             GCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSC
T ss_pred             ccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccC
Confidence            99999998765    789999999999999999999999999999998888753     244456889999999999998


Q ss_pred             CCCc--cCCCCCChhhhhcCCCCCCCCchhh-cccCCCCCCCCCCCch
Q 042539          325 DPVK--RLGYLRGACEIKEHVFFKGVRWDLL-TDVLRPPFIPSREEND  369 (412)
Q Consensus       325 dP~~--R~~~~~~~~e~l~h~ff~~~~~~~~-~~~~~pp~~p~~~~~~  369 (412)
                      +|.+  |+    +++|+++||||++++|+.+ .....|||+|...+..
T Consensus       315 ~~~rlgR~----~~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p~~~~~~  358 (410)
T 3v8s_A          315 REVRLGRN----GVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDI  358 (410)
T ss_dssp             GGGCTTSS----CHHHHHTSGGGCCSSCCSTTGGGSCCSCCCCCSSTT
T ss_pred             hhhhCCCC----CHHHHhcCccccCCCHHHHhhcccCCCCCCcCCCcc
Confidence            8877  77    7999999999999999744 3356899999876543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=5.6e-57  Score=454.05  Aligned_cols=283  Identities=32%  Similarity=0.575  Sum_probs=239.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|+++++||+|+||+||+|+++.++    +.||||++++...... .....+.+|+.++..++||||++++++|+
T Consensus        70 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~----~~vAvK~~~~~~~~~~-~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           70 RLHREDFEILKVIGRGAFGEVAVVKLKNAD----KVFAMKILNKWEMLKR-AETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEEHHHHHHT-TTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             cCChhheEEEEEEEeCCCEEEEEEEEcCCC----cEEEEEEEEHHHhhhH-HHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            466789999999999999999999998754    4599999977543221 22334677999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +++.+|+|||||.||+|..++... .+.+++..++.++.||+.||+|||++|||||||||+|||++.+|++||+|||+|+
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~  223 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCL  223 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhh
Confidence            999999999999999999887653 3459999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                              ........+||+.
T Consensus       224 ~~~~~--------------------------------------------------------------~~~~~~~~~GT~~  241 (437)
T 4aw2_A          224 KLMED--------------------------------------------------------------GTVQSSVAVGTPD  241 (437)
T ss_dssp             ECCTT--------------------------------------------------------------SCEECCSCCSCGG
T ss_pred             hcccC--------------------------------------------------------------CCcccccccCCcC
Confidence            54211                                                              1112235689999


Q ss_pred             Cccceeec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-----CCCC-CCCChHHHHHHHHhh
Q 042539          254 YVSPEVVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-----TPEF-VGQRTALTDLIQRLL  322 (412)
Q Consensus       254 Y~APE~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-----~~~~-~~~~~~~~dli~~~L  322 (412)
                      |+|||++.     +..|+.++|||||||++|||++|++||.+.+..+.+.+++..     .+.. ...++++++||.+||
T Consensus       242 Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL  321 (437)
T 4aw2_A          242 YISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLI  321 (437)
T ss_dssp             GCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTS
T ss_pred             eeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHh
Confidence            99999997     456899999999999999999999999999999988888642     1222 457899999999999


Q ss_pred             hhCCCc--cCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCCch
Q 042539          323 EKDPVK--RLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEND  369 (412)
Q Consensus       323 ~~dP~~--R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~~~  369 (412)
                      ..+|.+  |+    +++|+++||||++++|+.+. ...|||+|...+..
T Consensus       322 ~~~~~r~~r~----~~~eil~Hpff~~i~w~~l~-~~~~p~~P~~~~~~  365 (437)
T 4aw2_A          322 CSREHRLGQN----GIEDFKKHPFFSGIDWDNIR-NCEAPYIPEVSSPT  365 (437)
T ss_dssp             SCGGGCTTTT----TTHHHHTSGGGTTCCTTTGG-GSCCSCCCCCSSTT
T ss_pred             cccccccCCC----CHHHHhCCCccCCCCHHHHh-hCCCCCCCcCCCcc
Confidence            988777  76    69999999999999999885 46889999876544

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=3.7e-56  Score=431.88  Aligned_cols=292  Identities=35%  Similarity=0.661  Sum_probs=235.7

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ....+..++|++++.||+|+||+||+|++... ..+++.||+|++++............+.+|+.+++.++||||+++++
T Consensus        10 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~-~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~   88 (327)
T 3a62_A           10 GPEKIRPECFELLRVLGKGGYGKVFQVRKVTG-ANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIY   88 (327)
T ss_dssp             ---CCCGGGEEEEEEEEEETTEEEEEEEECSS-TTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEE
T ss_pred             CCCCCCHHHeEEEEEEEeCCCEEEEEEEEecc-CCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeE
Confidence            34568889999999999999999999998532 22556699999987654333344566778999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+++.+|+|||||.||+|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||
T Consensus        89 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg  166 (327)
T 3a62_A           89 AFQTGGKLYLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFG  166 (327)
T ss_dssp             EEECSSCEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCS
T ss_pred             EEEcCCEEEEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCC
Confidence            9999999999999999999988877654  48999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++....                                                               ........+|
T Consensus       167 ~~~~~~~---------------------------------------------------------------~~~~~~~~~g  183 (327)
T 3a62_A          167 LCKESIH---------------------------------------------------------------DGTVTHTFCG  183 (327)
T ss_dssp             CC-------------------------------------------------------------------------CTTSS
T ss_pred             ccccccc---------------------------------------------------------------CCccccccCC
Confidence            9875321                                                               1122345689


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCcc
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+.++......++ ..++++.+||.+||..||.+|
T Consensus       184 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R  263 (327)
T 3a62_A          184 TIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASR  263 (327)
T ss_dssp             CCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGS
T ss_pred             CcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhc
Confidence            9999999999999999999999999999999999999999999888888887665543 467999999999999999999


Q ss_pred             CCCC-CChhhhhcCCCCCCCCchhh-cccCCCCCCCCCCCc
Q 042539          330 LGYL-RGACEIKEHVFFKGVRWDLL-TDVLRPPFIPSREEN  368 (412)
Q Consensus       330 ~~~~-~~~~e~l~h~ff~~~~~~~~-~~~~~pp~~p~~~~~  368 (412)
                      ++.. .+++++++||||++++|+.+ .....|||.|.....
T Consensus       264 ~~~~~~~~~e~l~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  304 (327)
T 3a62_A          264 LGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSE  304 (327)
T ss_dssp             TTSSTTTHHHHHHSGGGSSCCHHHHHTTCSCCSCCCC----
T ss_pred             cCCCCCCHHHHHcCCcccCCCHHHHhhccCCCCCCCCcCCh
Confidence            9764 37999999999999999865 445678898876543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=3.6e-56  Score=441.13  Aligned_cols=284  Identities=28%  Similarity=0.581  Sum_probs=240.7

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCcccee
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKL   88 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l   88 (412)
                      ......+.+++|++++.||+|+||+||+|+++.++.    .||||++.+...... .....+.+|+++|+.++|||||++
T Consensus         6 ~~~~~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~----~~AiK~~~~~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l   80 (384)
T 4fr4_A            6 FDENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKK----MYAMKYMNKQKCVER-NEVRNVFKELQIMQGLEHPFLVNL   80 (384)
T ss_dssp             --CCCCCCGGGEEEEEEEECCTTCCEEEEEETTTCC----EEEEEEEEHHHHHHT-TCHHHHHHHHHHHHTCCCTTBCCE
T ss_pred             cCCCCCCChHHeEEEEEEeeCCCeEEEEEEECCCCC----EEEEEEEehhhcccH-HHHHHHHHHHHHHHhCCCCCCCcE
Confidence            345678899999999999999999999999987554    499999977654322 234567789999999999999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      +++|.+.+.+|+|||||.||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|
T Consensus        81 ~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~D  158 (384)
T 4fr4_A           81 WYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITD  158 (384)
T ss_dssp             EEEEECSSEEEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECC
T ss_pred             EEEEEeCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEec
Confidence            99999999999999999999998877653  4599999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+|+.+.                                                                ......+.
T Consensus       159 FG~a~~~~----------------------------------------------------------------~~~~~~~~  174 (384)
T 4fr4_A          159 FNIAAMLP----------------------------------------------------------------RETQITTM  174 (384)
T ss_dssp             CTTCEECC----------------------------------------------------------------TTCCBCCC
T ss_pred             cceeeecc----------------------------------------------------------------CCCceecc
Confidence            99997542                                                                12233467


Q ss_pred             ccCCCCccceeecC---CCCCchhhHHHHHHHHHHHhhCCCCCCC---CCHHHHHHHHhcCCCCCC-CCChHHHHHHHHh
Q 042539          249 VGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRG---KNRKETFRNVLMKTPEFV-GQRTALTDLIQRL  321 (412)
Q Consensus       249 ~gt~~Y~APE~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~---~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~  321 (412)
                      +||+.|+|||++.+   ..++.++|||||||++|+|++|+.||.+   ....+....+......++ ..++++.+||.+|
T Consensus       175 ~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~li~~l  254 (384)
T 4fr4_A          175 AGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKL  254 (384)
T ss_dssp             CSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCCcCCHHHHHHHHHH
Confidence            89999999999974   4589999999999999999999999975   344555555555544443 5689999999999


Q ss_pred             hhhCCCccCCCCCChhhhhcCCCCCCCCchhh-cccCCCCCCCCCC
Q 042539          322 LEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL-TDVLRPPFIPSRE  366 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~-~~~~~pp~~p~~~  366 (412)
                      |+.||.+|++   +++++++||||++++|+.+ .....|||+|...
T Consensus       255 L~~dP~~R~s---~~~~l~~hp~f~~~~w~~~~~~~~~p~~~p~~~  297 (384)
T 4fr4_A          255 LEPNPDQRFS---QLSDVQNFPYMNDINWDAVFQKRLIPGFIPNKG  297 (384)
T ss_dssp             SCSSGGGSCC---SHHHHHTSGGGTTCCHHHHHTTCSCCCCCCSCC
T ss_pred             hcCCHhHhcc---cHHHHHcChhhhcCCHHHHHhCCCCCCCCCCCC
Confidence            9999999996   5899999999999999855 4467899998753

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3e-57  Score=442.82  Aligned_cols=262  Identities=23%  Similarity=0.343  Sum_probs=216.9

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC-Cccceeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-PFLPKLLG   90 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h-pnIv~l~~   90 (412)
                      +++..++|+++++||+|+||+||+|++...+. .+.+.||||+++....   ....+.+.+|+++|+++.| ||||++++
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~---~~~~~~~~~E~~il~~l~hhpnIV~l~g  135 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLG  135 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---hHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence            46788999999999999999999999876543 3445699999976532   2345678889999999975 89999999


Q ss_pred             eEEe-CCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCc
Q 042539           91 SLET-DEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPEN  155 (412)
Q Consensus        91 ~~~~-~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~N  155 (412)
                      ++.+ ++.+|||||||.||+|..++....              ...+++.++..++.||+.||+|||+++||||||||+|
T Consensus       136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~N  215 (353)
T 4ase_A          136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARN  215 (353)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccc
Confidence            9865 467999999999999999987532              2348999999999999999999999999999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ||++.++.+||+|||+|+.+....                                                        
T Consensus       216 ILl~~~~~vKi~DFGlar~~~~~~--------------------------------------------------------  239 (353)
T 4ase_A          216 ILLSEKNVVKICDFGLARDIYKDP--------------------------------------------------------  239 (353)
T ss_dssp             EEECGGGCEEECCCGGGSCTTTCT--------------------------------------------------------
T ss_pred             eeeCCCCCEEECcchhhhhcccCC--------------------------------------------------------
Confidence            999999999999999998653211                                                        


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHH-HHHhcCC-CCC-CCCC
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETF-RNVLMKT-PEF-VGQR  311 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~-~~i~~~~-~~~-~~~~  311 (412)
                           ......+.+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.+..+.+ ..+..+. +.. ..++
T Consensus       240 -----~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~  314 (353)
T 4ase_A          240 -----DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT  314 (353)
T ss_dssp             -----TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCC
T ss_pred             -----CceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCC
Confidence                 1112345689999999999999999999999999999999998 99999987644444 3333322 222 3568


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +++.+||.+||+.||++||    ++.++++|
T Consensus       315 ~~~~~li~~c~~~dP~~RP----t~~eil~~  341 (353)
T 4ase_A          315 PEMYQTMLDCWHGEPSQRP----TFSELVEH  341 (353)
T ss_dssp             HHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             HHHHHHHHHHcCcChhHCc----CHHHHHHH
Confidence            9999999999999999999    68999876

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=3.4e-56  Score=471.19  Aligned_cols=285  Identities=31%  Similarity=0.613  Sum_probs=246.4

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~   91 (412)
                      ..+.+++|+++++||+|+||+||+|+++.++.    .||||++++...... .....+.+|+.++..+ +|+||++++++
T Consensus       336 ~~~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~----~vAvK~l~~~~~~~~-~~~~~~~~E~~~l~~~~~~~~i~~l~~~  410 (674)
T 3pfq_A          336 DRMKLTDFNFLMVLGKGSFGKVMLSERKGTDE----LYAVKILKKDVVIQD-DDVECTMVEKRVLALPGKPPFLTQLHSC  410 (674)
T ss_dssp             ----CTTEEEEEESSBTTTBCEEEEEESSSCC----EEEEEEEEHHHHHHT-TTTHHHHHHHHHHTCTTCCTTBCCEEEE
T ss_pred             ccccccceEEEEEEccCCCEEEEEEEECCCCc----EEEEEEEeccccccH-HHHHHHHHHHHHHHhccCCCeEEEEEEE
Confidence            35678999999999999999999999987554    499999987654322 2345667799999998 59999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      |++.+.+|||||||.||+|..++....  .+++.+++.|+.||+.||+|||++|||||||||+|||++.+|++||+|||+
T Consensus       411 ~~~~~~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGl  488 (674)
T 3pfq_A          411 FQTMDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM  488 (674)
T ss_dssp             CBCSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTT
T ss_pred             EEeCCEEEEEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecce
Confidence            999999999999999999988887654  499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+...                                                               .......+++||
T Consensus       489 a~~~~---------------------------------------------------------------~~~~~~~~~~GT  505 (674)
T 3pfq_A          489 CKENI---------------------------------------------------------------WDGVTTKTFCGT  505 (674)
T ss_dssp             CEECC---------------------------------------------------------------CTTCCBCCCCSC
T ss_pred             eeccc---------------------------------------------------------------cCCcccccccCC
Confidence            97531                                                               112234567999


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      +.|+|||++.+..|+.++|||||||++|||++|++||.+.+..+++..|+.....++ ..++++.+||.+||++||++|+
T Consensus       506 ~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~  585 (674)
T 3pfq_A          506 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRL  585 (674)
T ss_dssp             SSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHHHHHHHSCSSSTTCT
T ss_pred             CcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHccCCHHHCC
Confidence            999999999999999999999999999999999999999999999999998776665 4689999999999999999999


Q ss_pred             CCC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          331 GYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       331 ~~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      ++. .+++++++||||++++|+.+.. ...|||.|....
T Consensus       586 ~~~~~~~~ei~~h~ff~~i~w~~l~~~~~~pp~~p~~~~  624 (674)
T 3pfq_A          586 GCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKASG  624 (674)
T ss_dssp             TCSTTHHHHHHSSGGGSSCCHHHHTTTCSCCSCCCBCCG
T ss_pred             CCCCCcHHHHhcCccccCCCHHHHHhCCCCCCCCCcCCC
Confidence            752 3469999999999999997754 568999998654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=4.4e-55  Score=450.19  Aligned_cols=286  Identities=31%  Similarity=0.595  Sum_probs=245.1

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+..++|+++++||+|+||+||+|+++.++.    .||||++.+...... .....+.+|+++++.++||||++++++|
T Consensus       180 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~----~vAiK~l~k~~~~~~-~~~~~~~~E~~iL~~l~hp~Iv~l~~~~  254 (543)
T 3c4z_A          180 QPMGEDWFLDFRVLGRGGFGEVFACQMKATGK----LYACKKLNKKRLKKR-KGYQGAMVEKKILAKVHSRFIVSLAYAF  254 (543)
T ss_dssp             SCCCGGGEEEEEEEEECSSSEEEEEEETTTCC----EEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccCChhheEEEEEEeeCCCeEEEEEEECCCCc----EEEEEEEEhHHhhhh-HHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence            45778999999999999999999999987554    499999987654322 2345677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+.+|+|||||.||+|..++....  ...+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||
T Consensus       255 ~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFG  334 (543)
T 3c4z_A          255 ETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLG  334 (543)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             eeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecc
Confidence            99999999999999999988876543  3469999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.+..                                                               ......+++|
T Consensus       335 la~~~~~---------------------------------------------------------------~~~~~~~~~G  351 (543)
T 3c4z_A          335 LAVELKA---------------------------------------------------------------GQTKTKGYAG  351 (543)
T ss_dssp             TCEECCT---------------------------------------------------------------TCCCBCCCCS
T ss_pred             eeeeccC---------------------------------------------------------------CCcccccccC
Confidence            9975421                                                               1112335689


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC----CHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKD  325 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~----~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~d  325 (412)
                      |+.|+|||++.+..|+.++|||||||++|||++|++||.+.    ...+....+......++ ..++++.+||.+||++|
T Consensus       352 T~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~d  431 (543)
T 3c4z_A          352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKD  431 (543)
T ss_dssp             CTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSS
T ss_pred             CccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCcccCHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999875    45667777776655543 56899999999999999


Q ss_pred             CCccCCCCC-ChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCC
Q 042539          326 PVKRLGYLR-GACEIKEHVFFKGVRWDLLTD-VLRPPFIPSRE  366 (412)
Q Consensus       326 P~~R~~~~~-~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~  366 (412)
                      |++|+++.. +++++++||||++++|+.+.. ...|||.|...
T Consensus       432 P~~R~~~~~~~a~ei~~Hpff~~i~w~~l~~~~~~pp~~P~~~  474 (543)
T 3c4z_A          432 PEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSR  474 (543)
T ss_dssp             GGGSCCCBTTBSHHHHTSGGGTTCCHHHHHTTCSCCSCCCCSS
T ss_pred             HhHCCCCcccCHHHHHcCccccCCCHHHHHcCCCCCCCCCCcc
Confidence            999998643 589999999999999997755 56899998754

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.4e-55  Score=443.90  Aligned_cols=287  Identities=36%  Similarity=0.670  Sum_probs=237.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||+||+|+++.++.    .||||++++..... ......+.+|+.+++.++||||++++++
T Consensus       142 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~  216 (446)
T 4ejn_A          142 KHRVTMNEFEYLKLLGKGTFGKVILVKEKATGR----YYAMKILKKEVIVA-KDEVAHTLTENRVLQNSRHPFLTALKYS  216 (446)
T ss_dssp             --CCCGGGEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEHHHHC--------------CCCCCSCTTSCCEEEE
T ss_pred             ccCCChHHcEEeEEEeeCcCEEEEEEEEcCCCC----EEEEEEEEhhhhhh-hHHHHHHHHHHHHHHhCCCCeEeeEEEE
Confidence            456788999999999999999999999987554    49999997764422 2344566779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEcccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +.+.+.+|+|||||.||+|..++....  .+++..++.++.||+.||+|||+ +||+||||||+|||++.+|.+||+|||
T Consensus       217 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG  294 (446)
T 4ejn_A          217 FQTHDRLCFVMEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFG  294 (446)
T ss_dssp             EEETTEEEEEECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCC
T ss_pred             EeeCCEEEEEEeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCC
Confidence            999999999999999999988876654  49999999999999999999998 999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+....                                                               ......+.+|
T Consensus       295 ~a~~~~~---------------------------------------------------------------~~~~~~~~~g  311 (446)
T 4ejn_A          295 LCKEGIK---------------------------------------------------------------DGATMKTFCG  311 (446)
T ss_dssp             CCCTTCC--------------------------------------------------------------------CCSSS
T ss_pred             CceeccC---------------------------------------------------------------CCcccccccC
Confidence            9975321                                                               1122345789


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCcc
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......++ ..++++.+||.+||+.||.+|
T Consensus       312 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  391 (446)
T 4ejn_A          312 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQR  391 (446)
T ss_dssp             CGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             CccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHHHh
Confidence            9999999999999999999999999999999999999999999998888887666554 468999999999999999999


Q ss_pred             CCCC-CChhhhhcCCCCCCCCchhh-cccCCCCCCCCCCCc
Q 042539          330 LGYL-RGACEIKEHVFFKGVRWDLL-TDVLRPPFIPSREEN  368 (412)
Q Consensus       330 ~~~~-~~~~e~l~h~ff~~~~~~~~-~~~~~pp~~p~~~~~  368 (412)
                      ++.. .+++++++||||++++|+.+ .....|||.|...+.
T Consensus       392 ~~~~~~t~~ell~hp~f~~~~~~~~~~~~~~pp~~p~~~~~  432 (446)
T 4ejn_A          392 LGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSE  432 (446)
T ss_dssp             TTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCSST
T ss_pred             CCCCCCCHHHHHhCccccCCCHHHHhhCcCCCCccCCCCCc
Confidence            9543 37999999999999999865 446788999886554

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=3.7e-55  Score=452.34  Aligned_cols=285  Identities=35%  Similarity=0.606  Sum_probs=243.4

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+..++|+++++||+|+||+||+|+++.++.    .||||++.+...... .....+.+|+++|+.++|||||++++++
T Consensus       179 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~----~vAvK~l~k~~~~~~-~~~~~~~~E~~iL~~l~hp~Iv~l~~~~  253 (576)
T 2acx_A          179 QPVTKNTFRQYRVLGKGGFGEVCACQVRATGK----MYACKKLEKKRIKKR-KGEAMALNEKQILEKVNSRFVVSLAYAY  253 (576)
T ss_dssp             SCCCGGGEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCccccceEEEEEEeeCCCEEEEEEEECCCCC----EEEEEEEEhHhhhhh-HHHHHHHHHHHHHHHcCCCCEeeEEEEE
Confidence            34778999999999999999999999987554    499999987654322 2345677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ++++.+|+|||||.||+|..++.......+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|
T Consensus       254 ~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla  333 (576)
T 2acx_A          254 ETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLA  333 (576)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             eeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccc
Confidence            99999999999999999998887665556999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+..                                                                +....+.+||+
T Consensus       334 ~~~~~----------------------------------------------------------------~~~~~~~~GT~  349 (576)
T 2acx_A          334 VHVPE----------------------------------------------------------------GQTIKGRVGTV  349 (576)
T ss_dssp             EECCT----------------------------------------------------------------TCCEECCCSCG
T ss_pred             eeccc----------------------------------------------------------------CccccccCCCc
Confidence            75421                                                                11223458999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC----CHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~----~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|+|||++.+..++.++|||||||++|||++|++||.+.    ....+...+......+ ...++++++||.+||+.||.
T Consensus       350 ~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~~~dLI~~lL~~dP~  429 (576)
T 2acx_A          350 GYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPA  429 (576)
T ss_dssp             GGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             cccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCccCCHHHHHHHHHhccCCHH
Confidence            999999999999999999999999999999999999875    3455566665544444 34689999999999999999


Q ss_pred             ccCCCC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCC
Q 042539          328 KRLGYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSRE  366 (412)
Q Consensus       328 ~R~~~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~  366 (412)
                      +|+++. .+++|+++||||++++|+.+.. ...|||.|...
T Consensus       430 ~R~g~~~~sa~eil~HpfF~~i~w~~l~~~~~~pp~~p~~~  470 (576)
T 2acx_A          430 ERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQ  470 (576)
T ss_dssp             GSTTCSSSHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC
T ss_pred             HcCCCCCCCHHHHHhChhhccCCHHHHhcCCCCCCCCCCcc
Confidence            999753 2689999999999999997754 56899998753

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=3.2e-54  Score=418.70  Aligned_cols=263  Identities=27%  Similarity=0.450  Sum_probs=230.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .....+++|++++.||+|+||+||+|++..++.    .||||++.+....  ....+++.+|+++++.++||||++++++
T Consensus         9 ~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~----~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~l~~~   82 (328)
T 3fe3_A            9 DEQPHIGNYRLLKTIGKGNFAKVKLARHILTGR----EVAIKIIDKTQLN--PTSLQKLFREVRIMKILNHPNIVKLFEV   82 (328)
T ss_dssp             --CCEETTEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEGGGSC--HHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCccCCEEEEEEEeeCCCEEEEEEEECCCCC----EEEEEEEEhhcCC--HHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            345678999999999999999999999987554    4999999776542  3445677889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+.+.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus        83 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~  160 (328)
T 3fe3_A           83 IETEKTLYLIMEYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGF  160 (328)
T ss_dssp             EECSSEEEEEECCCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTC
T ss_pred             EEECCEEEEEEECCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccC
Confidence            999999999999999999988877654  499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++...                                                                .+......+||
T Consensus       161 a~~~~----------------------------------------------------------------~~~~~~~~~gt  176 (328)
T 3fe3_A          161 SNEFT----------------------------------------------------------------VGGKLDAFCGA  176 (328)
T ss_dssp             CGGGS----------------------------------------------------------------SSCGGGTTSSS
T ss_pred             ceecC----------------------------------------------------------------CCCccccccCC
Confidence            97542                                                                11223456899


Q ss_pred             CCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCcc
Q 042539          252 EEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       252 ~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +.|+|||++.+..+ +.++|||||||++|+|++|+.||.+.+..+....+.......+ ..++++.+||.+||+.||.+|
T Consensus       177 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R  256 (328)
T 3fe3_A          177 PPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKR  256 (328)
T ss_dssp             GGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHCCSSTTTS
T ss_pred             cceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHCCCChhHC
Confidence            99999999999887 4899999999999999999999999999998888887765554 468999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCCc
Q 042539          330 LGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      |    +++++++||||+...+
T Consensus       257 ~----t~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          257 G----TLEQIMKDRWINAGHE  273 (328)
T ss_dssp             C----CHHHHTTCTTTTTTCT
T ss_pred             c----CHHHHhcCHhhcCCCc
Confidence            9    7999999999987554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=3.3e-54  Score=424.02  Aligned_cols=265  Identities=26%  Similarity=0.416  Sum_probs=230.4

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh--HHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      -..++|++++.||+|+||+||+|+++.++.    .||+|++++......  ......+.+|+.+|+.++||||++++++|
T Consensus         9 ~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~----~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~   84 (361)
T 2yab_A            9 KVEDFYDIGEELGSGQFAIVKKCREKSTGL----EYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY   84 (361)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ChhhceEEeeEEeeCcCEEEEEEEECCCCC----EEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE
Confidence            345689999999999999999999987554    499999987654221  11245677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC----CEEEcc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG----HVTLTD  168 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g----~vkL~D  168 (412)
                      .+.+.+|+|||||.||+|..++...  +.+++.+++.++.||+.||.|||++||+||||||+|||++.++    .+||+|
T Consensus        85 ~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~D  162 (361)
T 2yab_A           85 ENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLID  162 (361)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECC
T ss_pred             EeCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEe
Confidence            9999999999999999998887543  4599999999999999999999999999999999999998887    799999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++.+..                                                                .......
T Consensus       163 FG~a~~~~~----------------------------------------------------------------~~~~~~~  178 (361)
T 2yab_A          163 FGLAHEIED----------------------------------------------------------------GVEFKNI  178 (361)
T ss_dssp             CSSCEECCT----------------------------------------------------------------TCCCCCC
T ss_pred             cCCceEcCC----------------------------------------------------------------CCccccC
Confidence            999975421                                                                1223456


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLE  323 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~  323 (412)
                      +||+.|+|||++.+..++.++|||||||++|+|++|.+||.+.+..+.+.++......+     ...++.+++||.+||.
T Consensus       179 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  258 (361)
T 2yab_A          179 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLV  258 (361)
T ss_dssp             CSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSC
T ss_pred             CCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCC
Confidence            89999999999999999999999999999999999999999999999998888766544     3578899999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                      .||.+||    +++++++||||++++|...
T Consensus       259 ~dP~~R~----t~~e~l~hp~~~~~~~~~~  284 (361)
T 2yab_A          259 KETRKRL----TIQEALRHPWITPVDTQQA  284 (361)
T ss_dssp             SSTTTSC----CHHHHHTSTTTSCSSHHHH
T ss_pred             CChhHCc----CHHHHhcCcCcCCCchhhh
Confidence            9999999    6999999999999998643

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1e-52  Score=412.37  Aligned_cols=293  Identities=41%  Similarity=0.722  Sum_probs=237.3

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ....+.+++|++++.||+|+||+||+|++.. +..+++.||||++++............+.+|+++++.+ +||||++++
T Consensus        47 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~  125 (355)
T 1vzo_A           47 HAEKVGIENFELLKVLGTGAYGKVFLVRKIS-GHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLH  125 (355)
T ss_dssp             CCCCCCGGGEEEEEEEEETTTEEEEEEEECS-STTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEE
T ss_pred             ccccccccceEEEEEeccCCCEEEEEEEEcc-cCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEE
Confidence            4456778999999999999999999999853 22356679999997654322222234455699999999 699999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.+++.+|+|||||.||+|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+||
T Consensus       126 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Df  203 (355)
T 1vzo_A          126 YAFQTETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDF  203 (355)
T ss_dssp             EEEEETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCS
T ss_pred             EEEeeCceEEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeC
Confidence            99999999999999999999998887654  4999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.+....                                                              .......+
T Consensus       204 G~a~~~~~~~--------------------------------------------------------------~~~~~~~~  221 (355)
T 1vzo_A          204 GLSKEFVADE--------------------------------------------------------------TERAYDFC  221 (355)
T ss_dssp             SEEEECCGGG--------------------------------------------------------------GGGGCGGG
T ss_pred             CCCeecccCC--------------------------------------------------------------CCcccCcc
Confidence            9997652111                                                              11123568


Q ss_pred             cCCCCccceeecCC--CCCchhhHHHHHHHHHHHhhCCCCCCCC----CHHHHHHHHhcCCCCC-CCCChHHHHHHHHhh
Q 042539          250 GTEEYVSPEVVRGD--GHEFAVDWWALGILTYEMLYGTTPFRGK----NRKETFRNVLMKTPEF-VGQRTALTDLIQRLL  322 (412)
Q Consensus       250 gt~~Y~APE~l~~~--~~~~~~DiwSlGvil~ell~g~~Pf~~~----~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L  322 (412)
                      ||+.|+|||++.+.  .++.++|||||||++|+|++|+.||...    ........+....+.+ ...+..+.+||.+||
T Consensus       222 gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  301 (355)
T 1vzo_A          222 GTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLL  301 (355)
T ss_dssp             SCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             cCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCcccCHHHHHHHHHHh
Confidence            99999999999863  4689999999999999999999999753    3445555555544443 456789999999999


Q ss_pred             hhCCCccCCCC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          323 EKDPVKRLGYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       323 ~~dP~~R~~~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      ..||.+||++. .+++++++|+||++++|+.+.. ...+||.|...+.
T Consensus       302 ~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l~~~~~~~p~~p~~~~~  349 (355)
T 1vzo_A          302 MKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDE  349 (355)
T ss_dssp             CSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC-
T ss_pred             hhCHHHhcCCCCCCHHHHHcCcchhcCChhHhhhccCCCCCCCccccc
Confidence            99999999653 3799999999999999986655 4567888876543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.7e-52  Score=404.53  Aligned_cols=264  Identities=26%  Similarity=0.423  Sum_probs=227.3

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh--HHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ...++|++++.||+|+||+||+|+++.++.    .||+|++++......  ......+.+|+.+++.++||||+++++++
T Consensus         8 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   83 (326)
T 2y0a_A            8 NVDDYYDTGEELGSGQFAVVKKCREKSTGL----QYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVY   83 (326)
T ss_dssp             CHHHHEEEEEEEECCSSEEEEEEEETTTCC----EEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CcccceEeceEEeeCCCeEEEEEEECCCCc----EEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            345789999999999999999999987554    499999977543211  11245677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC----CEEEcc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG----HVTLTD  168 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g----~vkL~D  168 (412)
                      .+...+|+|||||.||+|.+++...  ..+++.+++.++.||+.||.|||++||+||||||+|||++.++    .+||+|
T Consensus        84 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~D  161 (326)
T 2y0a_A           84 ENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIID  161 (326)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECC
T ss_pred             EeCCEEEEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEE
Confidence            9999999999999999998887543  4599999999999999999999999999999999999999888    799999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++....                                                                .......
T Consensus       162 fg~a~~~~~----------------------------------------------------------------~~~~~~~  177 (326)
T 2y0a_A          162 FGLAHKIDF----------------------------------------------------------------GNEFKNI  177 (326)
T ss_dssp             CTTCEECCT----------------------------------------------------------------TSCCCCC
T ss_pred             CCCCeECCC----------------------------------------------------------------CCccccc
Confidence            999975421                                                                1122345


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLE  323 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~  323 (412)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+.+..+......+     ...+..+.+||.+||+
T Consensus       178 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  257 (326)
T 2y0a_A          178 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLV  257 (326)
T ss_dssp             CSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSC
T ss_pred             cCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHcc
Confidence            79999999999999999999999999999999999999999999888888777654443     3568899999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCCchh
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                      .||.+||    +++++++||||++.+|..
T Consensus       258 ~dP~~Rp----t~~e~l~hp~~~~~~~~~  282 (326)
T 2y0a_A          258 KDPKKRM----TIQDSLQHPWIKPKDTQQ  282 (326)
T ss_dssp             SSGGGSC----CHHHHHHSTTTSCCSHHH
T ss_pred             CChhhCC----CHHHHhcCCCccCCcchh
Confidence            9999999    699999999999988753

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.5e-53  Score=406.82  Aligned_cols=248  Identities=21%  Similarity=0.237  Sum_probs=190.4

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|.+.++||+|+||+||+|+++      ++.||||+++....     ......+|+..+.+++|||||++++++.+++
T Consensus         2 ar~i~L~~~iG~G~fG~Vy~~~~~------g~~VAvK~l~~~~~-----~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~   70 (303)
T 3hmm_A            2 ARTIVLQESIGKGRFGEVWRGKWR------GEEVAVKIFSSREE-----RSWFREAEIYQTVMLRHENILGFIAADNKDN   70 (303)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEET------TEEEEEEEECGGGH-----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEEC------CEEEEEEEECccch-----hhHHHHHHHHHHhcCCCCCCCcEEEEEEecC
Confidence            367999999999999999999874      24599999965432     1122334777778899999999999998654


Q ss_pred             ----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc--------CceeeeCCCCceEEccCCCE
Q 042539           97 ----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM--------GIAYRDLKPENILIRQSGHV  164 (412)
Q Consensus        97 ----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~--------~iiHrDlKp~NiLl~~~g~v  164 (412)
                          .+|||||||+||+|..++...   .++++.+..++.|++.||+|||++        +||||||||+|||++.+|.+
T Consensus        71 ~~~~~~~lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~  147 (303)
T 3hmm_A           71 GTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC  147 (303)
T ss_dssp             SSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCE
T ss_pred             CCceEEEEEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCE
Confidence                689999999999999988653   389999999999999999999987        99999999999999999999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+|||+|+.......                                                           .....
T Consensus       148 Ki~DFGla~~~~~~~~-----------------------------------------------------------~~~~~  168 (303)
T 3hmm_A          148 CIADLGLAVRHDSATD-----------------------------------------------------------TIDIA  168 (303)
T ss_dssp             EECCCTTCEEEETTTT-----------------------------------------------------------EESCC
T ss_pred             EEEeCCCCccccCCCC-----------------------------------------------------------ceeee
Confidence            9999999986532110                                                           01112


Q ss_pred             CcccccCCCCccceeecCC------CCCchhhHHHHHHHHHHHhhCCCCCCCC---------------CHHHHHHHHhcC
Q 042539          245 SNSFVGTEEYVSPEVVRGD------GHEFAVDWWALGILTYEMLYGTTPFRGK---------------NRKETFRNVLMK  303 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~~~------~~~~~~DiwSlGvil~ell~g~~Pf~~~---------------~~~~~~~~i~~~  303 (412)
                      ..+.+||+.|||||++.+.      .++.++|||||||++|||+||.+||...               ...+....+...
T Consensus       169 ~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  248 (303)
T 3hmm_A          169 PNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ  248 (303)
T ss_dssp             -----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS
T ss_pred             cccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcc
Confidence            3356899999999999765      3578999999999999999998766421               223333333332


Q ss_pred             C--CCCCC------CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          304 T--PEFVG------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       304 ~--~~~~~------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .  +..+.      ..+.+.+||.+||+.||++||    |+.|+++
T Consensus       249 ~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RP----t~~ei~~  290 (303)
T 3hmm_A          249 KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARL----TALRIKK  290 (303)
T ss_dssp             CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSC----CHHHHHH
T ss_pred             cCCCCCCccccchHHHHHHHHHHHHHcccCHhHCc----CHHHHHH
Confidence            2  22222      124688999999999999999    6788775

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.1e-52  Score=413.41  Aligned_cols=283  Identities=27%  Similarity=0.390  Sum_probs=211.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~   93 (412)
                      ...++|++++.||+|+||+||+|.++.++.    .||||++.+...  .....+++.+|+.+++.+. ||||+++++++.
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vaiK~i~~~~~--~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~   79 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGE----VVAVKKIFDAFQ--NSTDAQRTFREIMILTELSGHENIVNLLNVLR   79 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCC----EEEEEEECC--C--CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCC----EEEEEEeccccc--ChHHHHHHHHHHHHHHhccCCCCCCeeeeEEe
Confidence            346899999999999999999999987554    499999965432  2344567778999999997 999999999998


Q ss_pred             eCC--eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           94 TDE--FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        94 ~~~--~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      ..+  .+|+|||||. ++|..++...   .+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus        80 ~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~  155 (388)
T 3oz6_A           80 ADNDRDVYLVFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGL  155 (388)
T ss_dssp             CTTSSCEEEEEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             cCCCCEEEEEecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcc
Confidence            654  7999999997 5787776542   499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.+.......               .                     +..      ....................+||
T Consensus       156 a~~~~~~~~~~---------------~---------------------~~~------~~~~~~~~~~~~~~~~~~~~~gt  193 (388)
T 3oz6_A          156 SRSFVNIRRVT---------------N---------------------NIP------LSINENTENFDDDQPILTDYVAT  193 (388)
T ss_dssp             CEESSSCCCCC---------------C---------------------CGG------GCCC---------------CCCG
T ss_pred             ccccccccccc---------------c---------------------ccc------ccccccccccccccccccCCccc
Confidence            98653211000               0                     000      00000000000112334567899


Q ss_pred             CCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC-----------------------
Q 042539          252 EEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP-----------------------  305 (412)
Q Consensus       252 ~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~-----------------------  305 (412)
                      +.|+|||++.+ ..++.++|||||||++|||++|++||.+.+..+.+..++..  .+                       
T Consensus       194 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  273 (388)
T 3oz6_A          194 RWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEK  273 (388)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHH
T ss_pred             CCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCccc
Confidence            99999999987 56899999999999999999999999999988877766521  11                       


Q ss_pred             -----------------------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          306 -----------------------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       306 -----------------------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                                             .....++++.+||.+||+.||.+|+    +++|+++||||+.......
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~----t~~e~l~Hp~~~~~~~~~~  340 (388)
T 3oz6_A          274 VEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRI----SANDALKHPFVSIFHNPNE  340 (388)
T ss_dssp             CC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSC----CHHHHTTSTTTTTTCCGGG
T ss_pred             ccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCC----CHHHHhCCHHHHHhcCCcc
Confidence                                   0115678999999999999999999    7999999999987665433

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.9e-53  Score=411.14  Aligned_cols=259  Identities=29%  Similarity=0.450  Sum_probs=218.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ...+++|++++.||+|+||+||+|++..++.    .||||++.+..... ......+.+|+.+++.++||||+++++++.
T Consensus         5 ~~~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~----~vaiK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~   79 (336)
T 3h4j_B            5 KRHIGPYIIRETLGEGSFGKVKLATHYKTQQ----KVALKFISRQLLKK-SDMHMRVEREISYLKLLRHPHIIKLYDVIT   79 (336)
T ss_dssp             CSEETTEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCSHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCC----EEEEEEEehHHccc-hhHHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            4567899999999999999999999977554    49999997654322 223456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +.+.+|+||||+ +|+|..++....  .+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++
T Consensus        80 ~~~~~~lv~E~~-~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~  156 (336)
T 3h4j_B           80 TPTDIVMVIEYA-GGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSN  156 (336)
T ss_dssp             CSSEEEEEECCC-CEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTB
T ss_pred             eCCEEEEEEECC-CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccce
Confidence            999999999999 778877766554  49999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ...                                                                .+....+.+||+.
T Consensus       157 ~~~----------------------------------------------------------------~~~~~~~~~gt~~  172 (336)
T 3h4j_B          157 IMT----------------------------------------------------------------DGNFLKTSCGSPN  172 (336)
T ss_dssp             TTT----------------------------------------------------------------TSBTTCCCTTSTT
T ss_pred             ecc----------------------------------------------------------------CCcccccccCCcC
Confidence            542                                                                1122345689999


Q ss_pred             CccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCC
Q 042539          254 YVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       254 Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |+|||++.+..+ +.++|||||||++|+|++|+.||.+......+..+.......+ ..++++.+||.+||+.||.+|| 
T Consensus       173 y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rp-  251 (336)
T 3h4j_B          173 YAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRI-  251 (336)
T ss_dssp             TSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSC-
T ss_pred             cCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCcccCCHHHHHHHHHHcCCChhHCc-
Confidence            999999998876 7899999999999999999999988665444443333333333 3678999999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCC
Q 042539          332 YLRGACEIKEHVFFKGV  348 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~  348 (412)
                         +++|+++||||+..
T Consensus       252 ---t~~eil~hp~~~~~  265 (336)
T 3h4j_B          252 ---TIQEIRRDPWFNVN  265 (336)
T ss_dssp             ---CHHHHTTCHHHHTT
T ss_pred             ---CHHHHHhChhhccC
Confidence               79999999999853

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=4.2e-52  Score=397.92  Aligned_cols=255  Identities=27%  Similarity=0.396  Sum_probs=219.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|++..++.    .||||++.......    ...+.+|+.+++.++||||+++++++.++
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~~----~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   89 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQ----EVAIRQMNLQQQPK----KELIINEILVMRENKNPNIVNYLDSYLVG   89 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCC----EEEEEEEEGGGCSC----HHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCc----EEEEEEeecccccH----HHHHHHHHHHHhcCCCCCCCeEeEEEEEC
Confidence            45789999999999999999999877554    49999997654322    34567799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+|||||.||+|..++...   .+++.+++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||+++..
T Consensus        90 ~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~  166 (297)
T 3fxz_A           90 DELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (297)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CEEEEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceec
Confidence            9999999999999999887653   3999999999999999999999999999999999999999999999999998754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ..                                                               ........+||+.|+
T Consensus       167 ~~---------------------------------------------------------------~~~~~~~~~gt~~y~  183 (297)
T 3fxz_A          167 TP---------------------------------------------------------------EQSKRSTMVGTPYWM  183 (297)
T ss_dssp             CS---------------------------------------------------------------TTCCBCCCCSCGGGC
T ss_pred             CC---------------------------------------------------------------cccccCCccCCcCcc
Confidence            21                                                               111233568999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CC---CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PE---FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~---~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |||++.+..++.++|||||||++|+|++|..||.+.+.......+.... +.   ....++.+.+||.+||+.||++|| 
T Consensus       184 aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-  262 (297)
T 3fxz_A          184 APEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG-  262 (297)
T ss_dssp             CHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSC-
T ss_pred             ChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCc-
Confidence            9999999999999999999999999999999999988777666555332 22   234678999999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCC
Q 042539          332 YLRGACEIKEHVFFKGV  348 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~  348 (412)
                         +++++++||||+..
T Consensus       263 ---s~~ell~h~~~~~~  276 (297)
T 3fxz_A          263 ---SAKELLQHQFLKIA  276 (297)
T ss_dssp             ---CHHHHTTCGGGGGC
T ss_pred             ---CHHHHhhChhhccc
Confidence               69999999999854

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=4.8e-52  Score=419.18  Aligned_cols=257  Identities=27%  Similarity=0.439  Sum_probs=222.7

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|.++.++.    .||+|++.+....  ....+.+.+|+.+++.++|||||++++++.++
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~----~~a~K~i~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~   82 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQ----EYAAMIINTKKLS--ARDHQKLEREARICRLLKHPNIVRLHDSISEE   82 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTE----EEEEEEEESCSCH--HHHHHHHHHHHHHHHHCCBTTBCCEEEEEECS
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCc----EEEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCcCCCeEEEEEEEC
Confidence            45789999999999999999999887554    4999999876543  23456678899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc---cCCCEEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~---~~g~vkL~DFGla  172 (412)
                      +.+|+|||||.||+|...+....  .+++.++..++.||+.||.|||++||+||||||+|||++   .++.+||+|||+|
T Consensus        83 ~~~~lv~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a  160 (444)
T 3soa_A           83 GHHYLIFDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLA  160 (444)
T ss_dssp             SEEEEEECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCcee
Confidence            99999999999999988776654  499999999999999999999999999999999999998   4578999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....                                                               ........+||+
T Consensus       161 ~~~~~---------------------------------------------------------------~~~~~~~~~gt~  177 (444)
T 3soa_A          161 IEVEG---------------------------------------------------------------EQQAWFGFAGTP  177 (444)
T ss_dssp             BCCCT---------------------------------------------------------------TCCBCCCSCSCG
T ss_pred             EEecC---------------------------------------------------------------CCceeecccCCc
Confidence            75421                                                               111223568999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|+|||++.+..++.++|||||||++|+|++|.+||.+.+..+.+..+......+     ...++++.+||.+||+.||.
T Consensus       178 ~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  257 (444)
T 3soa_A          178 GYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPS  257 (444)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTT
T ss_pred             ccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChh
Confidence            9999999999999999999999999999999999999999999888887665433     45789999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCC
Q 042539          328 KRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +||    ++.++++||||+.
T Consensus       258 ~Rp----ta~e~L~hp~~~~  273 (444)
T 3soa_A          258 KRI----TAAEALKHPWISH  273 (444)
T ss_dssp             TSC----CHHHHHHSCTTHH
T ss_pred             HCC----CHHHHhcCccccC
Confidence            999    7999999999964

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2.1e-52  Score=402.51  Aligned_cols=267  Identities=25%  Similarity=0.383  Sum_probs=215.4

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCcccee
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKL   88 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l   88 (412)
                      .....+--.++|++++.||+|+||+||+|++..     ++.||+|++.....  .......+.+|+++++.++||||+++
T Consensus        12 ~~~~~q~l~~~y~~~~~lG~G~~g~V~~~~~~~-----~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~   84 (311)
T 3niz_A           12 ENLYFQGLMEKYQKLEKVGEGTYGVVYKAKDSQ-----GRIVALKRIRLDAE--DEGIPSTAIREISLLKELHHPNIVSL   84 (311)
T ss_dssp             ---CEECSSCEEEEEEEEEECSSCEEEEEEETT-----SCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cceeecchHhhhHhhhhccCCCCeEEEEEEECC-----CCEEEEEEEecccc--cchhhHHHHHHHHHHHHcCCCCEeee
Confidence            344566778999999999999999999999853     34599999976532  22345667789999999999999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      ++++.+++.+|+|||||.| +|..++... ...+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~D  162 (311)
T 3niz_A           85 IDVIHSERCLTLVFEFMEK-DLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLAD  162 (311)
T ss_dssp             EEEECCSSCEEEEEECCSE-EHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECC
T ss_pred             eeEEccCCEEEEEEcCCCC-CHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEcc
Confidence            9999999999999999986 665555443 34599999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++.....                                                               .......
T Consensus       163 fg~a~~~~~~---------------------------------------------------------------~~~~~~~  179 (311)
T 3niz_A          163 FGLARAFGIP---------------------------------------------------------------VRSYTHE  179 (311)
T ss_dssp             CTTCEETTSC---------------------------------------------------------------CC---CC
T ss_pred             CcCceecCCC---------------------------------------------------------------cccccCC
Confidence            9999754210                                                               1112244


Q ss_pred             ccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc---CCC-------------------
Q 042539          249 VGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM---KTP-------------------  305 (412)
Q Consensus       249 ~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~---~~~-------------------  305 (412)
                      +||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+....+..   ...                   
T Consensus       180 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3niz_A          180 VVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQ  259 (311)
T ss_dssp             CCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCC
T ss_pred             cccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccc
Confidence            78999999999987 4579999999999999999999999998776665555432   110                   


Q ss_pred             ---------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 ---------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 ---------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                               ..+..++++.+||.+||+.||.+||    +++|+++||||++++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~f~~~~~~  310 (311)
T 3niz_A          260 VFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRI----SARDAMNHPYFKDLDPQ  310 (311)
T ss_dssp             CCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSC----CHHHHHTSGGGTTSCTT
T ss_pred             cccCCcHHHhCcccCHHHHHHHHHHcCCChhHCC----CHHHHhcCcccccCCcc
Confidence                     0123567899999999999999999    79999999999998764

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=3.7e-52  Score=409.54  Aligned_cols=255  Identities=27%  Similarity=0.435  Sum_probs=222.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||+||+|.++.++.    .||+|++.+....  ....+.+.+|+.+++.++||||+++++++.+++
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~~avK~~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~  101 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGL----EFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEES  101 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEETTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCC----EEEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC
Confidence            4689999999999999999999887554    4999999776542  234566788999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC---CEEEccccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---HVTLTDFDLSR  173 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g---~vkL~DFGla~  173 (412)
                      .+|+|||||.||+|..++...  ..+++.++..++.||+.||.|||++||+||||||+|||++.++   .+||+|||+++
T Consensus       102 ~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~  179 (362)
T 2bdw_A          102 FHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI  179 (362)
T ss_dssp             EEEEEECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCB
T ss_pred             EEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcce
Confidence            999999999999998776543  4599999999999999999999999999999999999998654   59999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ...                                                                ........+||+.
T Consensus       180 ~~~----------------------------------------------------------------~~~~~~~~~gt~~  195 (362)
T 2bdw_A          180 EVN----------------------------------------------------------------DSEAWHGFAGTPG  195 (362)
T ss_dssp             CCT----------------------------------------------------------------TCCSCCCSCSCTT
T ss_pred             Eec----------------------------------------------------------------CCcccccCCCCcc
Confidence            542                                                                1112235689999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~~  328 (412)
                      |+|||++.+..++.++|||||||++|+|++|.+||.+.+..+.+..+......+     ...++++.+||.+||+.||.+
T Consensus       196 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  275 (362)
T 2bdw_A          196 YLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKK  275 (362)
T ss_dssp             TCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGG
T ss_pred             ccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhh
Confidence            999999999999999999999999999999999999999888888887665443     346889999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||    ++.++++||||..
T Consensus       276 R~----t~~e~l~hp~~~~  290 (362)
T 2bdw_A          276 RI----TADQALKVPWICN  290 (362)
T ss_dssp             SC----CHHHHTTSHHHHT
T ss_pred             Cc----CHHHHhcCcccCC
Confidence            99    6999999999974

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=4.5e-52  Score=395.93  Aligned_cols=257  Identities=26%  Similarity=0.417  Sum_probs=212.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++++.||+|+||+||+|+++.++.    .||+|++.....  .......+.+|+.++++++||||+++++++.+++
T Consensus         1 l~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   74 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYGTVFKAKNRETHE----IVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLHDVLHSDK   74 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCC----EEEEEEEESSCS--STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT
T ss_pred             CCCceeeeEecCCCCeEEEEEEECCCCc----eEEEEeeeccCC--cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCC
Confidence            5799999999999999999999987554    499999976543  2234456778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+|||||.|+.+. .+.. ..+.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++...
T Consensus        75 ~~~lv~e~~~~~l~~-~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~  152 (292)
T 3o0g_A           75 KLTLVFEFCDQDLKK-YFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFG  152 (292)
T ss_dssp             EEEEEEECCSEEHHH-HHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEecCCCCHHH-HHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecC
Confidence            999999999875444 3333 23469999999999999999999999999999999999999999999999999997542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                               ........+||+.|+|
T Consensus       153 ~---------------------------------------------------------------~~~~~~~~~~t~~y~a  169 (292)
T 3o0g_A          153 I---------------------------------------------------------------PVRCYSAEVVTLWYRP  169 (292)
T ss_dssp             S---------------------------------------------------------------CCSCCCSCCSCGGGCC
T ss_pred             C---------------------------------------------------------------ccccccCCccccCCcC
Confidence            1                                                               1112234578999999


Q ss_pred             ceeecCCC-CCchhhHHHHHHHHHHHhhCCCC-CCCCCHHHHHHHHhcC--CC---------------------------
Q 042539          257 PEVVRGDG-HEFAVDWWALGILTYEMLYGTTP-FRGKNRKETFRNVLMK--TP---------------------------  305 (412)
Q Consensus       257 PE~l~~~~-~~~~~DiwSlGvil~ell~g~~P-f~~~~~~~~~~~i~~~--~~---------------------------  305 (412)
                      ||++.+.. ++.++|||||||++|+|++|..| |.+.+..+.+..+...  .+                           
T Consensus       170 PE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
T 3o0g_A          170 PDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLV  249 (292)
T ss_dssp             HHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCT
T ss_pred             hHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchh
Confidence            99998766 79999999999999999987666 6777777766665431  00                           


Q ss_pred             -CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          306 -EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       306 -~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                       ..+..++++++||.+||+.||++||    +++|+++||||+++
T Consensus       250 ~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          250 NVVPKLNATGRDLLQNLLKCNPVQRI----SAEEALQHPYFSDF  289 (292)
T ss_dssp             TTSTTCCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGTTC
T ss_pred             hcccccChHHHHHHHHHhccChhhCC----CHHHHhcCcccccC
Confidence             0124568899999999999999999    79999999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=5.5e-52  Score=411.65  Aligned_cols=275  Identities=20%  Similarity=0.279  Sum_probs=223.4

Q ss_pred             CCCCCccCceeeeeeecc--CceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           12 TPSLDLDNLKALKILGKG--AMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G--~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ......++|++++.||+|  +||+||+|+++.++.    .||||++++...  .......+.+|+.+++.++|||||+++
T Consensus        19 ~~~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~----~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~   92 (389)
T 3gni_B           19 SFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGE----YVTVRRINLEAC--SNEMVTFLQGELHVSKLFNHPNIVPYR   92 (389)
T ss_dssp             CCCCCGGGEEEEEEEEEETTTTEEEEEEEETTTCC----EEEEEEEEGGGS--CHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccCCCCcEEEEecccCCcCCceEEEEEEEcCCCC----EEEEEEeccccc--ChHHHHHHHHHHHHHHhCCCCCCCcEe
Confidence            445678899999999999  999999999987554    499999977653  234567788899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.+++.+|+|||||.||+|..++.......+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+||
T Consensus        93 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~df  172 (389)
T 3gni_B           93 ATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGL  172 (389)
T ss_dssp             EEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCG
T ss_pred             EEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEccc
Confidence            99999999999999999999999888765566999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |++.........                                                        ...........+
T Consensus       173 g~~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~~  196 (389)
T 3gni_B          173 RSNLSMISHGQR--------------------------------------------------------QRVVHDFPKYSV  196 (389)
T ss_dssp             GGCEECEETTEE--------------------------------------------------------CSCBCCCCTTCT
T ss_pred             ccceeecccccc--------------------------------------------------------cccccccccccc
Confidence            998754321100                                                        000111223457


Q ss_pred             cCCCCccceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------------------
Q 042539          250 GTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----------------------  304 (412)
Q Consensus       250 gt~~Y~APE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----------------------  304 (412)
                      ||+.|+|||++.+  ..++.++|||||||++|+|++|+.||.+.+.......++...                       
T Consensus       197 gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (389)
T 3gni_B          197 KVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSV  276 (389)
T ss_dssp             TTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC---------------------------
T ss_pred             ccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccccccccccccccc
Confidence            9999999999988  578999999999999999999999998865544433322111                       


Q ss_pred             ------------------------CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchh
Q 042539          305 ------------------------PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       305 ------------------------~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                                              +.....++++.+||.+||+.||++||    +++|+++||||+++.|..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----ta~ell~hp~f~~~~~~~  344 (389)
T 3gni_B          277 ANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARP----SASTLLNHSFFKQIKRRA  344 (389)
T ss_dssp             -----------------------------CCHHHHHHHHHHTCSCTTTSC----CHHHHTTSGGGGGC---C
T ss_pred             cccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCC----CHHHHhcCHHHHHHhhcc
Confidence                                    01223568899999999999999999    699999999999888753

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-52  Score=404.14  Aligned_cols=254  Identities=25%  Similarity=0.375  Sum_probs=222.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||+||+|.++.++    +.||+|++....     .....+.+|+.+++.++||||+++++++.+.+
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~----~~~a~K~~~~~~-----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~   74 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSK----KTYMAKFVKVKG-----TDQVLVKKEISILNIARHRNILHLHESFESME   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECCCT-----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCC----cEEEEEEEecCc-----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC
Confidence            579999999999999999999988754    449999996542     22345678999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc--CCCEEEccccccch
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ--SGHVTLTDFDLSRN  174 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~--~g~vkL~DFGla~~  174 (412)
                      .+|+|||||.||+|..++... ...+++.++..++.||+.||.|||++||+||||||+|||++.  ++.+||+|||+++.
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~  153 (321)
T 1tki_A           75 ELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred             EEEEEEEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeE
Confidence            999999999999998877543 245999999999999999999999999999999999999997  78999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +..                                                                +......+||+.|
T Consensus       154 ~~~----------------------------------------------------------------~~~~~~~~gt~~y  169 (321)
T 1tki_A          154 LKP----------------------------------------------------------------GDNFRLLFTAPEY  169 (321)
T ss_dssp             CCT----------------------------------------------------------------TCEEEEEESCGGG
T ss_pred             CCC----------------------------------------------------------------CCccccccCChhh
Confidence            421                                                                1122345799999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCCcc
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +|||++.+..++.++|||||||++|+|++|..||.+.+..+.+.++......+     ...+.++.+||.+||..||.+|
T Consensus       170 ~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R  249 (321)
T 1tki_A          170 YAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSR  249 (321)
T ss_dssp             SCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGS
T ss_pred             cCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHC
Confidence            99999999888999999999999999999999999999999888888766544     3678999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~  348 (412)
                      |    ++.|+++||||+..
T Consensus       250 p----t~~e~l~hp~~~~~  264 (321)
T 1tki_A          250 M----TASEALQHPWLKQK  264 (321)
T ss_dssp             C----CHHHHHHSHHHHSC
T ss_pred             c----CHHHHhcChhhccC
Confidence            9    79999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=9.5e-52  Score=418.79  Aligned_cols=292  Identities=23%  Similarity=0.339  Sum_probs=203.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .++|++++.||+|+||+||+|+++.++.    .||||++.+...  .....+++.+|+.+|+.++|||||++++++... 
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vaiK~i~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  125 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKR----VVAIKKILRVFE--DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKD  125 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--C----EEEEEEECSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCc----EEEEEEechhhc--CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCC
Confidence            4789999999999999999999987554    499999966432  234466788899999999999999999999543 


Q ss_pred             ----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           96 ----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        96 ----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                          ..+|+||||+ +++|..++...  ..+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+
T Consensus       126 ~~~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGl  202 (458)
T 3rp9_A          126 VEKFDELYVVLEIA-DSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGL  202 (458)
T ss_dssp             TTTCCCEEEEECCC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             cccCceEEEEEecc-ccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeeccccc
Confidence                5799999998 56887776543  4599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+..........      ..+..+....                     .         ..................+||
T Consensus       203 a~~~~~~~~~~~------~~~~~~~~~~---------------------~---------~~~~~~~~~~~~~~~~~~~gt  246 (458)
T 3rp9_A          203 ARTVDYPENGNS------QLPISPREDD---------------------M---------NLVTFPHTKNLKRQLTGHVVT  246 (458)
T ss_dssp             CBCTTSCTTCCC------CCC---------------------------------------------------------CC
T ss_pred             chhccCcccccc------ccccCccccc---------------------c---------ccccccccccccccccCCccc
Confidence            987632211000      0000000000                     0         000000000111234567899


Q ss_pred             CCCccceee-cCCCCCchhhHHHHHHHHHHHhh-----------CCCCCCCCCH--------------------HHHHHH
Q 042539          252 EEYVSPEVV-RGDGHEFAVDWWALGILTYEMLY-----------GTTPFRGKNR--------------------KETFRN  299 (412)
Q Consensus       252 ~~Y~APE~l-~~~~~~~~~DiwSlGvil~ell~-----------g~~Pf~~~~~--------------------~~~~~~  299 (412)
                      +.|+|||++ .+..|+.++||||||||+|||++           |+++|.+.+.                    .+.+..
T Consensus       247 ~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  326 (458)
T 3rp9_A          247 RWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNV  326 (458)
T ss_dssp             CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CHHHHHHHHH
T ss_pred             ccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccCCHHHHHH
Confidence            999999986 45678999999999999999998           8888877542                    122222


Q ss_pred             Hhc--CC------------------------------CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          300 VLM--KT------------------------------PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       300 i~~--~~------------------------------~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +..  +.                              ..++..++++.+||.+||+.||++|+    +++|+++||||++
T Consensus       327 i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~----t~~e~L~Hp~f~~  402 (458)
T 3rp9_A          327 IFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRI----TINECLAHPFFKE  402 (458)
T ss_dssp             HHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSC----CHHHHHHSGGGTT
T ss_pred             HHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccC----CHHHHhcCHhhhh
Confidence            210  00                              11345688999999999999999999    7999999999999


Q ss_pred             CCchhhcccC
Q 042539          348 VRWDLLTDVL  357 (412)
Q Consensus       348 ~~~~~~~~~~  357 (412)
                      ++|.......
T Consensus       403 ~~~~~~e~~~  412 (458)
T 3rp9_A          403 VRIAEVETNA  412 (458)
T ss_dssp             TCCGGGCCCC
T ss_pred             cCCCccCCCC
Confidence            9998765543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3.8e-52  Score=403.80  Aligned_cols=264  Identities=25%  Similarity=0.368  Sum_probs=211.2

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .....+++|++++.||+|+||+||+|++..++    +.||||+++....  .......+.+|+.+++.++||||++++++
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~  101 (329)
T 3gbz_A           28 PSATSIDRYRRITKLGEGTYGEVYKAIDTVTN----ETVAIKRIRLEHE--EEGVPGTAIREVSLLKELQHRNIIELKSV  101 (329)
T ss_dssp             ----CGGGEEEEEEEEECSSSEEEEEEETTTT----EEEEEEECCCCC----------CHHHHHHGGGCCCTTBCCEEEE
T ss_pred             CcccchhhEEEEEEEEecCCeEEEEEEECCCC----ceEEEEEEccccc--ccccchhHHHHHHHHHHcCCCCcceEEEE
Confidence            45677899999999999999999999988754    4599999976542  23345566789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc-----cCCCEEE
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR-----QSGHVTL  166 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~-----~~g~vkL  166 (412)
                      +.+++.+|+|||||.| +|..++....  .+++.+++.++.||+.||.|||++||+||||||+|||++     ..+.+||
T Consensus       102 ~~~~~~~~lv~e~~~~-~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl  178 (329)
T 3gbz_A          102 IHHNHRLHLIFEYAEN-DLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKI  178 (329)
T ss_dssp             EEETTEEEEEEECCSE-EHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEE
T ss_pred             EecCCEEEEEEecCCC-CHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEE
Confidence            9999999999999975 8877776543  499999999999999999999999999999999999995     4455999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.....                                                               .....
T Consensus       179 ~Dfg~a~~~~~~---------------------------------------------------------------~~~~~  195 (329)
T 3gbz_A          179 GDFGLARAFGIP---------------------------------------------------------------IRQFT  195 (329)
T ss_dssp             CCTTHHHHHC----------------------------------------------------------------------
T ss_pred             CcCCCccccCCc---------------------------------------------------------------ccccC
Confidence            999999765211                                                               11123


Q ss_pred             ccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CCC---C-------------
Q 042539          247 SFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPE---F-------------  307 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~~---~-------------  307 (412)
                      ..+||+.|+|||++.+. .++.++|||||||++|+|++|.+||.+.+..+.+.++...  .+.   +             
T Consensus       196 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (329)
T 3gbz_A          196 HEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSF  275 (329)
T ss_dssp             ----CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTC
T ss_pred             CCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhh
Confidence            44789999999999875 4799999999999999999999999999888777666531  110   0             


Q ss_pred             C-------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          308 V-------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       308 ~-------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      +             ..++++.+||.+||+.||.+||    +++|+++||||++.+|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          276 PKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRI----SAKNALEHPYFSHNDFD  328 (329)
T ss_dssp             CCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSC----CHHHHHTSGGGSSSCSC
T ss_pred             hhhccccHhhhcccccCHHHHHHHHHHccCChhhCC----CHHHHhCCcccCCCCCC
Confidence            0             1568899999999999999999    69999999999999985

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=6.5e-52  Score=405.99  Aligned_cols=264  Identities=26%  Similarity=0.438  Sum_probs=220.5

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh-HHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-HEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +..++|++++.||+|+||+||+|+++.++.    .||||++.+...... ......+.+|+.+++.++||||+++++++.
T Consensus        21 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~   96 (351)
T 3c0i_A           21 LFEDVYELCEVIGKGPFSVVRRCINRETGQ----QFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS   96 (351)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             ccccceEEeeEEeeCCCEEEEEEEECCCCC----EEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            334689999999999999999999987554    499999976543211 112456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC---EEEcc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTD  168 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~---vkL~D  168 (412)
                      +++.+|+|||||.||+|..++...  ....+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|
T Consensus        97 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~D  176 (351)
T 3c0i_A           97 SDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGG  176 (351)
T ss_dssp             ETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECC
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEec
Confidence            999999999999999997665543  2335899999999999999999999999999999999999987655   99999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++....                                                               ........
T Consensus       177 fg~a~~~~~---------------------------------------------------------------~~~~~~~~  193 (351)
T 3c0i_A          177 FGVAIQLGE---------------------------------------------------------------SGLVAGGR  193 (351)
T ss_dssp             CTTCEECCT---------------------------------------------------------------TSCBCCCC
T ss_pred             CcceeEecC---------------------------------------------------------------CCeeecCC
Confidence            999975421                                                               11112355


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLE  323 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~  323 (412)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||.+. ..+.+..+.......     ...++++.+||.+||.
T Consensus       194 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  272 (351)
T 3c0i_A          194 VGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT-KERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLM  272 (351)
T ss_dssp             CSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS-HHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTC
T ss_pred             cCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCC
Confidence            7999999999999999999999999999999999999999885 455666666554333     4578999999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      .||++||    ++.++++||||++.++
T Consensus       273 ~dP~~R~----s~~e~l~hp~~~~~~~  295 (351)
T 3c0i_A          273 LDPAERI----TVYEALNHPWLKERDR  295 (351)
T ss_dssp             SSTTTSC----CHHHHHTSHHHHTHHH
T ss_pred             CChhHCc----CHHHHhcChhhcCCcc
Confidence            9999999    6999999999987543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=7.2e-52  Score=395.65  Aligned_cols=260  Identities=28%  Similarity=0.456  Sum_probs=213.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh----------------------HHHHHHH
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK----------------------HEAERRA   70 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~----------------------~~~~~~~   70 (412)
                      ..+.+++|++++.||+|+||+||+|++..++    +.||||++.+......                      ......+
T Consensus         8 ~~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (298)
T 2zv2_A            8 DCVQLNQYTLKDEIGKGSYGVVKLAYNENDN----TYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQV   83 (298)
T ss_dssp             --CEETTEEEEEEEEC--CCEEEEEEETTTT----EEEEEEEEECC-------------------------------CHH
T ss_pred             CceeecceEEEeEEeecCCEEEEEEEECCCC----cEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHH
Confidence            4567899999999999999999999987754    4599999976543211                      1123567


Q ss_pred             HHHHHHHhhcCCCccceeeeeEEe--CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCcee
Q 042539           71 RWEIRVLSRLSHPFLPKLLGSLET--DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAY  148 (412)
Q Consensus        71 ~~Ei~il~~l~hpnIv~l~~~~~~--~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiH  148 (412)
                      .+|+++++.++||||+++++++.+  ++.+|+|||||.|++|..+..   ...+++.+++.++.||+.||+|||++||+|
T Consensus        84 ~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH  160 (298)
T 2zv2_A           84 YQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQKIIH  160 (298)
T ss_dssp             HHHHHHHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            789999999999999999999987  568999999999999976543   345999999999999999999999999999


Q ss_pred             eeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccC
Q 042539          149 RDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSAR  228 (412)
Q Consensus       149 rDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
                      |||||+|||++.+|.+||+|||+++.+...                                                  
T Consensus       161 ~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------  190 (298)
T 2zv2_A          161 RDIKPSNLLVGEDGHIKIADFGVSNEFKGS--------------------------------------------------  190 (298)
T ss_dssp             CCCCGGGEEECTTSCEEECCCTTCEECSSS--------------------------------------------------
T ss_pred             cCCCHHHEEECCCCCEEEecCCCccccccc--------------------------------------------------
Confidence            999999999999999999999999754210                                                  


Q ss_pred             CCCccccccccCCCCCCcccccCCCCccceeecCCC---CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC
Q 042539          229 VSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG---HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP  305 (412)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~---~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~  305 (412)
                                   .......+||+.|+|||++.+..   ++.++|||||||++|+|++|+.||.+.+.......+.....
T Consensus       191 -------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~  257 (298)
T 2zv2_A          191 -------------DALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQAL  257 (298)
T ss_dssp             -------------SCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC
T ss_pred             -------------cccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccC
Confidence                         11123457999999999998765   37899999999999999999999999887777777665443


Q ss_pred             C---CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          306 E---FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       306 ~---~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      .   ....++++.+||.+||..||.+||    ++.++++||||+
T Consensus       258 ~~~~~~~~~~~l~~li~~~l~~dp~~R~----s~~e~l~hp~~~  297 (298)
T 2zv2_A          258 EFPDQPDIAEDLKDLITRMLDKNPESRI----VVPEIKLHPWVT  297 (298)
T ss_dssp             CCCSSSCCCHHHHHHHHHHTCSCTTTSC----CHHHHTTCHHHH
T ss_pred             CCCCccccCHHHHHHHHHHhhcChhhCC----CHHHHhcCcccc
Confidence            3   345789999999999999999999    699999999985

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=3.6e-51  Score=405.98  Aligned_cols=260  Identities=29%  Similarity=0.454  Sum_probs=223.5

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|++++.||+|+||+||+|.++.++.    .||+|++.+...    .....+.+|+.+++.++||||+++++++.
T Consensus        47 ~~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~----~~a~K~~~~~~~----~~~~~~~~E~~il~~l~hpnIv~~~~~~~  118 (387)
T 1kob_A           47 GSVYDYYDILEELGSGAFGVVHRCVEKATGR----VFVAKFINTPYP----LDKYTVKNEISIMNQLHHPKLINLHDAFE  118 (387)
T ss_dssp             SCGGGTEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECCSH----HHHHHHHHHHHHHTTCCSTTBCCEEEEEE
T ss_pred             CccccceEEEEEEecCCCEEEEEEEECCCCC----EEEEEEecccch----hhHHHHHHHHHHHHhCCCcCCCeEEEEEE
Confidence            3445899999999999999999999987554    499999976532    22346778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc--CCCEEEccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ--SGHVTLTDFDL  171 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~--~g~vkL~DFGl  171 (412)
                      +...+|+|||||.||+|..++... ...+++.+++.++.||+.||+|||++||+||||||+|||++.  .+.+||+|||+
T Consensus       119 ~~~~~~lv~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~  197 (387)
T 1kob_A          119 DKYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGL  197 (387)
T ss_dssp             CSSEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTT
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEeccc
Confidence            999999999999999998776543 345999999999999999999999999999999999999974  47899999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++....                                                                .......+||
T Consensus       198 a~~~~~----------------------------------------------------------------~~~~~~~~gt  213 (387)
T 1kob_A          198 ATKLNP----------------------------------------------------------------DEIVKVTTAT  213 (387)
T ss_dssp             CEECCT----------------------------------------------------------------TSCEEEECSS
T ss_pred             ceecCC----------------------------------------------------------------CcceeeeccC
Confidence            975421                                                                1112345799


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----CCCCChHHHHHHHHhhhhCC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----FVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~~~~dli~~~L~~dP  326 (412)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+.+.++......     +...++++.+||.+||..||
T Consensus       214 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  293 (387)
T 1kob_A          214 AEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEP  293 (387)
T ss_dssp             GGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSG
T ss_pred             CCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCCh
Confidence            9999999999999999999999999999999999999999988888887765432     24568999999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCc
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      .+||    ++.++++||||++..+
T Consensus       294 ~~Rp----t~~ell~hp~~~~~~~  313 (387)
T 1kob_A          294 RKRL----TVHDALEHPWLKGDHS  313 (387)
T ss_dssp             GGSC----CHHHHHTSTTTSSCCT
T ss_pred             hHCc----CHHHHhhCccccCCcc
Confidence            9999    7999999999997654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.7e-51  Score=404.68  Aligned_cols=255  Identities=28%  Similarity=0.441  Sum_probs=206.3

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|++++.||+|+||+||+|+++.++.    .||||++.+....     ...+.+|+.+++.++||||+++++++.
T Consensus        16 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~-----~~~~~~E~~~l~~l~hpniv~~~~~~~   86 (361)
T 3uc3_A           16 MHDSDRYDFVKDIGSGNFGVARLMRDKLTKE----LVAVKYIERGAAI-----DENVQREIINHRSLRHPNIVRFKEVIL   86 (361)
T ss_dssp             CCCTTTEEEEEEESSSTTSSEEEEEETTTCC----EEEEEEEESSTTS-----CHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             CCCCCcEEEEEEeccCCCEEEEEEEECCCCc----EEEEEEEecCccc-----cHHHHHHHHHHHhCCCCCCCcEEEEEe
Confidence            5567899999999999999999999987554    4999999765432     234567999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC--EEEccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH--VTLTDFDL  171 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~--vkL~DFGl  171 (412)
                      +.+.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.++.  +||+|||+
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~  164 (361)
T 3uc3_A           87 TPTHLAIIMEYASGGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGY  164 (361)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCC
T ss_pred             eCCEEEEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCc
Confidence            9999999999999999988876654  4999999999999999999999999999999999999988765  99999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+....                                                                .......+||
T Consensus       165 a~~~~~----------------------------------------------------------------~~~~~~~~gt  180 (361)
T 3uc3_A          165 SKSSVL----------------------------------------------------------------HSQPKSTVGT  180 (361)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cccccc----------------------------------------------------------------cCCCCCCcCC
Confidence            864311                                                                1112345799


Q ss_pred             CCCccceeecCCCCCc-hhhHHHHHHHHHHHhhCCCCCCCCCH----HHHHHHHhcCCCC---CCCCChHHHHHHHHhhh
Q 042539          252 EEYVSPEVVRGDGHEF-AVDWWALGILTYEMLYGTTPFRGKNR----KETFRNVLMKTPE---FVGQRTALTDLIQRLLE  323 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~-~~DiwSlGvil~ell~g~~Pf~~~~~----~~~~~~i~~~~~~---~~~~~~~~~dli~~~L~  323 (412)
                      +.|+|||++.+..++. ++|||||||++|+|++|+.||.+.+.    ......+......   ....++++++||.+||+
T Consensus       181 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~  260 (361)
T 3uc3_A          181 PAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFV  260 (361)
T ss_dssp             CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSC
T ss_pred             CCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHcc
Confidence            9999999999888754 49999999999999999999987543    4445555544333   33568999999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      .||.+||    ++.++++||||..
T Consensus       261 ~dP~~Rp----s~~ell~hp~f~~  280 (361)
T 3uc3_A          261 ADPATRI----SIPEIKTHSWFLK  280 (361)
T ss_dssp             SCTTTSC----CHHHHHTSHHHHT
T ss_pred             CChhHCc----CHHHHHhCcchhc
Confidence            9999999    6999999999954

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.4e-51  Score=391.99  Aligned_cols=256  Identities=25%  Similarity=0.402  Sum_probs=210.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++++.||+|+||+||+|++. +    ++.||+|++......  ......+.+|+++++.++||||+++++++.+++
T Consensus         1 ~~~y~~~~~lg~G~~g~V~~~~~~-~----~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   73 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYGVVYKAQNN-Y----GETFALKKIRLEKED--EGIPSTTIREISILKELKHSNIVKLYDVIHTKK   73 (288)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-T----SCEEEEEEECCSSGG--GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS
T ss_pred             CccchhhhhcccCCCEEEEEEEcC-C----CCEEEEEEEeccccc--cccchhHHHHHHHHHhcCCCCEeeeeeEEccCC
Confidence            479999999999999999999883 2    345999999765422  222345667999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+||||+.| +|..++... .+.+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++...
T Consensus        74 ~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  151 (288)
T 1ob3_A           74 RLVLVFEHLDQ-DLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFG  151 (288)
T ss_dssp             CEEEEEECCSE-EHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHC
T ss_pred             eEEEEEEecCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccC
Confidence            99999999976 777666543 3459999999999999999999999999999999999999999999999999997642


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               .......+||+.|+|
T Consensus       152 ~~---------------------------------------------------------------~~~~~~~~~t~~y~a  168 (288)
T 1ob3_A          152 IP---------------------------------------------------------------VRKYTHEIVTLWYRA  168 (288)
T ss_dssp             C------------------------------------------------------------------------CCCTTCC
T ss_pred             cc---------------------------------------------------------------ccccccccccccccC
Confidence            11                                                               011223478999999


Q ss_pred             ceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC----------------------------
Q 042539          257 PEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP----------------------------  305 (412)
Q Consensus       257 PE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~----------------------------  305 (412)
                      ||++.+. .++.++|||||||++|+|++|++||.+.+..+.+.++...  .+                            
T Consensus       169 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (288)
T 1ob3_A          169 PDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWES  248 (288)
T ss_dssp             HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGG
T ss_pred             chheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHH
Confidence            9999875 5799999999999999999999999998887776665421  00                            


Q ss_pred             CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          306 EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       306 ~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      .....++++.+||.+||+.||++||    +++++++||||++.
T Consensus       249 ~~~~~~~~~~~li~~~L~~dP~~Rp----t~~e~l~hp~f~~~  287 (288)
T 1ob3_A          249 FLKGLDESGIDLLSKMLKLDPNQRI----TAKQALEHAYFKEN  287 (288)
T ss_dssp             TCCSCCHHHHHHHHHHTCSSTTTSC----CHHHHHTSGGGGC-
T ss_pred             HhhhcCHHHHHHHHHHcCCCcccCC----CHHHHhcCcchhhc
Confidence            0123578899999999999999999    69999999999864

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-51  Score=419.36  Aligned_cols=262  Identities=25%  Similarity=0.418  Sum_probs=228.8

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ....+.+++|++++.||+|+||+||+|++..++.    .||||++.+..... ......+.+|+.+++.++||||+++++
T Consensus         9 ~~~~~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~----~vAvK~i~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~~   83 (476)
T 2y94_A            9 HDGRVKIGHYILGDTLGVGTFGKVKVGKHELTGH----KVAVKILNRQKIRS-LDVVGKIRREIQNLKLFRHPHIIKLYQ   83 (476)
T ss_dssp             CCSCCEETTEEEEEEEECCSSSCEEEEEETTTCC----EEEEEEEEHHHHHH-TTTHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             cCCCceecCEEEEEEEeeCCCeEEEEEEECCCCC----EEEEEEEEhhhccC-HHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence            3457889999999999999999999999887554    49999997765422 223556788999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+.+.+|+|||||.||+|.+++...  +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||
T Consensus        84 ~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG  161 (476)
T 2y94_A           84 VISTPSDIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG  161 (476)
T ss_dssp             EEECSSEEEEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCS
T ss_pred             EEEECCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEecc
Confidence            999999999999999999998877543  459999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++...                                                                .+....+.+|
T Consensus       162 ~a~~~~----------------------------------------------------------------~~~~~~~~~g  177 (476)
T 2y94_A          162 LSNMMS----------------------------------------------------------------DGEFLRTSCG  177 (476)
T ss_dssp             SCEECC----------------------------------------------------------------TTCCBCCCCS
T ss_pred             chhhcc----------------------------------------------------------------ccccccccCC
Confidence            997542                                                                1122345689


Q ss_pred             CCCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCc
Q 042539          251 TEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       251 t~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~  328 (412)
                      |+.|+|||++.+..+ +.++|||||||++|+|++|..||.+.+....+.++.......+ ..++++.+||.+||+.||.+
T Consensus       178 t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~  257 (476)
T 2y94_A          178 SPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMK  257 (476)
T ss_dssp             CSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTT
T ss_pred             CcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHHHHHHcCCCchh
Confidence            999999999998876 7899999999999999999999999888888888887655444 46789999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||    +++++++||||+.
T Consensus       258 Rp----t~~eil~hp~~~~  272 (476)
T 2y94_A          258 RA----TIKDIREHEWFKQ  272 (476)
T ss_dssp             SC----CHHHHHTCHHHHT
T ss_pred             Cc----CHHHHHhCHHhhh
Confidence            99    7999999999975

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=8.6e-52  Score=403.91  Aligned_cols=257  Identities=28%  Similarity=0.434  Sum_probs=216.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~   94 (412)
                      ..++|++++.||+|+||+||+|+++.++    +.||||++++....        ..+|++++.++ +||||+++++++.+
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~----~~~avK~~~~~~~~--------~~~E~~~l~~~~~hp~iv~~~~~~~~   87 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATN----MEFAVKIIDKSKRD--------PTEEIEILLRYGQHPNIITLKDVYDD   87 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEETTTCC--------CHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCC----CEEEEEEEEcccCC--------hHHHHHHHHHhcCCCCcCeEEEEEEc
Confidence            3578999999999999999999998754    44999999765432        22488888888 69999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC----CCEEEcccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS----GHVTLTDFD  170 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~----g~vkL~DFG  170 (412)
                      ++.+|+|||||.||+|..++...  +.+++.+++.++.||+.||+|||++||+||||||+|||+...    +.+||+|||
T Consensus        88 ~~~~~lv~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg  165 (342)
T 2qr7_A           88 GKYVYVVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFG  165 (342)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCT
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECC
Confidence            99999999999999998777654  459999999999999999999999999999999999998543    359999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++....                                                               ......+.+|
T Consensus       166 ~a~~~~~---------------------------------------------------------------~~~~~~~~~g  182 (342)
T 2qr7_A          166 FAKQLRA---------------------------------------------------------------ENGLLMTPCY  182 (342)
T ss_dssp             TCEECBC---------------------------------------------------------------TTCCBCCSSC
T ss_pred             CcccCcC---------------------------------------------------------------CCCceeccCC
Confidence            9975421                                                               1122345689


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCC---CCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhh
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG---KNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLL  322 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~---~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L  322 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+   .+..+.+..+......+     ...++++++||.+||
T Consensus       183 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  262 (342)
T 2qr7_A          183 TANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKML  262 (342)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHT
T ss_pred             CccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHC
Confidence            9999999999988899999999999999999999999986   45666777776655433     457899999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCCCCchhhcc
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD  355 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~  355 (412)
                      ..||++||    ++.++++||||.  +|+.+..
T Consensus       263 ~~dP~~R~----t~~~il~hp~~~--~~~~~~~  289 (342)
T 2qr7_A          263 HVDPHQRL----TAALVLRHPWIV--HWDQLPQ  289 (342)
T ss_dssp             CSSTTTSC----CHHHHTTSHHHH--TGGGSCC
T ss_pred             CCChhHCc----CHHHHhcCCeec--Ccccccc
Confidence            99999999    699999999995  5765543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.8e-51  Score=392.57  Aligned_cols=260  Identities=27%  Similarity=0.399  Sum_probs=213.8

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++++.||+|+||+||+|++..++.    .||+|++.....  .....+.+.+|+.++++++||||+++++++.+++
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   75 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQ----IVAIKKFLESED--DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR   75 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCc----EEEEEEeecccc--chHHHHHHHHHHHHHHhCCCCCccchhheeecCC
Confidence            5799999999999999999999987544    499999866542  3345667778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+++|||||.|++|..++...  ..+++..++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||+++...
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  153 (311)
T 4agu_A           76 RLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLT  153 (311)
T ss_dssp             EEEEEEECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             eEEEEEEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhcc
Confidence            999999999999998776543  359999999999999999999999999999999999999999999999999997542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               .......+||+.|+|
T Consensus       154 ~~---------------------------------------------------------------~~~~~~~~~~~~y~a  170 (311)
T 4agu_A          154 GP---------------------------------------------------------------SDYYDDEVATRWYRS  170 (311)
T ss_dssp             ---------------------------------------------------------------------------GGGCC
T ss_pred             Cc---------------------------------------------------------------ccccCCCcCCccccC
Confidence            11                                                               111234578999999


Q ss_pred             ceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------C--------
Q 042539          257 PEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------P--------  305 (412)
Q Consensus       257 PE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~--------  305 (412)
                      ||++.+ ..++.++|||||||++|+|++|.+||.+.+..+....+....                      +        
T Consensus       171 PE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
T 4agu_A          171 PELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPL  250 (311)
T ss_dssp             HHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCH
T ss_pred             hHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchh
Confidence            999987 567999999999999999999999999988776655443210                      0        


Q ss_pred             --CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 --EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 --~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                        .++..++++.+||.+||..||.+||    +++++++||||+++.+.
T Consensus       251 ~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~f~~~~~~  294 (311)
T 4agu_A          251 ELKFPNISYPALGLLKGCLHMDPTERL----TCEQLLHHPYFENIREI  294 (311)
T ss_dssp             HHHCTTCCHHHHHHHHHHCCSSTTTSC----CHHHHHTSGGGTTCC--
T ss_pred             hhhcccccHHHHHHHHHHccCChhhcC----CHHHHhcChHHHhccCH
Confidence              1245678899999999999999999    69999999999998764

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.5e-51  Score=398.94  Aligned_cols=259  Identities=24%  Similarity=0.412  Sum_probs=214.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++++.||+|+||+||+|+++.++.    .||||++.....   ......+.+|+.+++.++||||+++++++.++
T Consensus         5 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~   77 (323)
T 3tki_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEE----AVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREG   77 (323)
T ss_dssp             TTTCEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HhhhceeeeEEecCCCEEEEEEEECCCCc----EEEEEEEEcccc---cchHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            46899999999999999999999987554    499999965432   22335567899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +..|+|||||.||+|..++...  ..+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++.+
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  155 (323)
T 3tki_A           78 NIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVF  155 (323)
T ss_dssp             SEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CeEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeecccee
Confidence            9999999999999998876543  35999999999999999999999999999999999999999999999999999755


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ....                                                             ........+||+.|+
T Consensus       156 ~~~~-------------------------------------------------------------~~~~~~~~~gt~~y~  174 (323)
T 3tki_A          156 RYNN-------------------------------------------------------------RERLLNKMCGTLPYV  174 (323)
T ss_dssp             EETT-------------------------------------------------------------EECCBCSCCSCGGGS
T ss_pred             ccCC-------------------------------------------------------------cccccCCCccCcCcc
Confidence            2110                                                             111223568999999


Q ss_pred             cceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCC---CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          256 SPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       256 APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~---~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |||++.+..+ +.++|||||||++|+|++|+.||.+.+.. ..+.......   ..+...++.+.+||.+||..||.+||
T Consensus       175 aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  254 (323)
T 3tki_A          175 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARI  254 (323)
T ss_dssp             CHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             CcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCc
Confidence            9999988776 78999999999999999999999876543 2233333222   22345788999999999999999999


Q ss_pred             CCCCChhhhhcCCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~  348 (412)
                          +++|+++||||+..
T Consensus       255 ----t~~eil~h~~~~~~  268 (323)
T 3tki_A          255 ----TIPDIKKDRWYNKP  268 (323)
T ss_dssp             ----CHHHHTTCTTTTCC
T ss_pred             ----CHHHHhhChhhccc
Confidence                69999999999864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-51  Score=393.92  Aligned_cols=263  Identities=25%  Similarity=0.336  Sum_probs=210.2

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh-hHHHHHHHHHHHHHHhhc---CCCcccee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA-KHEAERRARWEIRVLSRL---SHPFLPKL   88 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~~Ei~il~~l---~hpnIv~l   88 (412)
                      ..+..++|++++.||+|+||+||+|++..++    +.||||++....... .........+|+.+++.+   +||||+++
T Consensus         4 g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~   79 (308)
T 3g33_A            4 GSMATSRYEPVAEIGVGAYGTVYKARDPHSG----HFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRL   79 (308)
T ss_dssp             ------CCEEEEEECCSSSCCEEEEECTTTC----CEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCE
T ss_pred             CcccccceEEEEEEecCCCeEEEEEEECCCC----cEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEe
Confidence            4566789999999999999999999987754    449999997543211 111122334566666666   49999999


Q ss_pred             eeeEEeCC-----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           89 LGSLETDE-----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        89 ~~~~~~~~-----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                      ++++.+..     .+++||||+. ++|..++.......+++.+++.++.||+.||+|||++||+||||||+|||++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~  158 (308)
T 3g33_A           80 MDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGT  158 (308)
T ss_dssp             EEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSC
T ss_pred             eeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCC
Confidence            99998765     5899999996 58888877666556999999999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+|+...                                                                ...
T Consensus       159 ~kl~Dfg~a~~~~----------------------------------------------------------------~~~  174 (308)
T 3g33_A          159 VKLADFGLARIYS----------------------------------------------------------------YQM  174 (308)
T ss_dssp             EEECSCSCTTTST----------------------------------------------------------------TCC
T ss_pred             EEEeeCccccccC----------------------------------------------------------------CCc
Confidence            9999999997542                                                                111


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C---C------------
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P---E------------  306 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~---~------------  306 (412)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|++||.+.+..+...++....  +   .            
T Consensus       175 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  254 (308)
T 3g33_A          175 ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAF  254 (308)
T ss_dssp             CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGS
T ss_pred             ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhcccccc
Confidence            2235679999999999999999999999999999999999999999999888777765311  0   0            


Q ss_pred             -----------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          307 -----------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       307 -----------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                                 .+..++.+.+||.+||+.||++||    ++.|+++||||++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~h~~~~~~  303 (308)
T 3g33_A          255 PPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRI----SAFRALQHSYLHKD  303 (308)
T ss_dssp             CCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSC----CHHHHHTSTTC---
T ss_pred             CCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCC----CHHHHhcCccccCC
Confidence                       124578899999999999999999    79999999999864

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.3e-51  Score=397.98  Aligned_cols=261  Identities=26%  Similarity=0.384  Sum_probs=202.3

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|+++.++    +.||+|+++.....   .....+.+|+++++.++||||+++++++.++
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   75 (317)
T 2pmi_A            3 SSSQFKQLEKLGNGTYATVYKGLNKTTG----VYVALKEVKLDSEE---GTPSTAIREISLMKELKHENIVRLYDVIHTE   75 (317)
T ss_dssp             ----------------CEEEEEECSSSC----CEEEEEEEECCSTT---CSCHHHHHHHHHHTTCCBTTBCCEEEEECCT
T ss_pred             cccceeEeeEECCCCCEEEEEEEECCCC----cEEEEEEeeccccc---ccHHHHHHHHHHHHhcCCCCcceEEEEEEEC
Confidence            4579999999999999999999987754    45999999765321   1234566799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhC----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQN----DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~----~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+|+|||||. |+|..++....    ...+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        76 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  154 (317)
T 2pmi_A           76 NKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGL  154 (317)
T ss_dssp             TEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSS
T ss_pred             CeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCcc
Confidence            99999999998 48877765542    13589999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++....                                                               ........+||
T Consensus       155 ~~~~~~---------------------------------------------------------------~~~~~~~~~~t  171 (317)
T 2pmi_A          155 ARAFGI---------------------------------------------------------------PVNTFSSEVVT  171 (317)
T ss_dssp             CEETTS---------------------------------------------------------------CCCCCCCCCSC
T ss_pred             ceecCC---------------------------------------------------------------CcccCCCCccc
Confidence            975421                                                               01112345789


Q ss_pred             CCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC-----------------------
Q 042539          252 EEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP-----------------------  305 (412)
Q Consensus       252 ~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~-----------------------  305 (412)
                      +.|+|||++.+. .++.++|||||||++|+|++|+.||.+.+..+.+..+...  .+                       
T Consensus       172 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (317)
T 2pmi_A          172 LWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPP  251 (317)
T ss_dssp             CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCC
T ss_pred             ccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccc
Confidence            999999999874 5899999999999999999999999999888777666431  00                       


Q ss_pred             ----------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 ----------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 ----------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                                .....+.++.+||.+||+.||.+||    +++++++||||++..|.
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp----t~~e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          252 RDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRL----SAKQALHHPWFAEYYHH  303 (317)
T ss_dssp             CCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSC----CHHHHTTSGGGGGGCC-
T ss_pred             hhHHHhhcccccccCCHHHHHHHHHHCCCCcccCC----CHHHHhCChhhhcccch
Confidence                      0113567899999999999999999    69999999999987664

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-51  Score=404.01  Aligned_cols=257  Identities=25%  Similarity=0.410  Sum_probs=210.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||+||+|.+..++.    .||||++.+...  .....+++.+|+++++.++||||+++++++....
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~----~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~   97 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGA----KVAIKKLYRPFQ--SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDE   97 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCC----EEEEEECSSTTS--SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCS
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCC----EEEEEEeCcccc--CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCC
Confidence            4689999999999999999999977554    499999966432  3345667888999999999999999999998653


Q ss_pred             ------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           97 ------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        97 ------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                            .+|+||||+ |++|..++..   ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||
T Consensus        98 ~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg  173 (367)
T 1cm8_A           98 TLDDFTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFG  173 (367)
T ss_dssp             STTTCCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             ccccCceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeee
Confidence                  569999999 8899888765   349999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++...                                                                  ......+|
T Consensus       174 ~a~~~~------------------------------------------------------------------~~~~~~~~  187 (367)
T 1cm8_A          174 LARQAD------------------------------------------------------------------SEMTGYVV  187 (367)
T ss_dssp             TCEECC------------------------------------------------------------------SSCCSSCS
T ss_pred             cccccc------------------------------------------------------------------cccCcCcC
Confidence            997531                                                                  11234578


Q ss_pred             CCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC----------------------
Q 042539          251 TEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP----------------------  305 (412)
Q Consensus       251 t~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~----------------------  305 (412)
                      |+.|+|||++.+ ..++.++|||||||++|||++|++||.+.+..+.+..+...  .+                      
T Consensus       188 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  267 (367)
T 1cm8_A          188 TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPE  267 (367)
T ss_dssp             CGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCC
T ss_pred             CCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCC
Confidence            999999999987 67899999999999999999999999999887777666431  10                      


Q ss_pred             --------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          306 --------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       306 --------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                              .+...++.+.+||.+||+.||.+|+    +++++++||||+...+...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~----t~~e~l~hp~f~~~~~~~~  319 (367)
T 1cm8_A          268 LEKKDFASILTNASPLAVNLLEKMLVLDAEQRV----TAGEALAHPYFESLHDTED  319 (367)
T ss_dssp             CCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSC----CHHHHHHSGGGTTTC----
T ss_pred             CCCCCHHHHCCCCCHHHHHHHHHHccCChhHCC----CHHHHhcChHHHhhcCCcc
Confidence                    1235578999999999999999999    7999999999998776543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=5.5e-51  Score=410.40  Aligned_cols=291  Identities=23%  Similarity=0.368  Sum_probs=214.4

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .++|++++.||+|+||+||+|+++.++    +.||||++.+..  ......+++.+|+++|+.++|+||+++++++... 
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~----~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~   98 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTE----KNVAIKKVNRMF--EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDD   98 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTT----EEEEEEEECSTT--TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCC----cEEEEEEeCchh--cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCC
Confidence            478999999999999999999998754    459999997643  2334567788899999999999999999999876 


Q ss_pred             ----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           96 ----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        96 ----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                          ..+|+||||+. |+|..++...  ..+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus        99 ~~~~~~~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGl  175 (432)
T 3n9x_A           99 LLKFDELYIVLEIAD-SDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGL  175 (432)
T ss_dssp             TTTCCCEEEEEECCS-EEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CCcCCeEEEEEecCC-cCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCC
Confidence                57999999996 5887776543  4599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+............                                  +.....    .+   ............+.+||
T Consensus       176 a~~~~~~~~~~~~~----------------------------------~~~~~~----~~---~~~~~~~~~~~~~~~gt  214 (432)
T 3n9x_A          176 ARTINSEKDTNIVN----------------------------------DLEENE----EP---GPHNKNLKKQLTSHVVT  214 (432)
T ss_dssp             CEEC------------------------------------------------------------------------CCCC
T ss_pred             cccccccccccccc----------------------------------cccccc----cc---cccccchhccccCCCCC
Confidence            98763221100000                                  000000    00   00000111234577999


Q ss_pred             CCCccceee-cCCCCCchhhHHHHHHHHHHHhh-----------CCCCCCCCC-----------------HHHHHHHHhc
Q 042539          252 EEYVSPEVV-RGDGHEFAVDWWALGILTYEMLY-----------GTTPFRGKN-----------------RKETFRNVLM  302 (412)
Q Consensus       252 ~~Y~APE~l-~~~~~~~~~DiwSlGvil~ell~-----------g~~Pf~~~~-----------------~~~~~~~i~~  302 (412)
                      +.|+|||++ .+..++.++|||||||++|||++           |.++|.+.+                 ..+.+..+..
T Consensus       215 ~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~  294 (432)
T 3n9x_A          215 RWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFN  294 (432)
T ss_dssp             CTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHHHHHHHHH
Confidence            999999986 45668999999999999999998           566666643                 1222222211


Q ss_pred             --CCC------------------------------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          303 --KTP------------------------------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       303 --~~~------------------------------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                        +.+                              .++..++++.+||.+||+.||++|+    +++|+++||||++++|
T Consensus       295 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~----ta~e~L~Hp~f~~~~~  370 (432)
T 3n9x_A          295 IIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRI----TIDQALDHPYLKDVRK  370 (432)
T ss_dssp             HHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSC----CHHHHHTCGGGTTTCC
T ss_pred             hcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCC----CHHHHhcChhhhhccC
Confidence              000                              1245789999999999999999999    7999999999999999


Q ss_pred             hhhcccCCCCC
Q 042539          351 DLLTDVLRPPF  361 (412)
Q Consensus       351 ~~~~~~~~pp~  361 (412)
                      .........++
T Consensus       371 ~~~e~~~~~~~  381 (432)
T 3n9x_A          371 KKLENFSTKKI  381 (432)
T ss_dssp             TTTC---CCCC
T ss_pred             cccCcCCCCCC
Confidence            87665443333

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=4.2e-51  Score=386.48  Aligned_cols=260  Identities=30%  Similarity=0.510  Sum_probs=224.9

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+.+++|++++.||+|+||+||+|++..++.    .||+|++.+..... ......+.+|+.+++.++||||++++++
T Consensus         3 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~   77 (279)
T 3fdn_A            3 KRQWALEDFEIGRPLGKGKFGNVYLAREKQSKF----ILALKVLFKAQLEK-AGVEHQLRREVEIQSHLRHPNILRLYGY   77 (279)
T ss_dssp             -CCCCGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEHHHHHH-HTCHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             cceeecccEEEeeEEecCCCeEEEEEEEccCCc----EEEEEEEeccccch-hhHHHHHHHHHHHHHcCCCCCCcchhhe
Confidence            457789999999999999999999999887544    49999997655422 2335667889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+.+..|+||||+.||+|..++....  .+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        78 ~~~~~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~  155 (279)
T 3fdn_A           78 FHDATRVYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW  155 (279)
T ss_dssp             EECSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCE
T ss_pred             EecCCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccc
Confidence            999999999999999999988876654  499999999999999999999999999999999999999999999999998


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      +.....                                                                 ......+||
T Consensus       156 ~~~~~~-----------------------------------------------------------------~~~~~~~~~  170 (279)
T 3fdn_A          156 SVHAPS-----------------------------------------------------------------SRRTDLCGT  170 (279)
T ss_dssp             ESCC-------------------------------------------------------------------------CCC
T ss_pred             cccCCc-----------------------------------------------------------------ccccccCCC
Confidence            854311                                                                 112245789


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~  330 (412)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+......++. .++.+.+||.+||..||.+||
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  250 (279)
T 3fdn_A          171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP  250 (279)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSC
T ss_pred             CCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCC
Confidence            9999999999998999999999999999999999999999988888887766555443 678999999999999999999


Q ss_pred             CCCCChhhhhcCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKG  347 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~  347 (412)
                          +++++++||||++
T Consensus       251 ----s~~e~l~h~~~~~  263 (279)
T 3fdn_A          251 ----MLREVLEHPWITA  263 (279)
T ss_dssp             ----CHHHHHHCHHHHH
T ss_pred             ----CHHHHhhCccccC
Confidence                6999999999975

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.1e-51  Score=419.08  Aligned_cols=252  Identities=26%  Similarity=0.443  Sum_probs=207.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .++|++++.||+|+||+||+|++..++.    .||||++.+...  .....+++.+|+.+++.++|||||+++++|... 
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~----~vAiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~  134 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDR----NVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQK  134 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTE----EEEEEEEESGGG--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCC----EEEEEEECcccc--ChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCC
Confidence            5789999999999999999999987554    499999976532  334566788899999999999999999999654 


Q ss_pred             -----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           96 -----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        96 -----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                           ..+|+|||||.|+ |...+.    ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||
T Consensus       135 ~~~~~~~~~lv~E~~~~~-l~~~~~----~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG  209 (464)
T 3ttj_A          135 TLEEFQDVYLVMELMDAN-LCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  209 (464)
T ss_dssp             STTTCCEEEEEEECCSEE-HHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             ccccCCeEEEEEeCCCCC-HHHHHh----hcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEE
Confidence                 4679999999776 433332    238999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+....                                                                .......+|
T Consensus       210 ~a~~~~~----------------------------------------------------------------~~~~~~~~g  225 (464)
T 3ttj_A          210 LARTAGT----------------------------------------------------------------SFMMTPYVV  225 (464)
T ss_dssp             CC---------------------------------------------------------------------CCCC----C
T ss_pred             eeeecCC----------------------------------------------------------------CcccCCCcc
Confidence            9975421                                                                112345689


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------CCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------PEFV  308 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~~~~  308 (412)
                      |+.|+|||++.+..|+.++|||||||++|||++|++||.+.+..+++..++...                      +.+.
T Consensus       226 t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~  305 (464)
T 3ttj_A          226 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYA  305 (464)
T ss_dssp             CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCC
T ss_pred             cccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccC
Confidence            999999999999999999999999999999999999999998887776665311                      1111


Q ss_pred             CC---------------------ChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          309 GQ---------------------RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       309 ~~---------------------~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ..                     ++++++||.+||+.||++|+    +++|+++||||+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~----ta~e~L~Hp~~~~  361 (464)
T 3ttj_A          306 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRI----SVDDALQHPYINV  361 (464)
T ss_dssp             CCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSC----CHHHHHTSTTTGG
T ss_pred             CCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCC----CHHHHhcChhhhh
Confidence            10                     35689999999999999999    7999999999985

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=5.6e-51  Score=393.90  Aligned_cols=266  Identities=26%  Similarity=0.401  Sum_probs=228.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh--HHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ....++|++++.||+|+||.||+|+++.++.    .||+|++++......  ......+.+|+.++++++||||++++++
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   83 (321)
T 2a2a_A            8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGL----EYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDV   83 (321)
T ss_dssp             SCHHHHEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hhhhccEEEeeEeeecCCEEEEEEEECCCCe----EEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEE
Confidence            3346789999999999999999999987554    499999976543211  1124567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC----CEEEc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG----HVTLT  167 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g----~vkL~  167 (412)
                      +.+.+.+|+|||||.|++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++    .+||+
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~  161 (321)
T 2a2a_A           84 YENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLI  161 (321)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred             EecCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEc
Confidence            99999999999999999998887653  4599999999999999999999999999999999999999988    79999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++....                                                                ......
T Consensus       162 Dfg~~~~~~~----------------------------------------------------------------~~~~~~  177 (321)
T 2a2a_A          162 DFGLAHEIED----------------------------------------------------------------GVEFKN  177 (321)
T ss_dssp             CCTTCEECCT----------------------------------------------------------------TCCCCC
T ss_pred             cCccceecCc----------------------------------------------------------------cccccc
Confidence            9999975421                                                                111234


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhh
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLL  322 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L  322 (412)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+......+     ...+..+.+||.+||
T Consensus       178 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l  257 (321)
T 2a2a_A          178 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLL  257 (321)
T ss_dssp             CCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTS
T ss_pred             cCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHc
Confidence            579999999999999999999999999999999999999999999888888887655443     356789999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                      ..||.+||    +++++++||||++++|...
T Consensus       258 ~~dp~~Rp----s~~e~l~hp~~~~~~~~~~  284 (321)
T 2a2a_A          258 VKETRKRL----TIQEALRHPWITPVDNQQA  284 (321)
T ss_dssp             CSSTTTSC----CHHHHHHSTTTSCSSHHHH
T ss_pred             CCChhhCc----CHHHHhcCccccCCCcccc
Confidence            99999999    6999999999999988643

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.5e-50  Score=380.65  Aligned_cols=260  Identities=26%  Similarity=0.414  Sum_probs=224.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||.||+|.++.++.    .||+|++......  ......+.+|+.++++++||||+++++++.++
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   77 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGL----EFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEE   77 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEGGGCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCc----eEEEEEeecccCC--HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcC
Confidence            35899999999999999999999887554    4999999766542  23456677899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC---EEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~---vkL~DFGla  172 (412)
                      +..|+||||+.|++|...+....  .+++..+..++.|++.||.|||++||+||||||+|||++.++.   +||+|||++
T Consensus        78 ~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~  155 (284)
T 3kk8_A           78 SFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA  155 (284)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             CEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceee
Confidence            99999999999999987776654  4999999999999999999999999999999999999987665   999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      .....                                                                ........||+
T Consensus       156 ~~~~~----------------------------------------------------------------~~~~~~~~~~~  171 (284)
T 3kk8_A          156 IEVND----------------------------------------------------------------SEAWHGFAGTP  171 (284)
T ss_dssp             EECCS----------------------------------------------------------------SCBCCCSCSCG
T ss_pred             EEccc----------------------------------------------------------------CccccCCCCCc
Confidence            65421                                                                11223457999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|+|||++.+..++.++|||||||++|+|++|+.||.+.+.......+......+     ...++++.+||.+||+.||+
T Consensus       172 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~  251 (284)
T 3kk8_A          172 GYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPK  251 (284)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTT
T ss_pred             CCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChh
Confidence            9999999999999999999999999999999999999999888888776654332     35689999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCCch
Q 042539          328 KRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      +||    +++++++||||++..+.
T Consensus       252 ~Rp----s~~~~l~h~~~~~~~~~  271 (284)
T 3kk8_A          252 KRI----TADQALKVPWICNRERV  271 (284)
T ss_dssp             TSC----CHHHHTTSHHHHSCCCG
T ss_pred             hCC----CHHHHhcCccccCChhH
Confidence            999    69999999999876653

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.3e-50  Score=395.46  Aligned_cols=255  Identities=24%  Similarity=0.377  Sum_probs=215.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-----CCccc
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-----HPFLP   86 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-----hpnIv   86 (412)
                      ...+..++|+++++||+|+||+||+|++..++    +.||||++++..     .......+|+.+++.+.     ||||+
T Consensus        29 ~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~----~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~h~~iv   99 (360)
T 3llt_A           29 KGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNK----KYYAVKVVRNIK-----KYTRSAKIEADILKKIQNDDINNNNIV   99 (360)
T ss_dssp             TTCEETTTEEEEEEEEECSSEEEEEEEETTTC----CEEEEEEECSCH-----HHHHHHHHHHHHHHHTCCCSTTGGGBC
T ss_pred             cceEecCEEEEEEEEcccCCeEEEEEEECCCC----eEEEEEEeccch-----hhhhhhHHHHHHHHHhcccCCCCCCee
Confidence            44556689999999999999999999997754    449999996432     23344566999999997     99999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc------
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ------  160 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~------  160 (412)
                      ++++++...+.+|+||||| |++|..++.......+++.+++.++.||+.||+|||++||+||||||+|||++.      
T Consensus       100 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~  178 (360)
T 3llt_A          100 KYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKS  178 (360)
T ss_dssp             CEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEE
T ss_pred             cccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEcccccccc
Confidence            9999999999999999999 999998888766667999999999999999999999999999999999999975      


Q ss_pred             -------------------CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCcccc
Q 042539          161 -------------------SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGL  221 (412)
Q Consensus       161 -------------------~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (412)
                                         ++.+||+|||+|+...                                             
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~---------------------------------------------  213 (360)
T 3llt_A          179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKS---------------------------------------------  213 (360)
T ss_dssp             EEEEECTTTCCEEEEEEESCCCEEECCCTTCEETT---------------------------------------------
T ss_pred             ccchhcccccccccccccCCCCEEEEeccCceecC---------------------------------------------
Confidence                               7899999999996431                                             


Q ss_pred             ccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh
Q 042539          222 KKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL  301 (412)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~  301 (412)
                                           ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+.
T Consensus       214 ---------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~  272 (360)
T 3llt_A          214 ---------------------DYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMME  272 (360)
T ss_dssp             ---------------------SCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             ---------------------CCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHH
Confidence                                 11234579999999999999999999999999999999999999999988777665554


Q ss_pred             cCCCCCC-----------------------------------------------CCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          302 MKTPEFV-----------------------------------------------GQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       302 ~~~~~~~-----------------------------------------------~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ......+                                               ..++.+.+||.+||+.||++||    
T Consensus       273 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp----  348 (360)
T 3llt_A          273 SIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRP----  348 (360)
T ss_dssp             HHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSC----
T ss_pred             HhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCC----
Confidence            3211110                                               1136688999999999999999    


Q ss_pred             ChhhhhcCCCCC
Q 042539          335 GACEIKEHVFFK  346 (412)
Q Consensus       335 ~~~e~l~h~ff~  346 (412)
                      +++|+++||||+
T Consensus       349 ta~elL~hp~f~  360 (360)
T 3llt_A          349 SPAELLKHKFLE  360 (360)
T ss_dssp             CHHHHTTSGGGC
T ss_pred             CHHHHhcCcccC
Confidence            799999999995

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=6.4e-51  Score=394.84  Aligned_cols=263  Identities=27%  Similarity=0.400  Sum_probs=222.5

Q ss_pred             cCceee-eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeC
Q 042539           18 DNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETD   95 (412)
Q Consensus        18 ~~y~~~-~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~   95 (412)
                      ++|.+. +.||+|+||+||+|+++.++.    .||+|++++.....  .....+.+|+.+++.+. ||||+++++++.+.
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~  101 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISKSTGQ----EYAAKFLKKRRRGQ--DCRAEILHEIAVLELAKSCPRVINLHEVYENT  101 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEESEETTE--ECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             hEEeeccceeCCCCCeEEEEEEECCCCC----EEEEEEEehhhcch--HHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence            467777 899999999999999987554    49999997654322  23456777999999996 79999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc---CCCEEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ---SGHVTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~---~g~vkL~DFGla  172 (412)
                      +.+|+|||||.||+|..++.......+++.+++.++.||+.||+|||++||+||||||+|||++.   +|.+||+|||++
T Consensus       102 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a  181 (327)
T 3lm5_A          102 SEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMS  181 (327)
T ss_dssp             SEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGC
T ss_pred             CeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccc
Confidence            99999999999999988876555567999999999999999999999999999999999999998   789999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.....                                                                ......+||+
T Consensus       182 ~~~~~~----------------------------------------------------------------~~~~~~~gt~  197 (327)
T 3lm5_A          182 RKIGHA----------------------------------------------------------------CELREIMGTP  197 (327)
T ss_dssp             EEC-------------------------------------------------------------------------CCCG
T ss_pred             cccCCc----------------------------------------------------------------cccccccCCc
Confidence            765211                                                                1123457999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-----CCCCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-----EFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-----~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+.....     .+...++.+.+||.+||+.||.
T Consensus       198 ~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  277 (327)
T 3lm5_A          198 EYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPE  277 (327)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGG
T ss_pred             CccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChh
Confidence            99999999999999999999999999999999999999998888777765432     2345678999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCCchhhc
Q 042539          328 KRLGYLRGACEIKEHVFFKGVRWDLLT  354 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~~~~~~~  354 (412)
                      +||    +++++++||||++.+|+.+.
T Consensus       278 ~Rp----t~~~ll~h~~~~~~~~~~~~  300 (327)
T 3lm5_A          278 KRP----TAEICLSHSWLQQWDFENLF  300 (327)
T ss_dssp             GSC----CHHHHTTCGGGCCCCTTCC-
T ss_pred             hCc----CHHHHhCCHhhccccccccc
Confidence            999    69999999999999997553

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.3e-51  Score=398.65  Aligned_cols=267  Identities=26%  Similarity=0.416  Sum_probs=220.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh-hHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA-KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||+|++.+..... .......+.+|+++++.++||||+++++++.+.+
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIENQTRA----IRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hheeecceeeecCCeEEEEEEECCCCc----eEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence            689999999999999999999877544    49999997765421 2234567888999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhh--------------------------------------CCCCCCHHHHHHHHHHHHHHH
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQ--------------------------------------NDRVFSPSVIRFYLSEIICAI  138 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~--------------------------------------~~~~l~~~~~~~~~~qi~~aL  138 (412)
                      .+|+|||||.||+|..++...                                      ....+++..++.++.||+.||
T Consensus       102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  181 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL  181 (345)
T ss_dssp             EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence            999999999999998776411                                      011246788999999999999


Q ss_pred             HHHHHcCceeeeCCCCceEEccCC--CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCC
Q 042539          139 EHLHNMGIAYRDLKPENILIRQSG--HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPE  216 (412)
Q Consensus       139 ~yLH~~~iiHrDlKp~NiLl~~~g--~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (412)
                      +|||++||+||||||+|||++.++  .+||+|||+++.+.....                                    
T Consensus       182 ~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~------------------------------------  225 (345)
T 3hko_A          182 HYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNN------------------------------------  225 (345)
T ss_dssp             HHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTC------------------------------------
T ss_pred             HHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCc------------------------------------
Confidence            999999999999999999998777  899999999976532100                                    


Q ss_pred             CccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH
Q 042539          217 NKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRK  294 (412)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~  294 (412)
                                             .........+||+.|+|||++.+  ..++.++|||||||++|+|++|+.||.+.+..
T Consensus       226 -----------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~  282 (345)
T 3hko_A          226 -----------------------GEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA  282 (345)
T ss_dssp             -----------------------C--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             -----------------------cccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChH
Confidence                                   00112235579999999999976  56789999999999999999999999999998


Q ss_pred             HHHHHHhcCCCCCC-----CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          295 ETFRNVLMKTPEFV-----GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       295 ~~~~~i~~~~~~~~-----~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      +...++......+.     ..++++.+||.+||+.||.+||    ++.++++||||++..|.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----s~~~~l~hp~~~~~~~~  340 (345)
T 3hko_A          283 DTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERF----DAMRALQHPWISQFSDK  340 (345)
T ss_dssp             HHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSC----CHHHHHHSHHHHTTSSC
T ss_pred             HHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCC----CHHHHhcChhhccChHh
Confidence            88888876654333     3678999999999999999999    69999999999987654

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=5e-51  Score=406.77  Aligned_cols=252  Identities=26%  Similarity=0.430  Sum_probs=203.0

Q ss_pred             CCccCceee-eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeE
Q 042539           15 LDLDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSL   92 (412)
Q Consensus        15 ~~~~~y~~~-~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~   92 (412)
                      ..+++|.++ +.||+|+||+||+|+++.++.    .||||+++...         .+.+|+.++.++ +||||++++++|
T Consensus        58 ~~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~----~vAiK~~~~~~---------~~~~E~~~~~~~~~hp~iv~l~~~~  124 (400)
T 1nxk_A           58 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQE----KFALKMLQDCP---------KARREVELHWRASQCPHIVRIVDVY  124 (400)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECSH---------HHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred             cccccceeccceeeeccCeEEEEEEECCCCC----EEEEEEeCcch---------hHHHHHHHHHHhcCCCCcceEeEEE
Confidence            346788887 789999999999999987554    49999996421         234588887544 799999999998


Q ss_pred             Ee----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc---CCCEE
Q 042539           93 ET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ---SGHVT  165 (412)
Q Consensus        93 ~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~---~g~vk  165 (412)
                      ..    ...+|+|||||.||+|..++.......+++.+++.++.||+.||.|||++||+||||||+|||++.   ++.+|
T Consensus       125 ~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~k  204 (400)
T 1nxk_A          125 ENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILK  204 (400)
T ss_dssp             EEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEE
T ss_pred             eecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEE
Confidence            76    568999999999999998887655556999999999999999999999999999999999999998   78999


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|||+++....                                                                ....
T Consensus       205 l~DFG~a~~~~~----------------------------------------------------------------~~~~  220 (400)
T 1nxk_A          205 LTDFGFAKETTS----------------------------------------------------------------HNSL  220 (400)
T ss_dssp             ECCCTTCEECC---------------------------------------------------------------------
T ss_pred             EEecccccccCC----------------------------------------------------------------CCcc
Confidence            999999975421                                                                1122


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH----HHHHHhcCCC-----CCCCCChHHHH
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE----TFRNVLMKTP-----EFVGQRTALTD  316 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~----~~~~i~~~~~-----~~~~~~~~~~d  316 (412)
                      .+.+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+...    ....+.....     .+..+++++.+
T Consensus       221 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  300 (400)
T 1nxk_A          221 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKM  300 (400)
T ss_dssp             ------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHH
T ss_pred             ccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHH
Confidence            35689999999999999999999999999999999999999998754321    3334443332     23457899999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||.+||+.||++||    ++.++++||||.+
T Consensus       301 li~~~L~~dP~~Rp----t~~eil~hp~~~~  327 (400)
T 1nxk_A          301 LIRNLLKTEPTQRM----TITEFMNHPWIMQ  327 (400)
T ss_dssp             HHHTTSCSSGGGSC----CHHHHHHSHHHHT
T ss_pred             HHHHHCCCChhHCc----CHHHHhcCccccC
Confidence            99999999999999    6999999999975

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.1e-50  Score=384.62  Aligned_cols=261  Identities=29%  Similarity=0.494  Sum_probs=226.1

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      +...+.+++|++++.||+|+||.||+|++..++    ..||+|++.+..... ......+.+|+.+++.++||||+++++
T Consensus         7 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~   81 (284)
T 2vgo_A            7 PKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNK----FIMALKVLFKSQLEK-EGVEHQLRREIEIQSHLRHPNILRMYN   81 (284)
T ss_dssp             ---CCCGGGEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEEHHHHHH-TTCHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             CccchhhhhceeeheecCCCCeEEEEEEEcCCC----cEEEEEEEcccccch-HHHHHHHHHHHHHHhcCCCCCEeeEEE
Confidence            356788999999999999999999999987644    459999997654322 223456778999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+++.+|+||||+.||+|..++....  .+++..+..++.||+.||.|||++||+||||||+||+++.+|.+||+|||
T Consensus        82 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg  159 (284)
T 2vgo_A           82 YFHDRKRIYLMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFG  159 (284)
T ss_dssp             EEECSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCT
T ss_pred             EEEcCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEeccc
Confidence            9999999999999999999988877654  49999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      ++.....                                                                 ......+|
T Consensus       160 ~~~~~~~-----------------------------------------------------------------~~~~~~~~  174 (284)
T 2vgo_A          160 WSVHAPS-----------------------------------------------------------------LRRRTMCG  174 (284)
T ss_dssp             TCEECSS-----------------------------------------------------------------SCBCCCCS
T ss_pred             ccccCcc-----------------------------------------------------------------cccccccC
Confidence            8864310                                                                 11234579


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCcc
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+......+ ...++++.+||.+||..||.+|
T Consensus       175 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  254 (284)
T 2vgo_A          175 TLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQR  254 (284)
T ss_dssp             CGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHSCSSGGGS
T ss_pred             CCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCCcCCHHHHHHHHHHhhcCHhhC
Confidence            999999999999999999999999999999999999999998888888877665544 3467899999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~  347 (412)
                      |    +++++++||||+.
T Consensus       255 p----s~~~ll~h~~~~~  268 (284)
T 2vgo_A          255 L----PLKGVMEHPWVKA  268 (284)
T ss_dssp             C----CHHHHHTCHHHHH
T ss_pred             C----CHHHHhhCHHHHh
Confidence            9    6999999999974

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=7.2e-51  Score=415.47  Aligned_cols=261  Identities=28%  Similarity=0.457  Sum_probs=222.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ......++|++++.||+|+||+||+|+++.++.    .||||++.+.....  .....+.+|+.++++++||||++++++
T Consensus        16 ~~g~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~   89 (486)
T 3mwu_A           16 FQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQ----EYAVKVINKASAKN--KDTSTILREVELLKKLDHPNIMKLFEI   89 (486)
T ss_dssp             TCCHHHHHEEEEEEEECCSSSEEEEEEETTTCC----EEEEEEEEHHHHBC--SCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCChhcceEEeEEEeecCCEEEEEEEECCCCC----EEEEEEEecccccc--hHHHHHHHHHHHHHhCCCCCcCeEEEE
Confidence            334456899999999999999999999987554    49999997654322  224567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc---cCCCEEEcc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTD  168 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~---~~g~vkL~D  168 (412)
                      +.+...+|+|||||.||+|...+....  .+++.+++.++.||+.||.|||++||+||||||+|||++   .++.+||+|
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  167 (486)
T 3mwu_A           90 LEDSSSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIID  167 (486)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECS
T ss_pred             EEcCCEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEE
Confidence            999999999999999999987776654  499999999999999999999999999999999999995   456799999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+|+....                                                                .......
T Consensus       168 fg~a~~~~~----------------------------------------------------------------~~~~~~~  183 (486)
T 3mwu_A          168 FGLSTCFQQ----------------------------------------------------------------NTKMKDR  183 (486)
T ss_dssp             CSCTTTBCC----------------------------------------------------------------C----CC
T ss_pred             CCcCeECCC----------------------------------------------------------------CCccCCC
Confidence            999975421                                                                1122345


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----CCCCChHHHHHHHHhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----FVGQRTALTDLIQRLLE  323 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~~~~dli~~~L~  323 (412)
                      +||+.|+|||++.+. ++.++|||||||++|+|++|.+||.+.+..+.+..+......     +...++++++||.+||+
T Consensus       184 ~gt~~y~aPE~~~~~-~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  262 (486)
T 3mwu_A          184 IGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLT  262 (486)
T ss_dssp             TTGGGGCCGGGGGSC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTC
T ss_pred             cCCCCCCCHHHhCCC-CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcC
Confidence            799999999999874 899999999999999999999999999999988888765433     34568999999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      .||.+||    ++.++++||||+...
T Consensus       263 ~dp~~R~----t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          263 FHPSLRI----TATQCLEHPWIQKYS  284 (486)
T ss_dssp             SSTTTSC----CHHHHHHCHHHHHTC
T ss_pred             CChhhCc----CHHHHhcCHhhccCc
Confidence            9999999    699999999998654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=2.2e-50  Score=390.98  Aligned_cols=252  Identities=26%  Similarity=0.451  Sum_probs=195.3

Q ss_pred             ccCceee---eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeE
Q 042539           17 LDNLKAL---KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSL   92 (412)
Q Consensus        17 ~~~y~~~---~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~   92 (412)
                      .++|++.   +.||+|+||+||+|.++.++.    .||||++.+..       .....+|+.+++.+. ||||+++++++
T Consensus         7 ~~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~-------~~~~~~e~~~l~~l~~h~niv~~~~~~   75 (325)
T 3kn6_A            7 YQHYDLDLKDKPLGEGSFSICRKCVHKKSNQ----AFAVKIISKRM-------EANTQKEITALKLCEGHPNIVKLHEVF   75 (325)
T ss_dssp             HHHEEECTTSCCSEEETTEEEEEEEETTTCC----EEEEEEEEGGG-------HHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             hhccccccCCCccccCCCeEEEEEEECCCCC----EEEEEEEChhh-------hhhHHHHHHHHHHhcCCCCeeEEEEEE
Confidence            4677776   789999999999999987554    49999996542       234556999999997 99999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC---CEEEccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---HVTLTDF  169 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g---~vkL~DF  169 (412)
                      .++..+|+|||||.||+|..++...  ..+++.+++.++.||+.||+|||++||+||||||+|||++.++   .+||+||
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Df  153 (325)
T 3kn6_A           76 HDQLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDF  153 (325)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCC
T ss_pred             EcCCEEEEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEecc
Confidence            9999999999999999998887764  3599999999999999999999999999999999999998776   7999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++....                                                               ......+.+
T Consensus       154 g~a~~~~~---------------------------------------------------------------~~~~~~~~~  170 (325)
T 3kn6_A          154 GFARLKPP---------------------------------------------------------------DNQPLKTPC  170 (325)
T ss_dssp             TTCEECCC------------------------------------------------------------------------
T ss_pred             ccceecCC---------------------------------------------------------------CCCcccccC
Confidence            99975421                                                               111223557


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH-------HHHHHHHhcCCCCCC-----CCChHHHHH
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-------KETFRNVLMKTPEFV-----GQRTALTDL  317 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-------~~~~~~i~~~~~~~~-----~~~~~~~dl  317 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.       .+.+..+......+.     ..++++++|
T Consensus       171 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  250 (325)
T 3kn6_A          171 FTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDL  250 (325)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHH
T ss_pred             CCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHH
Confidence            89999999999999999999999999999999999999987543       456666666554443     468999999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      |.+||+.||.+||    +++++++||||++.
T Consensus       251 i~~~L~~dP~~Rp----t~~ell~h~w~~~~  277 (325)
T 3kn6_A          251 IQGLLTVDPNKRL----KMSGLRYNEWLQDG  277 (325)
T ss_dssp             HHHHHCCCTTTCC----CTTTSTTCGGGCTT
T ss_pred             HHHHCCCChhHCC----CHHHHhcChhhccC
Confidence            9999999999999    68999999999863

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.4e-50  Score=396.33  Aligned_cols=255  Identities=31%  Similarity=0.455  Sum_probs=204.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++.+.||+|+||+||+|+++.++.    .||||++++..      ..+.+.+|+.+++.++||||+++++++.+.
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~----~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~  120 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQK----PYALKVLKKTV------DKKIVRTEIGVLLRLSHPNIIKLKEIFETP  120 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECS
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCc----EEEEEEeccch------hHHHHHHHHHHHHhCCCCCCcceeeeEecC
Confidence            34679999999999999999999987544    49999997542      234566799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc---CCCEEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ---SGHVTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~---~g~vkL~DFGla  172 (412)
                      +.+|+||||+.||+|.+++...  +.+++.+++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||++
T Consensus       121 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a  198 (349)
T 2w4o_A          121 TEISLVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLS  198 (349)
T ss_dssp             SEEEEEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC--
T ss_pred             CeEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccc
Confidence            9999999999999998877543  45999999999999999999999999999999999999976   889999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....                                                                .......+||+
T Consensus       199 ~~~~~----------------------------------------------------------------~~~~~~~~gt~  214 (349)
T 2w4o_A          199 KIVEH----------------------------------------------------------------QVLMKTVCGTP  214 (349)
T ss_dssp             ------------------------------------------------------------------------------CG
T ss_pred             cccCc----------------------------------------------------------------ccccccccCCC
Confidence            75421                                                                11123457999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCCCC-----CCCCChHHHHHHHHhhhhCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKTPE-----FVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~dli~~~L~~dP  326 (412)
                      .|+|||++.+..++.++|||||||++|+|++|..||.+.... ..+..+......     +...+.++.+||.+||..||
T Consensus       215 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  294 (349)
T 2w4o_A          215 GYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDP  294 (349)
T ss_dssp             GGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSG
T ss_pred             CccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCCh
Confidence            999999999999999999999999999999999999875544 466666654432     24568899999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCc
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      ++||    ++.++++||||.+..+
T Consensus       295 ~~Rp----t~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          295 KKRL----TTFQALQHPWVTGKAA  314 (349)
T ss_dssp             GGSC----CHHHHHHSTTTTSTTC
T ss_pred             hhCc----CHHHHhcCcccCCCcc
Confidence            9999    6999999999997654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=4.8e-50  Score=394.37  Aligned_cols=274  Identities=23%  Similarity=0.349  Sum_probs=220.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--   95 (412)
                      ++|++++.||+|+||+||+|++..++    +.||||++....   .......+.+|++++++++||||+++++++...  
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~----~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   99 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNK----VRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTI   99 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCC----eEEEEEEecccc---CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCc
Confidence            58999999999999999999987754    459999997533   233456778899999999999999999999765  


Q ss_pred             ---CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           96 ---EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        96 ---~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                         ..+|+||||+. |+|..++...   .+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus       100 ~~~~~~~iv~e~~~-~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a  175 (364)
T 3qyz_A          100 EQMKDVYIVQDLME-TDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA  175 (364)
T ss_dssp             TTCCCEEEEEECCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             cccceEEEEEcccC-cCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcce
Confidence               47999999997 4787776543   4999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +......                                                            .........+||+
T Consensus       176 ~~~~~~~------------------------------------------------------------~~~~~~~~~~gt~  195 (364)
T 3qyz_A          176 RVADPDH------------------------------------------------------------DHTGFLTEYVATR  195 (364)
T ss_dssp             EECCGGG------------------------------------------------------------CBCCTTCCCCSCG
T ss_pred             EecCCCC------------------------------------------------------------Ccccccccccccc
Confidence            7653211                                                            0111224568999


Q ss_pred             CCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC------------------------
Q 042539          253 EYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP------------------------  305 (412)
Q Consensus       253 ~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~------------------------  305 (412)
                      .|+|||++.+ ..++.++|||||||++|+|++|++||.+.+..+.+..+...  .+                        
T Consensus       196 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (364)
T 3qyz_A          196 WYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKN  275 (364)
T ss_dssp             GGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCC
T ss_pred             CCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCcc
Confidence            9999998765 45899999999999999999999999998766665555421  00                        


Q ss_pred             ------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCC
Q 042539          306 ------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSRE  366 (412)
Q Consensus       306 ------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~  366 (412)
                            .++..++++.+||.+||+.||.+||    +++++++||||+...-........+||....+
T Consensus       276 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~hp~~~~~~~~~~~~~~~~~~~~~~~  338 (364)
T 3qyz_A          276 KVPWNRLFPNADSKALDLLDKMLTFNPHKRI----EVEQALAHPYLEQYYDPSDEPIAEAPFKFDME  338 (364)
T ss_dssp             CCCHHHHCTTSCHHHHHHHHHHTCSSTTTSC----CHHHHHTSGGGTTTCCGGGSCCCSSCCCCC--
T ss_pred             CCCHHHhCCCCCHHHHHHHHHHcCCChhhCC----CHHHHhcCcchhhccCcccccCCCCcCCcccc
Confidence                  0135678999999999999999999    79999999999986444444445556655433

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.3e-50  Score=382.06  Aligned_cols=257  Identities=28%  Similarity=0.467  Sum_probs=214.9

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ...++|++.+.||+|+||+||+|+++.++.    .||+|++.+.....   ....+.+|+++++.++||||+++++++.+
T Consensus        19 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   91 (285)
T 3is5_A           19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGL----ERVIKTINKDRSQV---PMEQIEAEIEVLKSLDHPNIIKIFEVFED   91 (285)
T ss_dssp             CHHHHEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEGGGCCS---CHHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             ChhhheeecceeccCCCeEEEEEEEccCCc----eEEEEEeeccccch---hHHHHHHHHHHHHhCCCchHHhHHHheec
Confidence            344899999999999999999999877544    49999997654321   24566779999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE---ccCCCEEEccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDF  169 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl---~~~g~vkL~DF  169 (412)
                      .+.+|+|||||.||+|..++...  ....+++..++.++.||+.||+|||++||+||||||+|||+   +.++.+||+||
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Df  171 (285)
T 3is5_A           92 YHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDF  171 (285)
T ss_dssp             SSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCC
T ss_pred             CCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEee
Confidence            99999999999999998776543  23459999999999999999999999999999999999999   45688999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.+..                                                                .......+
T Consensus       172 g~a~~~~~----------------------------------------------------------------~~~~~~~~  187 (285)
T 3is5_A          172 GLAELFKS----------------------------------------------------------------DEHSTNAA  187 (285)
T ss_dssp             CCCCC--------------------------------------------------------------------------C
T ss_pred             ecceecCC----------------------------------------------------------------cccCcCcc
Confidence            99975421                                                                11123457


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC----CCCChHHHHHHHHhhhhC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~----~~~~~~~~dli~~~L~~d  325 (412)
                      ||+.|+|||++. ..++.++|||||||++|+|++|+.||.+.+..+....+....+.+    ...++++.+||.+||+.|
T Consensus       188 ~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  266 (285)
T 3is5_A          188 GTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKD  266 (285)
T ss_dssp             TTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSC
T ss_pred             cccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCC
Confidence            999999999986 457899999999999999999999999998888777766544433    236789999999999999


Q ss_pred             CCccCCCCCChhhhhcCCCCCC
Q 042539          326 PVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      |.+||    ++.|+++||||++
T Consensus       267 P~~Rp----s~~e~l~hp~f~~  284 (285)
T 3is5_A          267 PERRP----SAAQVLHHEWFKQ  284 (285)
T ss_dssp             TTTSC----CHHHHHTSGGGGC
T ss_pred             hhhCc----CHHHHhcCHHhhc
Confidence            99999    6999999999985

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=3.7e-51  Score=417.29  Aligned_cols=263  Identities=27%  Similarity=0.463  Sum_probs=226.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ......++|++++.||+|+||+||+|+++.++.    .||||++.+...... .....+.+|+.++++++||||++++++
T Consensus        20 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~~avK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~   94 (484)
T 3nyv_A           20 STAIFSDRYKGQRVLGKGSFGEVILCKDKITGQ----ECAVKVISKRQVKQK-TDKESLLREVQLLKQLDHPNIMKLYEF   94 (484)
T ss_dssp             CCCCHHHHEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEETTTCCBS-SCHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             CCCcccCceEEeeEEecCCCEEEEEEEECCCCC----EEEEEEEEhhhcccc-hHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            345566899999999999999999999987554    499999977654322 234567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE---ccCCCEEEcc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTD  168 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl---~~~g~vkL~D  168 (412)
                      +.+.+.+|+|||||.||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|
T Consensus        95 ~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  172 (484)
T 3nyv_A           95 FEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIID  172 (484)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECC
T ss_pred             EEeCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEe
Confidence            99999999999999999998777654  459999999999999999999999999999999999999   5678999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+|+.+..                                                                .......
T Consensus       173 fg~a~~~~~----------------------------------------------------------------~~~~~~~  188 (484)
T 3nyv_A          173 FGLSTHFEA----------------------------------------------------------------SKKMKDK  188 (484)
T ss_dssp             TTHHHHBCC----------------------------------------------------------------CCSHHHH
T ss_pred             eeeeEEccc----------------------------------------------------------------ccccccC
Confidence            999976521                                                                1122345


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhh
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLE  323 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~  323 (412)
                      +||+.|+|||++.+ .++.++|||||||++|+|++|.+||.+.+..+.+..+......+     ...++++++||.+||+
T Consensus       189 ~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  267 (484)
T 3nyv_A          189 IGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLT  267 (484)
T ss_dssp             TTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTC
T ss_pred             CCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCC
Confidence            79999999999987 58999999999999999999999999999999888887765332     4578999999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      .||.+||    ++.++++||||+...+
T Consensus       268 ~dp~~R~----s~~e~l~h~~~~~~~~  290 (484)
T 3nyv_A          268 YVPSMRI----SARDALDHEWIQTYTK  290 (484)
T ss_dssp             SSGGGSC----CHHHHHTSHHHHHHTC
T ss_pred             CChhHCc----CHHHHhhChhhccccc
Confidence            9999999    7999999999986544

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=5.5e-51  Score=394.79  Aligned_cols=259  Identities=25%  Similarity=0.375  Sum_probs=209.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++++.||+|+||+||+|+++.++.    .||+|++.....   ......+.+|+.+++.++||||+++++++.+++
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   73 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSKLTDN----LVALKEIRLEHE---EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK   73 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS
T ss_pred             CCceEEEEEEcCCCCEEEEEEEECCCCc----EEEEEEEecccc---cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCC
Confidence            5799999999999999999999987554    499999965432   112223446999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+|||||.| +|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++...
T Consensus        74 ~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~  151 (324)
T 3mtl_A           74 SLTLVFEYLDK-DLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKS  151 (324)
T ss_dssp             CEEEEEECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-
T ss_pred             EEEEEeccccc-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCccccccc
Confidence            99999999975 777666553 3469999999999999999999999999999999999999999999999999997542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               .......+||+.|+|
T Consensus       152 ~~---------------------------------------------------------------~~~~~~~~~t~~y~a  168 (324)
T 3mtl_A          152 IP---------------------------------------------------------------TKTYDNEVVTLWYRP  168 (324)
T ss_dssp             --------------------------------------------------------------------------CGGGCC
T ss_pred             CC---------------------------------------------------------------ccccccccCcccccC
Confidence            11                                                               111224478999999


Q ss_pred             ceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC----------------------------
Q 042539          257 PEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP----------------------------  305 (412)
Q Consensus       257 PE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~----------------------------  305 (412)
                      ||++.+ ..++.++|||||||++|+|++|+.||.+.+..+....+...  .+                            
T Consensus       169 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (324)
T 3mtl_A          169 PDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALL  248 (324)
T ss_dssp             HHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHH
T ss_pred             hhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhh
Confidence            999987 56799999999999999999999999999888776665431  11                            


Q ss_pred             -CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 -EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 -~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                       ..+..++++.+||.+||+.||.+||    +++|+++||||.++...
T Consensus       249 ~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~hp~f~~~~~~  291 (324)
T 3mtl_A          249 SHAPRLDSDGADLLTKLLQFEGRNRI----SAEDAMKHPFFLSLGER  291 (324)
T ss_dssp             HHCTTSCHHHHHHHHHHSCSSGGGSC----CHHHHTTSGGGGGGCST
T ss_pred             hhcCCCCHHHHHHHHHHcCcCcccCC----CHHHHhcChhhhhcccc
Confidence             0124568899999999999999999    79999999999976643

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=9.6e-50  Score=387.83  Aligned_cols=261  Identities=28%  Similarity=0.479  Sum_probs=226.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|++++.||+|+||.||+|++..++.    .||+|++.+.... .......+.+|+.+++.++|+||+++++++.
T Consensus        37 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~~a~K~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  111 (335)
T 2owb_A           37 PRSRRRYVRGRFLGKGGFAKCFEISDADTKE----VFAGKIVPKSLLL-KPHQREKMSMEISIHRSLAHQHVVGFHGFFE  111 (335)
T ss_dssp             TTTTEEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEGGGCC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             cccCCceEEEEEEeeCCCeEEEEEEECCCCC----EEEEEEechhhhc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            3456799999999999999999999987544    4999999766542 2345567788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +++.+|+|||||.|++|..++....  .+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++
T Consensus       112 ~~~~~~lv~e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  189 (335)
T 2owb_A          112 DNDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT  189 (335)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             cCCeEEEEEecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCce
Confidence            9999999999999999988876554  49999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ....                                                               ........+||+.
T Consensus       190 ~~~~---------------------------------------------------------------~~~~~~~~~gt~~  206 (335)
T 2owb_A          190 KVEY---------------------------------------------------------------DGERKKVLCGTPN  206 (335)
T ss_dssp             ECCS---------------------------------------------------------------TTCCBCCCCSCCS
T ss_pred             eccc---------------------------------------------------------------CcccccccCCCcc
Confidence            5421                                                               1112234579999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+......++ ..++.+.+||.+||+.||++||  
T Consensus       207 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp--  284 (335)
T 2owb_A          207 YIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARP--  284 (335)
T ss_dssp             SCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSC--
T ss_pred             ccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHccCChhHCc--
Confidence            9999999999999999999999999999999999999888887777766554443 4678999999999999999999  


Q ss_pred             CCChhhhhcCCCCCCC
Q 042539          333 LRGACEIKEHVFFKGV  348 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~~  348 (412)
                        +++++++|+||...
T Consensus       285 --s~~ell~~~~~~~~  298 (335)
T 2owb_A          285 --TINELLNDEFFTSG  298 (335)
T ss_dssp             --CGGGGGGSHHHHTS
T ss_pred             --CHHHHhcCccccCC
Confidence              69999999999753

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=8.1e-50  Score=377.02  Aligned_cols=252  Identities=27%  Similarity=0.438  Sum_probs=220.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++.+.||+|+||+||+|.++.++.    .||+|++.+.....    ...+.+|+++++.++||||+++++++.+++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~~a~k~~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   79 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRI----RRAAKKIPKYFVED----VDRFKQEIEIMKSLDHPNIIRLYETFEDNT   79 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEGGGCSC----HHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCc----EEEEEeehhhccch----HHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            4689999999999999999999887544    49999997654322    345677999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE---ccCCCEEEccccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSR  173 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl---~~~g~vkL~DFGla~  173 (412)
                      .+|+|||||.|++|..++....  .+++.+++.++.|++.||+|||++||+||||||+|||+   +.++.+||+|||++.
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~  157 (277)
T 3f3z_A           80 DIYLVMELCTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA  157 (277)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             eEEEEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccce
Confidence            9999999999999988776654  49999999999999999999999999999999999999   788999999999987


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ....                                                                .......+||+.
T Consensus       158 ~~~~----------------------------------------------------------------~~~~~~~~~t~~  173 (277)
T 3f3z_A          158 RFKP----------------------------------------------------------------GKMMRTKVGTPY  173 (277)
T ss_dssp             ECCT----------------------------------------------------------------TSCBCCCCSCTT
T ss_pred             eccC----------------------------------------------------------------ccchhccCCCCC
Confidence            5421                                                                112234579999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-----CCChHHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-----GQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-----~~~~~~~dli~~~L~~dP~~  328 (412)
                      |+|||++.+. ++.++|||||||++|+|++|..||.+.+..+....+......++     ..++.+.+||.+||+.||.+
T Consensus       174 y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  252 (277)
T 3f3z_A          174 YVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQ  252 (277)
T ss_dssp             TCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTT
T ss_pred             ccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhh
Confidence            9999998765 89999999999999999999999999998888888877665443     57899999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||    ++.++++||||++
T Consensus       253 R~----s~~~~l~h~~~~~  267 (277)
T 3f3z_A          253 RI----TSLQALEHEWFEK  267 (277)
T ss_dssp             SC----CHHHHTTSHHHHH
T ss_pred             Cc----CHHHHhcCHHHhc
Confidence            99    6999999999974

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=4.2e-50  Score=411.64  Aligned_cols=259  Identities=27%  Similarity=0.420  Sum_probs=219.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh---------HHHHHHHHHHHHHHhhcCCCccc
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK---------HEAERRARWEIRVLSRLSHPFLP   86 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~---------~~~~~~~~~Ei~il~~l~hpnIv   86 (412)
                      ..++|+++++||+|+||+||+|+++.++.    .||||++.+......         ......+.+|+.++++++||||+
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv  109 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHS----EKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNII  109 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCC----EEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBC
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCc----EEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence            35789999999999999999999987554    499999987653211         12345678899999999999999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC---C
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---H  163 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g---~  163 (412)
                      ++++++.++..+|+|||||.||+|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++   .
T Consensus       110 ~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~  187 (504)
T 3q5i_A          110 KLFDVFEDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLN  187 (504)
T ss_dssp             CEEEEEECSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSS
T ss_pred             eEEEEEEcCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCcc
Confidence            99999999999999999999999988776654  499999999999999999999999999999999999999876   6


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+|+....                                                                ..
T Consensus       188 ~kl~Dfg~a~~~~~----------------------------------------------------------------~~  203 (504)
T 3q5i_A          188 IKIVDFGLSSFFSK----------------------------------------------------------------DY  203 (504)
T ss_dssp             EEECCCTTCEECCT----------------------------------------------------------------TS
T ss_pred             EEEEECCCCEEcCC----------------------------------------------------------------CC
Confidence            99999999975421                                                                11


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHH
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLI  318 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli  318 (412)
                      .....+||+.|+|||++.+ .++.++|||||||++|+|++|.+||.+.+..+.+..+......+     ...++++++||
T Consensus       204 ~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  282 (504)
T 3q5i_A          204 KLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELI  282 (504)
T ss_dssp             CBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHH
T ss_pred             ccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHH
Confidence            2234579999999999875 58999999999999999999999999999999988888765443     46789999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      .+||+.||.+||    +++++++||||+...
T Consensus       283 ~~~L~~dp~~R~----t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          283 KLMLTYDYNKRC----TAEEALNSRWIKKYA  309 (504)
T ss_dssp             HHHTCSSTTTSC----CHHHHHTSHHHHHTC
T ss_pred             HHHcCCChhHCC----CHHHHhcCHhhhhch
Confidence            999999999999    799999999997643

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.7e-50  Score=399.29  Aligned_cols=252  Identities=29%  Similarity=0.475  Sum_probs=213.1

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEe
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      .+.||+|+||.||+|++..++.    .||+|+++....    .....+.+|++++++++||||+++++++.+.+.+|+||
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~----~vavK~~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~  165 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGL----KLAAKIIKTRGM----KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVM  165 (373)
T ss_dssp             EEECC-----CEEEEEETTTCC----EEEEEEEECCSH----HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCc----EEEEEEEccccc----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence            6789999999999999887554    499999976543    23456778999999999999999999999999999999


Q ss_pred             eccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE--ccCCCEEEccccccchhhchhh
Q 042539          103 PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       103 e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl--~~~g~vkL~DFGla~~~~~~~~  180 (412)
                      |||.|++|..++.... ..+++..++.++.||+.||.|||++||+||||||+|||+  +.++.+||+|||+++.+..   
T Consensus       166 E~~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~---  241 (373)
T 2x4f_A          166 EYVDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKP---  241 (373)
T ss_dssp             ECCTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCT---
T ss_pred             eCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCC---
Confidence            9999999987775432 358999999999999999999999999999999999999  5667899999999975421   


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                                                                                   .......+||+.|+|||++
T Consensus       242 -------------------------------------------------------------~~~~~~~~gt~~y~aPE~~  260 (373)
T 2x4f_A          242 -------------------------------------------------------------REKLKVNFGTPEFLAPEVV  260 (373)
T ss_dssp             -------------------------------------------------------------TCBCCCCCSSCTTCCHHHH
T ss_pred             -------------------------------------------------------------ccccccccCCCcEeChhhc
Confidence                                                                         1122345799999999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCCccCCCCCC
Q 042539          261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPVKRLGYLRG  335 (412)
Q Consensus       261 ~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~~R~~~~~~  335 (412)
                      .+..++.++|||||||++|+|++|..||.+.+..+.+.++......+     ...++++.+||.+||+.||.+||    +
T Consensus       261 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rp----s  336 (373)
T 2x4f_A          261 NYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRI----S  336 (373)
T ss_dssp             TTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSC----C
T ss_pred             cCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCC----C
Confidence            98889999999999999999999999999999988888887654332     45789999999999999999999    6


Q ss_pred             hhhhhcCCCCCCCCch
Q 042539          336 ACEIKEHVFFKGVRWD  351 (412)
Q Consensus       336 ~~e~l~h~ff~~~~~~  351 (412)
                      ++++++||||++..+.
T Consensus       337 ~~e~l~hp~~~~~~~~  352 (373)
T 2x4f_A          337 ASEALKHPWLSDHKLH  352 (373)
T ss_dssp             HHHHHHSHHHHCHHHH
T ss_pred             HHHHhcCcCcCCCchh
Confidence            9999999999987654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.3e-50  Score=411.40  Aligned_cols=255  Identities=27%  Similarity=0.449  Sum_probs=215.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||+|++.+......  ....+.+|+.+++.++|||||++++++.+...
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  110 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHV----ERAIKIIRKTSVSTS--SNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRN  110 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCC----EEEEEEEEC-----C--TTHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCc----EEEEEEEeccccCch--HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE
Confidence            479999999999999999999987554    499999987653222  24567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC---CCEEEccccccch
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS---GHVTLTDFDLSRN  174 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~---g~vkL~DFGla~~  174 (412)
                      +|+|||||.||+|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++..   +.+||+|||+|+.
T Consensus       111 ~~lv~e~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~  188 (494)
T 3lij_A          111 YYLVMECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAV  188 (494)
T ss_dssp             EEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence            999999999999987776654  49999999999999999999999999999999999999764   4599999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ...                                                                .......+||+.|
T Consensus       189 ~~~----------------------------------------------------------------~~~~~~~~gt~~y  204 (494)
T 3lij_A          189 FEN----------------------------------------------------------------QKKMKERLGTAYY  204 (494)
T ss_dssp             CBT----------------------------------------------------------------TBCBCCCCSCTTT
T ss_pred             CCC----------------------------------------------------------------CccccccCCCcCe
Confidence            421                                                                1122355799999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----CCCCChHHHHHHHHhhhhCCCcc
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----FVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +|||++.+ .++.++|||||||++|+|++|.+||.+.+..+.+..+......     +...++.+++||.+||+.||.+|
T Consensus       205 ~aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R  283 (494)
T 3lij_A          205 IAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRR  283 (494)
T ss_dssp             CCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             eCHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhC
Confidence            99999864 5899999999999999999999999999999988888765543     34678999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~~  349 (412)
                      |    ++.++++||||+...
T Consensus       284 ~----s~~e~l~hp~~~~~~  299 (494)
T 3lij_A          284 I----SAQQALEHPWIKEMC  299 (494)
T ss_dssp             C----CHHHHHTCHHHHHHH
T ss_pred             c----cHHHHhcCcccccCc
Confidence            9    699999999998643

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.2e-49  Score=377.49  Aligned_cols=262  Identities=28%  Similarity=0.476  Sum_probs=227.0

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .....++|++++.||+|+||+||+|++..++.    .||+|++.+.... .......+.+|+.+++.++|+||+++++++
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~~a~K~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   84 (294)
T 2rku_A           10 DPRSRRRYVRGRFLGKGGFAKCFEISDADTKE----VFAGKIVPKSLLL-KPHQREKMSMEISIHRSLAHQHVVGFHGFF   84 (294)
T ss_dssp             ETTTTEEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEGGGCC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             CCCcccceEEEEEEeecCCEEEEEEEECCCCc----eEEEEEechhhcc-CHHHHHHHHHHHHHHHhCCCCCEeeeeeee
Confidence            34667899999999999999999999987554    4999999766542 234456778899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+++.+|+||||+.|++|..++....  .+++.++..++.|++.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  162 (294)
T 2rku_A           85 EDNDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA  162 (294)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ccCCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCc
Confidence            99999999999999999988776554  4999999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....                                                               ........+||+
T Consensus       163 ~~~~~---------------------------------------------------------------~~~~~~~~~~~~  179 (294)
T 2rku_A          163 TKVEY---------------------------------------------------------------DGERKKVLCGTP  179 (294)
T ss_dssp             EECCS---------------------------------------------------------------TTCCBCCCCSCC
T ss_pred             eeccc---------------------------------------------------------------CccccccccCCC
Confidence            75421                                                               111223457999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      .|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..+....... ...++.+.+||.+||+.||++|| 
T Consensus       180 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  258 (294)
T 2rku_A          180 NYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARP-  258 (294)
T ss_dssp             SSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSC-
T ss_pred             CcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCccccCHHHHHHHHHHcccChhhCc-
Confidence            9999999999889999999999999999999999999998888877777655444 34678999999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCC
Q 042539          332 YLRGACEIKEHVFFKGV  348 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~  348 (412)
                         +++++++|+||...
T Consensus       259 ---s~~~ll~~~~~~~~  272 (294)
T 2rku_A          259 ---TINELLNDEFFTSG  272 (294)
T ss_dssp             ---CGGGGGGSHHHHTS
T ss_pred             ---CHHHHhhChheecC
Confidence               69999999999753

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=5.2e-50  Score=385.47  Aligned_cols=266  Identities=27%  Similarity=0.409  Sum_probs=209.7

Q ss_pred             CccCceee-eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEE
Q 042539           16 DLDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLE   93 (412)
Q Consensus        16 ~~~~y~~~-~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~   93 (412)
                      ..++|++. +.||+|+||+||+|++..++    +.||||++.+...    .....+.+|++++.++ +||||+++++++.
T Consensus        10 ~~~~y~i~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~----~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~   81 (316)
T 2ac3_A           10 FEDVYQLQEDVLGEGAHARVQTCINLITS----QEYAVKIIEKQPG----HIRSRVFREVEMLYQCQGHRNVLELIEFFE   81 (316)
T ss_dssp             TTTSCEECCCCCCCCSSEEEEEEECSSSC----CEEEEEEEECCSS----CCHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             cceeEEecCceecCCceEEEEEEEEcCCC----cEEEEEEEeeCcc----hhHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            45789996 78999999999999987654    4499999976532    2244567799999995 6999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC---EEEcccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFD  170 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~---vkL~DFG  170 (412)
                      +++.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.++.   +||+|||
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg  159 (316)
T 2ac3_A           82 EEDRFYLVFEKMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFD  159 (316)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTT
T ss_pred             eCCEEEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEcc
Confidence            9999999999999999998887654  4999999999999999999999999999999999999998876   9999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++..........                                                        .........+|
T Consensus       160 ~~~~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~g  183 (316)
T 2ac3_A          160 LGSGIKLNGDCSP--------------------------------------------------------ISTPELLTPCG  183 (316)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             CccccccCCcccc--------------------------------------------------------ccccccccccC
Confidence            9976532110000                                                        01112234579


Q ss_pred             CCCCccceeecC-----CCCCchhhHHHHHHHHHHHhhCCCCCCCCC---------------HHHHHHHHhcCCCCCC--
Q 042539          251 TEEYVSPEVVRG-----DGHEFAVDWWALGILTYEMLYGTTPFRGKN---------------RKETFRNVLMKTPEFV--  308 (412)
Q Consensus       251 t~~Y~APE~l~~-----~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---------------~~~~~~~i~~~~~~~~--  308 (412)
                      |+.|+|||++.+     ..++.++|||||||++|+|++|+.||.+.+               ....+..+......++  
T Consensus       184 t~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (316)
T 2ac3_A          184 SAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDK  263 (316)
T ss_dssp             SGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHH
T ss_pred             CcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCch
Confidence            999999999975     457889999999999999999999998754               2345555555544443  


Q ss_pred             ---CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          309 ---GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       309 ---~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                         ..++++.+||.+||..||.+||    +++++++||||++..+.
T Consensus       264 ~~~~~~~~~~~li~~~L~~dP~~Rp----s~~e~l~hp~~~~~~~~  305 (316)
T 2ac3_A          264 DWAHISCAAKDLISKLLVRDAKQRL----SAAQVLQHPWVQGCAPE  305 (316)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSTTTSC----CHHHHHHSTTCC-----
T ss_pred             hcccCCHHHHHHHHHHhhCChhhCC----CHHHHhcChhhcCCCCc
Confidence               5688999999999999999999    69999999999987654

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.9e-49  Score=378.27  Aligned_cols=268  Identities=27%  Similarity=0.425  Sum_probs=224.0

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh-----hhhHHHHHHHHHHHHHHhhcC-CCccc
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL-----HAKHEAERRARWEIRVLSRLS-HPFLP   86 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~-----~~~~~~~~~~~~Ei~il~~l~-hpnIv   86 (412)
                      ..-..++|++++.||+|+||.||+|+++.++    +.||||+++....     .........+.+|+.+++++. ||||+
T Consensus        12 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~   87 (298)
T 1phk_A           12 THGFYENYEPKEILGRGVSSVVRRCIHKPTC----KEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNII   87 (298)
T ss_dssp             ---CTTTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBC
T ss_pred             CcchhhccceeeeecCCCceEEEEEEEcCcC----ceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEe
Confidence            3456799999999999999999999997754    4499999975431     112334567788999999996 99999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ++++++.+++.+|+||||+.|++|..++....  .+++..+..++.||+.||.|||++||+||||||+||+++.+|.+||
T Consensus        88 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl  165 (298)
T 1phk_A           88 QLKDTYETNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKL  165 (298)
T ss_dssp             CEEEEEECSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEE
T ss_pred             eeeeeeccCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEE
Confidence            99999999999999999999999998887654  4999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||++.....                                                                .....
T Consensus       166 ~dfg~~~~~~~----------------------------------------------------------------~~~~~  181 (298)
T 1phk_A          166 TDFGFSCQLDP----------------------------------------------------------------GEKLR  181 (298)
T ss_dssp             CCCTTCEECCT----------------------------------------------------------------TCCBC
T ss_pred             ecccchhhcCC----------------------------------------------------------------Ccccc
Confidence            99999875421                                                                11223


Q ss_pred             ccccCCCCccceeec------CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHH
Q 042539          247 SFVGTEEYVSPEVVR------GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALT  315 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~------~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~  315 (412)
                      ..+||+.|+|||++.      ...++.++|||||||++|+|++|..||.+.+.......+......+     ...+..+.
T Consensus       182 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (298)
T 1phk_A          182 EVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVK  261 (298)
T ss_dssp             CCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHH
T ss_pred             cccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHH
Confidence            457899999999985      4467899999999999999999999999988888877777654333     34678999


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhc
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLT  354 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~  354 (412)
                      +||.+||..||.+||    +++++++||||++..++.+.
T Consensus       262 ~li~~~l~~dp~~Rp----s~~~ll~h~~~~~~~~~~~~  296 (298)
T 1phk_A          262 DLVSRFLVVQPQKRY----TAEEALAHPFFQQYVVEEVR  296 (298)
T ss_dssp             HHHHHHCCSSGGGSC----CHHHHTTSGGGCTTC-----
T ss_pred             HHHHHHccCCcccCC----CHHHHHhChHhhhccchhhc
Confidence            999999999999999    69999999999988876543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.9e-50  Score=392.33  Aligned_cols=267  Identities=27%  Similarity=0.414  Sum_probs=212.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh-hHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA-KHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ....++|++++.||+|+||+||+|++..++    +.||||++....... .......+.+|+++++.++||||+++++++
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   81 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKNTN----QIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF   81 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSSCC----SEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECCCC----cEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEE
Confidence            345689999999999999999999987754    449999997654321 122234677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+.+.+|+|||||.| +|..++.. ....+++.+++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        82 ~~~~~~~lv~e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a  159 (346)
T 1ua2_A           82 GHKSNISLVFDFMET-DLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLA  159 (346)
T ss_dssp             CCTTCCEEEEECCSE-EHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGG
T ss_pred             eeCCceEEEEEcCCC-CHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccc
Confidence            999999999999986 67666544 3346899999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+..                                                               ........+||+
T Consensus       160 ~~~~~---------------------------------------------------------------~~~~~~~~~~t~  176 (346)
T 1ua2_A          160 KSFGS---------------------------------------------------------------PNRAYTHQVVTR  176 (346)
T ss_dssp             STTTS---------------------------------------------------------------CCCCCCCSCCCC
T ss_pred             eeccC---------------------------------------------------------------CcccCCcccccc
Confidence            75421                                                               111223457999


Q ss_pred             CCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC---C--------------------
Q 042539          253 EYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP---E--------------------  306 (412)
Q Consensus       253 ~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~---~--------------------  306 (412)
                      .|+|||++.+. .++.++|||||||++|+|++|.+||.+.+..+.+.++...  .+   .                    
T Consensus       177 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (346)
T 1ua2_A          177 WYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIP  256 (346)
T ss_dssp             TTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCC
T ss_pred             cccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCC
Confidence            99999999765 4799999999999999999999999999988877776531  10   0                    


Q ss_pred             ----CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          307 ----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       307 ----~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                          +...++++.+||.+||..||++||    +++|+++||||++..+...
T Consensus       257 ~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~h~~f~~~~~~~~  303 (346)
T 1ua2_A          257 LHHIFSAAGDDLLDLIQGLFLFNPCARI----TATQALKMKYFSNRPGPTP  303 (346)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHCSSTTTSC----CHHHHHTSGGGTSSSCCCC
T ss_pred             hHHhhccCCHHHHHHHHHHhccChhhCC----CHHHHhcChhhhcCCCCCC
Confidence                123468899999999999999999    7999999999998766544

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=3e-50  Score=396.73  Aligned_cols=255  Identities=25%  Similarity=0.420  Sum_probs=200.8

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC--
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD--   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--   95 (412)
                      ++|++++.||+|+||.||+|.+..++    +.||||++.+...  .....+++.+|+.+++.++||||+++++++...  
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~----~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  102 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTG----LRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARS  102 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTT----EEEEEEECSSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSS
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCC----CEEEEEEeCcccc--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCc
Confidence            79999999999999999999987754    4599999966432  234456778899999999999999999999754  


Q ss_pred             ----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           96 ----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        96 ----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                          ..+|+|||++ |++|..++..   ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus       103 ~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~  178 (367)
T 2fst_X          103 LEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL  178 (367)
T ss_dssp             GGGCCCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC---
T ss_pred             cccCCeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccc
Confidence                5689999999 7899877654   3599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++....                                                                  .....+||
T Consensus       179 a~~~~~------------------------------------------------------------------~~~~~~~t  192 (367)
T 2fst_X          179 ARHTAD------------------------------------------------------------------EMTGYVAT  192 (367)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             cccccc------------------------------------------------------------------cCCCcCcC
Confidence            975321                                                                  11245799


Q ss_pred             CCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC---------------------C-
Q 042539          252 EEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP---------------------E-  306 (412)
Q Consensus       252 ~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~---------------------~-  306 (412)
                      +.|+|||++.+ ..++.++|||||||++|+|++|++||.+.+..+.+..+...  .+                     . 
T Consensus       193 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~  272 (367)
T 2fst_X          193 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM  272 (367)
T ss_dssp             CTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCC
T ss_pred             cCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCC
Confidence            99999999987 67899999999999999999999999999887776665431  00                     0 


Q ss_pred             --------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchh
Q 042539          307 --------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       307 --------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                              ++..++.+.+||.+||+.||.+|+    +++++++||||+......
T Consensus       273 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~----t~~e~L~hp~~~~~~~~~  322 (367)
T 2fst_X          273 PKMNFANVFIGANPLAVDLLEKMLVLDSDKRI----TAAQALAHAYFAQYHDPD  322 (367)
T ss_dssp             CCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGTTTCCGG
T ss_pred             CCCCHHHHCCCCCHHHHHHHHHhCCCCcccCc----CHHHHhcChhhhhccCCC
Confidence                    134578899999999999999999    799999999999876544

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.7e-50  Score=379.54  Aligned_cols=260  Identities=27%  Similarity=0.505  Sum_probs=196.6

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++++.||+|+||.||+|++..++    +.||||++.+..... ......+.+|+.+++.++||||+++++++.+.
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   83 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTG----LEVAIKMIDKKAMYK-AGMVQRVQNEVKIHCQLKHPSILELYNYFEDS   83 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTC----CEEEEEEEEHHHHHH-TTCHHHHHHHHHHHTTBCCTTBCCEEEEEECS
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCC----ceEEEEEeehhhhhh-hhHHHHHHHHHHHHHhCCCCCeEeEEEEEccC
Confidence            5689999999999999999999987654    449999997654322 22346678899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+||||+.|++|..++... ...+++.+++.++.|++.||.|||++||+||||||+||+++.+|.+||+|||++...
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~  162 (278)
T 3cok_A           84 NYVYLVLEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQL  162 (278)
T ss_dssp             SEEEEEEECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CeEEEEEecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeec
Confidence            9999999999999998887653 245999999999999999999999999999999999999999999999999998754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                               .......+||+.|+
T Consensus       163 ~~~---------------------------------------------------------------~~~~~~~~~~~~y~  179 (278)
T 3cok_A          163 KMP---------------------------------------------------------------HEKHYTLCGTPNYI  179 (278)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCC---------------------------------------------------------------CCcceeccCCCCcC
Confidence            211                                                               01122457899999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      |||++.+..++.++|||||||++|+|++|+.||...+.......+.......+ ..+.++.+||.+||..||.+||    
T Consensus       180 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp----  255 (278)
T 3cok_A          180 SPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRL----  255 (278)
T ss_dssp             ------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSC----
T ss_pred             CcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCccccCHHHHHHHHHHcccCHhhCC----
Confidence            99999998899999999999999999999999988765555555544333333 4678999999999999999999    


Q ss_pred             ChhhhhcCCCCCCC
Q 042539          335 GACEIKEHVFFKGV  348 (412)
Q Consensus       335 ~~~e~l~h~ff~~~  348 (412)
                      +++++++||||.+.
T Consensus       256 s~~~~l~h~~~~~~  269 (278)
T 3cok_A          256 SLSSVLDHPFMSRN  269 (278)
T ss_dssp             CHHHHTTSTTTC--
T ss_pred             CHHHHhcCccccCC
Confidence            69999999999864

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-50  Score=387.14  Aligned_cols=255  Identities=23%  Similarity=0.322  Sum_probs=204.7

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~   91 (412)
                      .++..++|+++++||+|+||+||+|+++.++.    .||||++......  ........+|+..+..+ +|+||++++++
T Consensus        52 ~~~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~----~vavK~~~~~~~~--~~~~~~~~~e~~~~~~~~~h~~iv~l~~~  125 (311)
T 3p1a_A           52 ESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGR----LYAVKRSMSPFRG--PKDRARKLAEVGSHEKVGQHPCCVRLEQA  125 (311)
T ss_dssp             SCHHHHHEEEEEEEEEETTEEEEEEEETTTSC----EEEEEEESSSCCS--HHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cchhhhheeeeheeccCCCeEEEEEEECCCCe----EEEEEEecccccC--hHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            34445889999999999999999999987544    4999998654322  22233444466666655 89999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+||||| +++|..++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus       126 ~~~~~~~~lv~e~~-~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~  203 (311)
T 3p1a_A          126 WEEGGILYLQTELC-GPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGL  203 (311)
T ss_dssp             EEETTEEEEEEECC-CCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTT
T ss_pred             EEeCCEEEEEEecc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEcccee
Confidence            99999999999999 668877766543 4599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++....                                                                .......+||
T Consensus       204 a~~~~~----------------------------------------------------------------~~~~~~~~gt  219 (311)
T 3p1a_A          204 LVELGT----------------------------------------------------------------AGAGEVQEGD  219 (311)
T ss_dssp             CEECC----------------------------------------------------------------------CCCCC
T ss_pred             eeeccc----------------------------------------------------------------CCCCcccCCC
Confidence            875421                                                                1112345699


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---CCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP---EFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+ .++.++|||||||++|||++|..||.+...   ...+.....   .....++++.+||.+||+.||++
T Consensus       220 ~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  295 (311)
T 3p1a_A          220 PRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG---WQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKL  295 (311)
T ss_dssp             GGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHH---HHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTT
T ss_pred             ccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccH---HHHHhccCCCcccccCCCHHHHHHHHHHcCCChhh
Confidence            99999999987 689999999999999999999777765332   223322221   12356889999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||    +++++++||||+.
T Consensus       296 Rp----t~~ell~hp~~~~  310 (311)
T 3p1a_A          296 RA----TAEALLALPVLRQ  310 (311)
T ss_dssp             SC----CHHHHHTSGGGSC
T ss_pred             Cc----CHHHHHhCccccC
Confidence            99    7999999999974

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3.8e-50  Score=389.78  Aligned_cols=265  Identities=29%  Similarity=0.413  Sum_probs=219.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...-.+++|++++.||+|+||.||+|++..++.    .||||++.....  .......+.+|+.+++.++||||++++++
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   92 (331)
T 4aaa_A           19 LYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGR----IVAIKKFLESDD--DKMVKKIAMREIKLLKQLRHENLVNLLEV   92 (331)
T ss_dssp             CCCBCGGGEEEEEEGGGGTTSSEEEEEETTTCC----EEEEEEEESCSS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hhhhhhhhheeeeEEeecCCEEEEEEEECCCCc----eEEEEEEecCCC--chHHHHHHHHHHHHHhhCCCCCEeeEEEE
Confidence            445578999999999999999999999987554    499999866542  33455667789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+.+.+|+||||+.|++|..+....  ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        93 ~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  170 (331)
T 4aaa_A           93 CKKKKRWYLVFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGF  170 (331)
T ss_dssp             EEETTEEEEEEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             eecCCEEEEEEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCC
Confidence            99999999999999999987765443  3599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.+...                                                               .......+||
T Consensus       171 ~~~~~~~---------------------------------------------------------------~~~~~~~~~t  187 (331)
T 4aaa_A          171 ARTLAAP---------------------------------------------------------------GEVYDDEVAT  187 (331)
T ss_dssp             C---------------------------------------------------------------------------CCCC
T ss_pred             ceeecCC---------------------------------------------------------------ccccCCCcCC
Confidence            9754211                                                               1112345789


Q ss_pred             CCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC----------------------C---
Q 042539          252 EEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT----------------------P---  305 (412)
Q Consensus       252 ~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~----------------------~---  305 (412)
                      +.|+|||++.+. .++.++|||||||++|+|++|++||.+.+..+....+....                      +   
T Consensus       188 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (331)
T 4aaa_A          188 RWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIK  267 (331)
T ss_dssp             CTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCS
T ss_pred             ccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCcccc
Confidence            999999999876 67999999999999999999999999988777665554210                      0   


Q ss_pred             -------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 -------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 -------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                             .++..++.+.+||.+||+.||.+||    +++|+++||||+...+.
T Consensus       268 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp----t~~ell~hp~f~~~~~~  316 (331)
T 4aaa_A          268 EREPLERRYPKLSEVVIDLAKKCLHIDPDKRP----FCAELLHHDFFQMDGFA  316 (331)
T ss_dssp             SCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSC----CGGGGGGSHHHHGGGHH
T ss_pred             ccchhhhcccchhHHHHHHHHHHhccCcccCC----CHHHHhcCchhccCChh
Confidence                   0135678999999999999999999    69999999999876553

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=9.1e-50  Score=381.67  Aligned_cols=264  Identities=25%  Similarity=0.451  Sum_probs=220.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE--e
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE--T   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~--~   94 (412)
                      +++|++++.||+|+||.||+|.+..++    +.||+|++++............+.+|+++++.++||||+++++++.  +
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~----~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   79 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETL----CRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEE   79 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTC----CEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCC----cEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCC
Confidence            579999999999999999999987654    4499999987654333345667888999999999999999999984  4


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ...+|+|||||.++ |..++.......+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||++..
T Consensus        80 ~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~  158 (305)
T 2wtk_C           80 KQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEA  158 (305)
T ss_dssp             --CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence            56899999999887 55566655556799999999999999999999999999999999999999999999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ....                                                             ..........||+.|
T Consensus       159 ~~~~-------------------------------------------------------------~~~~~~~~~~~~~~y  177 (305)
T 2wtk_C          159 LHPF-------------------------------------------------------------AADDTCRTSQGSPAF  177 (305)
T ss_dssp             CCTT-------------------------------------------------------------CSSCEECCCCSCGGG
T ss_pred             cCcc-------------------------------------------------------------ccccccccCCCCCCC
Confidence            4210                                                             011122345699999


Q ss_pred             ccceeecCCCC--CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGH--EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~--~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||++.+...  +.++|||||||++|+|++|..||.+.+..+....+......++ ..++.+.+||.+||..||.+|| 
T Consensus       178 ~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-  256 (305)
T 2wtk_C          178 QPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRF-  256 (305)
T ss_dssp             CCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSC-
T ss_pred             cChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCCccCHHHHHHHHHHccCChhhCC-
Confidence            99999987543  7899999999999999999999999998888888776654443 5678999999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCCCc
Q 042539          332 YLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~~~  350 (412)
                         +++++++||||++...
T Consensus       257 ---s~~~ll~~~~~~~~~~  272 (305)
T 2wtk_C          257 ---SIRQIRQHSWFRKKHP  272 (305)
T ss_dssp             ---CHHHHHHSHHHHSCCC
T ss_pred             ---CHHHHhcCcccccCCC
Confidence               6999999999987554

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.1e-50  Score=391.84  Aligned_cols=268  Identities=23%  Similarity=0.395  Sum_probs=206.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|++++.||+|+||+||+|+++.++.    .||||+++...   .....+.+.+|++++++++||||++++++|.+..
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~----~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   77 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDC----NYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLETP   77 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCC----EEEEEEEECCS---TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECC
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCc----EEEEEEeecCC---chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEec
Confidence            5789999999999999999999987554    49999997543   2234566788999999999999999999986543


Q ss_pred             ---------------------------------------------------------eEEEEeeccCCCCchhHHHhhCC
Q 042539           97 ---------------------------------------------------------FLAWAVPYCPGGDLNVLRYKQND  119 (412)
Q Consensus        97 ---------------------------------------------------------~~~lv~e~~~gg~L~~~~~~~~~  119 (412)
                                                                               .+|+|||||.||+|..++.....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~  157 (332)
T 3qd2_B           78 PEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS  157 (332)
T ss_dssp             SCHHHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS
T ss_pred             cchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC
Confidence                                                                     38999999999999988765432


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCC
Q 042539          120 -RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTE  198 (412)
Q Consensus       120 -~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (412)
                       ...++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++............             
T Consensus       158 ~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~-------------  224 (332)
T 3qd2_B          158 LEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL-------------  224 (332)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------------
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccc-------------
Confidence             124556789999999999999999999999999999999999999999999998663221100000             


Q ss_pred             CcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHH
Q 042539          199 NPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILT  278 (412)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil  278 (412)
                                                            ............+||+.|+|||++.+..++.++|||||||++
T Consensus       225 --------------------------------------~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  266 (332)
T 3qd2_B          225 --------------------------------------TPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLIL  266 (332)
T ss_dssp             ---------------------------------------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHH
T ss_pred             --------------------------------------ccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHH
Confidence                                                  000011223456899999999999999999999999999999


Q ss_pred             HHHhhCCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          279 YEMLYGTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       279 ~ell~g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      |+|++|..|+..  .......+......  ....++++.+||.+||+.||.+||    +++++++||||+++
T Consensus       267 ~el~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----s~~~~l~~~~f~~~  332 (332)
T 3qd2_B          267 FELLYSFSTQME--RVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERP----EATDIIENAIFENL  332 (332)
T ss_dssp             HHHHSCCCCHHH--HHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSC----CHHHHHHSTTCCCC
T ss_pred             HHHHHcCCChhH--HHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCC----CHHHHhhchhhhcC
Confidence            999999877632  12222333222211  123457889999999999999999    69999999999864

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=2.1e-49  Score=383.41  Aligned_cols=253  Identities=25%  Similarity=0.394  Sum_probs=217.4

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|...+.||+|+||+||+|+++.++.    .||||++......    ....+.+|+.+++.++||||+++++++...+.+
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~----~vavK~~~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  117 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGR----QVAVKMMDLRKQQ----RRELLFNEVVIMRDYQHFNVVEMYKSYLVGEEL  117 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEETTTCC----SHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEE
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCc----EEEEEEEeccchh----HHHHHHHHHHHHHhCCCCCcceEEEEEEECCEE
Confidence            47888999999999999999876544    4999999754322    234566799999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+||||+.|++|..++..   ..+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+|||+++.... 
T Consensus       118 ~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~-  193 (321)
T 2c30_A          118 WVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK-  193 (321)
T ss_dssp             EEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS-
T ss_pred             EEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeeccc-
Confidence            999999999999887653   3499999999999999999999999999999999999999999999999999875421 


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                    ........+||+.|+|||
T Consensus       194 --------------------------------------------------------------~~~~~~~~~gt~~y~aPE  211 (321)
T 2c30_A          194 --------------------------------------------------------------DVPKRKSLVGTPYWMAPE  211 (321)
T ss_dssp             --------------------------------------------------------------SSCCBCCCCSCGGGCCHH
T ss_pred             --------------------------------------------------------------CccccccccCCccccCHh
Confidence                                                                          111123567999999999


Q ss_pred             eecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC----CCCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          259 VVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       259 ~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~----~~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ++.+..++.++|||||||++|+|++|+.||.+.+..+....+....+..    ...++.+.+||.+||..||++||    
T Consensus       212 ~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  287 (321)
T 2c30_A          212 VISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERA----  287 (321)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSC----
T ss_pred             hhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCc----
Confidence            9999999999999999999999999999999988888777776544322    24578999999999999999999    


Q ss_pred             ChhhhhcCCCCCCCC
Q 042539          335 GACEIKEHVFFKGVR  349 (412)
Q Consensus       335 ~~~e~l~h~ff~~~~  349 (412)
                      +++++++||||....
T Consensus       288 s~~ell~hp~~~~~~  302 (321)
T 2c30_A          288 TAQELLDHPFLLQTG  302 (321)
T ss_dssp             CHHHHHTSGGGGGCC
T ss_pred             CHHHHhcChhhccCC
Confidence            699999999997543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=3.3e-50  Score=393.16  Aligned_cols=263  Identities=24%  Similarity=0.340  Sum_probs=212.9

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      .+++|++++.||+|+||+||+|+++.++.    .||||++.......  .....+.+|+.+++.++||||+++++++.+ 
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   88 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQ----KVALKKVLMENEKE--GFPITALREIKILQLLKHENVVNLIEICRTK   88 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEETTTCC----EEEEEECCCSSCSS--SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC
T ss_pred             cccceeEEEEEecCCCcEEEEEEECCCCC----EEEEEEEecccccc--cchHHHHHHHHHHHhccCCCcccHhheeecc
Confidence            57899999999999999999999987554    49999996654321  223455679999999999999999999987 


Q ss_pred             -------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           95 -------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        95 -------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                             ++.+|+|||||.| +|...+... ...+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+
T Consensus        89 ~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~  166 (351)
T 3mi9_A           89 ASPYNRCKGSIYLVFDFCEH-DLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLA  166 (351)
T ss_dssp             --------CEEEEEEECCSE-EHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEEC
T ss_pred             ccccccCCceEEEEEeccCC-CHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEc
Confidence                   4579999999976 555454433 2459999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+|+.+.....                                                           ........
T Consensus       167 Dfg~a~~~~~~~~-----------------------------------------------------------~~~~~~~~  187 (351)
T 3mi9_A          167 DFGLARAFSLAKN-----------------------------------------------------------SQPNRYTN  187 (351)
T ss_dssp             CCTTCEECCCCSS-----------------------------------------------------------SSCCCCCS
T ss_pred             cchhccccccccc-----------------------------------------------------------ccccccCC
Confidence            9999976521100                                                           11122345


Q ss_pred             cccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC---CC--CCCC------------
Q 042539          248 FVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK---TP--EFVG------------  309 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~---~~--~~~~------------  309 (412)
                      .+||+.|+|||++.+. .++.++|||||||++|+|++|.+||.+.+.......+...   .+  .++.            
T Consensus       188 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (351)
T 3mi9_A          188 RVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLEL  267 (351)
T ss_dssp             SCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCC
T ss_pred             cccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhccccc
Confidence            6799999999999874 5799999999999999999999999999888776665431   11  0111            


Q ss_pred             ----------------CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          310 ----------------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       310 ----------------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                                      .++.+.+||.+||+.||++||    +++|+++||||....
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~hp~f~~~~  319 (351)
T 3mi9_A          268 VKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRI----DSDDALNHDFFWSDP  319 (351)
T ss_dssp             CSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGGSSS
T ss_pred             ccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCC----CHHHHhCCCCcCCCC
Confidence                            156799999999999999999    799999999998643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.4e-49  Score=374.90  Aligned_cols=261  Identities=25%  Similarity=0.420  Sum_probs=216.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||.||+|+++.++    +.||||++....... ......+.+|+.+++.++||||++++++
T Consensus         5 ~g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~   79 (276)
T 2h6d_A            5 DGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTG----HKVAVKILNRQKIRS-LDVVGKIKREIQNLKLFRHPHIIKLYQV   79 (276)
T ss_dssp             --CCEETTEEEEEEEEECSSEEEEEEEETTTC----CEEEEEEEEHHHHHH-TTCHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             cCcceeccEEEEeeecCCCCeEEEEEEECCCC----ceEEEEEeccccccc-hhHHHHHHHHHHHHhcCCCCCEeEEEEE
Confidence            45678899999999999999999999987654    449999997654322 2334567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+.+.+|+||||+.|++|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        80 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~  157 (276)
T 2h6d_A           80 ISTPTDFFMVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGL  157 (276)
T ss_dssp             EECSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCG
T ss_pred             EecCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeeccc
Confidence            999999999999999999998887654  489999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      +.....                                                                .......+||
T Consensus       158 ~~~~~~----------------------------------------------------------------~~~~~~~~~~  173 (276)
T 2h6d_A          158 SNMMSD----------------------------------------------------------------GEFLRTSCGS  173 (276)
T ss_dssp             GGCCCC--------------------------------------------------------------------------
T ss_pred             ccccCC----------------------------------------------------------------CcceecccCC
Confidence            865421                                                                1112244789


Q ss_pred             CCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCcc
Q 042539          252 EEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       252 ~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +.|+|||++.+..+ +.++|||||||++|+|++|..||.+.+.......+.......+ ..+..+.+||.+||+.||.+|
T Consensus       174 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  253 (276)
T 2h6d_A          174 PNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKR  253 (276)
T ss_dssp             ---CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             ccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHHHHHccCChhhC
Confidence            99999999998776 6899999999999999999999999888888777776554443 457899999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~  347 (412)
                      |    +++++++||||+.
T Consensus       254 p----s~~~~l~h~~~~~  267 (276)
T 2h6d_A          254 A----TIKDIREHEWFKQ  267 (276)
T ss_dssp             C----CHHHHHHSHHHHT
T ss_pred             C----CHHHHHhChhhcc
Confidence            9    6999999999975

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=8.4e-50  Score=391.57  Aligned_cols=263  Identities=25%  Similarity=0.412  Sum_probs=221.3

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...++..++|++++.||+|+||+||+|++..++.    .||+|++....   .......+.+|+.+++.++||||+++++
T Consensus        26 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~va~K~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~   98 (360)
T 3eqc_A           26 KVGELKDDDFEKISELGAGNGGVVFKVSHKPSGL----VMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYG   98 (360)
T ss_dssp             TCCCCCGGGEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEECCC---CHHHHHHHHHHHGGGGGCCCTTBCCEEE
T ss_pred             cccccccccceeeeeecCCCCeEEEEEEECCCCc----EEEEEEecccc---CHHHHHHHHHHHHHHHHCCCCCEEEEeE
Confidence            3567888999999999999999999999987554    49999997653   2344567888999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      ++.+++.+|+|||||.|++|..++....  .+++..+..++.|++.||.|||+. ||+||||||+|||++.+|.+||+||
T Consensus        99 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Df  176 (360)
T 3eqc_A           99 AFYSDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDF  176 (360)
T ss_dssp             EEEETTEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCC
T ss_pred             EEEECCEEEEEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEEC
Confidence            9999999999999999999998887654  499999999999999999999996 9999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.....                                                                 .....+
T Consensus       177 g~~~~~~~~-----------------------------------------------------------------~~~~~~  191 (360)
T 3eqc_A          177 GVSGQLIDS-----------------------------------------------------------------MANSFV  191 (360)
T ss_dssp             CCCHHHHHH-----------------------------------------------------------------C----C
T ss_pred             CCCcccccc-----------------------------------------------------------------cccCCC
Confidence            999765321                                                                 112457


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHH------------------------------
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN------------------------------  299 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~------------------------------  299 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||...+..+....                              
T Consensus       192 gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
T 3eqc_A          192 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDS  271 (360)
T ss_dssp             CCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC----------------------------
T ss_pred             CCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCC
Confidence            99999999999999999999999999999999999999988765543221                              


Q ss_pred             ------------HhcCC-CCC--CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          300 ------------VLMKT-PEF--VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       300 ------------i~~~~-~~~--~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                                  +.... +..  ...+.++.+||.+||+.||++||    +++++++||||++.+|+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~~~~~~~~  334 (360)
T 3eqc_A          272 RPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERA----DLKQLMVHAFIKRSDAE  334 (360)
T ss_dssp             --CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSC----CHHHHHTSHHHHHHHHS
T ss_pred             CCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCC----CHHHHhhChHhhcchHh
Confidence                        11111 111  23578999999999999999999    79999999999876554

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=7.8e-50  Score=394.05  Aligned_cols=269  Identities=25%  Similarity=0.403  Sum_probs=210.5

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|.+..++    +.||||++.+...  .......+.+|+.+++.++||||+++++++...
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~----~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   96 (371)
T 2xrw_A           23 VLKRYQNLKPIGSGAQGIVCAAYDAILE----RNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQ   96 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEECTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSC
T ss_pred             hhhheeEeeeeEecCCEEEEEEEECCCC----ceEEEEEeccccC--ChHHHHHHHHHHHHHHhcCCCCccceEEeeccc
Confidence            3589999999999999999999987754    4499999976432  234456777899999999999999999999766


Q ss_pred             C------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           96 E------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        96 ~------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +      .+|+|||||.| +|..++.    ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        97 ~~~~~~~~~~lv~e~~~~-~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Df  171 (371)
T 2xrw_A           97 KSLEEFQDVYIVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDF  171 (371)
T ss_dssp             CSTTTCCEEEEEEECCSE-EHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred             cccccccceEEEEEcCCC-CHHHHHh----hccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEe
Confidence            4      78999999975 5655553    23899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.....                                                                ......+
T Consensus       172 g~a~~~~~~----------------------------------------------------------------~~~~~~~  187 (371)
T 2xrw_A          172 GLARTAGTS----------------------------------------------------------------FMMTPYV  187 (371)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ecccccccc----------------------------------------------------------------cccCCce
Confidence            999754211                                                                1123457


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC----------------------CC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP----------------------EF  307 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~----------------------~~  307 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.+..++....                      .+
T Consensus       188 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (371)
T 2xrw_A          188 VTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKY  267 (371)
T ss_dssp             --CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCC
T ss_pred             ecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccc
Confidence            99999999999999999999999999999999999999999988877777654211                      11


Q ss_pred             CC---------------------CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCC
Q 042539          308 VG---------------------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPS  364 (412)
Q Consensus       308 ~~---------------------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~  364 (412)
                      ..                     .+.++++||.+||+.||++||    +++++++||||+....... ....+|..|.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~----t~~e~l~hp~~~~~~~~~~-~~~~~~~~~~  340 (371)
T 2xrw_A          268 AGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRI----SVDEALQHPYINVWYDPSE-AEAPPPKIPD  340 (371)
T ss_dssp             CCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSC----CHHHHHHSHHHHTTCCHHH-HTCCCCCCCT
T ss_pred             cccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCC----CHHHHhCCcchhhhcCccc-cCCCCCCCCC
Confidence            10                     035789999999999999999    7999999999986433222 2234444444

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=8.2e-50  Score=397.18  Aligned_cols=260  Identities=26%  Similarity=0.441  Sum_probs=211.7

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .+....+|++++.||+|+||+||+|++..++    . ||+|.+.+.....        .+|+++++.++||||++++++|
T Consensus        35 ~~~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~----~-~aikk~~~~~~~~--------~~E~~il~~l~h~niv~l~~~~  101 (394)
T 4e7w_A           35 GEQREIAYTNCKVIGNGSFGVVFQAKLVESD----E-VAIKKVLQDKRFK--------NRELQIMRIVKHPNVVDLKAFF  101 (394)
T ss_dssp             CCEEEEEEEEEEEEEEETTEEEEEEEETTTE----E-EEEEEEECCTTSC--------CHHHHHHHTCCCTTBCCEEEEE
T ss_pred             CCcccceEEEeEEEeeCCCeEEEEEEECCCC----e-EEEEEEecCcchH--------HHHHHHHHhCCCCCcceEEEEE
Confidence            3445678999999999999999999987543    2 7888775433211        2499999999999999999999


Q ss_pred             EeCC------eEEEEeeccCCCCchhHHH-hhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc-cCCCE
Q 042539           93 ETDE------FLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR-QSGHV  164 (412)
Q Consensus        93 ~~~~------~~~lv~e~~~gg~L~~~~~-~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~-~~g~v  164 (412)
                      ....      .+|+|||||.++.+..+.. ......+++..++.++.||+.||+|||++||+||||||+|||++ .+|.+
T Consensus       102 ~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~  181 (394)
T 4e7w_A          102 YSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVL  181 (394)
T ss_dssp             EEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEE
T ss_pred             EecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcE
Confidence            6543      3899999998865544432 22345699999999999999999999999999999999999999 78999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+|||+|+...                                                                .+..
T Consensus       182 kL~DFG~a~~~~----------------------------------------------------------------~~~~  197 (394)
T 4e7w_A          182 KLIDFGSAKILI----------------------------------------------------------------AGEP  197 (394)
T ss_dssp             EECCCTTCEECC----------------------------------------------------------------TTCC
T ss_pred             EEeeCCCccccc----------------------------------------------------------------CCCC
Confidence            999999997642                                                                1122


Q ss_pred             CcccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC---------------C
Q 042539          245 SNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP---------------E  306 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~---------------~  306 (412)
                      ..+.+||+.|+|||++.+. .++.++|||||||++|||++|++||.+.+..+.+..+...  .+               .
T Consensus       198 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~  277 (394)
T 4e7w_A          198 NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHK  277 (394)
T ss_dssp             CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSC
T ss_pred             CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhc
Confidence            2356789999999999875 4899999999999999999999999999887777666431  00               0


Q ss_pred             -------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          307 -------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       307 -------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                                   ....++++.+||.+||+.||.+||    ++.++++||||+++.|...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~hp~f~~~~~~~~  333 (394)
T 4e7w_A          278 FPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARL----TAIEALCHPFFDELRTGEA  333 (394)
T ss_dssp             CCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSC----CHHHHHTSGGGSTTTSSCC
T ss_pred             cccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCC----CHHHHhcChhhhhhccccc
Confidence                         123678999999999999999999    6999999999999887543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.8e-50  Score=388.74  Aligned_cols=265  Identities=26%  Similarity=0.376  Sum_probs=217.6

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      .++....++|++++.||+|+||+||+|++..++    +.||||+++..... .......+.+|+.++++++||||+++++
T Consensus         5 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~   79 (311)
T 3ork_A            5 TTPSHLSDRYELGEILGFGGMSEVHLARDLRDH----RDVAVKVLRADLAR-DPSFYLRFRREAQNAAALNHPAIVAVYD   79 (311)
T ss_dssp             CCCSEETTTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECTTTTT-SHHHHHHHHHHHTTCCCCCCTTBCCEEE
T ss_pred             CCcceecCcEEEEEEEccCCCEEEEEEEECCCC----ceEEEEEeCccccC-CHHHHHHHHHHHHHHHcCCCCCcceEEE
Confidence            345666789999999999999999999987754    45999999765432 3445667888999999999999999999


Q ss_pred             eEEeCC----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           91 SLETDE----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        91 ~~~~~~----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ++....    ..|+|||||.|++|..++....  .+++.++..++.||+.||+|||++||+||||||+|||++.+|.+||
T Consensus        80 ~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl  157 (311)
T 3ork_A           80 TGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKV  157 (311)
T ss_dssp             EEEEEETTEEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEE
T ss_pred             eeeccCCCCcccEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEE
Confidence            997654    3599999999999998887654  4999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.+.....                                                            ......
T Consensus       158 ~Dfg~a~~~~~~~~------------------------------------------------------------~~~~~~  177 (311)
T 3ork_A          158 MDFGIARAIADSGN------------------------------------------------------------SVTQTA  177 (311)
T ss_dssp             CCCSCC--------------------------------------------------------------------------
T ss_pred             eeccCccccccccc------------------------------------------------------------cccccc
Confidence            99999976532110                                                            111223


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRL  321 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~  321 (412)
                      ..+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+...++.......     ...+.++.+||.+|
T Consensus       178 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  257 (311)
T 3ork_A          178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKA  257 (311)
T ss_dssp             ----CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHH
T ss_pred             ccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999998887776666554332     45789999999999


Q ss_pred             hhhCCCccCCCCCChhhhhcCCCCC
Q 042539          322 LEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      |..||.+||    ++.+++.|+|++
T Consensus       258 l~~dP~~R~----~~~~~l~~~l~~  278 (311)
T 3ork_A          258 LAKNPENRY----QTAAEMRADLVR  278 (311)
T ss_dssp             TCSSGGGSC----SSHHHHHHHHHH
T ss_pred             HhcCHhhCh----hhHHHHHHHHHH
Confidence            999999999    578888899876

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=2.2e-49  Score=390.81  Aligned_cols=269  Identities=27%  Similarity=0.411  Sum_probs=221.0

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|.++.++    +.||||++.+...  .......+.+|+.+++.++||||+++++++...+.
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~----~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  115 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSG----EKVAIKKLSRPFQ--SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASS  115 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSS
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCC----CEEEEEEeccccc--chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCC
Confidence            69999999999999999999998754    4599999976542  23456677889999999999999999999987765


Q ss_pred             E------EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           98 L------AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        98 ~------~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .      |+||||+. ++|..++    ...+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+
T Consensus       116 ~~~~~~~~lv~e~~~-~~l~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~  190 (371)
T 4exu_A          116 LRNFYDFYLVMPFMQ-TDLQKIM----GMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGL  190 (371)
T ss_dssp             STTCCCCEEEEECCC-EEHHHHT----TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred             cccceeEEEEEcccc-ccHHHHh----hcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCc
Confidence            4      99999997 5665544    23499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++....                                                                  .....+||
T Consensus       191 a~~~~~------------------------------------------------------------------~~~~~~~t  204 (371)
T 4exu_A          191 ARHADA------------------------------------------------------------------EMTGYVVT  204 (371)
T ss_dssp             C--------------------------------------------------------------------------CTTCC
T ss_pred             cccccc------------------------------------------------------------------CcCCcccC
Confidence            975321                                                                  12245789


Q ss_pred             CCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C-----------------------
Q 042539          252 EEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P-----------------------  305 (412)
Q Consensus       252 ~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~-----------------------  305 (412)
                      +.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+.+.+++...  +                       
T Consensus       205 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (371)
T 4exu_A          205 RWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQT  284 (371)
T ss_dssp             CTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCC
T ss_pred             ccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCC
Confidence            99999999987 678999999999999999999999999988877766664310  0                       


Q ss_pred             -------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCCC
Q 042539          306 -------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREE  367 (412)
Q Consensus       306 -------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~~  367 (412)
                             .++..++.+.+||.+||+.||.+||    +++++++||||+.............||....+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~f~~~~~~~~~~~~~~~~~~~~~~  349 (371)
T 4exu_A          285 PRKDFTQLFPRASPQAADLLEKMLELDVDKRL----TAAQALTHPFFEPFRDPEEETEAQQPFDDSLEH  349 (371)
T ss_dssp             CCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSC----CHHHHHTSGGGTTTCCGGGCCCCSSCCCCTTSS
T ss_pred             cchhHHHhccccChHHHHHHHHHCCCChhhcC----CHHHHhcCcccccCCCcccccccccCcCcchhh
Confidence                   0234578999999999999999999    799999999999887765555555566655443

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.7e-49  Score=399.19  Aligned_cols=254  Identities=26%  Similarity=0.395  Sum_probs=212.5

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc------CCCccce
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL------SHPFLPK   87 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l------~hpnIv~   87 (412)
                      .....+|++++.||+|+||+||+|++..++    +.||||+++...     .....+.+|+++++.+      .|+||++
T Consensus        93 ~~~~~ry~~~~~LG~G~fg~V~~a~~~~~~----~~vAvK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~  163 (429)
T 3kvw_A           93 DHVAYRYEVLKVIGKGSFGQVVKAYDHKVH----QHVALKMVRNEK-----RFHRQAAEEIRILEHLRKQDKDNTMNVIH  163 (429)
T ss_dssp             CEETTTEEEEEEEEESSSEEEEEEEETTTT----EEEEEEEECSCH-----HHHHHHHHHHHHHHHHHTTCTTSCSCBCC
T ss_pred             CcccCcEEEEEEcccCccEEEEEEEECCCC----cEEEEEEECCcc-----chHHHHHHHHHHHHHHhhccccCCcCEEE
Confidence            344568999999999999999999988754    459999996542     2334555688888777      4679999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC--EE
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH--VT  165 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~--vk  165 (412)
                      +++++...+.+|+||||+. ++|..++.......+++..++.++.||+.||+|||++||+||||||+|||++.+|.  +|
T Consensus       164 ~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vk  242 (429)
T 3kvw_A          164 MLENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIK  242 (429)
T ss_dssp             EEEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEE
T ss_pred             EEeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceE
Confidence            9999999999999999995 57877777766566999999999999999999999999999999999999999987  99


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|||+|+...                                                                  ...
T Consensus       243 L~DFG~a~~~~------------------------------------------------------------------~~~  256 (429)
T 3kvw_A          243 VIDFGSSCYEH------------------------------------------------------------------QRV  256 (429)
T ss_dssp             ECCCTTCEETT------------------------------------------------------------------CCC
T ss_pred             EeecccceecC------------------------------------------------------------------Ccc
Confidence            99999986431                                                                  122


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC------------------
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP------------------  305 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~------------------  305 (412)
                      .+.+||+.|+|||++.+..++.++|||||||++|||++|++||.+.+..+.+..++..  .+                  
T Consensus       257 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~  336 (429)
T 3kvw_A          257 YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSK  336 (429)
T ss_dssp             CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTT
T ss_pred             cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCC
Confidence            3568999999999999999999999999999999999999999999887776655421  00                  


Q ss_pred             ---C-------------------------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          306 ---E-------------------------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       306 ---~-------------------------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                         .                                     ....++.+.+||.+||+.||++||    +++|+++||||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rp----ta~e~L~Hpw~  412 (429)
T 3kvw_A          337 GYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRM----TPGQALRHPWL  412 (429)
T ss_dssp             SCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSC----CHHHHHTSTTT
T ss_pred             CCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCC----CHHHHhCChhh
Confidence               0                                     001257799999999999999999    79999999999


Q ss_pred             CC
Q 042539          346 KG  347 (412)
Q Consensus       346 ~~  347 (412)
                      +.
T Consensus       413 ~~  414 (429)
T 3kvw_A          413 RR  414 (429)
T ss_dssp             C-
T ss_pred             cc
Confidence            85

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=4e-49  Score=388.29  Aligned_cols=255  Identities=29%  Similarity=0.495  Sum_probs=219.6

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh----hhhHHHHHHHHHHHHHHhhc-CCCccceeeeeE
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL----HAKHEAERRARWEIRVLSRL-SHPFLPKLLGSL   92 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~----~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~   92 (412)
                      ++|++++.||+|+||.||+|+++.++.    .||||++.....    .........+.+|+.+++.+ +||||+++++++
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~----~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGH----EFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCc----EEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            579999999999999999999976544    499999975431    12233456778899999999 799999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ......|+||||+.|++|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~  247 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFS  247 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcc
Confidence            99999999999999999998877653  4999999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      ..+..                                                                .......+||+
T Consensus       248 ~~~~~----------------------------------------------------------------~~~~~~~~gt~  263 (365)
T 2y7j_A          248 CHLEP----------------------------------------------------------------GEKLRELCGTP  263 (365)
T ss_dssp             EECCT----------------------------------------------------------------TCCBCCCCSCG
T ss_pred             cccCC----------------------------------------------------------------CcccccCCCCC
Confidence            75421                                                                11223568999


Q ss_pred             CCccceeecC------CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHh
Q 042539          253 EYVSPEVVRG------DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRL  321 (412)
Q Consensus       253 ~Y~APE~l~~------~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~  321 (412)
                      .|+|||++.+      ..++.++|||||||++|+|++|..||.+.+.......+......+     ...+..+.+||.+|
T Consensus       264 ~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~  343 (365)
T 2y7j_A          264 GYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRL  343 (365)
T ss_dssp             GGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHH
T ss_pred             CccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHH
Confidence            9999999864      357889999999999999999999999988888887777655433     35678899999999


Q ss_pred             hhhCCCccCCCCCChhhhhcCCCCC
Q 042539          322 LEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      |..||++||    +++++++||||+
T Consensus       344 L~~dP~~Rp----s~~ell~hp~f~  364 (365)
T 2y7j_A          344 LQVDPEARL----TAEQALQHPFFE  364 (365)
T ss_dssp             SCSSTTTSC----CHHHHHHSGGGC
T ss_pred             cCCChhHCc----CHHHHhcCcccC
Confidence            999999999    699999999996

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.4e-50  Score=396.23  Aligned_cols=256  Identities=26%  Similarity=0.465  Sum_probs=208.4

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      +...++|++++.||+|+||+||+|++..++.    .||||++......        ..+|+++++.++|||||+++++|.
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~----~vAiK~~~~~~~~--------~~~E~~il~~l~hpnIv~l~~~~~   70 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGK----RFALKKVLQDPRY--------KNRELDIMKVLDHVNIIKLVDYFY   70 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCC----EEEEEEEECCTTS--------CCHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCC----EEEEEEEecCcch--------HHHHHHHHHHcCCCCccchhheee
Confidence            4566899999999999999999999987554    4999998654321        124999999999999999999984


Q ss_pred             e--------------------------------------CCeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHH
Q 042539           94 T--------------------------------------DEFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSE  133 (412)
Q Consensus        94 ~--------------------------------------~~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~q  133 (412)
                      .                                      +..+++|||||.| +|...+..  .....+++..++.++.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~q  149 (383)
T 3eb0_A           71 TTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQ  149 (383)
T ss_dssp             EC-------------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             ecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            3                                      3458999999975 66555443  34456999999999999


Q ss_pred             HHHHHHHHHHcCceeeeCCCCceEEc-cCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhc
Q 042539          134 IICAIEHLHNMGIAYRDLKPENILIR-QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLH  212 (412)
Q Consensus       134 i~~aL~yLH~~~iiHrDlKp~NiLl~-~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (412)
                      |+.||.|||++||+||||||+|||++ .++.+||+|||+|+....                                   
T Consensus       150 i~~aL~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~-----------------------------------  194 (383)
T 3eb0_A          150 LFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIP-----------------------------------  194 (383)
T ss_dssp             HHHHHHHHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCT-----------------------------------
T ss_pred             HHHHHHHHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCC-----------------------------------
Confidence            99999999999999999999999998 678999999999975421                                   


Q ss_pred             cCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCC
Q 042539          213 ALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGK  291 (412)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~  291 (412)
                                                   .......+||+.|+|||++.+.. ++.++|||||||++|+|++|++||.+.
T Consensus       195 -----------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  245 (383)
T 3eb0_A          195 -----------------------------SEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGE  245 (383)
T ss_dssp             -----------------------------TSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -----------------------------CCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCC
Confidence                                         12223557899999999998754 899999999999999999999999999


Q ss_pred             CHHHHHHHHhcC--CC---------------C-------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          292 NRKETFRNVLMK--TP---------------E-------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       292 ~~~~~~~~i~~~--~~---------------~-------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +..+.+..++..  .+               .             ....++++.+||.+||+.||.+|+    ++.|+++
T Consensus       246 ~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----t~~e~l~  321 (383)
T 3eb0_A          246 TSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRI----NPYEAMA  321 (383)
T ss_dssp             SHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSC----CHHHHHT
T ss_pred             ChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCC----CHHHHhc
Confidence            888877766531  00               0             123577899999999999999999    7999999


Q ss_pred             CCCCCCCCc
Q 042539          342 HVFFKGVRW  350 (412)
Q Consensus       342 h~ff~~~~~  350 (412)
                      ||||+++.+
T Consensus       322 hp~f~~~~~  330 (383)
T 3eb0_A          322 HPFFDHLRN  330 (383)
T ss_dssp             SGGGHHHHH
T ss_pred             CHHHHHHHh
Confidence            999987544

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=4e-50  Score=402.59  Aligned_cols=260  Identities=27%  Similarity=0.432  Sum_probs=206.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh----hHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA----KHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .++|++++.||+|+||+||+|.++.++.    .||||++.+.....    .......+.+|+.+|++++||||+++++++
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~----~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~  209 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCK----KVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF  209 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCC----EEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEE
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCc----EEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            5789999999999999999999987554    49999998764321    112233567899999999999999999998


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC---CEEEccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---HVTLTDF  169 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g---~vkL~DF  169 (412)
                      . .+.+|+|||||.||+|..++...  ..+++.+++.++.||+.||+|||++||+||||||+|||++.++   .+||+||
T Consensus       210 ~-~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DF  286 (419)
T 3i6u_A          210 D-AEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDF  286 (419)
T ss_dssp             E-SSEEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred             e-cCceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeec
Confidence            5 45689999999999997776543  4599999999999999999999999999999999999997655   4999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+....                                                                .....+.+
T Consensus       287 G~a~~~~~----------------------------------------------------------------~~~~~~~~  302 (419)
T 3i6u_A          287 GHSKILGE----------------------------------------------------------------TSLMRTLC  302 (419)
T ss_dssp             STTTSCC-------------------------------------------------------------------------
T ss_pred             ccceecCC----------------------------------------------------------------CccccccC
Confidence            99975421                                                                11223568


Q ss_pred             cCCCCccceeecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCCCCC-----CCCChHHHHHHHH
Q 042539          250 GTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKTPEF-----VGQRTALTDLIQR  320 (412)
Q Consensus       250 gt~~Y~APE~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~dli~~  320 (412)
                      ||+.|+|||++.+   ..++.++|||||||++|+|++|++||.+.... .....+......+     ...++.+.+||.+
T Consensus       303 gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~  382 (419)
T 3i6u_A          303 GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKK  382 (419)
T ss_dssp             --CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHH
T ss_pred             CCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHH
Confidence            9999999999864   56789999999999999999999999875433 2333343333222     3568899999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      ||+.||.+||    +++++++||||++.+|.
T Consensus       383 ~L~~dP~~Rp----s~~e~l~hp~~~~~~~~  409 (419)
T 3i6u_A          383 LLVVDPKARF----TTEEALRHPWLQDEDMK  409 (419)
T ss_dssp             HSCSSTTTSC----CHHHHHHSGGGCCHHHH
T ss_pred             HccCChhHCc----CHHHHhCCcccCChhHH
Confidence            9999999999    69999999999987764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.4e-49  Score=375.68  Aligned_cols=257  Identities=27%  Similarity=0.414  Sum_probs=212.9

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||.||+|++..++.    .||+|++..... ......+.+.+|+.++++++||||++++++
T Consensus         5 ~g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~   79 (294)
T 4eqm_A            5 IGKIINERYKIVDKLGGGGMSTVYLAEDTILNI----KVAIKAIFIPPR-EKEETLKRFEREVHNSSQLSHQNIVSMIDV   79 (294)
T ss_dssp             CSSCEETTEEEEEEEEEETTEEEEEEEETTTCS----EEEEEEEECCSS-CCHHHHHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred             hhhHhhccEEEEEEEccCCCEEEEEEEECCCCC----eEEEEEeccCcc-ccHHHHHHHHHHHHHHhcCCCCCCceEEEe
Confidence            345667899999999999999999999877544    499999865443 234556778889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+|||||.|++|..++....  .+++..++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        80 ~~~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~  157 (294)
T 4eqm_A           80 DEEDDCYYLVMEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGI  157 (294)
T ss_dssp             EECSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeeCCeEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCC
Confidence            999999999999999999998887654  499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.....                                                              ........+||
T Consensus       158 ~~~~~~~--------------------------------------------------------------~~~~~~~~~gt  175 (294)
T 4eqm_A          158 AKALSET--------------------------------------------------------------SLTQTNHVLGT  175 (294)
T ss_dssp             STTC---------------------------------------------------------------------------C
T ss_pred             ccccccc--------------------------------------------------------------cccccCccccC
Confidence            9754211                                                              01122346799


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-C-----CCCCChHHHHHHHHhhhhC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-E-----FVGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~-----~~~~~~~~~dli~~~L~~d  325 (412)
                      +.|+|||++.+..++.++|||||||++|+|++|+.||.+.+......+...... .     ....++.+.++|.+||..|
T Consensus       176 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  255 (294)
T 4eqm_A          176 VQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKD  255 (294)
T ss_dssp             CSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSS
T ss_pred             ccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999887776655554332 1     2457889999999999999


Q ss_pred             CCccCCCCCChhhhh
Q 042539          326 PVKRLGYLRGACEIK  340 (412)
Q Consensus       326 P~~R~~~~~~~~e~l  340 (412)
                      |.+||+   ++++++
T Consensus       256 p~~R~~---~~~~l~  267 (294)
T 4eqm_A          256 KANRYK---TIQEMK  267 (294)
T ss_dssp             GGGSCS---SHHHHH
T ss_pred             HhHccc---cHHHHH
Confidence            999995   455444

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=6.5e-50  Score=378.59  Aligned_cols=261  Identities=26%  Similarity=0.467  Sum_probs=222.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh--HHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      .++|++++.||+|+||+||+|+++.++.    .||+|++++......  ......+.+|+.+++.++||||+++++++.+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   79 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGK----EYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN   79 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCC----eeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC
Confidence            4689999999999999999999987554    499999977643221  1124567789999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC----CEEEcccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG----HVTLTDFD  170 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g----~vkL~DFG  170 (412)
                      .+..|+||||+.|++|..++....  .+++.++..++.||+.||.|||++||+||||||+||+++.++    .+||+|||
T Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg  157 (283)
T 3bhy_A           80 KTDVVLILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFG  157 (283)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred             CCeEEEEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecc
Confidence            999999999999999998886654  499999999999999999999999999999999999999887    89999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      ++......                                                                .......|
T Consensus       158 ~~~~~~~~----------------------------------------------------------------~~~~~~~~  173 (283)
T 3bhy_A          158 IAHKIEAG----------------------------------------------------------------NEFKNIFG  173 (283)
T ss_dssp             TCEECC------------------------------------------------------------------------CC
T ss_pred             cceeccCC----------------------------------------------------------------CcccccCC
Confidence            98754211                                                                11224468


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~d  325 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+......+     ...+..+.+||.+||..|
T Consensus       174 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  253 (283)
T 3bhy_A          174 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKD  253 (283)
T ss_dssp             CGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSS
T ss_pred             CcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999999998888887776554433     356789999999999999


Q ss_pred             CCccCCCCCChhhhhcCCCCCCCCch
Q 042539          326 PVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      |.+||    ++.++++||||+.+.+.
T Consensus       254 p~~Rp----s~~~~l~h~~~~~~~~~  275 (283)
T 3bhy_A          254 PKRRM----TIAQSLEHSWIKAIRRR  275 (283)
T ss_dssp             GGGSC----CHHHHHHCHHHHHHHHC
T ss_pred             HhHCc----CHHHHHhCHHHHHHHHH
Confidence            99999    69999999999876543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.3e-49  Score=384.98  Aligned_cols=252  Identities=25%  Similarity=0.407  Sum_probs=206.9

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      ..++|++++.||+|+||+||+|++..++.    .||||+++...       ...+.+|+.+++.++ ||||+++++++.+
T Consensus        34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~-------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~  102 (330)
T 3nsz_A           34 NQDDYQLVRKLGRGKYSEVFEAINITNNE----KVVVKILKPVK-------KKKIKREIKILENLRGGPNIITLADIVKD  102 (330)
T ss_dssp             EGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEECSCC-------HHHHHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             CCCceEEEEEecccCCeEEEEEEECCCCc----EEEEEEecccc-------hHHHHHHHHHHHHcCCCCCEEEeeeeecc
Confidence            45789999999999999999999877554    49999996432       244667999999997 9999999999988


Q ss_pred             --CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEccccc
Q 042539           95 --DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDL  171 (412)
Q Consensus        95 --~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFGl  171 (412)
                        ....++||||+.|++|..++.     .+++.+++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+
T Consensus       103 ~~~~~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~  177 (330)
T 3nsz_A          103 PVSRTPALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL  177 (330)
T ss_dssp             TTTCCEEEEEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             CCCCceEEEEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCC
Confidence              678999999999999977653     289999999999999999999999999999999999999777 899999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+....                                                                .......+||
T Consensus       178 a~~~~~----------------------------------------------------------------~~~~~~~~~~  193 (330)
T 3nsz_A          178 AEFYHP----------------------------------------------------------------GQEYNVRVAS  193 (330)
T ss_dssp             CEECCT----------------------------------------------------------------TCCCCSCCSC
T ss_pred             ceEcCC----------------------------------------------------------------CCcccccccc
Confidence            975421                                                                1122345789


Q ss_pred             CCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhc-------------CCCC----------
Q 042539          252 EEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLM-------------KTPE----------  306 (412)
Q Consensus       252 ~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~-------------~~~~----------  306 (412)
                      +.|+|||++.+ ..++.++|||||||++|+|++|..||.. .+..+.+..+..             ....          
T Consensus       194 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
T 3nsz_A          194 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILG  273 (330)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHC
T ss_pred             ccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhh
Confidence            99999999987 5689999999999999999999999944 333333322211             0000          


Q ss_pred             ---------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          307 ---------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       307 ---------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                                     ....++++.+||.+||+.||++||    +++|+++||||+++.|+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----ta~e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          274 RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRL----TAREAMEHPYFYTVVKD  329 (330)
T ss_dssp             CCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSC----CHHHHHTSGGGTTCC--
T ss_pred             hccccchhhhccccccccCCHHHHHHHHHHhcCCcccCC----CHHHHhcCccHhhhccC
Confidence                           011578999999999999999999    79999999999998765

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=8.6e-50  Score=393.32  Aligned_cols=272  Identities=17%  Similarity=0.244  Sum_probs=224.9

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..++..++|++++.||+|+||+||+|++... +..+++.||||+++....   ......+.+|+.++++++||||+++++
T Consensus        65 ~~~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~  141 (367)
T 3l9p_A           65 LKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS---EQDELDFLMEALIISKFNHQNIVRCIG  141 (367)
T ss_dssp             SCBCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCC---HHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             hhhcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccC---hhhHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3467789999999999999999999997643 223566799999965422   233456778999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC---
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQND-----RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---  162 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~-----~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g---  162 (412)
                      ++.+....|+|||||.||+|..++.....     ..+++.++..++.||+.||+|||++||+||||||+|||++.+|   
T Consensus       142 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~  221 (367)
T 3l9p_A          142 VSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGR  221 (367)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTC
T ss_pred             EEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCc
Confidence            99999999999999999999988876542     3589999999999999999999999999999999999999665   


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+|+.+....                                                             ..
T Consensus       222 ~~kL~DFG~a~~~~~~~-------------------------------------------------------------~~  240 (367)
T 3l9p_A          222 VAKIGDFGMARDIYRAG-------------------------------------------------------------YY  240 (367)
T ss_dssp             CEEECCCHHHHHHHHHS-------------------------------------------------------------SC
T ss_pred             eEEECCCcccccccccc-------------------------------------------------------------cc
Confidence            49999999998653221                                                             11


Q ss_pred             CCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQ  319 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~  319 (412)
                      ......+||+.|+|||++.+..++.++|||||||++|||++ |..||.+.+..+....+.....  .....++.+.+||.
T Consensus       241 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~  320 (367)
T 3l9p_A          241 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMT  320 (367)
T ss_dssp             TTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             ccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHH
Confidence            12235578999999999999999999999999999999998 9999999998888887776442  23456789999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      +||+.||.+||    ++.++++|.++-..+.+
T Consensus       321 ~~l~~dP~~Rp----s~~eil~~l~~~~~~~~  348 (367)
T 3l9p_A          321 QCWQHQPEDRP----NFAIILERIEYCTQDPD  348 (367)
T ss_dssp             HHTCSSGGGSC----CHHHHHHHHHHHHHCHH
T ss_pred             HHcCCCHhHCc----CHHHHHHHHHHHhhChh
Confidence            99999999999    68999998765433333

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=3.2e-49  Score=378.40  Aligned_cols=254  Identities=30%  Similarity=0.462  Sum_probs=218.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|+++.++.    .||+|+++....    .....+.+|+.+++.++||||+++++++.+.
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   78 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGK----LFALKCIKKSPA----FRDSSLENEIAVLKKIKHENIVTLEDIYEST   78 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCC----EEEEEEEecccc----cchHHHHHHHHHHHhCCCCCeeehhhhcccC
Confidence            35789999999999999999999877544    499999976432    1234567799999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE---ccCCCEEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl---~~~g~vkL~DFGla  172 (412)
                      +.+|+|||||.|++|..++....  .+++..+..++.|++.||.|||++||+||||||+|||+   +.++.+||+|||++
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~  156 (304)
T 2jam_A           79 THYYLVMQLVSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLS  156 (304)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTT
T ss_pred             CEEEEEEEcCCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcc
Confidence            99999999999999988876554  49999999999999999999999999999999999999   77899999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +....                                                                 ......+||+
T Consensus       157 ~~~~~-----------------------------------------------------------------~~~~~~~~~~  171 (304)
T 2jam_A          157 KMEQN-----------------------------------------------------------------GIMSTACGTP  171 (304)
T ss_dssp             CCCCC-----------------------------------------------------------------BTTHHHHSCC
T ss_pred             eecCC-----------------------------------------------------------------CccccccCCC
Confidence            64311                                                                 1122457999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----CCCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----FVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+......     ....++++.+||.+||..||.
T Consensus       172 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~  251 (304)
T 2jam_A          172 GYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPN  251 (304)
T ss_dssp             CBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTT
T ss_pred             CccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChh
Confidence            999999999999999999999999999999999999999888888887765433     245689999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCC
Q 042539          328 KRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      +||    +++++++||||++.
T Consensus       252 ~Rp----s~~~~l~h~~~~~~  268 (304)
T 2jam_A          252 ERY----TCEKALSHPWIDGN  268 (304)
T ss_dssp             TSC----CHHHHHTSHHHHSS
T ss_pred             HCc----CHHHHhcCccccCC
Confidence            999    69999999999763

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.8e-49  Score=387.85  Aligned_cols=263  Identities=19%  Similarity=0.268  Sum_probs=220.4

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccc
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLP   86 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv   86 (412)
                      ....+..++|++++.||+|+||+||+|++...+.   ..+..||||+++...   .......+.+|+.+++.+ +||||+
T Consensus        74 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv  150 (370)
T 2psq_A           74 PKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNII  150 (370)
T ss_dssp             TTTBCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHSCCCTTBC
T ss_pred             ccccccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---CHHHHHHHHHHHHHHHHhcCCCCEe
Confidence            3457788999999999999999999999864332   244569999997653   234456788899999999 799999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCC
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND--------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLK  152 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~--------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlK  152 (412)
                      ++++++.+++.+|+|||||.||+|..++.....              ..+++.++..++.||+.||+|||++||+|||||
T Consensus       151 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  230 (370)
T 2psq_A          151 NLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLA  230 (370)
T ss_dssp             CEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             eEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            999999999999999999999999988876431              348899999999999999999999999999999


Q ss_pred             CCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          153 PENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       153 p~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                      |+|||++.+|.+||+|||+++.+....                                                     
T Consensus       231 p~NIll~~~~~~kl~DFG~a~~~~~~~-----------------------------------------------------  257 (370)
T 2psq_A          231 ARNVLVTENNVMKIADFGLARDINNID-----------------------------------------------------  257 (370)
T ss_dssp             GGGEEECTTCCEEECCCSSCEETTCCC-----------------------------------------------------
T ss_pred             hhhEEECCCCCEEEccccCCcccCccc-----------------------------------------------------
Confidence            999999999999999999997653110                                                     


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCC
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVG  309 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~  309 (412)
                              .........||+.|+|||++.+..++.++|||||||++|||++ |..||.+.+..+.+..+.....  ....
T Consensus       258 --------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  329 (370)
T 2psq_A          258 --------YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPAN  329 (370)
T ss_dssp             --------TTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTT
T ss_pred             --------ceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCC
Confidence                    0111223467889999999999999999999999999999998 9999999887777776665432  2345


Q ss_pred             CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       310 ~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ++.++.+||.+||..||.+||    ++.++++
T Consensus       330 ~~~~l~~li~~~l~~dP~~Rp----t~~ell~  357 (370)
T 2psq_A          330 CTNELYMMMRDCWHAVPSQRP----TFKQLVE  357 (370)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhhCc----CHHHHHH
Confidence            678999999999999999999    6888876

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=7e-50  Score=381.56  Aligned_cols=271  Identities=25%  Similarity=0.383  Sum_probs=198.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||+||+|++..++.    .||||++.....   ......+.+|+.+++.++||||++++++
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~   81 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATAVVQAAYCAPKKE----KVAIKRINLEKC---QTSMDELLKEIQAMSQCHHPNIVSYYTS   81 (303)
T ss_dssp             ----CCCCCEEEEECC---CCCEEEEEC----C----EEEEECCC-------------------CCCCCCCTTBCCEEEE
T ss_pred             ccccchhhhhhhheeccccceEEEEEEECCCCc----EEEEEEEEhhhc---chhHHHHHHHHHHHhhcCCCCEeeEEEE
Confidence            457888999999999999999999998876544    499999965432   2334567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhh------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEE
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQ------NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT  165 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~------~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vk  165 (412)
                      +...+..|+||||+.|++|.+++...      ....+++..+..++.||+.||.|||++||+||||||+|||++.+|.+|
T Consensus        82 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~k  161 (303)
T 2vwi_A           82 FVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQ  161 (303)
T ss_dssp             EESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEE
T ss_pred             EeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEE
Confidence            99999999999999999998887641      234589999999999999999999999999999999999999999999


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|||+++........                                                          ......
T Consensus       162 l~dfg~~~~~~~~~~~----------------------------------------------------------~~~~~~  183 (303)
T 2vwi_A          162 IADFGVSAFLATGGDI----------------------------------------------------------TRNKVR  183 (303)
T ss_dssp             ECCCHHHHHCC---------------------------------------------------------------------
T ss_pred             EEeccchheeccCCCc----------------------------------------------------------cchhhh
Confidence            9999998765321100                                                          011122


Q ss_pred             cccccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----------CCCCChH
Q 042539          246 NSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----------FVGQRTA  313 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----------~~~~~~~  313 (412)
                      ...+||+.|+|||++.+ ..++.++|||||||++|+|++|..||.+.+............+.           ....+.+
T Consensus       184 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (303)
T 2vwi_A          184 KTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKS  263 (303)
T ss_dssp             ----CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHH
T ss_pred             cccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHH
Confidence            35679999999999976 56889999999999999999999999987766555444433211           1345688


Q ss_pred             HHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          314 LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       314 ~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      +.+||.+||..||.+||    ++.++++||||++..++
T Consensus       264 ~~~li~~~l~~dp~~Rp----s~~~ll~h~~~~~~~~~  297 (303)
T 2vwi_A          264 FRKMISLCLQKDPEKRP----TAAELLRHKFFQKAKNK  297 (303)
T ss_dssp             HHHHHHHHCCSSGGGSC----CHHHHHTSTTC------
T ss_pred             HHHHHHHHccCChhhCc----CHHHHhhChhhhcCCCC
Confidence            99999999999999999    69999999999987654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-50  Score=390.86  Aligned_cols=251  Identities=23%  Similarity=0.376  Sum_probs=209.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh----HHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK----HEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~----~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .++|++++.||+|+||+||+|+++.++    +.||||++++......    ......+.+|+.+++.++||||+++++++
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~   98 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKN----KEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIF   98 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTT----EEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCC----cEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            468999999999999999999988754    4499999977643211    11223455699999999999999999999


Q ss_pred             EeCCeEEEEeeccCCC-CchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           93 ETDEFLAWAVPYCPGG-DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg-~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .+.+.+++||||+.+| +|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        99 ~~~~~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~  176 (335)
T 3dls_A           99 ENQGFFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGS  176 (335)
T ss_dssp             ECSSEEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             eeCCEEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeeccc
Confidence            9999999999999776 887776543  3599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++...                                                                ......+.+||
T Consensus       177 a~~~~----------------------------------------------------------------~~~~~~~~~gt  192 (335)
T 3dls_A          177 AAYLE----------------------------------------------------------------RGKLFYTFCGT  192 (335)
T ss_dssp             CEECC----------------------------------------------------------------TTCCBCEECSC
T ss_pred             ceECC----------------------------------------------------------------CCCceeccCCC
Confidence            97542                                                                11223356799


Q ss_pred             CCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC-CCCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          252 EEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-TPEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       252 ~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~-~~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +.|+|||++.+..+ +.++|||||||++|+|++|..||.....      .... .......++++.+||.+||..||.+|
T Consensus       193 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  266 (335)
T 3dls_A          193 IEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE------TVEAAIHPPYLVSKELMSLVSGLLQPVPERR  266 (335)
T ss_dssp             GGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG------GTTTCCCCSSCCCHHHHHHHHHHTCSSGGGS
T ss_pred             ccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH------HHhhccCCCcccCHHHHHHHHHHccCChhhC
Confidence            99999999998887 8899999999999999999999976321      1111 12233468999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~  347 (412)
                      |    +++++++||||+.
T Consensus       267 p----s~~ell~hp~~~~  280 (335)
T 3dls_A          267 T----TLEKLVTDPWVTQ  280 (335)
T ss_dssp             C----CHHHHHHCTTTTC
T ss_pred             c----CHHHHhcCccccC
Confidence            9    6999999999975

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.9e-49  Score=397.75  Aligned_cols=255  Identities=24%  Similarity=0.418  Sum_probs=207.1

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ...+|++++.||+|+||+||+|+++.++    +.||||++.+...        ...+|+++|+.++|||||+++++|...
T Consensus        52 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~----~~vaiK~~~~~~~--------~~~~E~~il~~l~hpniv~l~~~~~~~  119 (420)
T 1j1b_A           52 QEVSYTDTKVIGNGSFGVVYQAKLCDSG----ELVAIKKVLQDKR--------FKNRELQIMRKLDHCNIVRLRYFFYSS  119 (420)
T ss_dssp             EEEEEEEEEEEEECSSEEEEEEEETTTC----CEEEEEEEECCTT--------SCCHHHHHHHTCCCTTBCCEEEEEEEE
T ss_pred             ccceEEeeeEEeeCCCEEEEEEEECCCC----cEEEEEEecccch--------hHHHHHHHHHHcCCCCccceeeEEecc
Confidence            3457999999999999999999998754    4499999865432        122599999999999999999998542


Q ss_pred             ------CeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEE
Q 042539           96 ------EFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTL  166 (412)
Q Consensus        96 ------~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL  166 (412)
                            ..+++||||+.++ |..++..  .....+++..++.++.||+.||+|||++||+||||||+|||++.+ +.+||
T Consensus       120 ~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl  198 (420)
T 1j1b_A          120 GEKKDEVYLNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKL  198 (420)
T ss_dssp             ETTTTEEEEEEEEECCCEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEE
T ss_pred             CCCCcceeEEeehhccccc-HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEe
Confidence                  2478999999764 4333322  334569999999999999999999999999999999999999965 56899


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.+..                                                                +....
T Consensus       199 ~DFG~a~~~~~----------------------------------------------------------------~~~~~  214 (420)
T 1j1b_A          199 CDFGSAKQLVR----------------------------------------------------------------GEPNV  214 (420)
T ss_dssp             CCCTTCEECCT----------------------------------------------------------------TCCCC
T ss_pred             ccchhhhhccc----------------------------------------------------------------CCCce
Confidence            99999975421                                                                11223


Q ss_pred             ccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--C---------------CCC-
Q 042539          247 SFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--T---------------PEF-  307 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~---------------~~~-  307 (412)
                      ..+||+.|+|||++.+. .++.++|||||||++|||++|++||.+.+..+.+.+++..  .               ..+ 
T Consensus       215 ~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p  294 (420)
T 1j1b_A          215 SYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFP  294 (420)
T ss_dssp             SCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCC
T ss_pred             eeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccC
Confidence            46799999999999875 6899999999999999999999999998887776665431  0               011 


Q ss_pred             ------------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          308 ------------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       308 ------------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                                  ...++++.+||.+||++||.+|+    ++.|+++||||+++.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~----t~~e~l~hp~f~~~~~~  346 (420)
T 1j1b_A          295 QIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL----TPLEACAHSFFDELRDP  346 (420)
T ss_dssp             CCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGGGGGCT
T ss_pred             ccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCC----CHHHHhCCHhhcccccc
Confidence                        23468999999999999999999    79999999999887654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=7.5e-49  Score=369.71  Aligned_cols=259  Identities=24%  Similarity=0.412  Sum_probs=215.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||.||+|+++.++.    .||+|++......   .....+.+|+.+++.++||||+++++++.++
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   77 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEE----AVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREG   77 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCC----EEEEEEEEGGGCT---THHHHHHHHHHHHHTCCCTTBCCEEEEEEET
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCc----EEEEEEeeeccch---hhhHHHHHHHHHHHhcCCCCceeeeeEEEcC
Confidence            35789999999999999999999876544    4999999755432   2345677899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +..|+||||+.|++|..++...  ..+++.++..++.|++.||.|||++||+||||||+||+++.+|.+||+|||++..+
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  155 (276)
T 2yex_A           78 NIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVF  155 (276)
T ss_dssp             TEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CEEEEEEEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCcccc
Confidence            9999999999999998876543  35999999999999999999999999999999999999999999999999999754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ....                                                             ........+||+.|+
T Consensus       156 ~~~~-------------------------------------------------------------~~~~~~~~~~~~~y~  174 (276)
T 2yex_A          156 RYNN-------------------------------------------------------------RERLLNKMCGTLPYV  174 (276)
T ss_dssp             EETT-------------------------------------------------------------EECCBCCCCSCGGGC
T ss_pred             CCCc-------------------------------------------------------------chhcccCCccccCcc
Confidence            2110                                                             001123457999999


Q ss_pred             cceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCC---CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          256 SPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       256 APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~---~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |||++.+..+ +.++|||||||++|+|++|..||.+.+.. ..+..+....   ......++.+.+||.+||..||.+||
T Consensus       175 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  254 (276)
T 2yex_A          175 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARI  254 (276)
T ss_dssp             CGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             ChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCC
Confidence            9999988775 78999999999999999999999876543 2333333322   22345688999999999999999999


Q ss_pred             CCCCChhhhhcCCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~~  348 (412)
                          +++++++||||++.
T Consensus       255 ----s~~~il~~~~~~~~  268 (276)
T 2yex_A          255 ----TIPDIKKDRWYNKP  268 (276)
T ss_dssp             ----CHHHHTTCTTTTCC
T ss_pred             ----CHHHHhcCccccCh
Confidence                69999999999864

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=7.8e-49  Score=383.85  Aligned_cols=254  Identities=24%  Similarity=0.329  Sum_probs=214.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|++++.||+|+||+||+|++..++    +.||||++...... .....+.+.+|++++++++||||+++++++.+++.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~----~~vaiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  128 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNS----EVVAIKKMSYSGKQ-SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT  128 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEESCSSC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCC----eEEEEEEEcccccc-chHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCe
Confidence            45999999999999999999987644    45999999765332 23445677889999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      .|+|||||.| +|..++.... ..+++.++..++.|++.||.|||++||+||||||+|||++.+|.+||+|||+++... 
T Consensus       129 ~~lv~e~~~g-~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~-  205 (348)
T 1u5q_A          129 AWLVMEYCLG-SASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA-  205 (348)
T ss_dssp             EEEEEECCSE-EHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS-
T ss_pred             EEEEEecCCC-CHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecC-
Confidence            9999999975 6655554432 459999999999999999999999999999999999999999999999999986431 


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                        .....+||+.|+||
T Consensus       206 ------------------------------------------------------------------~~~~~~gt~~y~aP  219 (348)
T 1u5q_A          206 ------------------------------------------------------------------PANSFVGTPYWMAP  219 (348)
T ss_dssp             ------------------------------------------------------------------SBCCCCSCGGGCCH
T ss_pred             ------------------------------------------------------------------CCCcccCCcceeCH
Confidence                                                                              11245799999999


Q ss_pred             eeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHHHHhhhhCCCccCC
Q 042539          258 EVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       258 E~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      |++.   +..++.++|||||||++|||++|++||.+.+.......+......   ....++.+.+||.+||+.||.+|| 
T Consensus       220 E~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp-  298 (348)
T 1u5q_A          220 EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRP-  298 (348)
T ss_dssp             HHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSC-
T ss_pred             hhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCc-
Confidence            9985   456899999999999999999999999998877776666654322   235678999999999999999999 


Q ss_pred             CCCChhhhhcCCCCCCCC
Q 042539          332 YLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       332 ~~~~~~e~l~h~ff~~~~  349 (412)
                         +++++++|+||....
T Consensus       299 ---s~~~ll~h~~~~~~~  313 (348)
T 1u5q_A          299 ---TSEVLLKHRFVLRER  313 (348)
T ss_dssp             ---CHHHHTTCHHHHSCC
T ss_pred             ---CHHHHhhChhhhccC
Confidence               699999999997543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.4e-48  Score=382.13  Aligned_cols=269  Identities=26%  Similarity=0.390  Sum_probs=219.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|.+.+.||+|+||.||+|+++.++    +.||||++.+...  .......+.+|+.+++.++||||+++++++....
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   96 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSG----EKVAIKKLSRPFQ--SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPAS   96 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEESSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCS
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCC----CEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCCcccHhheEeccc
Confidence            378999999999999999999987754    4599999976532  3345667788999999999999999999998765


Q ss_pred             e------EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           97 F------LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        97 ~------~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      .      +|+||||+. ++|..++.    ..+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||
T Consensus        97 ~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg  171 (353)
T 3coi_A           97 SLRNFYDFYLVMPFMQ-TDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFG  171 (353)
T ss_dssp             SGGGCCCCEEEEECCS-EEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTT
T ss_pred             ccccceeEEEEecccc-CCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecc
Confidence            4      599999997 57765542    249999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++....                                                                  .....+|
T Consensus       172 ~~~~~~~------------------------------------------------------------------~~~~~~~  185 (353)
T 3coi_A          172 LARHADA------------------------------------------------------------------EMTGYVV  185 (353)
T ss_dssp             CTTC--------------------------------------------------------------------------CC
T ss_pred             cccCCCC------------------------------------------------------------------Ccccccc
Confidence            9864311                                                                  1123578


Q ss_pred             CCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-------------------------
Q 042539          251 TEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-------------------------  304 (412)
Q Consensus       251 t~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-------------------------  304 (412)
                      |+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+.+..+....                         
T Consensus       186 t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
T 3coi_A          186 TRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQ  265 (353)
T ss_dssp             SBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCB
T ss_pred             CcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcC
Confidence            999999999987 678999999999999999999999999988777665554210                         


Q ss_pred             -------CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcccCCCCCCCCCC
Q 042539          305 -------PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSRE  366 (412)
Q Consensus       305 -------~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~~~~pp~~p~~~  366 (412)
                             ...+..++++.+||.+||..||.+||    +++++++||||+.............+|.+..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rp----t~~e~l~hp~f~~~~~~~~~~~~~~~~~~~~~  330 (353)
T 3coi_A          266 TPRKDFTQLFPRASPQAADLLEKMLELDVDKRL----TAAQALTHPFFEPFRDPEEETEAQQPFDDSLE  330 (353)
T ss_dssp             CSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSC----CHHHHHTSGGGTTTCCGGGCCCCSSCCCCTTT
T ss_pred             CCCccHHHhcCCcCHHHHHHHHHHcCCCcccCC----CHHHHhcCcchhhccCccccccCCCCCccchh
Confidence                   01235678999999999999999999    69999999999988766554444455655443

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.1e-48  Score=371.18  Aligned_cols=259  Identities=23%  Similarity=0.356  Sum_probs=201.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|++++.||+|+||+||+|++..++    +.||+|+++....  .......+..+...++.++||||+++++++.
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~   76 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHVPSG----QIMAVKRIRATVN--SQEQKRLLMDLDISMRTVDCPFTVTFYGALF   76 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEC---C--HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEecCCC----eEEEEEEeecccC--cHHHHHHHHHHHHHHHhCCCCeEEEEeeeee
Confidence            577899999999999999999999997754    4499999976532  2233344444556688889999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEcccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +++..|+|||||.| +|..++..  .....+++..++.++.|++.||.|||++ ||+||||||+|||++.++.+||+|||
T Consensus        77 ~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T 3fme_A           77 REGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFG  155 (290)
T ss_dssp             CSSSEEEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC-
T ss_pred             ccCCEEEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecC
Confidence            99999999999975 66555443  2345699999999999999999999998 99999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.....                                                                .......|
T Consensus       156 ~~~~~~~~----------------------------------------------------------------~~~~~~~~  171 (290)
T 3fme_A          156 ISGYLVDD----------------------------------------------------------------VAKDIDAG  171 (290)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             Cccccccc----------------------------------------------------------------ccccccCC
Confidence            99765211                                                                11223469


Q ss_pred             CCCCccceee----cCCCCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcC-CCCC--CCCChHHHHHHHHhh
Q 042539          251 TEEYVSPEVV----RGDGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMK-TPEF--VGQRTALTDLIQRLL  322 (412)
Q Consensus       251 t~~Y~APE~l----~~~~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~-~~~~--~~~~~~~~dli~~~L  322 (412)
                      |+.|+|||++    .+..++.++|||||||++|+|++|+.||.. ............. .+..  ...++++.+||.+||
T Consensus       172 t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  251 (290)
T 3fme_A          172 CKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCL  251 (290)
T ss_dssp             CCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHT
T ss_pred             CccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHh
Confidence            9999999996    455689999999999999999999999986 3444444444433 2222  356889999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCC
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +.||.+||    ++.++++||||+.
T Consensus       252 ~~~p~~Rp----t~~e~l~hp~f~~  272 (290)
T 3fme_A          252 KKNSKERP----TYPELMQHPFFTL  272 (290)
T ss_dssp             CSSGGGSC----CHHHHTTSHHHHH
T ss_pred             hcChhhCc----CHHHHHhCccccc
Confidence            99999999    6999999999974

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=3.5e-48  Score=368.45  Aligned_cols=255  Identities=22%  Similarity=0.333  Sum_probs=211.4

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ..-+.|++.+.||+|+||+||+|.+..++.    .||+|++......  ....+.+.+|+.+++.++||||+++++++..
T Consensus        23 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~----~va~k~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   96 (290)
T 1t4h_A           23 NDGRFLKFDIEIGRGSFKTVYKGLDTETTV----EVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWES   96 (290)
T ss_dssp             TTSCEEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEGGGSC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             cCceeEEeeeeccCCCCeEEEEeEecCCce----EEEEEEecchhhC--HHHHHHHHHHHHHHHhCCCCCeeeeeeeecc
Confidence            344569999999999999999999887544    4999999765542  3346678889999999999999999999875


Q ss_pred             ----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEc-cCCCEEEc
Q 042539           95 ----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIR-QSGHVTLT  167 (412)
Q Consensus        95 ----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~-~~g~vkL~  167 (412)
                          +..+|+||||+.||+|..++....  .+++..++.++.||+.||.|||++|  |+||||||+|||++ .+|.+||+
T Consensus        97 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~  174 (290)
T 1t4h_A           97 TVKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIG  174 (290)
T ss_dssp             ESSSCEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEEC
T ss_pred             ccCCCceEEEEEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEe
Confidence                356999999999999998887654  4999999999999999999999999  99999999999998 78999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||++....                                                                 ......
T Consensus       175 Dfg~~~~~~-----------------------------------------------------------------~~~~~~  189 (290)
T 1t4h_A          175 DLGLATLKR-----------------------------------------------------------------ASFAKA  189 (290)
T ss_dssp             CTTGGGGCC-----------------------------------------------------------------TTSBEE
T ss_pred             eCCCccccc-----------------------------------------------------------------cccccc
Confidence            999986431                                                                 112234


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHhcCCCC---CCCCChHHHHHHHHhhh
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLMKTPE---FVGQRTALTDLIQRLLE  323 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~~~~~~---~~~~~~~~~dli~~~L~  323 (412)
                      .+||+.|+|||++.+ .++.++|||||||++|+|++|+.||.+... ......+......   ....++++.+||.+||.
T Consensus       190 ~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  268 (290)
T 1t4h_A          190 VIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIR  268 (290)
T ss_dssp             SCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSC
T ss_pred             ccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHcc
Confidence            579999999998875 489999999999999999999999988544 4444444433221   12356889999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      .||.+||    +++++++||||++
T Consensus       269 ~dp~~Rp----s~~ell~h~~f~~  288 (290)
T 1t4h_A          269 QNKDERY----SIKDLLNHAFFQE  288 (290)
T ss_dssp             SSGGGSC----CHHHHHTSGGGC-
T ss_pred             CChhhCC----CHHHHhhCccccc
Confidence            9999999    6999999999985

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=2.5e-49  Score=385.85  Aligned_cols=269  Identities=23%  Similarity=0.385  Sum_probs=226.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH-------------HHHHHHHHHHHHHh
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH-------------EAERRARWEIRVLS   78 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~-------------~~~~~~~~Ei~il~   78 (412)
                      ...+..++|++++.||+|+||.||+|++  +    ++.||||++.........             .....+.+|+.+++
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~--~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   98 (348)
T 2pml_X           25 EKDKYINDYRIIRTLNQGKFNKIILCEK--D----NKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIIT   98 (348)
T ss_dssp             SSCEEETTEEEEEEEECCSSCCEEEEEE--T----TEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHT
T ss_pred             hcccccCceEEEEEEcCCCCeEEEEEEc--C----CceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHH
Confidence            3456678999999999999999999988  2    345999999765432110             01156778999999


Q ss_pred             hcCCCccceeeeeEEeCCeEEEEeeccCCCCchhH------HHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeC
Q 042539           79 RLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVL------RYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDL  151 (412)
Q Consensus        79 ~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~------~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDl  151 (412)
                      .++||||+++++++.+.+.+|+|||||.||+|..+      +.......+++..++.++.||+.||.|||+ +||+||||
T Consensus        99 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl  178 (348)
T 2pml_X           99 DIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDV  178 (348)
T ss_dssp             TCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCC
T ss_pred             hCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCC
Confidence            99999999999999999999999999999999887      554335679999999999999999999999 99999999


Q ss_pred             CCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCC
Q 042539          152 KPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSP  231 (412)
Q Consensus       152 Kp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (412)
                      ||+|||++.+|.+||+|||+++.....                                                     
T Consensus       179 ~p~Nil~~~~~~~kl~dfg~~~~~~~~-----------------------------------------------------  205 (348)
T 2pml_X          179 KPSNILMDKNGRVKLSDFGESEYMVDK-----------------------------------------------------  205 (348)
T ss_dssp             CGGGEEECTTSCEEECCCTTCEECBTT-----------------------------------------------------
T ss_pred             ChHhEEEcCCCcEEEeccccccccccc-----------------------------------------------------
Confidence            999999999999999999999754211                                                     


Q ss_pred             ccccccccCCCCCCcccccCCCCccceeecCC-CCCc-hhhHHHHHHHHHHHhhCCCCCCCCCH-HHHHHHHhcCCCCC-
Q 042539          232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD-GHEF-AVDWWALGILTYEMLYGTTPFRGKNR-KETFRNVLMKTPEF-  307 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~-~~~~-~~DiwSlGvil~ell~g~~Pf~~~~~-~~~~~~i~~~~~~~-  307 (412)
                                  ......||+.|+|||++.+. .++. ++|||||||++|+|++|..||.+.+. .+....+......+ 
T Consensus       206 ------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~  273 (348)
T 2pml_X          206 ------------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYP  273 (348)
T ss_dssp             ------------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCC
T ss_pred             ------------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCc
Confidence                        12245689999999999987 5665 99999999999999999999998776 66777776554433 


Q ss_pred             -------------------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhhcc
Q 042539          308 -------------------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTD  355 (412)
Q Consensus       308 -------------------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~~~  355 (412)
                                         ...+.++.+||.+||+.||.+||    +++++++||||++.+|..+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp----s~~e~l~hp~f~~~~~~~~~~  336 (348)
T 2pml_X          274 LDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERI----TSEDALKHEWLADTNIEDLRE  336 (348)
T ss_dssp             CSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSC----CHHHHHTSGGGTTCCHHHHHH
T ss_pred             cchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCC----CHHHHhcCccccCCCHHHHHH
Confidence                               34678999999999999999999    699999999999999876543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.1e-48  Score=369.75  Aligned_cols=253  Identities=19%  Similarity=0.305  Sum_probs=207.1

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~   94 (412)
                      ..++|++++.||+|+||+||+|++..++.    .||||++++....  ......+.+|+.++..+ +||||+++++++.+
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~--~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~   82 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGC----IYAIKRSKKPLAG--SVDEQNALREVYAHAVLGQHSHVVRYFSAWAE   82 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECCCTT--SHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCc----eEEEEEecccccc--cHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec
Confidence            35789999999999999999999987544    4999999765432  22345677799999999 89999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC----------
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG----------  162 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g----------  162 (412)
                      ++.+|+|||||.|++|..++....  ...+++.+++.++.||+.||.|||++||+||||||+|||++.+|          
T Consensus        83 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~  162 (289)
T 1x8b_A           83 DDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGD  162 (289)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-------------
T ss_pred             CCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccc
Confidence            999999999999999998876542  24589999999999999999999999999999999999998544          


Q ss_pred             ---------CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          163 ---------HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       163 ---------~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                               .+||+|||++.....                                                        
T Consensus       163 ~~~~~~~~~~~kl~Dfg~~~~~~~--------------------------------------------------------  186 (289)
T 1x8b_A          163 EDDWASNKVMFKIGDLGHVTRISS--------------------------------------------------------  186 (289)
T ss_dssp             -------CCCEEECCCTTCEETTC--------------------------------------------------------
T ss_pred             cccccCCceEEEEcccccccccCC--------------------------------------------------------
Confidence                     799999999875421                                                        


Q ss_pred             ccccccCCCCCCcccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCC-CCC
Q 042539          234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEF-VGQ  310 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~-~~~  310 (412)
                                 .....||+.|+|||++.+. .++.++|||||||++|+|++|.+++.....   ...+.... +.. ...
T Consensus       187 -----------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  252 (289)
T 1x8b_A          187 -----------PQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQ---WHEIRQGRLPRIPQVL  252 (289)
T ss_dssp             -----------SCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHH---HHHHHTTCCCCCSSCC
T ss_pred             -----------ccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhH---HHHHHcCCCCCCCccc
Confidence                       1123589999999999876 567899999999999999999988766433   23333322 222 356


Q ss_pred             ChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       311 ~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      ++++.+||.+||..||++||    ++.++++||||.+.
T Consensus       253 ~~~~~~li~~~l~~dp~~Rp----s~~~ll~h~~~~~~  286 (289)
T 1x8b_A          253 SQEFTELLKVMIHPDPERRP----SAMALVKHSVLLSA  286 (289)
T ss_dssp             CHHHHHHHHHHTCSSGGGSC----CHHHHHTCTTC---
T ss_pred             CHHHHHHHHHHhCCCcccCC----CHHHHhhChHhhhh
Confidence            89999999999999999999    69999999999864

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.1e-48  Score=376.37  Aligned_cols=258  Identities=22%  Similarity=0.300  Sum_probs=208.6

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCcccee
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKL   88 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l   88 (412)
                      .....++..++|++++.||+|+||+||+|++.      +..||||++.+....  ......+.+|++++++++||||+++
T Consensus        28 ~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~------~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~   99 (309)
T 3p86_A           28 DGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWH------GSDVAVKILMEQDFH--AERVNEFLREVAIMKRLRHPNIVLF   99 (309)
T ss_dssp             ----CBCCGGGEEEEEEEEECSSEEEEEEEET------TEEEEEEEECCCCCS--HHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CcccccCChhHceeeeEeecCCCeEEEEEEEC------CCcEEEEEecCCCCC--HHHHHHHHHHHHHHHhCCCCCEeeE
Confidence            34466788899999999999999999999874      234999999765532  2345667889999999999999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccCCCEE
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSGHVT  165 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~-~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~g~vk  165 (412)
                      ++++.+.+.+|+|||||.||+|..++..... ..+++..+..++.||+.||+|||++|  |+||||||+|||++.+|.+|
T Consensus       100 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~k  179 (309)
T 3p86_A          100 MGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVK  179 (309)
T ss_dssp             EEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEE
T ss_pred             EEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEE
Confidence            9999999999999999999999888765321 13899999999999999999999999  99999999999999999999


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|||+++.....                                                               ....
T Consensus       180 L~Dfg~a~~~~~~---------------------------------------------------------------~~~~  196 (309)
T 3p86_A          180 VCDFGLSRLKAST---------------------------------------------------------------FLSS  196 (309)
T ss_dssp             ECCCC---------------------------------------------------------------------------
T ss_pred             ECCCCCCcccccc---------------------------------------------------------------cccc
Confidence            9999999743211                                                               1112


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C-CCCCCChHHHHHHHHhh
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P-EFVGQRTALTDLIQRLL  322 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~-~~~~~~~~~~dli~~~L  322 (412)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+....+....  . .....++++.+||.+||
T Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  276 (309)
T 3p86_A          197 KSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCW  276 (309)
T ss_dssp             -----CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHT
T ss_pred             ccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHc
Confidence            34579999999999999999999999999999999999999999998888777664322  2 22356899999999999


Q ss_pred             hhCCCccCCCCCChhhhhc
Q 042539          323 EKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..||.+||    +++++++
T Consensus       277 ~~dP~~Rp----s~~~ll~  291 (309)
T 3p86_A          277 TNEPWKRP----SFATIMD  291 (309)
T ss_dssp             CSSGGGSC----CHHHHHH
T ss_pred             cCChhhCc----CHHHHHH
Confidence            99999999    6888875

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.1e-48  Score=377.04  Aligned_cols=261  Identities=21%  Similarity=0.328  Sum_probs=219.2

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..++..++|++++.||+|+||+||+|++..++. .+..||||+++...   .....+.+.+|+.+++.++||||++++++
T Consensus        43 ~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~  118 (325)
T 3kul_A           43 TREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQ-RDVPVAIKALKAGY---TERQRRDFLSEASIMGQFDHPNIIRLEGV  118 (325)
T ss_dssp             CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTS-CCEEEEEEEECTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ccccChhHeEEeeEEEeCCCcEEEEEEEecCCC-CCceEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            557888999999999999999999999976543 34559999997543   23345677889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+|||||.||+|..++... .+.+++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus       119 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~  197 (325)
T 3kul_A          119 VTRGRLAMIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGL  197 (325)
T ss_dssp             ECGGGCCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSS
T ss_pred             EEeCCccEEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCc
Confidence            99999999999999999999887654 34699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.......                                                            .........+|
T Consensus       198 a~~~~~~~~------------------------------------------------------------~~~~~~~~~~t  217 (325)
T 3kul_A          198 SRVLEDDPD------------------------------------------------------------AAYTTTGGKIP  217 (325)
T ss_dssp             CEECC----------------------------------------------------------------CCEECC---CC
T ss_pred             ccccccCcc------------------------------------------------------------ceeeccCCCCc
Confidence            976532110                                                            00111233568


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  +....+++.+.+||.+||..||.+
T Consensus       218 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  297 (325)
T 3kul_A          218 IRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQ  297 (325)
T ss_dssp             GGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhh
Confidence            89999999999899999999999999999998 999999999888887776543  334467899999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       298 Rp----s~~eil~  306 (325)
T 3kul_A          298 RP----RFSQIVS  306 (325)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5788775

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.2e-49  Score=388.01  Aligned_cols=265  Identities=25%  Similarity=0.414  Sum_probs=202.5

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      .......+++|++++.||+|+||+||+|+++.++.    .||||++.......     ....+|++.++.++||||++++
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~-----~~~~~~~~~l~~l~h~niv~~~   85 (360)
T 3e3p_A           15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGM----SVAIKKVIQDPRFR-----NRELQIMQDLAVLHHPNIVQLQ   85 (360)
T ss_dssp             SHHHHHHHTTEEEC----------CEEEEETTTCC----EEEEEEEECCTTCC-----CHHHHHHHHHHHHCCTTBCCEE
T ss_pred             hhhchhhccceEEEEEEecCCCeEEEEEEECCCCC----EEEEEEEecCcccc-----HHHHHHHHHHHhcCCCCcccHH
Confidence            33456778999999999999999999999987554    49999986543221     2334577888999999999999


Q ss_pred             eeEEeCCe-------EEEEeeccCCCCchhHHH-hhCCCCCCHHHHHHHHHHHHHHHHHHH--HcCceeeeCCCCceEEc
Q 042539           90 GSLETDEF-------LAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIEHLH--NMGIAYRDLKPENILIR  159 (412)
Q Consensus        90 ~~~~~~~~-------~~lv~e~~~gg~L~~~~~-~~~~~~l~~~~~~~~~~qi~~aL~yLH--~~~iiHrDlKp~NiLl~  159 (412)
                      ++|.....       +++|||||.|+.+..+.. ......+++..++.++.|++.||.|||  ++||+||||||+|||++
T Consensus        86 ~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~  165 (360)
T 3e3p_A           86 SYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVN  165 (360)
T ss_dssp             EEEEEECSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEE
T ss_pred             HhhhccccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEe
Confidence            99976433       899999998764433322 223456899999999999999999999  99999999999999999


Q ss_pred             c-CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          160 Q-SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       160 ~-~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      . +|.+||+|||+++....                                                             
T Consensus       166 ~~~~~~kl~Dfg~a~~~~~-------------------------------------------------------------  184 (360)
T 3e3p_A          166 EADGTLKLCDFGSAKKLSP-------------------------------------------------------------  184 (360)
T ss_dssp             TTTTEEEECCCTTCBCCCT-------------------------------------------------------------
T ss_pred             CCCCcEEEeeCCCceecCC-------------------------------------------------------------
Confidence            7 89999999999975421                                                             


Q ss_pred             cCCCCCCcccccCCCCccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C----------
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P----------  305 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~----------  305 (412)
                         .......+||+.|+|||++.+.. ++.++|||||||++|+|++|+.||.+.+....+..+....  +          
T Consensus       185 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T 3e3p_A          185 ---SEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNP  261 (360)
T ss_dssp             ---TSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCT
T ss_pred             ---CCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhccc
Confidence               11223457899999999997755 7999999999999999999999999998887776665310  0          


Q ss_pred             ---------------------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 ---------------------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 ---------------------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                                           .....++++.+||.+||+.||.+||    ++.|+++||||+++.+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~e~l~hp~f~~~~~~  324 (360)
T 3e3p_A          262 SHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERM----KPYEALCHPYFDELHDP  324 (360)
T ss_dssp             TCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSC----CHHHHTTSGGGGGGGCT
T ss_pred             chhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccC----CHHHHhcCccccccCCc
Confidence                                 0011357899999999999999999    79999999999976543

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=3.3e-49  Score=381.52  Aligned_cols=261  Identities=26%  Similarity=0.435  Sum_probs=208.8

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh----hhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH----AKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~----~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..++|++++.||+|+||.||+|+++.++    +.||||++.+....    ........+.+|+++++.++||||++++++
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   83 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTC----KKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNF   83 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCC----cEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeE
Confidence            3578999999999999999999998754    44999999765432    112233457789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC---EEEcc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---VTLTD  168 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~---vkL~D  168 (412)
                      +..++ +|+||||+.|++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|
T Consensus        84 ~~~~~-~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~D  160 (322)
T 2ycf_A           84 FDAED-YYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITD  160 (322)
T ss_dssp             EESSS-EEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred             EcCCc-eEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEcc
Confidence            97665 89999999999998776543  45999999999999999999999999999999999999987765   99999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++.....                                                                ......
T Consensus       161 fg~~~~~~~~----------------------------------------------------------------~~~~~~  176 (322)
T 2ycf_A          161 FGHSKILGET----------------------------------------------------------------SLMRTL  176 (322)
T ss_dssp             CTTCEECCCC----------------------------------------------------------------HHHHHH
T ss_pred             Cccceecccc----------------------------------------------------------------cccccc
Confidence            9999754211                                                                111245


Q ss_pred             ccCCCCccceeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCCCCC-----CCCChHHHHHHH
Q 042539          249 VGTEEYVSPEVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKTPEF-----VGQRTALTDLIQ  319 (412)
Q Consensus       249 ~gt~~Y~APE~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~dli~  319 (412)
                      +||+.|+|||++.   +..++.++|||||||++|+|++|..||.+.... .....+......+     ...++.+.+||.
T Consensus       177 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  256 (322)
T 2ycf_A          177 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVK  256 (322)
T ss_dssp             HSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHH
T ss_pred             cCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHH
Confidence            7999999999974   456789999999999999999999999875433 2333333332222     356889999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      +||..||.+||    +++++++||||++.+|.
T Consensus       257 ~~l~~dP~~Rp----s~~~~l~h~~~~~~~~~  284 (322)
T 2ycf_A          257 KLLVVDPKARF----TTEEALRHPWLQDEDMK  284 (322)
T ss_dssp             HHSCSSTTTSC----CHHHHHTSGGGCCHHHH
T ss_pred             HHcccCHhhCC----CHHHHhhCcCcCCHHHH
Confidence            99999999999    69999999999986653

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1e-48  Score=378.83  Aligned_cols=259  Identities=27%  Similarity=0.349  Sum_probs=213.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC------cc
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP------FL   85 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp------nI   85 (412)
                      ..++..++|++++.||+|+||+||+|.+...   +++.||||+++...     .....+.+|+++++.++|+      +|
T Consensus         8 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~i   79 (339)
T 1z57_A            8 SGDVLSARYEIVDTLGEGAFGKVVECIDHKA---GGRHVAVKIVKNVD-----RYCEAARSEIQVLEHLNTTDPNSTFRC   79 (339)
T ss_dssp             TTCEETTTEEEEEEEEEETTEEEEEEEETTT---TTEEEEEEEECSSH-----HHHHHHHHHHHHHHHHHHHCTTCTTCB
T ss_pred             cCCCccCceEEEEEEecCCCeEEEEEEecCC---CCcEEEEEEEecCC-----chhHHHHHHHHHHHHhhhcCCCCceee
Confidence            4456678999999999999999999988432   34559999996532     2345566799999988755      49


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-----
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-----  160 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-----  160 (412)
                      +++++++.+++.+|+||||| +++|..++.......+++.+++.++.||+.||+|||++||+||||||+|||++.     
T Consensus        80 ~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~  158 (339)
T 1z57_A           80 VQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTE  158 (339)
T ss_dssp             CCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEE
T ss_pred             EeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEecccccc
Confidence            99999999999999999999 888988887766556999999999999999999999999999999999999987     


Q ss_pred             --------------CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccc
Q 042539          161 --------------SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKS  226 (412)
Q Consensus       161 --------------~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (412)
                                    ++.+||+|||+++...                                                  
T Consensus       159 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~--------------------------------------------------  188 (339)
T 1z57_A          159 AYNPKIKRDERTLINPDIKVVDFGSATYDD--------------------------------------------------  188 (339)
T ss_dssp             EEC----CEEEEESCCCEEECCCSSCEETT--------------------------------------------------
T ss_pred             ccCCccccccccccCCCceEeeCcccccCc--------------------------------------------------
Confidence                          6789999999986431                                                  


Q ss_pred             cCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc---C
Q 042539          227 ARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM---K  303 (412)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~---~  303 (412)
                                      ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..+....+..   .
T Consensus       189 ----------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~  252 (339)
T 1z57_A          189 ----------------EHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGP  252 (339)
T ss_dssp             ----------------SCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCS
T ss_pred             ----------------cccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence                            112345799999999999999999999999999999999999999999887665443321   1


Q ss_pred             CCC------------------------------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          304 TPE------------------------------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       304 ~~~------------------------------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+.                                          ....++++.+||.+||..||.+||    +++|+++
T Consensus       253 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp----t~~ell~  328 (339)
T 1z57_A          253 LPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI----TLREALK  328 (339)
T ss_dssp             CCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC----CHHHHTT
T ss_pred             CCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc----CHHHHhc
Confidence            110                                          001135788999999999999999    6999999


Q ss_pred             CCCCCCCC
Q 042539          342 HVFFKGVR  349 (412)
Q Consensus       342 h~ff~~~~  349 (412)
                      ||||+.+.
T Consensus       329 hp~f~~~~  336 (339)
T 1z57_A          329 HPFFDLLK  336 (339)
T ss_dssp             SGGGGGGG
T ss_pred             CHHHHHHh
Confidence            99998643

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.3e-48  Score=373.02  Aligned_cols=262  Identities=27%  Similarity=0.447  Sum_probs=217.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .-..++|++++.||+|+||.||+|++..++.    .||+|++.....    .....+.+|+++++.++||||+++++++.
T Consensus        15 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~----~~aiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   86 (302)
T 2j7t_A           15 LDPNEVWEIVGELGDGAFGKVYKAKNKETGA----LAAAKVIETKSE----EELEDYIVEIEILATCDHPYIVKLLGAYY   86 (302)
T ss_dssp             SCGGGTEEEEEEEECSTTCCEEEEEETTTCC----EEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             cCCccceeecceeccCCCeEEEEEEEcCCCc----EEEEEEecCCCH----HHHHHHHHHHHHHhcCCCCCEeeeeeeee
Confidence            3445789999999999999999999987544    499999965432    22456677999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +++.+|+|||||.|++|..++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++.
T Consensus        87 ~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  165 (302)
T 2j7t_A           87 HDGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSA  165 (302)
T ss_dssp             CC-CEEEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHH
T ss_pred             eCCeEEEEEEeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCc
Confidence            9999999999999999988776533 459999999999999999999999999999999999999999999999999886


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                               .....+||+.
T Consensus       166 ~~~~~~~---------------------------------------------------------------~~~~~~~~~~  182 (302)
T 2j7t_A          166 KNLKTLQ---------------------------------------------------------------KRDSFIGTPY  182 (302)
T ss_dssp             HHHHHHH---------------------------------------------------------------C-----CCGG
T ss_pred             ccccccc---------------------------------------------------------------ccccccCChh
Confidence            5421110                                                               1124578999


Q ss_pred             Cccceeec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhh
Q 042539          254 YVSPEVVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       254 Y~APE~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~  324 (412)
                      |+|||++.     +..++.++|||||||++|+|++|..||...+.......+......    ....+..+.+||.+||..
T Consensus       183 y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  262 (302)
T 2j7t_A          183 WMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDK  262 (302)
T ss_dssp             GCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCS
T ss_pred             hcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHccc
Confidence            99999984     567889999999999999999999999998888777776654432    234578999999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          325 DPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      ||.+||    ++.++++||||+++.|.
T Consensus       263 dp~~Rp----s~~~ll~h~~~~~~~~~  285 (302)
T 2j7t_A          263 NPETRP----SAAQLLEHPFVSSITSN  285 (302)
T ss_dssp             CTTTSC----CHHHHTTSTTTTTCCCC
T ss_pred             ChhhCC----CHHHHhcChHHhhhccc
Confidence            999999    69999999999998875

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-48  Score=379.64  Aligned_cols=258  Identities=27%  Similarity=0.429  Sum_probs=208.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC--Cccceeeee
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH--PFLPKLLGS   91 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h--pnIv~l~~~   91 (412)
                      ++.-++|++++.||+|+||+||+|.+.     +++.||||++.....  .......+.+|+.+++.++|  +||++++++
T Consensus         5 ~~~~~~y~i~~~lG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~   77 (343)
T 3dbq_A            5 SVKGRIYSILKQIGSGGSSKVFQVLNE-----KKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY   77 (343)
T ss_dssp             ESSSCEEEEEEEESCCSSEEEEEEECT-----TSCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred             eeecCEEEEEEEEecCCCeEEEEEEeC-----CCCEEEEEEeecccc--chHHHHHHHHHHHHHHhhhhcCCceEEEeee
Confidence            456678999999999999999999874     244599999976543  23445677889999999986  999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+||| +.+++|..++...  ..+++.+++.++.||+.||.|||++||+||||||+|||++ +|.+||+|||+
T Consensus        78 ~~~~~~~~lv~e-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~  153 (343)
T 3dbq_A           78 EITDQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGI  153 (343)
T ss_dssp             EECSSEEEEEEC-CCSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSS
T ss_pred             EeeCCEEEEEEe-CCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeeccc
Confidence            999999999999 5688998887764  3599999999999999999999999999999999999996 68899999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.+....                                                             ........+||
T Consensus       154 a~~~~~~~-------------------------------------------------------------~~~~~~~~~gt  172 (343)
T 3dbq_A          154 ANQMQPDT-------------------------------------------------------------TSVVKDSQVGT  172 (343)
T ss_dssp             SCCC-------------------------------------------------------------------------CCC
T ss_pred             ccccCccc-------------------------------------------------------------ccccCCCCcCC
Confidence            97653110                                                             01122356899


Q ss_pred             CCCccceeecC-----------CCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcCC--CCCC-CCChHHHH
Q 042539          252 EEYVSPEVVRG-----------DGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKT--PEFV-GQRTALTD  316 (412)
Q Consensus       252 ~~Y~APE~l~~-----------~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~~--~~~~-~~~~~~~d  316 (412)
                      +.|+|||++.+           ..++.++|||||||++|+|++|+.||.+.. ....+..+....  ..++ ..+.++.+
T Consensus       173 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  252 (343)
T 3dbq_A          173 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD  252 (343)
T ss_dssp             CSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHH
T ss_pred             cCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHHH
Confidence            99999999875           567899999999999999999999998743 334445554332  2233 34578999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||.+||+.||.+||    ++.++++||||+.
T Consensus       253 li~~~L~~dp~~Rp----t~~e~l~hp~~~~  279 (343)
T 3dbq_A          253 VLKCCLKRDPKQRI----SIPELLAHPYVQI  279 (343)
T ss_dssp             HHHHHTCSSTTTSC----CHHHHHTSHHHHS
T ss_pred             HHHHHcCCChhHCC----CHHHHHhCccccc
Confidence            99999999999999    7999999999974

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.3e-48  Score=380.80  Aligned_cols=265  Identities=24%  Similarity=0.346  Sum_probs=216.2

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc-----
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF-----   84 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-----   84 (412)
                      .....+..++|++++.||+|+||+||+|.+..++   ++.||+|++++..     .....+.+|+.+++.++|++     
T Consensus        11 ~~~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~---~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~   82 (355)
T 2eu9_A           11 CRIGDWLQERYEIVGNLGEGTFGKVVECLDHARG---KSQVALKIIRNVG-----KYREAARLEINVLKKIKEKDKENKF   82 (355)
T ss_dssp             CCTTCEETTTEEEEEEEEEETTEEEEEEEETTTT---TEEEEEEEECSCH-----HHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred             cccCceecccEEEEEEeeccCCeEEEEEEecCCC---ceEEEEEEEcccc-----cchhHHHHHHHHHHHHhhcCCCCce
Confidence            3445666789999999999999999999987653   2459999996532     23455667999999997655     


Q ss_pred             -cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE-----
Q 042539           85 -LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI-----  158 (412)
Q Consensus        85 -Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl-----  158 (412)
                       |+.+++++...+.+|+||||+ +++|..++.......+++.+++.++.||+.||+|||++||+||||||+|||+     
T Consensus        83 ~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~  161 (355)
T 2eu9_A           83 LCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEF  161 (355)
T ss_dssp             CBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCE
T ss_pred             eEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccc
Confidence             999999999999999999999 5556556555554569999999999999999999999999999999999999     


Q ss_pred             --------------ccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccc
Q 042539          159 --------------RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKT  224 (412)
Q Consensus       159 --------------~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (412)
                                    +.++.+||+|||+++...                                                
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~------------------------------------------------  193 (355)
T 2eu9_A          162 ETLYNEHKSCEEKSVKNTSIRVADFGSATFDH------------------------------------------------  193 (355)
T ss_dssp             EEEECCC-CCCEEEESCCCEEECCCTTCEETT------------------------------------------------
T ss_pred             cccccccccccccccCCCcEEEeecCcccccc------------------------------------------------
Confidence                          667899999999986431                                                


Q ss_pred             cccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--
Q 042539          225 KSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--  302 (412)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--  302 (412)
                                        ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+..  
T Consensus       194 ------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~  255 (355)
T 2eu9_A          194 ------------------EHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKIL  255 (355)
T ss_dssp             ------------------SCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred             ------------------ccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHc
Confidence                              112345799999999999999999999999999999999999999999887665443322  


Q ss_pred             -CCCC------------------C------------------------CCCChHHHHHHHHhhhhCCCccCCCCCChhhh
Q 042539          303 -KTPE------------------F------------------------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEI  339 (412)
Q Consensus       303 -~~~~------------------~------------------------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~  339 (412)
                       ..+.                  +                        ...+.++.+||.+||..||++||    ++.++
T Consensus       256 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp----t~~e~  331 (355)
T 2eu9_A          256 GPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI----TLAEA  331 (355)
T ss_dssp             CCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC----CHHHH
T ss_pred             CCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc----CHHHH
Confidence             1110                  0                        00124788999999999999999    79999


Q ss_pred             hcCCCCCCCCchhh
Q 042539          340 KEHVFFKGVRWDLL  353 (412)
Q Consensus       340 l~h~ff~~~~~~~~  353 (412)
                      ++||||++++|+..
T Consensus       332 l~hp~f~~~~~~~~  345 (355)
T 2eu9_A          332 LLHPFFAGLTPEER  345 (355)
T ss_dssp             TTSGGGGGCCHHHH
T ss_pred             hcChhhcCCChhhc
Confidence            99999999887644

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.6e-48  Score=387.44  Aligned_cols=259  Identities=27%  Similarity=0.426  Sum_probs=210.2

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC--CCccceeeeeE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS--HPFLPKLLGSL   92 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~--hpnIv~l~~~~   92 (412)
                      +.-++|++++.||+|+||+||+|.+..     ++.||||++.+...  .......+.+|+.+|+.++  |+||+++++++
T Consensus        53 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~-----~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~  125 (390)
T 2zmd_A           53 VKGRIYSILKQIGSGGSSKVFQVLNEK-----KQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE  125 (390)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTT-----CCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             ccCCceEEEEEEccCCCeEEEEEEcCC-----CCEEEEEEEecccc--cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEE
Confidence            344569999999999999999998753     34599999976543  2345567888999999997  59999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      ..++.+|+||| +.+++|..++....  .+++.+++.++.||+.||.|||++||+||||||+|||++ +|.+||+|||++
T Consensus       126 ~~~~~~~lv~E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a  201 (390)
T 2zmd_A          126 ITDQYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIA  201 (390)
T ss_dssp             ECSSEEEEEEE-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSS
T ss_pred             ecCCEEEEEEe-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCcc
Confidence            99999999999 66889988877644  589999999999999999999999999999999999995 689999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+....                                                             ......+.+||+
T Consensus       202 ~~~~~~~-------------------------------------------------------------~~~~~~~~~gt~  220 (390)
T 2zmd_A          202 NQMQPDT-------------------------------------------------------------TSVVKDSQVGAV  220 (390)
T ss_dssp             CCC----------------------------------------------------------------------CCSCCCG
T ss_pred             ccccCCC-------------------------------------------------------------ccccCCCCCcCC
Confidence            7652110                                                             011123568999


Q ss_pred             CCccceeecC-----------CCCCchhhHHHHHHHHHHHhhCCCCCCCC-CHHHHHHHHhcCCC--CCC-CCChHHHHH
Q 042539          253 EYVSPEVVRG-----------DGHEFAVDWWALGILTYEMLYGTTPFRGK-NRKETFRNVLMKTP--EFV-GQRTALTDL  317 (412)
Q Consensus       253 ~Y~APE~l~~-----------~~~~~~~DiwSlGvil~ell~g~~Pf~~~-~~~~~~~~i~~~~~--~~~-~~~~~~~dl  317 (412)
                      .|+|||++.+           ..++.++|||||||++|+|++|+.||.+. +....+..++....  .++ ..+.++.+|
T Consensus       221 ~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  300 (390)
T 2zmd_A          221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDV  300 (390)
T ss_dssp             GGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHHHH
T ss_pred             CccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccchHHHHHH
Confidence            9999999976           35789999999999999999999999875 34455566654332  222 346789999


Q ss_pred             HHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          318 IQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      |.+||..||.+||    ++.++++||||+...
T Consensus       301 i~~~L~~dP~~Rp----s~~ell~hp~~~~~~  328 (390)
T 2zmd_A          301 LKCCLKRDPKQRI----SIPELLAHPYVQIQT  328 (390)
T ss_dssp             HHHHTCSSTTTSC----CHHHHHTSHHHHSCC
T ss_pred             HHHHcccChhhCC----CHHHHhhCcCccccC
Confidence            9999999999999    699999999997543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.7e-48  Score=375.18  Aligned_cols=262  Identities=23%  Similarity=0.387  Sum_probs=214.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~   92 (412)
                      ....++|++++.||+|+||.||+|++..++    +.||||++.....     ....+.+|+.+++++ +||||+++++++
T Consensus        20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~~h~~i~~~~~~~   90 (326)
T 2x7f_A           20 RDPAGIFELVELVGNGTYGQVYKGRHVKTG----QLAAIKVMDVTGD-----EEEEIKQEINMLKKYSHHRNIATYYGAF   90 (326)
T ss_dssp             CCCTTTEEEEEEEEEETTEEEEEEEETTTC----CEEEEEEEECCSS-----TTHHHHHHHHHHHHHCCSTTBCCEEEEE
T ss_pred             cCCCCcEEEEEEeccCCCEEEEEEEECCCC----CeEEEEEEecCcc-----cHHHHHHHHHHHHhccCCCCeeeeeeEE
Confidence            344678999999999999999999987654    4499999965432     123566799999999 799999999999


Q ss_pred             Ee------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           93 ET------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        93 ~~------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ..      .+.+|+|||||.||+|..++.......+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||
T Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl  170 (326)
T 2x7f_A           91 IKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKL  170 (326)
T ss_dssp             EECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEE
T ss_pred             eeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEE
Confidence            87      468999999999999999887655456999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||++......                                                               .....
T Consensus       171 ~Dfg~~~~~~~~---------------------------------------------------------------~~~~~  187 (326)
T 2x7f_A          171 VDFGVSAQLDRT---------------------------------------------------------------VGRRN  187 (326)
T ss_dssp             CCCTTTC-------------------------------------------------------------------------
T ss_pred             eeCcCceecCcC---------------------------------------------------------------ccccc
Confidence            999998754211                                                               01123


Q ss_pred             ccccCCCCccceeec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---CCCCCChHHHHHH
Q 042539          247 SFVGTEEYVSPEVVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP---EFVGQRTALTDLI  318 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~dli  318 (412)
                      ..+||+.|+|||++.     +..++.++|||||||++|+|++|..||.+.+.......+.....   .....++.+.+||
T Consensus       188 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  267 (326)
T 2x7f_A          188 TFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFI  267 (326)
T ss_dssp             ---CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHH
T ss_pred             cccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccccCHHHHHHH
Confidence            457999999999987     45678999999999999999999999999887776665554322   2245678999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      .+||..||.+||    +++++++||||++..+.
T Consensus       268 ~~~l~~dp~~Rp----s~~~ll~hp~~~~~~~~  296 (326)
T 2x7f_A          268 ESCLVKNHSQRP----ATEQLMKHPFIRDQPNE  296 (326)
T ss_dssp             HHHCCSSGGGSC----CHHHHHTSHHHHCCTTH
T ss_pred             HHHhccChhhCC----CHHHHhhChHHhhCccc
Confidence            999999999999    69999999999987654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=4.7e-48  Score=377.57  Aligned_cols=271  Identities=24%  Similarity=0.332  Sum_probs=216.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|++++.||+|+||+||+|++..++    +.||||++....   .......+.+|+++++.++||||+++++++.
T Consensus         7 ~~i~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   79 (353)
T 2b9h_A            7 YNISSDFQLKSLLGEGAYGVVCSATHKPTG----EIVAIKKIEPFD---KPLFALRTLREIKILKHFKHENIITIFNIQR   79 (353)
T ss_dssp             CCSCTTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECCCS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECC
T ss_pred             cccccceEEeeEEcCCCCeEEEEEEECCCC----cEEEEEeecccc---cchHHHHHHHHHHHHHhCcCCCcCCeeeeec
Confidence            344689999999999999999999987654    459999996532   2344556778999999999999999999886


Q ss_pred             eC-----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           94 TD-----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        94 ~~-----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      ..     ..+|+||||+. ++|..++..   +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|
T Consensus        80 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~D  155 (353)
T 2b9h_A           80 PDSFENFNEVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCD  155 (353)
T ss_dssp             CSCSTTCCCEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECC
T ss_pred             ccccCccceEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEe
Confidence            54     67999999996 578777654   3499999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++...........                                                     ...........
T Consensus       156 fg~a~~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~  182 (353)
T 2b9h_A          156 FGLARIIDESAADNSE-----------------------------------------------------PTGQQSGMVEF  182 (353)
T ss_dssp             CTTCEECC---------------------------------------------------------------------CCC
T ss_pred             cccccccccccccccC-----------------------------------------------------ccccccchhhc
Confidence            9999865322110000                                                     00011122356


Q ss_pred             ccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CC---------------------
Q 042539          249 VGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM--KT---------------------  304 (412)
Q Consensus       249 ~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~--~~---------------------  304 (412)
                      +||+.|+|||++.+ ..++.++|||||||++|+|++|++||.+.+..+.+..+..  +.                     
T Consensus       183 ~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
T 2b9h_A          183 VATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKS  262 (353)
T ss_dssp             CCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHT
T ss_pred             cccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhc
Confidence            89999999998865 6689999999999999999999999999887665544431  00                     


Q ss_pred             -CC---------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchh
Q 042539          305 -PE---------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       305 -~~---------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                       +.         ++..++++.+||.+||..||++||    +++++++||||+...+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~~~~~~~~~  316 (353)
T 2b9h_A          263 LPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRI----TAKEALEHPYLQTYHDPN  316 (353)
T ss_dssp             SCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGTTTCCTT
T ss_pred             ccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCC----CHHHHhcCccccccCCcc
Confidence             00         135678999999999999999999    699999999999887654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=7.2e-49  Score=388.59  Aligned_cols=256  Identities=23%  Similarity=0.331  Sum_probs=205.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC--------CC
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS--------HP   83 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~--------hp   83 (412)
                      ...+..++|++++.||+|+||+||+|++..++    +.||||++++..     .....+.+|+.+++.++        |+
T Consensus        31 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~~  101 (397)
T 1wak_A           31 IGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGK----KFVAMKVVKSAE-----HYTETALDEIRLLKSVRNSDPNDPNRE  101 (397)
T ss_dssp             TTCEETTTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECSCH-----HHHHHHHHHHHHHHHHHHSCTTCGGGG
T ss_pred             hhhhcCCeEEEEEEeeecCCeeEEEEEecCCC----eEEEEEEEecCC-----cchHHHHHHHHHHHHHhhcCCCCCCcc
Confidence            34555689999999999999999999987744    459999996542     23456677999999996        78


Q ss_pred             ccceeeeeEE----eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEE
Q 042539           84 FLPKLLGSLE----TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILI  158 (412)
Q Consensus        84 nIv~l~~~~~----~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl  158 (412)
                      ||++++++|.    +...+|+||||| +++|...+.......+++.+++.++.||+.||.|||++ ||+||||||+|||+
T Consensus       102 ~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll  180 (397)
T 1wak_A          102 MVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILL  180 (397)
T ss_dssp             GBCCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEE
T ss_pred             eeeeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeE
Confidence            8999999998    556899999999 55555555555445699999999999999999999998 99999999999999


Q ss_pred             ccCC-------------------------------------------------CEEEccccccchhhchhhhhhhcccCC
Q 042539          159 RQSG-------------------------------------------------HVTLTDFDLSRNLVKKTAFEKQSLNNN  189 (412)
Q Consensus       159 ~~~g-------------------------------------------------~vkL~DFGla~~~~~~~~~~~~~~~~~  189 (412)
                      +.+|                                                 .+||+|||+|+....            
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~------------  248 (397)
T 1wak_A          181 SVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK------------  248 (397)
T ss_dssp             CCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB------------
T ss_pred             eccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc------------
Confidence            9776                                                 799999999975421            


Q ss_pred             CCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchh
Q 042539          190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAV  269 (412)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~  269 (412)
                                                                            .....+||+.|+|||++.+..++.++
T Consensus       249 ------------------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~  274 (397)
T 1wak_A          249 ------------------------------------------------------HFTEDIQTRQYRSLEVLIGSGYNTPA  274 (397)
T ss_dssp             ------------------------------------------------------CSCSCCSCGGGCCHHHHHTSCCCTHH
T ss_pred             ------------------------------------------------------cCccCCCCCcccCChhhcCCCCCcHH
Confidence                                                                  12234789999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCCC------HHHHHHHHh---cCCCC----------------------------------
Q 042539          270 DWWALGILTYEMLYGTTPFRGKN------RKETFRNVL---MKTPE----------------------------------  306 (412)
Q Consensus       270 DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~i~---~~~~~----------------------------------  306 (412)
                      |||||||++|+|++|+.||.+.+      .......+.   ...+.                                  
T Consensus       275 DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (397)
T 1wak_A          275 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVL  354 (397)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhh
Confidence            99999999999999999998754      222222221   11100                                  


Q ss_pred             ------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          307 ------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       307 ------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                            ....++.+.+||.+||+.||++||    +++|+++||||++
T Consensus       355 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~e~l~hp~~~~  397 (397)
T 1wak_A          355 VEKYEWSQEEAAGFTDFLLPMLELIPEKRA----TAAECLRHPWLNS  397 (397)
T ss_dssp             HHTSCCCHHHHHHHHHHHGGGGCSSGGGSC----CHHHHHTSGGGGC
T ss_pred             hhhcccchhhHHHHHHHHHHHhccChhhcC----CHHHHhhCccccC
Confidence                  001125688999999999999999    7999999999973

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.3e-48  Score=381.03  Aligned_cols=266  Identities=20%  Similarity=0.267  Sum_probs=223.6

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCc
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPF   84 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpn   84 (412)
                      +...+++..++|++++.||+|+||+||+|++..++.   .....||||+++...   .......+.+|+++++.+ +|||
T Consensus        60 ~~~~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpn  136 (382)
T 3tt0_A           60 EDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKN  136 (382)
T ss_dssp             CCTTTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             cCcccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---CHHHHHHHHHHHHHHHHhcCCch
Confidence            344567888999999999999999999999865443   234569999997653   234456778899999999 8999


Q ss_pred             cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeee
Q 042539           85 LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND--------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRD  150 (412)
Q Consensus        85 Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~--------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrD  150 (412)
                      |+++++++.+++.+|+|||||.||+|..++.....              ..+++.+++.++.||+.||.|||++||+|||
T Consensus       137 Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~D  216 (382)
T 3tt0_A          137 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRD  216 (382)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             hhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCC
Confidence            99999999999999999999999999998876542              3599999999999999999999999999999


Q ss_pred             CCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCC
Q 042539          151 LKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVS  230 (412)
Q Consensus       151 lKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (412)
                      |||+|||++.+|.+||+|||+|+......                                                   
T Consensus       217 lkp~NIll~~~~~~kL~DFG~a~~~~~~~---------------------------------------------------  245 (382)
T 3tt0_A          217 LAARNVLVTEDNVMKIADFGLARDIHHID---------------------------------------------------  245 (382)
T ss_dssp             CCGGGEEECTTCCEEECSCSCCCCSSCCC---------------------------------------------------
T ss_pred             CCcceEEEcCCCcEEEcccCccccccccc---------------------------------------------------
Confidence            99999999999999999999997542110                                                   


Q ss_pred             CccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCC
Q 042539          231 PVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEF  307 (412)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~  307 (412)
                                .........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ...
T Consensus       246 ----------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~  315 (382)
T 3tt0_A          246 ----------YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKP  315 (382)
T ss_dssp             ----------TTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCC
T ss_pred             ----------ccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCC
Confidence                      0112233467889999999999999999999999999999999 999999999888877776543  223


Q ss_pred             CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       308 ~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ...++++.+||.+||..||++||    ++.+++++
T Consensus       316 ~~~~~~l~~li~~~l~~dP~~Rp----s~~ell~~  346 (382)
T 3tt0_A          316 SNCTNELYMMMRDCWHAVPSQRP----TFKQLVED  346 (382)
T ss_dssp             SSCCHHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCChhhCc----CHHHHHHH
Confidence            45689999999999999999999    68888873

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.4e-48  Score=377.01  Aligned_cols=262  Identities=26%  Similarity=0.349  Sum_probs=215.2

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc---CCCccceeeeeE
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL---SHPFLPKLLGSL   92 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l---~hpnIv~l~~~~   92 (412)
                      ..++|++++.||+|+||+||+|++...   +++.||+|+++......  .....+.+|+.+++.+   +||||+++++++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~   83 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKN---GGRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVC   83 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTT---TTEEEEEEEEEEEBCTT--SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCC---CCEEEEEEEeccCcccc--cCCchhhHHHHHHHhhhccCCCCeEeeeeee
Confidence            348999999999999999999998532   34459999997543211  1112334577777666   899999999998


Q ss_pred             E-----eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           93 E-----TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        93 ~-----~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      .     ....+++||||+. |+|..++.......+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+
T Consensus        84 ~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~  162 (326)
T 1blx_A           84 TVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLA  162 (326)
T ss_dssp             EEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             eecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEe
Confidence            7     4568999999997 588888877665669999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++.....                                                                .....
T Consensus       163 Dfg~~~~~~~~----------------------------------------------------------------~~~~~  178 (326)
T 1blx_A          163 DFGLARIYSFQ----------------------------------------------------------------MALTS  178 (326)
T ss_dssp             SCCSCCCCCGG----------------------------------------------------------------GGGCC
T ss_pred             cCcccccccCC----------------------------------------------------------------CCccc
Confidence            99998754211                                                                11224


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC--------------------
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP--------------------  305 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~--------------------  305 (412)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|++||.+.+..+.+..++..  .+                    
T Consensus       179 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (326)
T 1blx_A          179 VVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKS  258 (326)
T ss_dssp             CCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCC
T ss_pred             cccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccC
Confidence            57899999999999999999999999999999999999999999888777666531  00                    


Q ss_pred             ------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 ------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 ------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                            .....+..+.+||.+||..||.+||    ++.++++||||+++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~e~l~hp~~~~~~~~  306 (326)
T 1blx_A          259 AQPIEKFVTDIDELGKDLLLKCLTFNPAKRI----SAYSALSHPYFQDLERC  306 (326)
T ss_dssp             CCCGGGTCCSCCHHHHHHHHHHSCSSTTTSC----CHHHHHTSGGGTTCCCC
T ss_pred             cchhhhccccCCHHHHHHHHHHcCCCcccCC----CHHHHhcCccccccchh
Confidence                  0134678899999999999999999    69999999999987764

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.7e-48  Score=376.37  Aligned_cols=279  Identities=19%  Similarity=0.283  Sum_probs=203.8

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ....+..++|++++.||+|+||+||+|++...+. ....||||+++......  ...+.+.+|++++++++||||+++++
T Consensus        16 ~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~   92 (323)
T 3qup_A           16 EDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDG-SFVKVAVKMLKADIIAS--SDIEEFLREAACMKEFDHPHVAKLVG   92 (323)
T ss_dssp             CTTBCC---CEEEEEEEEETTEEEEEEEC--------CEEEEEEC------C--HHHHHHHHHHHHHTTCCCTTBCCCCE
T ss_pred             hhcccChhHeEEeceecccCCeEEEEEEEcccCC-cceeEEEEEecccccCH--HHHHHHHHHHHHHHHCCCCceehhhc
Confidence            3456777899999999999999999999876543 22359999997654322  33567788999999999999999999


Q ss_pred             eEEeCCeE------EEEeeccCCCCchhHHHhhCC----CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc
Q 042539           91 SLETDEFL------AWAVPYCPGGDLNVLRYKQND----RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ  160 (412)
Q Consensus        91 ~~~~~~~~------~lv~e~~~gg~L~~~~~~~~~----~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~  160 (412)
                      ++......      ++|||||.||+|..++.....    ..+++.++..++.||+.||.|||++||+||||||+|||++.
T Consensus        93 ~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~  172 (323)
T 3qup_A           93 VSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAE  172 (323)
T ss_dssp             EEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECT
T ss_pred             eeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcC
Confidence            99877654      999999999999888765431    24899999999999999999999999999999999999999


Q ss_pred             CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccC
Q 042539          161 SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD  240 (412)
Q Consensus       161 ~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
                      +|.+||+|||+++.......                                                            
T Consensus       173 ~~~~kl~Dfg~a~~~~~~~~------------------------------------------------------------  192 (323)
T 3qup_A          173 DMTVCVADFGLSRKIYSGDY------------------------------------------------------------  192 (323)
T ss_dssp             TSCEEECCCCC---------------------------------------------------------------------
T ss_pred             CCCEEEeecccccccccccc------------------------------------------------------------
Confidence            99999999999976532110                                                            


Q ss_pred             CCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHH
Q 042539          241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDL  317 (412)
Q Consensus       241 ~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dl  317 (412)
                       ........+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ......++++.+|
T Consensus       193 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  271 (323)
T 3qup_A          193 -YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPECMEEVYDL  271 (323)
T ss_dssp             ---------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             -ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCCCCCccCHHHHHH
Confidence             011123356889999999999999999999999999999999 999999988888877776543  3345678999999


Q ss_pred             HHHhhhhCCCccCCCC---CChhhhhcCCCCCCCCchhh
Q 042539          318 IQRLLEKDPVKRLGYL---RGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       318 i~~~L~~dP~~R~~~~---~~~~e~l~h~ff~~~~~~~~  353 (412)
                      |.+||..||.+||++.   ...++++.|+|+....++-+
T Consensus       272 i~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~~pl  310 (323)
T 3qup_A          272 MYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQDPL  310 (323)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHHHHHHHHC-----------
T ss_pred             HHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCCCCC
Confidence            9999999999999320   11788999999987655433

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.2e-48  Score=371.38  Aligned_cols=261  Identities=28%  Similarity=0.455  Sum_probs=221.2

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .....++|++++.||+|+||.||+|+++.++.    .||+|++.+.....  .....+.+|++++++++||||+++++++
T Consensus        17 ~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~----~valK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~   90 (287)
T 2wei_A           17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQ----EYAVKVINKASAKN--KDTSTILREVELLKKLDHPNIMKLFEIL   90 (287)
T ss_dssp             THHHHHHEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEGGGBSS--SCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             HHHHhhcceeeEEEcCCCCEEEEEEEEcCCCc----EEEEEEecccccch--HHHHHHHHHHHHHHhccCCCccEEEEEE
Confidence            34456899999999999999999999876544    49999997654322  2345677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC---CEEEccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG---HVTLTDF  169 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g---~vkL~DF  169 (412)
                      .+.+.+|+||||+.|++|..++....  .+++.++..++.||+.||.|||++||+||||||+||+++.++   .+||+||
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Df  168 (287)
T 2wei_A           91 EDSSSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDF  168 (287)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECST
T ss_pred             eCCCeEEEEEEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEecc
Confidence            99999999999999999987776554  499999999999999999999999999999999999997654   6999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++....                                                                ........
T Consensus       169 g~~~~~~~----------------------------------------------------------------~~~~~~~~  184 (287)
T 2wei_A          169 GLSTCFQQ----------------------------------------------------------------NTKMKDRI  184 (287)
T ss_dssp             TGGGTBCC----------------------------------------------------------------CSSCSCHH
T ss_pred             CcceeecC----------------------------------------------------------------CCcccccc
Confidence            99875421                                                                11122446


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----CCCCChHHHHHHHHhhhh
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----FVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~~~~dli~~~L~~  324 (412)
                      ||+.|+|||++.+. ++.++|||||||++|+|++|..||.+.+..+....+......     +...++++.+||.+||..
T Consensus       185 ~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  263 (287)
T 2wei_A          185 GTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTF  263 (287)
T ss_dssp             HHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCS
T ss_pred             CcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHccc
Confidence            89999999998765 889999999999999999999999999888887777665432     245789999999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          325 DPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                      ||.+||    ++.++++||||++..+
T Consensus       264 dp~~Rp----s~~ell~hp~~~~~~~  285 (287)
T 2wei_A          264 HPSLRI----TATQCLEHPWIQKYSS  285 (287)
T ss_dssp             SGGGSC----CHHHHHHSHHHHHHCC
T ss_pred             ChhhCc----CHHHHhcCHHHhcccc
Confidence            999999    6999999999986554

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.9e-48  Score=385.54  Aligned_cols=257  Identities=27%  Similarity=0.384  Sum_probs=210.9

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CC-----ccce
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HP-----FLPK   87 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hp-----nIv~   87 (412)
                      +...++|++++.||+|+||+||+|++..++    +.||||+++...     .....+.+|+.+++.+. |+     +|++
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~----~~vaiK~~~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~iv~  120 (382)
T 2vx3_A           50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQ----EWVAIKIIKNKK-----AFLNQAQIEVRLLELMNKHDTEMKYYIVH  120 (382)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTT----EEEEEEEECSSH-----HHHHHHHHHHHHHHHHHHCSSGGGGGBCC
T ss_pred             CEeeeeEEEEEEEeecCCEEEEEEEEcCCC----cEEEEEEEeccH-----HHHHHHHHHHHHHHHHHhcccccceeEEE
Confidence            444689999999999999999999987754    459999997542     23445666888888885 55     4999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH--HcCceeeeCCCCceEEc--cCCC
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH--NMGIAYRDLKPENILIR--QSGH  163 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH--~~~iiHrDlKp~NiLl~--~~g~  163 (412)
                      +++++...+.+|+||||+.| +|..++.......+++..++.++.||+.||.|||  +.||+||||||+|||++  .++.
T Consensus       121 ~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~  199 (382)
T 2vx3_A          121 LKRHFMFRNHLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSA  199 (382)
T ss_dssp             EEEEEEETTEEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCC
T ss_pred             eeeeeccCCceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCc
Confidence            99999999999999999964 8888877765556999999999999999999999  57999999999999995  4788


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+|+...                                                                  .
T Consensus       200 ~kL~DFG~a~~~~------------------------------------------------------------------~  213 (382)
T 2vx3_A          200 IKIVDFGSSCQLG------------------------------------------------------------------Q  213 (382)
T ss_dssp             EEECCCTTCEETT------------------------------------------------------------------C
T ss_pred             EEEEeccCceecc------------------------------------------------------------------c
Confidence            9999999997542                                                                  1


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC----------------
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----------------  307 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~----------------  307 (412)
                      .....+||+.|+|||++.+..++.++|||||||++|||++|++||.+.+..+.+..+.......                
T Consensus       214 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  293 (382)
T 2vx3_A          214 RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFE  293 (382)
T ss_dssp             CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEE
T ss_pred             ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHH
Confidence            1234579999999999999999999999999999999999999999998887776665311000                


Q ss_pred             --C-------------------C----------------------------CChHHHHHHHHhhhhCCCccCCCCCChhh
Q 042539          308 --V-------------------G----------------------------QRTALTDLIQRLLEKDPVKRLGYLRGACE  338 (412)
Q Consensus       308 --~-------------------~----------------------------~~~~~~dli~~~L~~dP~~R~~~~~~~~e  338 (412)
                        +                   .                            .++++.+||.+||+.||++||    +++|
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rp----ta~e  369 (382)
T 2vx3_A          294 KLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRI----QPYY  369 (382)
T ss_dssp             ECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSC----CHHH
T ss_pred             hccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCC----CHHH
Confidence              0                   0                            003789999999999999999    7999


Q ss_pred             hhcCCCCCCCCc
Q 042539          339 IKEHVFFKGVRW  350 (412)
Q Consensus       339 ~l~h~ff~~~~~  350 (412)
                      +++||||++..+
T Consensus       370 ~L~hp~f~~~~~  381 (382)
T 2vx3_A          370 ALQHSFFKKTAD  381 (382)
T ss_dssp             HTTSGGGCC---
T ss_pred             HhcCcccccCCC
Confidence            999999987554

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=3.2e-50  Score=397.54  Aligned_cols=250  Identities=18%  Similarity=0.191  Sum_probs=199.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHH---HHhhcCCCccceee----
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR---VLSRLSHPFLPKLL----   89 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~---il~~l~hpnIv~l~----   89 (412)
                      .++|++++.||+|+||+||+|+++.++    +.||||++.+..... ....+.+.+|+.   +++.++|||||+++    
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~----~~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~  146 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETG----ESFEVHVPYFTERPP-SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFI  146 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCC----CEEEEEEEEECC-CC-TTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBC
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCC----cEEEEEEEeeccccc-hHHHHHHHHHHHHHHhccccCCHHHHHHHhhhh
Confidence            578999999999999999999987644    459999997654322 234566778994   55555799999998    


Q ss_pred             ---eeEEeCC-----------------eEEEEeeccCCCCchhHHHhhCCCCCCH-------HHHHHHHHHHHHHHHHHH
Q 042539           90 ---GSLETDE-----------------FLAWAVPYCPGGDLNVLRYKQNDRVFSP-------SVIRFYLSEIICAIEHLH  142 (412)
Q Consensus        90 ---~~~~~~~-----------------~~~lv~e~~~gg~L~~~~~~~~~~~l~~-------~~~~~~~~qi~~aL~yLH  142 (412)
                         +++.+.+                 ..|+||||| +|+|..++.....  +++       ..+..++.||+.||+|||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~--~~~~~~~l~~~~~~~i~~qi~~aL~~LH  223 (377)
T 3byv_A          147 FPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLS--HSSTHKSLVHHARLQLTLQVIRLLASLH  223 (377)
T ss_dssp             CCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccc--cccccccccHHHHHHHHHHHHHHHHHHH
Confidence               6666553                 389999999 6899888776432  444       788889999999999999


Q ss_pred             HcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccc
Q 042539          143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLK  222 (412)
Q Consensus       143 ~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (412)
                      ++||+||||||+|||++.+|.+||+|||+|+...                                              
T Consensus       224 ~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~----------------------------------------------  257 (377)
T 3byv_A          224 HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG----------------------------------------------  257 (377)
T ss_dssp             HTTEECSCCCGGGEEECTTCCEEECCGGGCEETT----------------------------------------------
T ss_pred             hCCeecCCCCHHHEEEcCCCCEEEEechhheecC----------------------------------------------
Confidence            9999999999999999999999999999997431                                              


Q ss_pred             cccccCCCCccccccccCCCCCCcccccCCCCccceeecCC-----------CCCchhhHHHHHHHHHHHhhCCCCCCCC
Q 042539          223 KTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD-----------GHEFAVDWWALGILTYEMLYGTTPFRGK  291 (412)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~-----------~~~~~~DiwSlGvil~ell~g~~Pf~~~  291 (412)
                                          ....+.+| +.|+|||++.+.           .++.++|||||||++|||++|+.||.+.
T Consensus       258 --------------------~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~  316 (377)
T 3byv_A          258 --------------------ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKD  316 (377)
T ss_dssp             --------------------CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             --------------------CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccc
Confidence                                11234578 999999999987           7899999999999999999999999886


Q ss_pred             CHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          292 NRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      +.......+..   .....++++.+||.+||+.||++||    ++.++++||||+++
T Consensus       317 ~~~~~~~~~~~---~~~~~~~~~~~li~~~L~~dp~~Rp----t~~e~l~hp~f~~~  366 (377)
T 3byv_A          317 AALGGSEWIFR---SCKNIPQPVRALLEGFLRYPKEDRL----LPLQAMETPEYEQL  366 (377)
T ss_dssp             ---CCSGGGGS---SCCCCCHHHHHHHHHHTCSSGGGCC----CHHHHHTSHHHHHH
T ss_pred             ccccchhhhhh---hccCCCHHHHHHHHHHcCCCchhCC----CHHHHhhChHHHHH
Confidence            65444433332   2356789999999999999999999    69999999999864

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2.3e-48  Score=367.20  Aligned_cols=259  Identities=24%  Similarity=0.378  Sum_probs=219.0

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      ..++|++++.||+|+||.||+|+++.++    +.||+|++......  ....+.+.+|+.++++++||||+++++++.+ 
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   77 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRKSDG----KILVWKELDYGSMT--EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR   77 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTC----CEEEEEEEECTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEG
T ss_pred             chhheeeehhccCCCCcEEEEEEECCCC----cEEEEEEEEcccCC--HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecC
Confidence            5789999999999999999999998754    44999999765532  3345678889999999999999999998854 


Q ss_pred             -CCeEEEEeeccCCCCchhHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHcC-----ceeeeCCCCceEEccCCCEEE
Q 042539           95 -DEFLAWAVPYCPGGDLNVLRYKQN--DRVFSPSVIRFYLSEIICAIEHLHNMG-----IAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        95 -~~~~~lv~e~~~gg~L~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~yLH~~~-----iiHrDlKp~NiLl~~~g~vkL  166 (412)
                       +..+|+|||||.|++|..++....  ...+++..+..++.|++.||+|||++|     |+||||||+|||++.+|.+||
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl  157 (279)
T 2w5a_A           78 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKL  157 (279)
T ss_dssp             GGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEE
T ss_pred             CCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEE
Confidence             578999999999999988876532  334899999999999999999999999     999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.......                                                               ...
T Consensus       158 ~dfg~~~~~~~~~~---------------------------------------------------------------~~~  174 (279)
T 2w5a_A          158 GDFGLARILNHDTS---------------------------------------------------------------FAK  174 (279)
T ss_dssp             CCCCHHHHC---CH---------------------------------------------------------------HHH
T ss_pred             ecCchheeeccccc---------------------------------------------------------------ccc
Confidence            99999876532110                                                               112


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-CC-CCCChHHHHHHHHhhhh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-EF-VGQRTALTDLIQRLLEK  324 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-~~-~~~~~~~~dli~~~L~~  324 (412)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+....+..... .. ...+.++.++|.+||..
T Consensus       175 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~  254 (279)
T 2w5a_A          175 TFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNL  254 (279)
T ss_dssp             HHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             ccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccCCcccCHHHHHHHHHHcCC
Confidence            34689999999999999999999999999999999999999999888877777765443 22 35678999999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCCCC
Q 042539          325 DPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||.+||    ++.++++|+|+.+
T Consensus       255 ~p~~Rp----s~~~ll~~~~~~~  273 (279)
T 2w5a_A          255 KDYHRP----SVEEILENPLILE  273 (279)
T ss_dssp             SGGGSC----CHHHHHTSTTCCG
T ss_pred             CcccCC----CHHHHHhChhhhh
Confidence            999999    6999999999975

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-48  Score=377.40  Aligned_cols=255  Identities=27%  Similarity=0.408  Sum_probs=208.4

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+.-++|++++.||+|+||+||+|++..++.    .||||++.......   ....+.+|+++++.++||||+++++++.
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~   77 (319)
T 4euu_A            5 STSNHLWLLSDILGQGATANVFRGRHKKTGD----LFAIKVFNNISFLR---PVDVQMREFEVLKKLNHKNIVKLFAIEE   77 (319)
T ss_dssp             ECSSEEEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEECGGGGGS---CHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             cCCCCCEEEEEEecCCCCeEEEEEEECCCCc----EEEEEEeccccccc---hHHHHHHHHHHHHhcCCCCcceEEEEee
Confidence            3456899999999999999999999987544    49999997654322   2345567999999999999999999998


Q ss_pred             eCC--eEEEEeeccCCCCchhHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE----ccCCCEEE
Q 042539           94 TDE--FLAWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI----RQSGHVTL  166 (412)
Q Consensus        94 ~~~--~~~lv~e~~~gg~L~~~~~~~~~-~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl----~~~g~vkL  166 (412)
                      ...  .+|+|||||.|++|..++..... ..+++.+++.++.||+.||.|||++||+||||||+|||+    +.++.+||
T Consensus        78 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL  157 (319)
T 4euu_A           78 ETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKL  157 (319)
T ss_dssp             CTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEE
T ss_pred             cCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEE
Confidence            765  88999999999999988775432 238999999999999999999999999999999999999    77788999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++....                                                                .....
T Consensus       158 ~Dfg~a~~~~~----------------------------------------------------------------~~~~~  173 (319)
T 4euu_A          158 TDFGAARELED----------------------------------------------------------------DEQFV  173 (319)
T ss_dssp             CCCTTCEECCT----------------------------------------------------------------TCCBC
T ss_pred             ccCCCceecCC----------------------------------------------------------------CCcee
Confidence            99999975421                                                                11223


Q ss_pred             ccccCCCCccceeec--------CCCCCchhhHHHHHHHHHHHhhCCCCCCCCC----HHHHHHHHhcCCCC--------
Q 042539          247 SFVGTEEYVSPEVVR--------GDGHEFAVDWWALGILTYEMLYGTTPFRGKN----RKETFRNVLMKTPE--------  306 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~--------~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~----~~~~~~~i~~~~~~--------  306 (412)
                      +.+||+.|+|||++.        +..++.++|||||||++|||++|+.||....    ..+.+.+++...+.        
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  253 (319)
T 4euu_A          174 SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQK  253 (319)
T ss_dssp             CCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEEC
T ss_pred             ecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhc
Confidence            457999999999986        5678999999999999999999999997432    34455555543321        


Q ss_pred             -----------CC---C----CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCC
Q 042539          307 -----------FV---G----QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHV  343 (412)
Q Consensus       307 -----------~~---~----~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~  343 (412)
                                 ++   .    .+..+.+||.+||+.||++|+    +++|+++||
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~----s~~ell~h~  304 (319)
T 4euu_A          254 AENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCW----GFDQFFAET  304 (319)
T ss_dssp             STTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSC----CHHHHHHHH
T ss_pred             ccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhc----cHHHhhhcc
Confidence                       11   1    135788999999999999999    699999987

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.3e-48  Score=373.68  Aligned_cols=261  Identities=25%  Similarity=0.350  Sum_probs=208.6

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE--
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE--   93 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~--   93 (412)
                      ..++|++++.||+|+||.||+|.+..++    +.||+|++....    ....+.+.+|+++++.++||||+++++++.  
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   80 (320)
T 2i6l_A            9 LGSRYMDLKPLGCGGNGLVFSAVDNDCD----KRVAIKKIVLTD----PQSVKHALREIKIIRRLDHDNIVKVFEILGPS   80 (320)
T ss_dssp             ETTTEEEEEECC-----CEEEEEETTTT----EEEEEEEEECCS----HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTT
T ss_pred             cCCceeEEEEeccCCCeEEEEEEECCCC----eEEEEEEEecCC----hHHHHHHHHHHHHHHhcCCCCeeEEEEecccc
Confidence            3579999999999999999999998754    459999986543    234566778999999999999999999873  


Q ss_pred             ------------eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc-c
Q 042539           94 ------------TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR-Q  160 (412)
Q Consensus        94 ------------~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~-~  160 (412)
                                  +...+|+||||+. |+|..++..   +.+++..++.++.||+.||+|||++||+||||||+|||++ .
T Consensus        81 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~  156 (320)
T 2i6l_A           81 GSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTE  156 (320)
T ss_dssp             SCBCCC----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETT
T ss_pred             ccccccccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCC
Confidence                        3468999999997 588777643   4599999999999999999999999999999999999997 5


Q ss_pred             CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccC
Q 042539          161 SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD  240 (412)
Q Consensus       161 ~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
                      ++.+||+|||+++......                                                            .
T Consensus       157 ~~~~kl~Dfg~~~~~~~~~------------------------------------------------------------~  176 (320)
T 2i6l_A          157 DLVLKIGDFGLARIMDPHY------------------------------------------------------------S  176 (320)
T ss_dssp             TTEEEECCCTTCBCC-----------------------------------------------------------------
T ss_pred             CCeEEEccCccccccCCCc------------------------------------------------------------c
Confidence            6799999999997642110                                                            0


Q ss_pred             CCCCCcccccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-------------
Q 042539          241 NGERSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-------------  306 (412)
Q Consensus       241 ~~~~~~~~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-------------  306 (412)
                      .........||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+....+....+.             
T Consensus       177 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (320)
T 2i6l_A          177 HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVI  256 (320)
T ss_dssp             ---CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTS
T ss_pred             cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcC
Confidence            1112234568999999999876 66899999999999999999999999998887776666543211             


Q ss_pred             ------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchh
Q 042539          307 ------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       307 ------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                                        .+..+.++.+||.+||+.||.+||    +++++++||||+..+|..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~~~~~~~p~  316 (320)
T 2i6l_A          257 PVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRL----TAEEALSHPYMSIYSFPM  316 (320)
T ss_dssp             CHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSC----CHHHHHTSHHHHTTCC--
T ss_pred             cccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccC----CHHHHhCCcccccccCcc
Confidence                              135688999999999999999999    799999999999887754

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=389.72  Aligned_cols=263  Identities=24%  Similarity=0.329  Sum_probs=193.5

Q ss_pred             cCcee-eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--
Q 042539           18 DNLKA-LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--   94 (412)
Q Consensus        18 ~~y~~-~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--   94 (412)
                      +.|.+ .++||+|+||+||+|+++...  +++.||||++......      ..+.+|+.+|+.++||||+++++++..  
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~--~~~~vaiK~~~~~~~~------~~~~~E~~~l~~l~hpniv~~~~~~~~~~   91 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGK--DDKDYALKQIEGTGIS------MSACREIALLRELKHPNVISLQKVFLSHA   91 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSS--CCCCEEEEECSSSSCC------HHHHHHHHHHHHCCCTTBCCCCEEEEETT
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCC--CCeEEEEEEECCCCCC------HHHHHHHHHHHhcCCCCeeeEeeEEecCC
Confidence            45776 458999999999999976432  3455999999765331      245679999999999999999999954  


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhC-------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE----ccCCC
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQN-------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI----RQSGH  163 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~-------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl----~~~g~  163 (412)
                      +..+|+|||||.| +|..++....       ...+++..++.++.||+.||.|||++||+||||||+|||+    +.++.
T Consensus        92 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~  170 (405)
T 3rgf_A           92 DRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGR  170 (405)
T ss_dssp             TTEEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTC
T ss_pred             CCeEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCc
Confidence            6789999999975 6655544221       1249999999999999999999999999999999999999    67799


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+|+.+....                                                            ....
T Consensus       171 ~kl~Dfg~a~~~~~~~------------------------------------------------------------~~~~  190 (405)
T 3rgf_A          171 VKIADMGFARLFNSPL------------------------------------------------------------KPLA  190 (405)
T ss_dssp             EEECCTTCCC----------------------------------------------------------------------
T ss_pred             EEEEECCCceecCCCC------------------------------------------------------------cccc
Confidence            9999999997653210                                                            0112


Q ss_pred             CCcccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHH---------HHHHHHhc--CCCC-----
Q 042539          244 RSNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRK---------ETFRNVLM--KTPE-----  306 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~---------~~~~~i~~--~~~~-----  306 (412)
                      .....+||+.|+|||++.+. .++.++|||||||++|+|++|++||.+.+..         +.+..+..  +.+.     
T Consensus       191 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~  270 (405)
T 3rgf_A          191 DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWE  270 (405)
T ss_dssp             ------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCG
T ss_pred             cCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcc
Confidence            23356899999999999885 4899999999999999999999999876542         33333321  1110     


Q ss_pred             --------------------------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          307 --------------------------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       307 --------------------------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                                                      ....++.+.+||.+||+.||.+||    +++|+++||||.+..+...
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~----ta~e~L~hp~f~~~~~~~~  345 (405)
T 3rgf_A          271 DIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRI----TSEQAMQDPYFLEDPLPTS  345 (405)
T ss_dssp             GGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGTSSSCCCS
T ss_pred             hhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCC----CHHHHhcChhhccCCCCcc
Confidence                                            011267899999999999999999    7999999999998776543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=7.8e-48  Score=368.35  Aligned_cols=254  Identities=27%  Similarity=0.406  Sum_probs=218.3

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      -+.|++++.||+|+||.||+|.+..++    +.||||++......   .....+.+|+.+++.++||||+++++++.++.
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQ----KVVAIKIIDLEEAE---DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT   93 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTC----CEEEEEEEETTTCS---TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCC----cEEEEEEecccccH---HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC
Confidence            367999999999999999999987654    44999999765432   23456778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|+||||+.|++|..++..   +.+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+|||++....
T Consensus        94 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  170 (303)
T 3a7i_A           94 KLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT  170 (303)
T ss_dssp             EEEEEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECB
T ss_pred             eEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecC
Confidence            99999999999999887653   359999999999999999999999999999999999999999999999999997542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               .......+||+.|+|
T Consensus       171 ~~---------------------------------------------------------------~~~~~~~~~~~~y~a  187 (303)
T 3a7i_A          171 DT---------------------------------------------------------------QIKRNTFVGTPFWMA  187 (303)
T ss_dssp             TT---------------------------------------------------------------BCCBCCCCSCGGGCC
T ss_pred             cc---------------------------------------------------------------ccccCccCCCcCccC
Confidence            11                                                               111234579999999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      ||++.+..++.++|||||||++|+|++|..||...+.......+....+.  ....+..+.+||.+||..||.+||    
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  263 (303)
T 3a7i_A          188 PEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRP----  263 (303)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSC----
T ss_pred             HHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCc----
Confidence            99999999999999999999999999999999998877776666544322  235678999999999999999999    


Q ss_pred             ChhhhhcCCCCCC
Q 042539          335 GACEIKEHVFFKG  347 (412)
Q Consensus       335 ~~~e~l~h~ff~~  347 (412)
                      ++.++++|+||..
T Consensus       264 s~~~ll~~~~~~~  276 (303)
T 3a7i_A          264 TAKELLKHKFILR  276 (303)
T ss_dssp             CHHHHTTCHHHHH
T ss_pred             CHHHHhhChhhhc
Confidence            6999999999964

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.7e-48  Score=370.95  Aligned_cols=260  Identities=25%  Similarity=0.385  Sum_probs=214.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|++++.||+|+||.||+|.+..++.    .||||++.....      ...+.+|+.+++.++||||+++++++.
T Consensus        25 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~------~~~~~~e~~~l~~l~h~~i~~~~~~~~   94 (314)
T 3com_A           25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQ----IVAIKQVPVESD------LQEIIKEISIMQQCDSPHVVKYYGSYF   94 (314)
T ss_dssp             -----CEEEEEECC----CEEEEEEETTTCC----EEEEEEEETTSC------CHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             hcchhhhhhheeeccCCCeEEEEEEECCCCC----EEEEEecCchHH------HHHHHHHHHHHHhCCCCCCccEEEEEE
Confidence            4456789999999999999999999876544    499999965431      234667999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +++.+|+|||||.|++|..++.... ..+++..+..++.||+.||.|||++||+||||||+||+++.+|.+||+|||++.
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  173 (314)
T 3com_A           95 KNTDLWIVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAG  173 (314)
T ss_dssp             ETTEEEEEEECCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             eCCEEEEEeecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccch
Confidence            9999999999999999998876433 459999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .....                                                               ........||+.
T Consensus       174 ~~~~~---------------------------------------------------------------~~~~~~~~~~~~  190 (314)
T 3com_A          174 QLTDT---------------------------------------------------------------MAKRNTVIGTPF  190 (314)
T ss_dssp             ECBTT---------------------------------------------------------------BSCBCCCCSCGG
T ss_pred             hhhhh---------------------------------------------------------------ccccCccCCCCC
Confidence            54211                                                               011234578999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCCcc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      |+|||++.+..++.++|||||||++|+|++|..||.+.+.......+......    ....++.+.+||.+||..||.+|
T Consensus       191 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  270 (314)
T 3com_A          191 WMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQR  270 (314)
T ss_dssp             GCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTS
T ss_pred             ccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhC
Confidence            99999999999999999999999999999999999988876665555443322    12357899999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCCch
Q 042539          330 LGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      |    ++.++++||||++..+.
T Consensus       271 p----t~~~ll~~~~~~~~~~~  288 (314)
T 3com_A          271 A----TATQLLQHPFVRSAKGV  288 (314)
T ss_dssp             C----CHHHHTTSHHHHTCCCG
T ss_pred             c----CHHHHHhCHHHhcCCcc
Confidence            9    69999999999987764

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=3.8e-48  Score=371.70  Aligned_cols=267  Identities=21%  Similarity=0.281  Sum_probs=221.8

Q ss_pred             CCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccc
Q 042539            8 QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLP   86 (412)
Q Consensus         8 ~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv   86 (412)
                      ...+..++..++|++.+.||+|+||.||+|.+.... ..++..||+|++....   .....+.+.+|+++++.++||||+
T Consensus        13 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv   89 (314)
T 2ivs_A           13 LEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---SPSELRDLLSEFNVLKQVNHPHVI   89 (314)
T ss_dssp             -CCTTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred             cCCcccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---CHHHHHHHHHHHHHHhhCCCCcee
Confidence            345677888999999999999999999999885432 2244669999997543   234456778899999999999999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHc
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND----------------------RVFSPSVIRFYLSEIICAIEHLHNM  144 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~----------------------~~l~~~~~~~~~~qi~~aL~yLH~~  144 (412)
                      ++++++.+++.+|+|||||.||+|..++.....                      ..+++.++..++.||+.||.|||++
T Consensus        90 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  169 (314)
T 2ivs_A           90 KLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM  169 (314)
T ss_dssp             CEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999988876432                      2489999999999999999999999


Q ss_pred             CceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccc
Q 042539          145 GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKT  224 (412)
Q Consensus       145 ~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (412)
                      ||+||||||+|||++.++.+||+|||+++.......                                            
T Consensus       170 ~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~--------------------------------------------  205 (314)
T 2ivs_A          170 KLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDS--------------------------------------------  205 (314)
T ss_dssp             TEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSC--------------------------------------------
T ss_pred             CCcccccchheEEEcCCCCEEEcccccccccccccc--------------------------------------------
Confidence            999999999999999999999999999975521100                                            


Q ss_pred             cccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcC
Q 042539          225 KSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMK  303 (412)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~  303 (412)
                                       ........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+.......+...
T Consensus       206 -----------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~  268 (314)
T 2ivs_A          206 -----------------YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTG  268 (314)
T ss_dssp             -----------------EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTT
T ss_pred             -----------------ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcC
Confidence                             011223457889999999999889999999999999999999 99999998877776666544


Q ss_pred             C--CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          304 T--PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       304 ~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      .  ......++++.+||.+||..||.+||    ++.+++++
T Consensus       269 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rp----s~~~l~~~  305 (314)
T 2ivs_A          269 HRMERPDNCSEEMYRLMLQCWKQEPDKRP----VFADISKD  305 (314)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             CcCCCCccCCHHHHHHHHHHccCChhhCc----CHHHHHHH
Confidence            3  22345689999999999999999999    68888763

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=3.6e-48  Score=375.00  Aligned_cols=261  Identities=18%  Similarity=0.240  Sum_probs=211.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||+||+|++..++......||+|++......   .....+.+|+.+++.++||||++++++
T Consensus         7 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~   83 (325)
T 3kex_A            7 ARIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR---QSFQAVTDHMLAIGSLDHAHIVRLLGL   83 (325)
T ss_dssp             CCBCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC---SCBCSCCHHHHHHHTCCCTTBCCEEEE
T ss_pred             HhhcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH---HHHHHHHHHHHHHhcCCCCCcCeEEEE
Confidence            45678899999999999999999999998876655555777777543211   122345569999999999999999998


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +. ++..++||||+.||+|..++... .+.+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        84 ~~-~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~  161 (325)
T 3kex_A           84 CP-GSSLQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGV  161 (325)
T ss_dssp             EC-BSSEEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSG
T ss_pred             Ec-CCccEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCc
Confidence            86 56789999999999998887653 24599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.+....                                                             .........||
T Consensus       162 a~~~~~~~-------------------------------------------------------------~~~~~~~~~~~  180 (325)
T 3kex_A          162 ADLLPPDD-------------------------------------------------------------KQLLYSEAKTP  180 (325)
T ss_dssp             GGGSCCCT-------------------------------------------------------------TCCC-----CC
T ss_pred             ccccCccc-------------------------------------------------------------ccccccCCCCc
Confidence            97652110                                                             11122345688


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ......+.++.+||.+||..||.+
T Consensus       181 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  260 (325)
T 3kex_A          181 IKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENI  260 (325)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTT
T ss_pred             ccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhh
Confidence            89999999999999999999999999999999 999999987777666665432  222345678999999999999999


Q ss_pred             cCCCCCChhhhhcC
Q 042539          329 RLGYLRGACEIKEH  342 (412)
Q Consensus       329 R~~~~~~~~e~l~h  342 (412)
                      ||    ++.++++|
T Consensus       261 Rp----s~~el~~~  270 (325)
T 3kex_A          261 RP----TFKELANE  270 (325)
T ss_dssp             SC----CHHHHHHH
T ss_pred             Cc----CHHHHHHH
Confidence            99    57888765

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.2e-47  Score=360.88  Aligned_cols=255  Identities=19%  Similarity=0.266  Sum_probs=216.4

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..+.+..++|++++.||+|+||+||+|++..     +..||+|++......     ...+.+|++++++++||||+++++
T Consensus         3 ~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~-----~~~~~~E~~~l~~l~h~~i~~~~~   72 (269)
T 4hcu_A            3 GKWVIDPSELTFVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAMS-----EEDFIEEAEVMMKLSHPKLVQLYG   72 (269)
T ss_dssp             --CBCCGGGEEEEEEEEECSSCEEEEEEETT-----TEEEEEEEECTTSBC-----HHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             ccEEeChhhceeeheecCCCccEEEEEEecC-----CCeEEEEEecccccC-----HHHHHHHHHHHHhCCCCCEeeEEE
Confidence            3467888999999999999999999999863     234999999765432     234677999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+++.+|+||||+.|++|..++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        73 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg  151 (269)
T 4hcu_A           73 VCLEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFG  151 (269)
T ss_dssp             EECSSSSEEEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTT
T ss_pred             EEecCCceEEEEEeCCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccc
Confidence            9999999999999999999998876533 468999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++........                                                              ......|
T Consensus       152 ~~~~~~~~~~~--------------------------------------------------------------~~~~~~~  169 (269)
T 4hcu_A          152 MTRFVLDDQYT--------------------------------------------------------------SSTGTKF  169 (269)
T ss_dssp             GGGGBCCHHHH--------------------------------------------------------------STTSTTC
T ss_pred             ccccccccccc--------------------------------------------------------------cccCccc
Confidence            99765322110                                                              1123356


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+.....  .....++.+.++|.+||+.||+
T Consensus       170 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  249 (269)
T 4hcu_A          170 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPE  249 (269)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             ccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcc
Confidence            888999999999999999999999999999999 9999999998888888776432  2234578999999999999999


Q ss_pred             ccCCCCCChhhhhcC
Q 042539          328 KRLGYLRGACEIKEH  342 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h  342 (412)
                      +||    ++.++++|
T Consensus       250 ~Rp----s~~~ll~~  260 (269)
T 4hcu_A          250 DRP----AFSRLLRQ  260 (269)
T ss_dssp             GSC----CHHHHHHH
T ss_pred             cCc----CHHHHHHH
Confidence            999    68888864

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=6.6e-48  Score=378.22  Aligned_cols=260  Identities=25%  Similarity=0.385  Sum_probs=206.9

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-------hhHHHHHHHHHHHHHHhhcCCCcccee
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-------AKHEAERRARWEIRVLSRLSHPFLPKL   88 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-------~~~~~~~~~~~Ei~il~~l~hpnIv~l   88 (412)
                      ..++|++++.||+|+||.||+|.+..     +..||||++......       ......+.+.+|++++++++||||+++
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~   94 (362)
T 3pg1_A           20 MQSPYTVQRFISSGSYGAVCAGVDSE-----GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGL   94 (362)
T ss_dssp             TTCSCEEEEEEEEETTEEEEEEECTT-----SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCC
T ss_pred             hccceEEeEEeccCCCEEEEEEECCC-----CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccce
Confidence            35799999999999999999998753     345999999654321       223445778889999999999999999


Q ss_pred             eeeEEe-----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           89 LGSLET-----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        89 ~~~~~~-----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                      ++++..     ...+|+|||||. |+|..++.. ....+++..++.++.||+.||.|||++||+||||||+|||++.+|.
T Consensus        95 ~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~  172 (362)
T 3pg1_A           95 RDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHD-QRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNND  172 (362)
T ss_dssp             SEEEEECCTTTCCEEEEEEECCS-EEHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCC
T ss_pred             eeeEEeccCCCcceEEEEEccCC-CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCC
Confidence            999854     347899999997 466666553 3346999999999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+++....                                                                ..
T Consensus       173 ~kl~Dfg~~~~~~~----------------------------------------------------------------~~  188 (362)
T 3pg1_A          173 ITICDFNLAREDTA----------------------------------------------------------------DA  188 (362)
T ss_dssp             EEECCTTC------------------------------------------------------------------------
T ss_pred             EEEEecCccccccc----------------------------------------------------------------cc
Confidence            99999999974321                                                                11


Q ss_pred             CCcccccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC---------------
Q 042539          244 RSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP---------------  305 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~---------------  305 (412)
                      .....+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+....+...  .+               
T Consensus       189 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  268 (362)
T 3pg1_A          189 NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARD  268 (362)
T ss_dssp             -------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHH
T ss_pred             ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhH
Confidence            1234578999999999987 66899999999999999999999999998877776665421  00               


Q ss_pred             ----------------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          306 ----------------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       306 ----------------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                                      ..+..++.+.+||.+||+.||.+||    +++++++||||+++..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~f~~~~~  325 (362)
T 3pg1_A          269 YLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRI----STEQALRHPYFESLFD  325 (362)
T ss_dssp             HTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSC----CHHHHHTSGGGTTTCC
T ss_pred             HHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCC----CHHHHHcCchhhhccC
Confidence                            0124567899999999999999999    6999999999998743

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=7.3e-48  Score=373.33  Aligned_cols=263  Identities=20%  Similarity=0.247  Sum_probs=211.3

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      .....+..++|++++.||+|+||+||+|++..++......||+|.+....   .....+.+.+|+.++++++||||++++
T Consensus         7 ~~~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~   83 (327)
T 3poz_A            7 ALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMASVDNPHVCRLL   83 (327)
T ss_dssp             CSSEECCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEE
T ss_pred             HHHhhcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc---CHHHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            34556788999999999999999999999987766655557888875432   223456678899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.++. .++|+||+.+|+|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        84 ~~~~~~~-~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Df  161 (327)
T 3poz_A           84 GICLTST-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDF  161 (327)
T ss_dssp             EEEESSS-EEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCT
T ss_pred             EEEecCC-eEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccC
Confidence            9998765 789999999999988876543 45999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+......                                                             .........
T Consensus       162 g~a~~~~~~~-------------------------------------------------------------~~~~~~~~~  180 (327)
T 3poz_A          162 GLAKLLGAEE-------------------------------------------------------------KEYHAEGGK  180 (327)
T ss_dssp             THHHHHTTTC-------------------------------------------------------------C-------C
T ss_pred             cceeEccCCc-------------------------------------------------------------ccccccCCC
Confidence            9998653210                                                             011122345


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      ||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+....+....  +.....+.++.++|.+||+.||
T Consensus       181 ~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  260 (327)
T 3poz_A          181 VPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDA  260 (327)
T ss_dssp             CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCG
T ss_pred             ccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCh
Confidence            7889999999999999999999999999999999 999999987776665555432  3344567899999999999999


Q ss_pred             CccCCCCCChhhhhcC
Q 042539          327 VKRLGYLRGACEIKEH  342 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h  342 (412)
                      .+||    ++.+++++
T Consensus       261 ~~Rp----s~~ell~~  272 (327)
T 3poz_A          261 DSRP----KFRELIIE  272 (327)
T ss_dssp             GGSC----CHHHHHHH
T ss_pred             hhCC----CHHHHHHH
Confidence            9999    68888864

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-47  Score=372.19  Aligned_cols=261  Identities=21%  Similarity=0.283  Sum_probs=219.4

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..+..++|++++.||+|+||.||+|++..... .+++.||||++++..   .......+.+|+.+++.++||||++++++
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~  118 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDNPNIVKLLGV  118 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            36677899999999999999999999875321 244669999997653   23445678889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceee
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQN----------------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYR  149 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~----------------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHr  149 (412)
                      +.+++.+|+|||||.||+|..++....                      ...+++.+++.++.||+.||.|||++||+||
T Consensus       119 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~  198 (343)
T 1luf_A          119 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHR  198 (343)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             EccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            999999999999999999998887642                      1468999999999999999999999999999


Q ss_pred             eCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCC
Q 042539          150 DLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARV  229 (412)
Q Consensus       150 DlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (412)
                      ||||+|||++.+|.+||+|||+++.......                                                 
T Consensus       199 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-------------------------------------------------  229 (343)
T 1luf_A          199 DLATRNCLVGENMVVKIADFGLSRNIYSADY-------------------------------------------------  229 (343)
T ss_dssp             CCSGGGEEECGGGCEEECCCSCHHHHTGGGC-------------------------------------------------
T ss_pred             CCCcceEEECCCCeEEEeecCCCcccccCcc-------------------------------------------------
Confidence            9999999999999999999999976532110                                                 


Q ss_pred             CCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--C
Q 042539          230 SPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--E  306 (412)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~  306 (412)
                                  ........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+.....  .
T Consensus       230 ------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~  297 (343)
T 1luf_A          230 ------------YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILAC  297 (343)
T ss_dssp             ------------BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC
T ss_pred             ------------ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcCCC
Confidence                        011223468899999999999999999999999999999998 9999999998888877766542  2


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ...+++++.+||.+||..||.+||    ++.++++
T Consensus       298 ~~~~~~~l~~li~~~l~~~p~~Rp----s~~~~~~  328 (343)
T 1luf_A          298 PENCPLELYNLMRLCWSKLPADRP----SFCSIHR  328 (343)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcccCcccCC----CHHHHHH
Confidence            345678999999999999999999    5788775

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=3.2e-48  Score=377.49  Aligned_cols=263  Identities=26%  Similarity=0.386  Sum_probs=187.8

Q ss_pred             CCCCCCCCCCCCCccCceeee-eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC
Q 042539            4 TPPPQPQTTPSLDLDNLKALK-ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH   82 (412)
Q Consensus         4 ~~~~~~~~~~~~~~~~y~~~~-~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h   82 (412)
                      ++.+.|........++|++++ .||+|+||+||+|+++.++.    .||||++.....     ..+.   ....++.+.|
T Consensus        14 ~~~~~p~~~~~~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~----~vavK~~~~~~~-----~~~e---~~~~~~~~~h   81 (336)
T 3fhr_A           14 VLFQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQ----KCALKLLYDSPK-----ARQE---VDHHWQASGG   81 (336)
T ss_dssp             ------CCBCSCGGGTEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEESSHH-----HHHH---HHHHHHHTTS
T ss_pred             ccccCCCCCCccccceeEecceeeeeCCCeEEEEEEECCCCC----EEEEEEecCcHH-----HHHH---HHHHHHhcCC
Confidence            344556666777889999976 69999999999999987554    499999965321     1111   2234566789


Q ss_pred             CccceeeeeEEe----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE
Q 042539           83 PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI  158 (412)
Q Consensus        83 pnIv~l~~~~~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl  158 (412)
                      |||+++++++..    +..+|+|||||.||+|..++.......+++.+++.++.||+.||.|||++||+||||||+|||+
T Consensus        82 ~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll  161 (336)
T 3fhr_A           82 PHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLY  161 (336)
T ss_dssp             TTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             CChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEE
Confidence            999999999976    4569999999999999988877665679999999999999999999999999999999999999


Q ss_pred             ccC---CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          159 RQS---GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       159 ~~~---g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      +.+   +.+||+|||+++....                                                          
T Consensus       162 ~~~~~~~~~kl~Dfg~~~~~~~----------------------------------------------------------  183 (336)
T 3fhr_A          162 TSKEKDAVLKLTDFGFAKETTQ----------------------------------------------------------  183 (336)
T ss_dssp             SCSSTTCCEEECCCTTCEEC------------------------------------------------------------
T ss_pred             EecCCCceEEEeccccceeccc----------------------------------------------------------
Confidence            864   5599999999975421                                                          


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHH----HHHhcC-----CCC
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF----RNVLMK-----TPE  306 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~----~~i~~~-----~~~  306 (412)
                             ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.......    ..+...     .+.
T Consensus       184 -------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (336)
T 3fhr_A          184 -------NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPE  256 (336)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTT
T ss_pred             -------cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchh
Confidence                   1122457899999999998888999999999999999999999999876544332    122211     123


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +...++++.+||.+||..||.+||    +++++++||||++
T Consensus       257 ~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~hp~~~~  293 (336)
T 3fhr_A          257 WSEVSEDAKQLIRLLLKTDPTERL----TITQFMNHPWINQ  293 (336)
T ss_dssp             STTCCHHHHHHHHHHSCSSGGGSC----CHHHHHHSHHHHT
T ss_pred             hccCCHHHHHHHHHHCCCChhHCc----CHHHHhcCccccc
Confidence            346789999999999999999999    6999999999975

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=2e-49  Score=390.99  Aligned_cols=260  Identities=20%  Similarity=0.218  Sum_probs=194.7

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc--CCCccceee----
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL--SHPFLPKLL----   89 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l--~hpnIv~l~----   89 (412)
                      ...+|++++.||+|+||+||+|++..++    +.||||++.+.... .......+.+|+.+++.+  +||||++++    
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~----~~vavK~~~~~~~~-~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~  134 (371)
T 3q60_A           60 GERKLKLVEPLRVGDRSVVFLVRDVERL----EDFALKVFTMGAEN-SRSELERLHEATFAAARLLGESPEEARDRRRLL  134 (371)
T ss_dssp             CEEEEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEECCSTT-HHHHHHHHHHHHHHHHHHHC----------CBC
T ss_pred             CceeeeeeeeccCCCCEEEEEEEECCCC----ceeEEEEEEecccc-cccHHHHHHHHHHHHHHhcccChhhhhhceeEE
Confidence            3456999999999999999999987754    45999999876542 234455677786555555  599988765    


Q ss_pred             ---eeEEeC-----------------CeEEEEeeccCCCCchhHHHhhCCCCCCHHHH------HHHHHHHHHHHHHHHH
Q 042539           90 ---GSLETD-----------------EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVI------RFYLSEIICAIEHLHN  143 (412)
Q Consensus        90 ---~~~~~~-----------------~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~------~~~~~qi~~aL~yLH~  143 (412)
                         +++...                 ..+|+|||||. |+|..++..... .+++...      ..++.||+.||+|||+
T Consensus       135 ~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~  212 (371)
T 3q60_A          135 LPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQS  212 (371)
T ss_dssp             CCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence               444432                 34899999998 899988876432 2444544      5667999999999999


Q ss_pred             cCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCcccccc
Q 042539          144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKK  223 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (412)
                      +||+||||||+|||++.+|.+||+|||+|+....                                              
T Consensus       213 ~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----------------------------------------------  246 (371)
T 3q60_A          213 KGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----------------------------------------------  246 (371)
T ss_dssp             TTEEETTCSGGGEEECTTSCEEECCGGGEEETTC----------------------------------------------
T ss_pred             CCCccCcCCHHHEEECCCCCEEEEecceeeecCC----------------------------------------------
Confidence            9999999999999999999999999999975421                                              


Q ss_pred             ccccCCCCccccccccCCCCCCcccccCCCCccceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHH--HHH
Q 042539          224 TKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET--FRN  299 (412)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~--~~~  299 (412)
                                          ......||+.|+|||++.+  ..++.++|||||||++|+|++|+.||.+......  +..
T Consensus       247 --------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~  306 (371)
T 3q60_A          247 --------------------RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKR  306 (371)
T ss_dssp             --------------------EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCB
T ss_pred             --------------------CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhh
Confidence                                1113357799999999987  6789999999999999999999999988642211  100


Q ss_pred             H---h--cC---CCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCchh
Q 042539          300 V---L--MK---TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       300 i---~--~~---~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                      +   .  ..   .+.....++.+.+||.+||+.||++||    ++.++++||||+++.|..
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~e~l~hp~f~~~~~~~  363 (371)
T 3q60_A          307 PSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRL----LPLEAMETPEFLQLQNEI  363 (371)
T ss_dssp             CCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCC----CHHHHTTSHHHHHHHHHH
T ss_pred             hhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCC----CHHHHhcCHHHHHHHHHH
Confidence            0   0  01   122246789999999999999999999    699999999999887753

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=7.4e-48  Score=371.42  Aligned_cols=263  Identities=17%  Similarity=0.242  Sum_probs=219.2

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      .+++..++|++.+.||+|+||.||+|.++.. ...++..||+|++.....   ......+.+|+.+++.++||||+++++
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~   95 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS---MRERIEFLNEASVMKEFNCHHVVRLLG   95 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC---HHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccC---HHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence            4567778999999999999999999987631 112345699999975432   233456778999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhC--------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQN--------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~--------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g  162 (412)
                      ++.+++..|+|||||.||+|..++....        ...+++..+..++.||+.||.|||++||+||||||+|||++.+|
T Consensus        96 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~  175 (322)
T 1p4o_A           96 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDF  175 (322)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC
T ss_pred             EEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCC
Confidence            9999999999999999999998876532        13478999999999999999999999999999999999999999


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+++........                                                             
T Consensus       176 ~~kl~Dfg~~~~~~~~~~~-------------------------------------------------------------  194 (322)
T 1p4o_A          176 TVKIGDFGMTRDIYETDYY-------------------------------------------------------------  194 (322)
T ss_dssp             CEEECCTTCCCGGGGGGCE-------------------------------------------------------------
T ss_pred             eEEECcCcccccccccccc-------------------------------------------------------------
Confidence            9999999999765321100                                                             


Q ss_pred             CCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQ  319 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~  319 (412)
                      .......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ......++.+.+||.
T Consensus       195 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  274 (322)
T 1p4o_A          195 RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMR  274 (322)
T ss_dssp             EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             ccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHH
Confidence            01123467899999999999999999999999999999999 999999998888877776543  233456889999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +||..||.+||    ++.++++|
T Consensus       275 ~~l~~dp~~Rp----s~~e~l~~  293 (322)
T 1p4o_A          275 MCWQYNPKMRP----SFLEIISS  293 (322)
T ss_dssp             HHTCSSGGGSC----CHHHHHHH
T ss_pred             HHcCCCcccCc----CHHHHHHH
Confidence            99999999999    68888875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1.1e-47  Score=360.95  Aligned_cols=252  Identities=25%  Similarity=0.385  Sum_probs=203.1

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .++..++|++.+.||+|+||.||+|++.      +..||||+++...........+.+.+|+.+++.++||||+++++++
T Consensus         2 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   75 (271)
T 3dtc_A            2 LEIDFAELTLEEIIGIGGFGKVYRAFWI------GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVC   75 (271)
T ss_dssp             CBCCTTSEEEEEEEEEETTEEEEEEEET------TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CccchhheeeeeeeccCCCeEEEEEEEc------CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence            3678899999999999999999999874      2349999997654433334456778899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC---ceeeeCCCCceEEcc--------C
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG---IAYRDLKPENILIRQ--------S  161 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~---iiHrDlKp~NiLl~~--------~  161 (412)
                      .+++.+|+||||+.|++|..++..   ..+++..+..++.|++.||.|||++|   |+||||||+|||++.        +
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~  152 (271)
T 3dtc_A           76 LKEPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSN  152 (271)
T ss_dssp             CCC--CEEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSS
T ss_pred             ecCCceEEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccC
Confidence            999999999999999999877642   35999999999999999999999999   999999999999986        7


Q ss_pred             CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          162 GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       162 g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      +.+||+|||+++.....                                                               
T Consensus       153 ~~~kl~Dfg~~~~~~~~---------------------------------------------------------------  169 (271)
T 3dtc_A          153 KILKITDFGLAREWHRT---------------------------------------------------------------  169 (271)
T ss_dssp             CCEEECCCCC----------------------------------------------------------------------
T ss_pred             cceEEccCCcccccccc---------------------------------------------------------------
Confidence            78999999999754211                                                               


Q ss_pred             CCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHH
Q 042539          242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLI  318 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli  318 (412)
                        ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.......+......   ....++.+.+||
T Consensus       170 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  247 (271)
T 3dtc_A          170 --TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLM  247 (271)
T ss_dssp             --------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHH
T ss_pred             --cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHH
Confidence              111346899999999999999999999999999999999999999998888777666654422   245678999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhcC
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      .+||..||.+||    ++.+++++
T Consensus       248 ~~~l~~~p~~Rp----s~~e~l~~  267 (271)
T 3dtc_A          248 EDCWNPDPHSRP----SFTNILDQ  267 (271)
T ss_dssp             HHHTCSSGGGSC----CHHHHHHH
T ss_pred             HHHhcCCcccCc----CHHHHHHH
Confidence            999999999999    68888763

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=3.1e-47  Score=360.43  Aligned_cols=256  Identities=21%  Similarity=0.249  Sum_probs=214.6

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ...+++..++|++++.||+|+||+||++.+..     +..||+|+++.....     ...+.+|+++++.++|+||++++
T Consensus        16 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~-----~~~~~~E~~~l~~l~h~~i~~~~   85 (283)
T 3gen_A           16 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGSMS-----EDEFIEEAKVMMNLSHEKLVQLY   85 (283)
T ss_dssp             CCTTBCCGGGEEEEEECC---CEEEEEEEETT-----TEEEEEEEECTTSBC-----HHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             CCCccCCHHHHHhHhhcCCCCCceEEEEEEcC-----CCeEEEEEecCCCCC-----HHHHHHHHHHHhcCCCCCEeeEE
Confidence            34668889999999999999999999998763     334999999765432     23466799999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.+++.+|+|||||.|++|..++.... ..+++.++..++.|++.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        86 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Df  164 (283)
T 3gen_A           86 GVCTKQRPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDF  164 (283)
T ss_dssp             EEECSSSSEEEEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECST
T ss_pred             EEEecCCCeEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccc
Confidence            99999999999999999999998876532 35999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++........                                                              ......
T Consensus       165 g~~~~~~~~~~~--------------------------------------------------------------~~~~~~  182 (283)
T 3gen_A          165 GLSRYVLDDEYT--------------------------------------------------------------SSVGSK  182 (283)
T ss_dssp             TGGGGBCCHHHH--------------------------------------------------------------STTSTT
T ss_pred             cccccccccccc--------------------------------------------------------------cccCCc
Confidence            999765322110                                                              011234


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP  326 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.+..+....+.....  .....++.+.+||.+||..||
T Consensus       183 ~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  262 (283)
T 3gen_A          183 FPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKA  262 (283)
T ss_dssp             SCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSG
T ss_pred             cCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHHHHccCCh
Confidence            6888999999999999999999999999999998 9999999998888887776532  223457899999999999999


Q ss_pred             CccCCCCCChhhhhcC
Q 042539          327 VKRLGYLRGACEIKEH  342 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h  342 (412)
                      .+||    +++++++|
T Consensus       263 ~~Rp----s~~~ll~~  274 (283)
T 3gen_A          263 DERP----TFKILLSN  274 (283)
T ss_dssp             GGSC----CHHHHHHH
T ss_pred             hHCc----CHHHHHHH
Confidence            9999    68888864

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.7e-47  Score=362.25  Aligned_cols=259  Identities=20%  Similarity=0.323  Sum_probs=207.3

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...++..++|++++.||+|+||.||+|++...+. .+..||+|+++...   .......+.+|+.++++++||||+++++
T Consensus         8 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~   83 (281)
T 1mp8_A            8 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPEN-PALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIG   83 (281)
T ss_dssp             -CCBCCGGGEEEEEEEEECSSSEEEEEEECCC---CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cceEEehHHeEEEeEeeecCCeeEEEEEEecCCC-CceEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCccceEEE
Confidence            4567888999999999999999999999876443 34569999986542   2345567888999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++. ++..|+||||+.|++|..++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+|||
T Consensus        84 ~~~-~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  161 (281)
T 1mp8_A           84 VIT-ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFG  161 (281)
T ss_dssp             EEC-SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC--
T ss_pred             EEc-cCccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccc
Confidence            984 567899999999999998876543 459999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.......                                                              .......+
T Consensus       162 ~~~~~~~~~~--------------------------------------------------------------~~~~~~~~  179 (281)
T 1mp8_A          162 LSRYMEDSTY--------------------------------------------------------------YKASKGKL  179 (281)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             cccccCcccc--------------------------------------------------------------cccccCCC
Confidence            9976532110                                                              01123357


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  +.....++.+.+||.+||..||+
T Consensus       180 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~  259 (281)
T 1mp8_A          180 PIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPS  259 (281)
T ss_dssp             CGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence            889999999999999999999999999999996 999999988777777776543  23356789999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    ++.++++
T Consensus       260 ~Rp----s~~~l~~  269 (281)
T 1mp8_A          260 RRP----RFTELKA  269 (281)
T ss_dssp             GSC----CHHHHHH
T ss_pred             hCc----CHHHHHH
Confidence            999    6888875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=2e-47  Score=366.92  Aligned_cols=266  Identities=23%  Similarity=0.336  Sum_probs=210.0

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+..++|++.+.||+|+||+||+|.+..++.    .||+|++...    .....+.+.+|++++++++||||+++++++
T Consensus         5 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~----~va~K~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   76 (310)
T 3s95_A            5 RIFRPSDLIHGEVLGKGCFGQAIKVTHRETGE----VMVMKELIRF----DEETQRTFLKEVKVMRCLEHPNVLKFIGVL   76 (310)
T ss_dssp             EEECGGGEEEEEEEECCSSEEEEEEEETTTCC----EEEEEEESCC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             eeeChhHeeccceecCCCCEEEEEEEECCCCc----EEEEEEeccC----CHHHHHHHHHHHHHHHhCCCcCcccEEEEE
Confidence            35678999999999999999999999987554    4999998553    234556788899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+++.+|+|||||.||+|..++... ...+++.++..++.|++.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus        77 ~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  155 (310)
T 3s95_A           77 YKDKRLNFITEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLA  155 (310)
T ss_dssp             EETTEEEEEEECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTC
T ss_pred             ecCCeeEEEEEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccc
Confidence            9999999999999999999888763 345999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +...........                                                 .............+.+||+
T Consensus       156 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~gt~  186 (310)
T 3s95_A          156 RLMVDEKTQPEG-------------------------------------------------LRSLKKPDRKKRYTVVGNP  186 (310)
T ss_dssp             EECC---------------------------------------------------------------------CCCCSCG
T ss_pred             eecccccccccc-------------------------------------------------cccccccccccccccCCCc
Confidence            866322110000                                                 0000001122334678999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH-----HHHHHhcCCCCCCCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE-----TFRNVLMKTPEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~-----~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|+|||++.+..++.++|||||||++|+|++|..||.......     ....... ......+++.+.+||.+||..||+
T Consensus       187 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~  265 (310)
T 3s95_A          187 YWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLD-RYCPPNCPPSFFPITVRCCDLDPE  265 (310)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHH-HTCCTTCCTTHHHHHHHHTCSSGG
T ss_pred             ceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcccc-ccCCCCCCHHHHHHHHHHccCChh
Confidence            9999999999999999999999999999999999987632111     0111111 112345678899999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    ++.++++
T Consensus       266 ~Rp----s~~~l~~  275 (310)
T 3s95_A          266 KRP----SFVKLEH  275 (310)
T ss_dssp             GSC----CHHHHHH
T ss_pred             hCc----CHHHHHH
Confidence            999    6888876

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.7e-47  Score=370.88  Aligned_cols=254  Identities=21%  Similarity=0.272  Sum_probs=204.0

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~   94 (412)
                      .-++|++++.||+|+||+||+|++..++    +.||||++.....      ...+.+|+++++.+ +|+||+++++++.+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~------~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   76 (330)
T 2izr_A            7 VGPNFRVGKKIGCGNFGELRLGKNLYTN----EYVAIKLEPMKSR------APQLHLEYRFYKQLGSGDGIPQVYYFGPC   76 (330)
T ss_dssp             ETTTEEEEEECCC-CTTSEEEEEETTTT----EEEEEEEEETTCS------SCCHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred             EcCCeEEEEEeeccCCceEEEEEECCCC----cEEEEEEeccccc------hHHHHHHHHHHHHhhCCCCCCEEEEEEec
Confidence            3478999999999999999999987654    4599999865432      12355699999999 89999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC-----EEEccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH-----VTLTDF  169 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~-----vkL~DF  169 (412)
                      ++..|+||||+ |++|.+++... .+.+++.++..++.||+.||+|||++||+||||||+|||++.+|.     +||+||
T Consensus        77 ~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DF  154 (330)
T 2izr_A           77 GKYNAMVLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDF  154 (330)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCC
T ss_pred             CCccEEEEEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEc
Confidence            99999999999 99999887754 346999999999999999999999999999999999999999887     999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+.+......                                                        ...........+
T Consensus       155 g~a~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~~  178 (330)
T 2izr_A          155 ALAKEYIDPETK--------------------------------------------------------KHIPYREHKSLT  178 (330)
T ss_dssp             TTCEESBCTTTC--------------------------------------------------------CBCCCCCCCCCC
T ss_pred             ccceeeecCCCC--------------------------------------------------------ccccccccCCcC
Confidence            999865321100                                                        000111234678


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC---CHHHHHHHHhcCCCCC-----CCCChHHHHHHHHh
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK---NRKETFRNVLMKTPEF-----VGQRTALTDLIQRL  321 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~---~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~  321 (412)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+.   +..+.+..+.......     ....+++.+||.+|
T Consensus       179 gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~li~~~  258 (330)
T 2izr_A          179 GTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPEMATYLRYV  258 (330)
T ss_dssp             SCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHH
T ss_pred             CCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccChHHHHHHHHH
Confidence            999999999999999999999999999999999999999884   3444444443221111     12223899999999


Q ss_pred             hhhCCCccCCCCCChhhhhc
Q 042539          322 LEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |..||.+||    +++++++
T Consensus       259 l~~~p~~RP----~~~~l~~  274 (330)
T 2izr_A          259 RRLDFFEKP----DYDYLRK  274 (330)
T ss_dssp             HHCCTTCCC----CHHHHHH
T ss_pred             HhCCCCCCC----CHHHHHH
Confidence            999999999    4666554

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=6.6e-48  Score=377.36  Aligned_cols=263  Identities=23%  Similarity=0.338  Sum_probs=213.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      .+++..++|++++.||+|+||.||+|++...+ ..+++.||||++++...   ....+.+.+|+++++++ +||||++++
T Consensus        16 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hpniv~~~   92 (359)
T 3vhe_A           16 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLL   92 (359)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCC---HHHHHHHHHHHHHHHhhcCCcceeeee
Confidence            45678899999999999999999999865432 23556799999976532   23356678899999999 689999999


Q ss_pred             eeEEeCC-eEEEEeeccCCCCchhHHHhhCC-------------------------------------------------
Q 042539           90 GSLETDE-FLAWAVPYCPGGDLNVLRYKQND-------------------------------------------------  119 (412)
Q Consensus        90 ~~~~~~~-~~~lv~e~~~gg~L~~~~~~~~~-------------------------------------------------  119 (412)
                      +++.+.+ .+++|||||.||+|..++.....                                                 
T Consensus        93 ~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (359)
T 3vhe_A           93 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKS  172 (359)
T ss_dssp             EEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------------
T ss_pred             eeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccc
Confidence            9998755 59999999999999988876432                                                 


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhh
Q 042539          120 ---------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQ  184 (412)
Q Consensus       120 ---------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~  184 (412)
                                     ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.+....     
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~-----  247 (359)
T 3vhe_A          173 LSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP-----  247 (359)
T ss_dssp             -----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT-----
T ss_pred             cchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccc-----
Confidence                           128999999999999999999999999999999999999999999999999997542110     


Q ss_pred             cccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCC
Q 042539          185 SLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG  264 (412)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~  264 (412)
                                                                              .........||+.|+|||++.+..
T Consensus       248 --------------------------------------------------------~~~~~~~~~~t~~y~aPE~~~~~~  271 (359)
T 3vhe_A          248 --------------------------------------------------------DYVRKGDARLPLKWMAPETIFDRV  271 (359)
T ss_dssp             --------------------------------------------------------TCEEC--CEECGGGCCHHHHHHCC
T ss_pred             --------------------------------------------------------cchhccccCCCceeEChhhhcCCC
Confidence                                                                    111223457899999999999999


Q ss_pred             CCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhc-CC--CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          265 HEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLM-KT--PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       265 ~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~-~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      ++.++|||||||++|+|++ |..||.+....+.+...+. ..  ......++++.++|.+||..||.+||    ++.+++
T Consensus       272 ~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp----s~~ell  347 (359)
T 3vhe_A          272 YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRP----TFSELV  347 (359)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC----CHHHHH
T ss_pred             CCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCC----CHHHHH
Confidence            9999999999999999998 9999998764444333332 21  22334678999999999999999999    688888


Q ss_pred             cC
Q 042539          341 EH  342 (412)
Q Consensus       341 ~h  342 (412)
                      +|
T Consensus       348 ~~  349 (359)
T 3vhe_A          348 EH  349 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=3.3e-47  Score=357.38  Aligned_cols=253  Identities=21%  Similarity=0.249  Sum_probs=214.9

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .++..++|++++.||+|+||.||+|+++.     +..||+|+++.....     ...+.+|++++++++||||+++++++
T Consensus         3 ~~l~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~-----~~~~~~E~~~l~~l~h~~i~~~~~~~   72 (268)
T 3sxs_A            3 MELKREEITLLKELGSGQFGVVKLGKWKG-----QYDVAVKMIKEGSMS-----EDEFFQEAQTMMKLSHPKLVKFYGVC   72 (268)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECBTTBC-----HHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             eEechhheeeeeeeccCCCceEEEEEecC-----ceeEEEEEeccCCCc-----HHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            46788999999999999999999998763     234999999765432     23466799999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .++..+|+|||||.|++|..++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~  151 (268)
T 3sxs_A           73 SKEYPIYIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMT  151 (268)
T ss_dssp             CSSSSEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCE
T ss_pred             ccCCceEEEEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccc
Confidence            99999999999999999998876643 34899999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +......                                                              ........||+
T Consensus       152 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  169 (268)
T 3sxs_A          152 RYVLDDQ--------------------------------------------------------------YVSSVGTKFPV  169 (268)
T ss_dssp             EECCTTC--------------------------------------------------------------EEECCSCCCCG
T ss_pred             eecchhh--------------------------------------------------------------hhcccCCCcCc
Confidence            7542110                                                              00112335678


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+......  ....++.+.++|.+||+.||.+|
T Consensus       170 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  249 (268)
T 3sxs_A          170 KWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKR  249 (268)
T ss_dssp             GGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGS
T ss_pred             ccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhC
Confidence            8999999999889999999999999999998 99999999888887777655432  23457899999999999999999


Q ss_pred             CCCCCChhhhhcC
Q 042539          330 LGYLRGACEIKEH  342 (412)
Q Consensus       330 ~~~~~~~~e~l~h  342 (412)
                      |    ++.+++++
T Consensus       250 p----s~~~ll~~  258 (268)
T 3sxs_A          250 P----TFQQLLSS  258 (268)
T ss_dssp             C----CHHHHHHH
T ss_pred             c----CHHHHHHH
Confidence            9    68888864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.1e-47  Score=379.54  Aligned_cols=259  Identities=20%  Similarity=0.273  Sum_probs=216.2

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ...+.+..++|++++.||+|+||.||+|+++.++    +.||||+++...   .......+.+|++++++++||||++++
T Consensus       106 ~~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~----~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~  178 (377)
T 3cbl_A          106 KDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADN----TLVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLI  178 (377)
T ss_dssp             CCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTC----CEEEEEECCTTS---CHHHHTTTTHHHHHHTTCCCTTBCCEE
T ss_pred             ccccEEchHHeEEeeEeccCCCCeEEEEEEecCC----eEEEEEEccccC---CHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            4456788899999999999999999999997644    449999996542   233455677899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.+++.+|+|||||.||+|..++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.+|.+||+||
T Consensus       179 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~Df  257 (377)
T 3cbl_A          179 GVCTQKQPIYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDF  257 (377)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCG
T ss_pred             EEEecCCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcC
Confidence            99999999999999999999998877543 34899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.......                                                             ........
T Consensus       258 G~s~~~~~~~~-------------------------------------------------------------~~~~~~~~  276 (377)
T 3cbl_A          258 GMSREEADGVY-------------------------------------------------------------AASGGLRQ  276 (377)
T ss_dssp             GGCEECTTSEE-------------------------------------------------------------ECCSSCCE
T ss_pred             CCceecCCCce-------------------------------------------------------------eecCCCCC
Confidence            99975321100                                                             00011224


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      +|+.|+|||++.+..++.++|||||||++|||++ |..||.+.+..+....+....  +....+++++.+||.+||..||
T Consensus       277 ~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP  356 (377)
T 3cbl_A          277 VPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEP  356 (377)
T ss_dssp             EEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             CCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCc
Confidence            5778999999998889999999999999999998 999999988887776665432  2233467899999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      ++||    +++++++
T Consensus       357 ~~Rp----s~~~i~~  367 (377)
T 3cbl_A          357 GQRP----SFSTIYQ  367 (377)
T ss_dssp             GGSC----CHHHHHH
T ss_pred             hhCc----CHHHHHH
Confidence            9999    5777764

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.9e-47  Score=375.83  Aligned_cols=256  Identities=23%  Similarity=0.373  Sum_probs=205.7

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-----------
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-----------   81 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-----------   81 (412)
                      ..+..++|++++.||+|+||+||+|++..++    +.||||++.+...     ....+.+|+.+++.+.           
T Consensus        14 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~~~~~~~~~~~~   84 (373)
T 1q8y_A           14 EPYKDARYILVRKLGWGHFSTVWLAKDMVNN----THVAMKIVRGDKV-----YTEAAEDEIKLLQRVNDADNTKEDSMG   84 (373)
T ss_dssp             CEETTTTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECSCHH-----HHHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             CcccCCeEEEEEeeeecCCeEEEEEEecCCC----cEEEEEEecCCcc-----chhhhhHHHHHHHHhhcccccchhccc
Confidence            4566789999999999999999999987654    4599999975432     2345667899988886           


Q ss_pred             CCccceeeeeEEeCC----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCce
Q 042539           82 HPFLPKLLGSLETDE----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENI  156 (412)
Q Consensus        82 hpnIv~l~~~~~~~~----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~Ni  156 (412)
                      |+||+++++++...+    .+++|||++ |++|..++.......+++..++.++.||+.||+|||++ ||+||||||+||
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NI  163 (373)
T 1q8y_A           85 ANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENV  163 (373)
T ss_dssp             HTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGE
T ss_pred             cchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHe
Confidence            789999999998654    799999999 99998888776556699999999999999999999998 999999999999


Q ss_pred             EEcc------CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCC
Q 042539          157 LIRQ------SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVS  230 (412)
Q Consensus       157 Ll~~------~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (412)
                      |++.      .+.+||+|||+++....                                                     
T Consensus       164 ll~~~~~~~~~~~~kl~Dfg~a~~~~~-----------------------------------------------------  190 (373)
T 1q8y_A          164 LMEIVDSPENLIQIKIADLGNACWYDE-----------------------------------------------------  190 (373)
T ss_dssp             EEEEEETTTTEEEEEECCCTTCEETTB-----------------------------------------------------
T ss_pred             EEeccCCCcCcceEEEcccccccccCC-----------------------------------------------------
Confidence            9954      34799999999975421                                                     


Q ss_pred             CccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC------HHHHHHHHhc--
Q 042539          231 PVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN------RKETFRNVLM--  302 (412)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~i~~--  302 (412)
                                   .....+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+      ....+..+..  
T Consensus       191 -------------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  257 (373)
T 1q8y_A          191 -------------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELL  257 (373)
T ss_dssp             -------------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHH
T ss_pred             -------------CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhc
Confidence                         1123478999999999999999999999999999999999999998754      2222222221  


Q ss_pred             -CCC---------------------------------------CC-CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          303 -KTP---------------------------------------EF-VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       303 -~~~---------------------------------------~~-~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                       ..+                                       .+ ...++++.+||.+||+.||.+||    +++|+++
T Consensus       258 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----t~~ell~  333 (373)
T 1q8y_A          258 GELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA----DAGGLVN  333 (373)
T ss_dssp             CSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB----CHHHHHT
T ss_pred             CCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC----CHHHHhh
Confidence             100                                       00 11236788999999999999999    6999999


Q ss_pred             CCCCCCC
Q 042539          342 HVFFKGV  348 (412)
Q Consensus       342 h~ff~~~  348 (412)
                      ||||++.
T Consensus       334 hp~f~~~  340 (373)
T 1q8y_A          334 HPWLKDT  340 (373)
T ss_dssp             CGGGTTC
T ss_pred             Chhhhcc
Confidence            9999864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=9.7e-47  Score=362.43  Aligned_cols=258  Identities=24%  Similarity=0.352  Sum_probs=203.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .....+++|++++.||+|+||.||+|++..++    +.||+|++.+... ........+.+|+.+++.++||||++++++
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~  102 (309)
T 2h34_A           28 REGTQFGPYRLRRLVGRGGMGDVYEAEDTVRE----RIVALKLMSETLS-SDPVFRTRMQREARTAGRLQEPHVVPIHDF  102 (309)
T ss_dssp             ------CCEEEEEEEEECSSSEEEEEEETTTT----EEEEEEECGGGGG-GSHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             CCCcEeccEEEEEEEcCCCCeeEEEEEEcCCC----eEEEEEecCcccc-cCHHHHHHHHHHHHHHhhcCCCCeeEEEEE
Confidence            34566899999999999999999999987654    4599999976543 234456778889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+||||+.|++|..++....  .+++.++..++.|++.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus       103 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~  180 (309)
T 2h34_A          103 GEIDGQLYVDMRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGI  180 (309)
T ss_dssp             EEETTEEEEEEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC
T ss_pred             EeeCCeEEEEEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCcc
Confidence            999999999999999999998887654  499999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      +......                                                              .........||
T Consensus       181 ~~~~~~~--------------------------------------------------------------~~~~~~~~~~~  198 (309)
T 2h34_A          181 ASATTDE--------------------------------------------------------------KLTQLGNTVGT  198 (309)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             Ccccccc--------------------------------------------------------------ccccccccCCC
Confidence            8754211                                                              01112345799


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC----CCCCChHHHHHHHHhhhhCCC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE----FVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~L~~dP~  327 (412)
                      +.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.......+....+.    ....+.++.++|.+||..||+
T Consensus       199 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~  278 (309)
T 2h34_A          199 LYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPE  278 (309)
T ss_dssp             GGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGG
T ss_pred             cCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHH
Confidence            9999999999988999999999999999999999999987765444444333221    245788999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||+   +++++++
T Consensus       279 ~Rp~---s~~~l~~  289 (309)
T 2h34_A          279 DRYV---TCGDLSA  289 (309)
T ss_dssp             GSCS---SHHHHHH
T ss_pred             HHHH---hHHHHHH
Confidence            9995   5666664

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=4.3e-47  Score=364.17  Aligned_cols=264  Identities=21%  Similarity=0.296  Sum_probs=217.5

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccce
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPK   87 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~   87 (412)
                      ....++..++|++++.||+|+||+||+|++... +..+++.||+|+++....   ......+.+|+.+++++ +||||++
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~   91 (313)
T 1t46_A           15 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVN   91 (313)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             ccccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh---HHHHHHHHHHHHHHhhcccCCCeee
Confidence            445678889999999999999999999986432 233556799999976532   23456778899999999 8999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhCCC----------------CCCHHHHHHHHHHHHHHHHHHHHcCceeeeC
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR----------------VFSPSVIRFYLSEIICAIEHLHNMGIAYRDL  151 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~----------------~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDl  151 (412)
                      +++++.+++..++|||||.||+|..++......                .+++.++..++.||+.||.|||++||+||||
T Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl  171 (313)
T 1t46_A           92 LLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDL  171 (313)
T ss_dssp             EEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            999999999999999999999999888765422                4899999999999999999999999999999


Q ss_pred             CCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCC
Q 042539          152 KPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSP  231 (412)
Q Consensus       152 Kp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (412)
                      ||+|||++.++.+||+|||+++.......                                                   
T Consensus       172 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------------  200 (313)
T 1t46_A          172 AARNILLTHGRITKICDFGLARDIKNDSN---------------------------------------------------  200 (313)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCTTSCTT---------------------------------------------------
T ss_pred             ccceEEEcCCCCEEEcccccccccccccc---------------------------------------------------
Confidence            99999999999999999999975521100                                                   


Q ss_pred             ccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC---CCC
Q 042539          232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT---PEF  307 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~---~~~  307 (412)
                                ........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+..........+...   ...
T Consensus       201 ----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~  270 (313)
T 1t46_A          201 ----------YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP  270 (313)
T ss_dssp             ----------SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCC
T ss_pred             ----------ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCc
Confidence                      011223467889999999999999999999999999999998 999998876554444443322   223


Q ss_pred             CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          308 VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       308 ~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ...+.++.+||.+||..||.+||    ++.++++
T Consensus       271 ~~~~~~l~~li~~~l~~dp~~Rp----s~~ell~  300 (313)
T 1t46_A          271 EHAPAEMYDIMKTCWDADPLKRP----TFKQIVQ  300 (313)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCCchhCc----CHHHHHH
Confidence            45678999999999999999999    6888886

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=9.6e-47  Score=366.26  Aligned_cols=264  Identities=19%  Similarity=0.270  Sum_probs=219.2

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCcc
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFL   85 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnI   85 (412)
                      .+.+++..++|++++.||+|+||+||+|++...+.   ..+..||||+++...   .......+.+|+.+++.+ +||||
T Consensus        27 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~i  103 (334)
T 2pvf_A           27 DPKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNI  103 (334)
T ss_dssp             CTTTBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---CHHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             CccccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---cHHHHHHHHHHHHHHHHhhcCCCE
Confidence            34567888999999999999999999999864332   345679999997543   233456678899999999 89999


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeC
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQND--------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDL  151 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~--------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDl  151 (412)
                      +++++++.+++.+|+|||||.||+|..++.....              ..+++.++..++.||+.||.|||++||+||||
T Consensus       104 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dl  183 (334)
T 2pvf_A          104 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDL  183 (334)
T ss_dssp             CCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             eeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCC
Confidence            9999999999999999999999999988875432              24899999999999999999999999999999


Q ss_pred             CCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCC
Q 042539          152 KPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSP  231 (412)
Q Consensus       152 Kp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (412)
                      ||+|||++.+|.+||+|||+++.......                                                   
T Consensus       184 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~---------------------------------------------------  212 (334)
T 2pvf_A          184 AARNVLVTENNVMKIADFGLARDINNIDY---------------------------------------------------  212 (334)
T ss_dssp             SGGGEEECTTCCEEECCCTTCEECTTTSS---------------------------------------------------
T ss_pred             ccceEEEcCCCCEEEcccccccccccccc---------------------------------------------------
Confidence            99999999999999999999975421100                                                   


Q ss_pred             ccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCC
Q 042539          232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFV  308 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~  308 (412)
                                ........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ....
T Consensus       213 ----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~  282 (334)
T 2pvf_A          213 ----------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA  282 (334)
T ss_dssp             ----------EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCT
T ss_pred             ----------ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCCCCCCc
Confidence                      011123457889999999998889999999999999999999 999999998888777666543  2234


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..+.++.+||.+||..||.+||    ++.++++
T Consensus       283 ~~~~~l~~li~~~l~~dp~~Rp----s~~ell~  311 (334)
T 2pvf_A          283 NCTNELYMMMRDCWHAVPSQRP----TFKQLVE  311 (334)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             cCCHHHHHHHHHHccCChhhCc----CHHHHHH
Confidence            5678999999999999999999    6888886

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-47  Score=371.25  Aligned_cols=263  Identities=20%  Similarity=0.296  Sum_probs=214.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      .+++..++|++++.||+|+||+||+|++.... ..++..||||++....   .......+.+|+.+++++ +||||++++
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~  115 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA---DSSEREALMSELKMMTQLGSHENIVNLL  115 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc---CHHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            45677889999999999999999999975432 2245569999997543   223456677899999999 899999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCC---------------------CCCCHHHHHHHHHHHHHHHHHHHHcCcee
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQND---------------------RVFSPSVIRFYLSEIICAIEHLHNMGIAY  148 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~---------------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiH  148 (412)
                      +++.+.+.+|+|||||.||+|..++.....                     ..+++..+..++.||+.||+|||++||+|
T Consensus       116 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH  195 (344)
T 1rjb_A          116 GACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVH  195 (344)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             EEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999999988876432                     23789999999999999999999999999


Q ss_pred             eeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccC
Q 042539          149 RDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSAR  228 (412)
Q Consensus       149 rDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
                      |||||+|||++.+|.+||+|||+++......                                                 
T Consensus       196 ~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~-------------------------------------------------  226 (344)
T 1rjb_A          196 RDLAARNVLVTHGKVVKICDFGLARDIMSDS-------------------------------------------------  226 (344)
T ss_dssp             TTCSGGGEEEETTTEEEECCCGGGSCGGGCT-------------------------------------------------
T ss_pred             CCCChhhEEEcCCCcEEeCCCccCcccccCc-------------------------------------------------
Confidence            9999999999999999999999997653210                                                 


Q ss_pred             CCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC---
Q 042539          229 VSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT---  304 (412)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~---  304 (412)
                                  .........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+......+..++...   
T Consensus       227 ------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~  294 (344)
T 1rjb_A          227 ------------NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKM  294 (344)
T ss_dssp             ------------TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCC
T ss_pred             ------------cceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCCC
Confidence                        0011234567899999999999999999999999999999998 999999876555555544432   


Q ss_pred             CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          305 PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       305 ~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ......++++.+||.+||..||.+||    ++.++++|
T Consensus       295 ~~~~~~~~~l~~li~~~l~~dp~~Rp----s~~~l~~~  328 (344)
T 1rjb_A          295 DQPFYATEEIYIIMQSCWAFDSRKRP----SFPNLTSF  328 (344)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCCchhCc----CHHHHHHH
Confidence            22334678999999999999999999    68888874

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=5.4e-47  Score=361.15  Aligned_cols=260  Identities=22%  Similarity=0.266  Sum_probs=207.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .++..++|++++.||+|+||+||+|+....+..+++.||||++....    ....+.+.+|++++++++||||+++++++
T Consensus         5 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   80 (295)
T 3ugc_A            5 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST----EEHLRDFEREIEILKSLQHDNIVKYKGVC   80 (295)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC----HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             CcCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC----HHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            57888999999999999999999999766566677789999997543    33456678899999999999999999998


Q ss_pred             Ee--CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           93 ET--DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        93 ~~--~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ..  ...+++|||||.||+|..++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        81 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg  159 (295)
T 3ugc_A           81 YSAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFG  159 (295)
T ss_dssp             CHHHHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCC
T ss_pred             ecCCCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCc
Confidence            64  457999999999999998876543 358999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++........                                                            ........|
T Consensus       160 ~~~~~~~~~~~------------------------------------------------------------~~~~~~~~~  179 (295)
T 3ugc_A          160 LTKVLPQDKEF------------------------------------------------------------FKVKEPGES  179 (295)
T ss_dssp             SCC-------------------------------------------------------------------------CTTC
T ss_pred             ccccccCCcce------------------------------------------------------------eeeccCCCC
Confidence            99765321110                                                            011123457


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH----------------HHHHHHhcC--CCCCCCCCh
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK----------------ETFRNVLMK--TPEFVGQRT  312 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~----------------~~~~~i~~~--~~~~~~~~~  312 (412)
                      |..|+|||++.+..++.++|||||||++|+|++|..||......                .....+...  .+....+++
T Consensus       180 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (295)
T 3ugc_A          180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPD  259 (295)
T ss_dssp             GGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCH
T ss_pred             ccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCH
Confidence            88899999999999999999999999999999999998753221                111122211  123345789


Q ss_pred             HHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          313 ALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       313 ~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ++.+||.+||..||++||    ++.++++
T Consensus       260 ~l~~li~~~l~~dp~~Rp----s~~el~~  284 (295)
T 3ugc_A          260 EIYMIMTECWNNNVNQRP----SFRDLAL  284 (295)
T ss_dssp             HHHHHHHHHSCSSGGGSC----CHHHHHH
T ss_pred             HHHHHHHHHcCCChhhCC----CHHHHHH
Confidence            999999999999999999    6788775

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.3e-47  Score=369.39  Aligned_cols=267  Identities=16%  Similarity=0.248  Sum_probs=217.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..++..++|++++.||+|+||.||+|++... +..++..||||++....   .......+.+|+.+++.++||||+++++
T Consensus        24 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~  100 (327)
T 2yfx_A           24 LKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIG  100 (327)
T ss_dssp             SCBCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc---chhhHHHHHHHHHHHhhCCCCCCCeEEE
Confidence            4567889999999999999999999986432 22355679999996442   2234556778999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC---C
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQND-----RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS---G  162 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~-----~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~---g  162 (412)
                      ++.+....|+|||||.|++|..++.....     ..+++.++..++.||+.||.|||++||+||||||+|||++.+   +
T Consensus       101 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~  180 (327)
T 2yfx_A          101 VSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGR  180 (327)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTC
T ss_pred             EEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcc
Confidence            99999999999999999999998876532     348999999999999999999999999999999999999954   4


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+++.......                                                             .
T Consensus       181 ~~kl~Dfg~~~~~~~~~~-------------------------------------------------------------~  199 (327)
T 2yfx_A          181 VAKIGDFGMARDIYRASY-------------------------------------------------------------Y  199 (327)
T ss_dssp             CEEECCCHHHHHHHC-----------------------------------------------------------------
T ss_pred             eEEECccccccccccccc-------------------------------------------------------------c
Confidence            699999999976532110                                                             1


Q ss_pred             CCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQ  319 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~  319 (412)
                      .......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ......+..+.+||.
T Consensus       200 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  279 (327)
T 2yfx_A          200 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMT  279 (327)
T ss_dssp             --CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             ccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Confidence            11234568999999999999899999999999999999998 999999988888777776543  223456789999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~  346 (412)
                      +||..||.+||    ++.++++|.|+-
T Consensus       280 ~~l~~dp~~Rp----s~~~ll~~l~~~  302 (327)
T 2yfx_A          280 QCWQHQPEDRP----NFAIILERIEYC  302 (327)
T ss_dssp             HHTCSSGGGSC----CHHHHHHHHHHH
T ss_pred             HHhcCChhhCc----CHHHHHHHHHHH
Confidence            99999999999    699999987754

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=5e-47  Score=366.98  Aligned_cols=261  Identities=22%  Similarity=0.345  Sum_probs=215.3

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccce
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPK   87 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~   87 (412)
                      ....+.+..++|++.+.||+|+||.||+|+++.++..  ..+|+|+++...   .......+.+|+.+++++ +||||++
T Consensus        16 ~~~~p~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~--~~v~iK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~   90 (327)
T 1fvr_A           16 PTIYPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLR--MDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIIN   90 (327)
T ss_dssp             CCCSSBCCGGGCEEEEEEECGGGCEEEEEEEEETTEE--EEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCC
T ss_pred             CcccccccHHHccceeeeecCCCceEEEEEEccCCcc--cceeeeeecccc---chHHHHHHHHHHHHHHhccCCCchhh
Confidence            4456778899999999999999999999998775432  125999986532   223445677899999999 8999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP  153 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp  153 (412)
                      +++++.+.+.+|+|||||.||+|..++....              ...+++.+++.++.||+.||.|||++||+||||||
T Consensus        91 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp  170 (327)
T 1fvr_A           91 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAA  170 (327)
T ss_dssp             EEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSG
T ss_pred             hceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCcc
Confidence            9999999999999999999999998876542              23599999999999999999999999999999999


Q ss_pred             CceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          154 ENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       154 ~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                      +|||++.+|.+||+|||+++....                                                        
T Consensus       171 ~NIl~~~~~~~kL~Dfg~~~~~~~--------------------------------------------------------  194 (327)
T 1fvr_A          171 RNILVGENYVAKIADFGLSRGQEV--------------------------------------------------------  194 (327)
T ss_dssp             GGEEECGGGCEEECCTTCEESSCE--------------------------------------------------------
T ss_pred             ceEEEcCCCeEEEcccCcCccccc--------------------------------------------------------
Confidence            999999999999999999864311                                                        


Q ss_pred             ccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCC
Q 042539          234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQ  310 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~  310 (412)
                              ........+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ......
T Consensus       195 --------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  266 (327)
T 1fvr_A          195 --------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNC  266 (327)
T ss_dssp             --------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTB
T ss_pred             --------cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCCCCCCCC
Confidence                    011123357889999999998889999999999999999998 999999998888777766542  223456


Q ss_pred             ChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       311 ~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ++++.+||.+||..||.+||    ++++++++
T Consensus       267 ~~~l~~li~~~l~~dp~~Rp----s~~ell~~  294 (327)
T 1fvr_A          267 DDEVYDLMRQCWREKPYERP----SFAQILVS  294 (327)
T ss_dssp             CHHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             CHHHHHHHHHHccCChhhCc----CHHHHHHH
Confidence            78999999999999999999    68888864

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.3e-47  Score=359.98  Aligned_cols=263  Identities=27%  Similarity=0.405  Sum_probs=211.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ......++|.....||+|+||.||+|++..++    +.||||++.....    ...+.+.+|+.+++.++||||++++++
T Consensus        16 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~----~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~   87 (295)
T 2clq_A           16 EYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQ----VRIAIKEIPERDS----RYSQPLHEEIALHKHLKHKNIVQYLGS   87 (295)
T ss_dssp             CEEECBCTTSSBCEEEECSSSEEEEEEETTTC----CEEEEEEEECCCC-------HHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             cccccccCCCCcEEEeecCcEEEEEEEECCCC----eEEEEEEccCCch----HHHHHHHHHHHHHHhCCCCCEeeEeeE
Confidence            34566677777889999999999999987754    4499999976432    234567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-CCCEEEccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-SGHVTLTDF  169 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-~g~vkL~DF  169 (412)
                      +.+.+.+++||||+.|++|..++.... ...+++..++.++.||+.||.|||++||+||||||+|||++. +|.+||+||
T Consensus        88 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Df  167 (295)
T 2clq_A           88 FSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDF  167 (295)
T ss_dssp             EEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCT
T ss_pred             EEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeec
Confidence            999999999999999999998887643 234678999999999999999999999999999999999998 899999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.....                                                               ........
T Consensus       168 g~~~~~~~~---------------------------------------------------------------~~~~~~~~  184 (295)
T 2clq_A          168 GTSKRLAGI---------------------------------------------------------------NPCTETFT  184 (295)
T ss_dssp             TTCEESCC--------------------------------------------------------------------CCCC
T ss_pred             ccccccCCC---------------------------------------------------------------CCcccccC
Confidence            999754211                                                               01123457


Q ss_pred             cCCCCccceeecCCC--CCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HH-HHHHh-cCCCCC-CCCChHHHHHHHHhhh
Q 042539          250 GTEEYVSPEVVRGDG--HEFAVDWWALGILTYEMLYGTTPFRGKNRK-ET-FRNVL-MKTPEF-VGQRTALTDLIQRLLE  323 (412)
Q Consensus       250 gt~~Y~APE~l~~~~--~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~-~~~i~-~~~~~~-~~~~~~~~dli~~~L~  323 (412)
                      ||+.|+|||++.+..  ++.++|||||||++|+|++|+.||...... .. ..... ...+.. ...++++.+||.+||.
T Consensus       185 ~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  264 (295)
T 2clq_A          185 GTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFE  264 (295)
T ss_dssp             CCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTC
T ss_pred             CCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHHHHHcc
Confidence            999999999997653  789999999999999999999999764322 22 22211 222232 3568899999999999


Q ss_pred             hCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          324 KDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      .||++||    +++++++|+||+...
T Consensus       265 ~dp~~Rp----s~~~ll~~~~~~~~~  286 (295)
T 2clq_A          265 PDPDKRA----CANDLLVDEFLKVSS  286 (295)
T ss_dssp             SSTTTSC----CHHHHHTSGGGCC--
T ss_pred             CChhhCC----CHHHHhcChhhhhcc
Confidence            9999999    699999999998543

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=8.4e-47  Score=362.95  Aligned_cols=259  Identities=25%  Similarity=0.394  Sum_probs=198.9

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+.+++|++++.||+|+||.||+|+++.++.    .||||++.....  .....+.+..+..+++.++||||+++++++
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~   93 (318)
T 2dyl_A           20 YQAEINDLENLGEMGSGTCGQVWKMRFRKTGH----VIAVKQMRRSGN--KEENKRILMDLDVVLKSHDCPYIVQCFGTF   93 (318)
T ss_dssp             EECCGGGEEEEEEC------CEEEEEETTTCC----EEEEEEEETTSC--HHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             hhhhhccccccceeeecCCeeEEEEEEecCCe----EEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCceeeEEEEE
Confidence            45678999999999999999999999987544    499999976542  222334444455678888999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCCCEEEccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .+++.+|+||||+ |+.+..+... ....+++..++.++.||+.||.|||++ ||+||||||+|||++.+|.+||+|||+
T Consensus        94 ~~~~~~~lv~e~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  171 (318)
T 2dyl_A           94 ITNTDVFIAMELM-GTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGI  171 (318)
T ss_dssp             ECSSEEEEEECCC-SEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             ecCCcEEEEEecc-CCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCC
Confidence            9999999999999 5555544433 235699999999999999999999995 999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.....                                                                .......||
T Consensus       172 ~~~~~~~----------------------------------------------------------------~~~~~~~~~  187 (318)
T 2dyl_A          172 SGRLVDD----------------------------------------------------------------KAKDRSAGC  187 (318)
T ss_dssp             C------------------------------------------------------------------------------C
T ss_pred             chhccCC----------------------------------------------------------------ccccccCCC
Confidence            8754211                                                                111234689


Q ss_pred             CCCccceeec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcCCCC----CCCCChHHHHHHHHh
Q 042539          252 EEYVSPEVVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMKTPE----FVGQRTALTDLIQRL  321 (412)
Q Consensus       252 ~~Y~APE~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~~~~----~~~~~~~~~dli~~~  321 (412)
                      +.|+|||++.     +..++.++|||||||++|+|++|+.||.. ....+.+..+....+.    ....++++.+||.+|
T Consensus       188 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  267 (318)
T 2dyl_A          188 AAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDC  267 (318)
T ss_dssp             CTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHH
T ss_pred             ccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHH
Confidence            9999999995     45678999999999999999999999987 4555666666654432    234689999999999


Q ss_pred             hhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          322 LEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      |..||.+||    +++++++||||++
T Consensus       268 l~~dp~~Rp----s~~~ll~h~~~~~  289 (318)
T 2dyl_A          268 LTKDHRKRP----KYNKLLEHSFIKR  289 (318)
T ss_dssp             TCSCTTTSC----CHHHHTTSHHHHH
T ss_pred             ccCChhHCc----CHHHHhhCHHHHh
Confidence            999999999    6999999999974

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=4.4e-47  Score=360.07  Aligned_cols=257  Identities=21%  Similarity=0.286  Sum_probs=219.6

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      -..+++..++|++.+.||+|+||+||+|.++.++    ..||+|++.....     ....+.+|++++++++||||++++
T Consensus         5 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~   75 (288)
T 3kfa_A            5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYS----LTVAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLL   75 (288)
T ss_dssp             CCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGT----EEEEEEEECSCST-----HHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             hhcccccccceeEEeecCCCCceeEEEeEecCCC----EEEEEEecCcCHH-----HHHHHHHHHHHHHhCCCCCEeeEE
Confidence            3577889999999999999999999999998754    4499999975432     245567799999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.+++.+|+||||+.|++|..++.......+++..+..++.||+.||.|||++||+||||||+||+++.+|.+||+||
T Consensus        76 ~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Df  155 (288)
T 3kfa_A           76 GVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADF  155 (288)
T ss_dssp             EEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             EEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccC
Confidence            99999999999999999999999887766667999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.....                                                              .........
T Consensus       156 g~~~~~~~~--------------------------------------------------------------~~~~~~~~~  173 (288)
T 3kfa_A          156 GLSRLMTGD--------------------------------------------------------------TYTAHAGAK  173 (288)
T ss_dssp             CGGGTSCSS--------------------------------------------------------------SSEEETTEE
T ss_pred             ccceeccCC--------------------------------------------------------------ccccccCCc
Confidence            999754211                                                              001122345


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+.......+....  ......++.+.+||.+||..||
T Consensus       174 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  253 (288)
T 3kfa_A          174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNP  253 (288)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             cccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCCh
Confidence            7889999999999999999999999999999999 999999988777666655432  2334578999999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||    +++++++
T Consensus       254 ~~Rp----s~~~~~~  264 (288)
T 3kfa_A          254 SDRP----SFAEIHQ  264 (288)
T ss_dssp             GGSC----CHHHHHH
T ss_pred             hhCc----CHHHHHH
Confidence            9999    6888875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=5.9e-47  Score=359.35  Aligned_cols=253  Identities=18%  Similarity=0.226  Sum_probs=210.7

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCC---CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPT---ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      .++..++|++++.||+|+||+||+|+++.++..   .+..||+|++.+...    ...+.+.+|+.++++++||||++++
T Consensus         3 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~   78 (289)
T 4fvq_A            3 HKIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHR----NYSESFFEAASMMSKLSHKHLVLNY   78 (289)
T ss_dssp             CBCCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGG----GGHHHHHHHHHHHHTSCCTTBCCEE
T ss_pred             EEechhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccH----HHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            467889999999999999999999998765421   123599999966432    2345677899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC------
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH------  163 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~------  163 (412)
                      +++.+++..|+|||||.||+|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.      
T Consensus        79 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~  157 (289)
T 4fvq_A           79 GVCVCGDENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNP  157 (289)
T ss_dssp             EEECCTTCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBC
T ss_pred             EEEEeCCCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCccccccc
Confidence            99999999999999999999998887543 34899999999999999999999999999999999999999987      


Q ss_pred             --EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          164 --VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       164 --vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                        +||+|||+++.....                                                               
T Consensus       158 ~~~kl~Dfg~~~~~~~~---------------------------------------------------------------  174 (289)
T 4fvq_A          158 PFIKLSDPGISITVLPK---------------------------------------------------------------  174 (289)
T ss_dssp             CEEEECCCCSCTTTSCH---------------------------------------------------------------
T ss_pred             ceeeeccCcccccccCc---------------------------------------------------------------
Confidence              999999998654211                                                               


Q ss_pred             CCCCcccccCCCCccceeecC-CCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHH
Q 042539          242 GERSNSFVGTEEYVSPEVVRG-DGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQ  319 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~  319 (412)
                          ....||+.|+|||++.+ ..++.++|||||||++|+|++ |.+||...+..................++++.+||.
T Consensus       175 ----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  250 (289)
T 4fvq_A          175 ----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLIN  250 (289)
T ss_dssp             ----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCSSCTTHHHHH
T ss_pred             ----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCCCCCHHHHHHHH
Confidence                13358889999999988 668999999999999999999 566777766665554444433334455788999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhc
Q 042539          320 RLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +||+.||.+||    ++.++++
T Consensus       251 ~~l~~dp~~Rp----s~~~ll~  268 (289)
T 4fvq_A          251 NCMDYEPDHRP----SFRAIIR  268 (289)
T ss_dssp             HHSCSSGGGSC----CHHHHHH
T ss_pred             HHcCCChhHCc----CHHHHHH
Confidence            99999999999    6888886

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.9e-46  Score=358.14  Aligned_cols=272  Identities=18%  Similarity=0.206  Sum_probs=216.8

Q ss_pred             CCCCCCCCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC
Q 042539            2 EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS   81 (412)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~   81 (412)
                      +.++++.+.....+..++|++++.||+|+||.||+|++...+..+++.||+|++.....   ......+.+|+++++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~   81 (302)
T 4e5w_A            5 SEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG---GNHIADLKKEIEILRNLY   81 (302)
T ss_dssp             CCCCCCCCCCTTBCCGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCC
T ss_pred             cccCcceecChhhhhhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEeccccc---chhHHHHHHHHHHHHhCC
Confidence            45666666777788899999999999999999999997665666778899999975532   123456778999999999


Q ss_pred             CCccceeeeeEEeC--CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc
Q 042539           82 HPFLPKLLGSLETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR  159 (412)
Q Consensus        82 hpnIv~l~~~~~~~--~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~  159 (412)
                      ||||+++++++.+.  ..+|+|||||.||+|..++.... ..+++.++..++.|++.||+|||++||+||||||+|||++
T Consensus        82 h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~  160 (302)
T 4e5w_A           82 HENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE  160 (302)
T ss_dssp             CTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE
T ss_pred             CCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEc
Confidence            99999999999876  67999999999999998885543 4599999999999999999999999999999999999999


Q ss_pred             cCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc
Q 042539          160 QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF  239 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      .+|.+||+|||+++.......                                                           
T Consensus       161 ~~~~~kl~Dfg~~~~~~~~~~-----------------------------------------------------------  181 (302)
T 4e5w_A          161 SEHQVKIGDFGLTKAIETDKE-----------------------------------------------------------  181 (302)
T ss_dssp             ETTEEEECCCTTCEECCTTCC-----------------------------------------------------------
T ss_pred             CCCCEEECcccccccccCCCc-----------------------------------------------------------
Confidence            999999999999976532110                                                           


Q ss_pred             CCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC--------------CHHH-HHHHHhcC-
Q 042539          240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK--------------NRKE-TFRNVLMK-  303 (412)
Q Consensus       240 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~--------------~~~~-~~~~i~~~-  303 (412)
                       .........||..|+|||++.+..++.++|||||||++|+|++|..|+...              .... ....+... 
T Consensus       182 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (302)
T 4e5w_A          182 -YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGK  260 (302)
T ss_dssp             -EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTC
T ss_pred             -ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccC
Confidence             001123446888999999999999999999999999999999999876432              1122 22222221 


Q ss_pred             -CCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          304 -TPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       304 -~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                       .+.....++++.+||.+||..||.+||    ++.++++
T Consensus       261 ~~~~~~~~~~~l~~li~~~l~~dp~~Rp----s~~~ll~  295 (302)
T 4e5w_A          261 RLPCPPNCPDEVYQLMRKCWEFQPSNRT----SFQNLIE  295 (302)
T ss_dssp             CCCCCTTCCHHHHHHHHHTTCSSGGGSC----CHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCCCCCCC----CHHHHHH
Confidence             122346789999999999999999999    6888775

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=6.5e-47  Score=366.76  Aligned_cols=262  Identities=19%  Similarity=0.281  Sum_probs=216.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ..++..++|++++.||+|+||+||+|.+..++. .....||+|++....   .......+.+|+.+++.+ +||||++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~  116 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA---HADEKEALMSELKIMSHLGQHENIVNLL  116 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc---ChHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            567788999999999999999999999877654 234569999996543   223456678899999999 799999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhC------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceE
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQN------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENIL  157 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiL  157 (412)
                      +++.+++.+|+|||||.||+|..++....            ...+++..+..++.||+.||.|||++||+||||||+|||
T Consensus       117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl  196 (333)
T 2i1m_A          117 GACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVL  196 (333)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCE
T ss_pred             EEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEE
Confidence            99999999999999999999998876542            235899999999999999999999999999999999999


Q ss_pred             EccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccc
Q 042539          158 IRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQ  237 (412)
Q Consensus       158 l~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.++.+||+|||+++.......                                                         
T Consensus       197 ~~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------------------  219 (333)
T 2i1m_A          197 LTNGHVAKIGDFGLARDIMNDSN---------------------------------------------------------  219 (333)
T ss_dssp             EEGGGEEEBCCCGGGCCGGGCTT---------------------------------------------------------
T ss_pred             ECCCCeEEECccccccccccccc---------------------------------------------------------
Confidence            99999999999999975532110                                                         


Q ss_pred             ccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC---CCCCCCChH
Q 042539          238 SFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT---PEFVGQRTA  313 (412)
Q Consensus       238 ~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~---~~~~~~~~~  313 (412)
                          ........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+......+..+....   ......++.
T Consensus       220 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (333)
T 2i1m_A          220 ----YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKN  295 (333)
T ss_dssp             ----SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCCCCCTTCCHH
T ss_pred             ----eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCCCCCCCCCHH
Confidence                011223467889999999999999999999999999999998 999999876555544444322   223346789


Q ss_pred             HHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          314 LTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       314 ~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +.+||.+||+.||.+||    ++.++++
T Consensus       296 l~~li~~~l~~~p~~Rp----s~~~l~~  319 (333)
T 2i1m_A          296 IYSIMQACWALEPTHRP----TFQQICS  319 (333)
T ss_dssp             HHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             HHHHHHHHhccChhhCc----CHHHHHH
Confidence            99999999999999999    6888876

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.2e-46  Score=371.64  Aligned_cols=261  Identities=23%  Similarity=0.305  Sum_probs=206.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..++..++|++.+.||+|+||+||+|+++..+. .+..||||+++...   .....+.+.+|+.++++++||||++++++
T Consensus        39 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~  114 (373)
T 2qol_A           39 AKELDATNISIDKVVGAGEFGEVCSGRLKLPSK-KEISVAIKTLKVGY---TEKQRRDFLGEASIMGQFDHPNIIRLEGV  114 (373)
T ss_dssp             SCBCCGGGCCCCEEEEECSSSEEEEC-CBCTTS-CBCCEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             HhhcCHhhceeeeEEeeCCCeEEEEEEEecCCC-CceeEEEEEecCcc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            446778899999999999999999998763322 34559999997543   23345678889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+|||||.||+|..++... ...+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus       115 ~~~~~~~~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~  193 (373)
T 2qol_A          115 VTKSKPVMIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGL  193 (373)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC--
T ss_pred             EeeCCceEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCcc
Confidence            99999999999999999999888654 34599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++........                                                            ........+|
T Consensus       194 a~~~~~~~~~------------------------------------------------------------~~~~~~~~~~  213 (373)
T 2qol_A          194 GRVLEDDPEA------------------------------------------------------------AYTTRGGKIP  213 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCcc------------------------------------------------------------ceeccCCCcC
Confidence            9765321100                                                            0011123467


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcC--CCCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMK--TPEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+....+...  .+.....+..+.+||.+||+.||.+
T Consensus       214 ~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~  293 (373)
T 2qol_A          214 IRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNN  293 (373)
T ss_dssp             CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGG
T ss_pred             CCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhh
Confidence            89999999999999999999999999999997 99999998888877776543  2334467789999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       294 RP----s~~~i~~  302 (373)
T 2qol_A          294 RP----KFEQIVS  302 (373)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5777764

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=6.6e-47  Score=354.93  Aligned_cols=250  Identities=18%  Similarity=0.251  Sum_probs=213.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||+||+|++.      +..||+|+++.....  ....+.+.+|+.++++++||||++++++
T Consensus         4 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~------~~~~avK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~   75 (271)
T 3kmu_A            4 HSGIDFKQLNFLTKLNENHSGELWKGRWQ------GNDIVVKVLKVRDWS--TRKSRDFNEECPRLRIFSHPNVLPVLGA   75 (271)
T ss_dssp             CCCCCGGGCEEEEEEEEETTEEEEEEEET------TEEEEEEEECCTTCC--HHHHHHHHHHGGGGCCCSCTTEECEEEE
T ss_pred             cCCCCHHHhHHHHHhcCCCcceEEEEEEC------CeeEEEEEecccccC--HHHHHHHHHHHHHHHhcCCCchhheEEE
Confidence            46789999999999999999999999985      234999999775432  2345668889999999999999999999


Q ss_pred             EEeC--CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccCCCEEEc
Q 042539           92 LETD--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        92 ~~~~--~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      +.+.  ..+++|||||.||+|..++.......+++.++..++.||+.||.|||++|  |+||||||+|||++.+|.++|+
T Consensus        76 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~  155 (271)
T 3kmu_A           76 CQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARIS  155 (271)
T ss_dssp             ECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEE
T ss_pred             EccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEE
Confidence            9877  78999999999999999987765556999999999999999999999999  9999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||++....                                                                    ...
T Consensus       156 ~~~~~~~~~--------------------------------------------------------------------~~~  167 (271)
T 3kmu_A          156 MADVKFSFQ--------------------------------------------------------------------SPG  167 (271)
T ss_dssp             GGGSCCTTS--------------------------------------------------------------------CTT
T ss_pred             eccceeeec--------------------------------------------------------------------ccC
Confidence            998764321                                                                    113


Q ss_pred             cccCCCCccceeecCCCCC---chhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---CCCCCChHHHHHHHHh
Q 042539          248 FVGTEEYVSPEVVRGDGHE---FAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP---EFVGQRTALTDLIQRL  321 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~---~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~dli~~~  321 (412)
                      .+||+.|+|||++.+..++   .++|||||||++|+|++|+.||.+.+..+....+.....   .....++++.+||.+|
T Consensus       168 ~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  247 (271)
T 3kmu_A          168 RMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKIC  247 (271)
T ss_dssp             CBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence            4689999999999886554   489999999999999999999999888887766664432   2245689999999999


Q ss_pred             hhhCCCccCCCCCChhhhhc
Q 042539          322 LEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |+.||.+||    +++++++
T Consensus       248 l~~~p~~Rp----s~~~il~  263 (271)
T 3kmu_A          248 MNEDPAKRP----KFDMIVP  263 (271)
T ss_dssp             TCSSGGGSC----CHHHHHH
T ss_pred             cCCChhhCc----CHHHHHH
Confidence            999999999    6888875

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.5e-46  Score=357.99  Aligned_cols=269  Identities=26%  Similarity=0.413  Sum_probs=204.8

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--   94 (412)
                      .++|++++.||+|+||.||+|++..++    +.||||++...     ......+.+|+.+++.++||||+++++++.+  
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   75 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDS----RYYAIKKIRHT-----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERR   75 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTC----CEEEEEEEEEE-----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECC
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCC----eEEEEEEEecc-----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence            368999999999999999999987654    44999999653     2334567789999999999999999998865  


Q ss_pred             -----------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC
Q 042539           95 -----------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH  163 (412)
Q Consensus        95 -----------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~  163 (412)
                                 ...+|+|||||.||+|..++.... ..+++..+..++.|++.||+|||++||+||||||+|||++.+|.
T Consensus        76 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~  154 (303)
T 1zy4_A           76 NFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRN  154 (303)
T ss_dssp             CCCC------CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSC
T ss_pred             chhhhhcccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCC
Confidence                       457899999999999998887533 45888999999999999999999999999999999999999999


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+++............  .                                               ........
T Consensus       155 ~kl~dfg~~~~~~~~~~~~~~~--~-----------------------------------------------~~~~~~~~  185 (303)
T 1zy4_A          155 VKIGDFGLAKNVHRSLDILKLD--S-----------------------------------------------QNLPGSSD  185 (303)
T ss_dssp             EEECCCCCCSCTTC------------------------------------------------------------------
T ss_pred             EEEeeCcchhhcccccchhccc--c-----------------------------------------------cccccccc
Confidence            9999999997653221100000  0                                               00000112


Q ss_pred             CCcccccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcCCCCC-----CCCChHHHH
Q 042539          244 RSNSFVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMKTPEF-----VGQRTALTD  316 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~~~~~-----~~~~~~~~d  316 (412)
                      .....+||+.|+|||++.+. .++.++|||||||++|+|++   ||.. .+.......+......+     ...+..+.+
T Consensus       186 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (303)
T 1zy4_A          186 NLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKK  262 (303)
T ss_dssp             --------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHH
T ss_pred             ccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHHHHHhccccccccCccccccchHHHHH
Confidence            23456799999999999875 57999999999999999998   5543 33344455554433222     234577999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      ||.+||..||.+||    ++.++++||||+...++
T Consensus       263 li~~~l~~dp~~Rp----s~~~ll~h~~~~~~~~~  293 (303)
T 1zy4_A          263 IIRLLIDHDPNKRP----GARTLLNSGWLPVKHQD  293 (303)
T ss_dssp             HHHHHTCSSGGGSC----CHHHHHHSSCSCCCCHH
T ss_pred             HHHHHHhcCcccCc----CHHHHhCCCCcCCCChH
Confidence            99999999999999    69999999999987665

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.3e-47  Score=364.68  Aligned_cols=256  Identities=27%  Similarity=0.404  Sum_probs=200.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH--HHHHHHHHHHHHHhhc----CCCccc
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH--EAERRARWEIRVLSRL----SHPFLP   86 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~~~Ei~il~~l----~hpnIv   86 (412)
                      .+...++|++++.||+|+||.||+|++..++    +.||||++.........  .....+.+|+.++.++    +|+||+
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~  101 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDR----LQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVI  101 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTC----CEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBC
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCC----eEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCee
Confidence            3556789999999999999999999887654    44999999765432211  1233455699999999    899999


Q ss_pred             eeeeeEEeCCeEEEEeec-cCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc-cCCCE
Q 042539           87 KLLGSLETDEFLAWAVPY-CPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR-QSGHV  164 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~-~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~-~~g~v  164 (412)
                      ++++++.+.+..++|||+ +.|++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++ .+|.+
T Consensus       102 ~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~  179 (312)
T 2iwi_A          102 RLLDWFETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCA  179 (312)
T ss_dssp             CEEEEC-----CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEE
T ss_pred             eEEEEEecCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeE
Confidence            999999999999999999 78999998887654  499999999999999999999999999999999999999 78999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+|||+++....                                                                 ..
T Consensus       180 kl~dfg~~~~~~~-----------------------------------------------------------------~~  194 (312)
T 2iwi_A          180 KLIDFGSGALLHD-----------------------------------------------------------------EP  194 (312)
T ss_dssp             EECCCSSCEECCS-----------------------------------------------------------------SC
T ss_pred             EEEEcchhhhccc-----------------------------------------------------------------Cc
Confidence            9999999875421                                                                 11


Q ss_pred             CcccccCCCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhh
Q 042539          245 SNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLL  322 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L  322 (412)
                      .....||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.+..      .+......+ ...+.++.+||.+||
T Consensus       195 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~li~~~l  268 (312)
T 2iwi_A          195 YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAELHFPAHVSPDCCALIRRCL  268 (312)
T ss_dssp             BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHTCCCCCTTSCHHHHHHHHHHT
T ss_pred             ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------HHhhhccCCcccCCHHHHHHHHHHc
Confidence            224569999999999987766 569999999999999999999997632      222222222 456889999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      ..||++||    +++++++|+||+...
T Consensus       269 ~~~p~~Rp----s~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          269 APKPSSRP----SLEEILLDPWMQTPA  291 (312)
T ss_dssp             CSSTTTSC----CHHHHHHSTTTCC--
T ss_pred             cCChhhCc----CHHHHhcChhhcCch
Confidence            99999999    699999999998654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-46  Score=363.88  Aligned_cols=262  Identities=20%  Similarity=0.297  Sum_probs=214.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..++..++|++.+.||+|+||+||+|.++..+...+..||||+++...   .......+.+|+.+++.++||||++++++
T Consensus        38 ~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~  114 (333)
T 1mqb_A           38 TTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TEKQRVDFLGEAGIMGQFSHHNIIRLEGV  114 (333)
T ss_dssp             CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             cccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            457788999999999999999999999877655555679999997543   22345567889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+.+.+|+|||||.||+|..++... ...+++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus       115 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  193 (333)
T 1mqb_A          115 ISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGL  193 (333)
T ss_dssp             ECSSSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             EecCCCcEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCc
Confidence            99999999999999999999887654 34699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.......                                                            .........+|
T Consensus       194 ~~~~~~~~~------------------------------------------------------------~~~~~~~~~~~  213 (333)
T 1mqb_A          194 SRVLEDDPE------------------------------------------------------------ATYTTSGGKIP  213 (333)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             chhhccccc------------------------------------------------------------cccccCCCCcc
Confidence            976532110                                                            00011123468


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  +.....++.+.++|.+||..||.+
T Consensus       214 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  293 (333)
T 1mqb_A          214 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERAR  293 (333)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTT
T ss_pred             ccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhh
Confidence            89999999999999999999999999999998 999999988888877776542  333456789999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       294 Rp----s~~~l~~  302 (333)
T 1mqb_A          294 RP----KFADIVS  302 (333)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5788775

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=365.02  Aligned_cols=260  Identities=20%  Similarity=0.251  Sum_probs=209.7

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||+||+|++..++......||+|.+.....   ......+.+|+.+++.++||||++++++
T Consensus         9 ~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~   85 (327)
T 3lzb_A            9 LRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGI   85 (327)
T ss_dssp             CEECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS---CCCHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred             hcccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC---HHHHHHHHHHHHHHHhCCCCCeeEEEEE
Confidence            4457789999999999999999999999887766444567777654321   2234567789999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.++. .++|++|+.+|+|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        86 ~~~~~-~~~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~  163 (327)
T 3lzb_A           86 CLTST-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGL  163 (327)
T ss_dssp             EESSS-EEEEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC
T ss_pred             EecCC-ceEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcc
Confidence            98765 889999999999988876543 4599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.......                                                             ........||
T Consensus       164 a~~~~~~~~-------------------------------------------------------------~~~~~~~~~t  182 (327)
T 3lzb_A          164 AKLLGAEEK-------------------------------------------------------------EYHAEGGKVP  182 (327)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             eeEccCccc-------------------------------------------------------------cccccCCCcc
Confidence            976532110                                                             0111234578


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  +.....+.++.+||.+||..||.+
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  262 (327)
T 3lzb_A          183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADS  262 (327)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGG
T ss_pred             ccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhH
Confidence            89999999999999999999999999999999 999999988777666655433  333456789999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       263 Rp----s~~ell~  271 (327)
T 3lzb_A          263 RP----KFRELII  271 (327)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    6888886

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.3e-46  Score=357.95  Aligned_cols=261  Identities=20%  Similarity=0.316  Sum_probs=199.1

Q ss_pred             CCCCCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc
Q 042539            5 PPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF   84 (412)
Q Consensus         5 ~~~~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn   84 (412)
                      +++......++.-++|++.+.||+|+||+||++++..       .||+|+++....  .....+.+.+|+.++++++|+|
T Consensus        11 ~~~~~~~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~-------~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~   81 (289)
T 3og7_A           11 GSRDAADDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-------DVAVKMLNVTAP--TPQQLQAFKNEVGVLRKTRHVN   81 (289)
T ss_dssp             -------CCBCCTTSCEEEEEEEECSSEEEEEEESSS-------EEEEEEESCSSC--CHHHHHHHHHHHHHHTTCCCTT
T ss_pred             CCCCCCCCCccCccceeeeeEecCCCCeEEEEEEEcC-------ceEEEEEeccCC--CHHHHHHHHHHHHHHHhCCCCc
Confidence            3444455679999999999999999999999997643       299999976543  2344567888999999999999


Q ss_pred             cceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCE
Q 042539           85 LPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHV  164 (412)
Q Consensus        85 Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~v  164 (412)
                      |++++++. ....+++|||||.|++|..++... ...+++..+..++.|++.||.|||++||+||||||+|||++.+|.+
T Consensus        82 iv~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~  159 (289)
T 3og7_A           82 ILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTV  159 (289)
T ss_dssp             BCCEEEEE-CSSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEE
T ss_pred             EEEEEeec-cCCccEEEEEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCE
Confidence            99999954 566789999999999998877543 3469999999999999999999999999999999999999999999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+|||+++.....                                                             .....
T Consensus       160 kl~Dfg~~~~~~~~-------------------------------------------------------------~~~~~  178 (289)
T 3og7_A          160 KIGDFGLATEKSRW-------------------------------------------------------------SGSHQ  178 (289)
T ss_dssp             EECCCC--------------------------------------------------------------------------
T ss_pred             EEccceeccccccc-------------------------------------------------------------ccccc
Confidence            99999999754211                                                             01112


Q ss_pred             CcccccCCCCccceeec---CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh-cCC--CC----CCCCChHH
Q 042539          245 SNSFVGTEEYVSPEVVR---GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL-MKT--PE----FVGQRTAL  314 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~---~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~-~~~--~~----~~~~~~~~  314 (412)
                      .....||+.|+|||++.   +..++.++|||||||++|+|++|+.||.+.+..+...... ...  +.    ...+++++
T Consensus       179 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  258 (289)
T 3og7_A          179 FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRM  258 (289)
T ss_dssp             -----CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHH
T ss_pred             ccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHH
Confidence            23457999999999987   5668899999999999999999999998865554444443 222  11    12567899


Q ss_pred             HHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          315 TDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       315 ~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+||.+||..||.+||    ++.++++
T Consensus       259 ~~li~~~l~~~p~~Rp----s~~ell~  281 (289)
T 3og7_A          259 KRLMAECLKKKRDERP----SFPRILA  281 (289)
T ss_dssp             HHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             HHHHHHHccCChhhCC----CHHHHHH
Confidence            9999999999999999    5788775

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2.4e-46  Score=355.09  Aligned_cols=256  Identities=22%  Similarity=0.302  Sum_probs=207.0

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHH---HHHHHHHHHHhhcCCCcc
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE---RRARWEIRVLSRLSHPFL   85 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~---~~~~~Ei~il~~l~hpnI   85 (412)
                      ....+.+..++|++++.||+|+||+||+|++..++.    .||+|++............   +.+.+|+.+++.++||||
T Consensus        10 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   85 (287)
T 4f0f_A           10 KSRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKS----VVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNI   85 (287)
T ss_dssp             --CCCBCCSTTEEEEEECCCCSSSCEEEEEETTTCC----EEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTB
T ss_pred             chhhhhhhhccceehhccccCCceeEEEEEEcCCce----EEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCc
Confidence            345667888999999999999999999999987544    4999999765443322222   567889999999999999


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccCCC
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQSGH  163 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~g~  163 (412)
                      +++++++.+..  ++||||+.||+|..++... ...+++..+..++.|++.||+|||++|  |+||||||+|||++.++.
T Consensus        86 ~~~~~~~~~~~--~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~  162 (287)
T 4f0f_A           86 VKLYGLMHNPP--RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDE  162 (287)
T ss_dssp             CCEEEEETTTT--EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCT
T ss_pred             hhhheeecCCC--eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCC
Confidence            99999997665  6999999999997776543 346999999999999999999999999  999999999999998886


Q ss_pred             -----EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          164 -----VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       164 -----vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                           +||+|||+++...                                                              
T Consensus       163 ~~~~~~kl~Dfg~~~~~~--------------------------------------------------------------  180 (287)
T 4f0f_A          163 NAPVCAKVADFGLSQQSV--------------------------------------------------------------  180 (287)
T ss_dssp             TCSCCEEECCCTTCBCCS--------------------------------------------------------------
T ss_pred             CCceeEEeCCCCcccccc--------------------------------------------------------------
Confidence                 9999999986431                                                              


Q ss_pred             cCCCCCCcccccCCCCccceeec--CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH--HHHHHhcCC---CCCCCCC
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVR--GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE--TFRNVLMKT---PEFVGQR  311 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~--~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~--~~~~i~~~~---~~~~~~~  311 (412)
                          ......+||+.|+|||++.  +..++.++|||||||++|+|++|+.||.+.+...  ....+....   ......+
T Consensus       181 ----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (287)
T 4f0f_A          181 ----HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCP  256 (287)
T ss_dssp             ----SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSC
T ss_pred             ----ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCcccC
Confidence                1122457999999999994  4456899999999999999999999998754332  233333222   1224567


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +++.+||.+||..||.+||    +++++++
T Consensus       257 ~~l~~li~~~l~~dp~~Rp----s~~~ll~  282 (287)
T 4f0f_A          257 PRLRNVIELCWSGDPKKRP----HFSYIVK  282 (287)
T ss_dssp             HHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             HHHHHHHHHHhcCChhhCc----CHHHHHH
Confidence            8999999999999999999    6888775

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3.2e-46  Score=350.06  Aligned_cols=253  Identities=19%  Similarity=0.271  Sum_probs=215.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ++.+..++|++++.||+|+||.||+|.+..     +..||+|++......     .+.+.+|+++++.++||||++++++
T Consensus         2 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~vaiK~~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~   71 (267)
T 3t9t_A            2 KWVIDPSELTFVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAMS-----EEDFIEEAEVMMKLSHPKLVQLYGV   71 (267)
T ss_dssp             -CBCCGGGEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTTBC-----HHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ceEEchhheeeeeEecCCCceeEEEEEecC-----CCeEEEEEccccCCC-----HHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            356788999999999999999999999863     234999999765432     2356779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+||||+.|++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+
T Consensus        72 ~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~  150 (267)
T 3t9t_A           72 CLEQAPICLVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGM  150 (267)
T ss_dssp             ECSSSSCEEEECCCTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTG
T ss_pred             EccCCCeEEEEeCCCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEccccc
Confidence            999999999999999999998876543 4589999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.......                                                              .......||
T Consensus       151 ~~~~~~~~~--------------------------------------------------------------~~~~~~~~~  168 (267)
T 3t9t_A          151 TRFVLDDQY--------------------------------------------------------------TSSTGTKFP  168 (267)
T ss_dssp             GGGBCCHHH--------------------------------------------------------------HSTTSTTCC
T ss_pred             ccccccccc--------------------------------------------------------------ccccccccc
Confidence            976532111                                                              011133578


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+.....  .....+..+.++|.+||..||.+
T Consensus       169 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  248 (267)
T 3t9t_A          169 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPED  248 (267)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhh
Confidence            89999999999889999999999999999999 9999999988888877766532  22345789999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       249 Rp----s~~~ll~  257 (267)
T 3t9t_A          249 RP----AFSRLLR  257 (267)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    6888875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.9e-46  Score=379.72  Aligned_cols=254  Identities=20%  Similarity=0.264  Sum_probs=214.1

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..+++..++|++.+.||+|+||+||+|.++.     +..||||+++....     ..+.+.+|+++|++++|||||++++
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~-----~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~l~~  250 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNK-----HTKVAVKTMKPGSM-----SVEAFLAEANVMKTLQHDKLVKLHA  250 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEETT-----TEEEEEEEECTTSB-----CHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEECC-----ccEEEEEEecCCCc-----cHHHHHHHHHHHhhCCCCCEeeEEE
Confidence            4567888999999999999999999998853     33499999976542     2345778999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++. ++.+|+|||||.||+|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus       251 ~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG  329 (454)
T 1qcf_A          251 VVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFG  329 (454)
T ss_dssp             EEC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTT
T ss_pred             EEe-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCC
Confidence            986 6679999999999999988875543358999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++........                                                              ......+
T Consensus       330 ~a~~~~~~~~~--------------------------------------------------------------~~~~~~~  347 (454)
T 1qcf_A          330 LARVIEDNEYT--------------------------------------------------------------AREGAKF  347 (454)
T ss_dssp             GGGGBCCHHHH--------------------------------------------------------------TTCSSSS
T ss_pred             CceEcCCCcee--------------------------------------------------------------ccCCCcc
Confidence            99865321110                                                              0112346


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |..|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+....+....  +....+++++.+||.+||..||+
T Consensus       348 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~  427 (454)
T 1qcf_A          348 PIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPE  427 (454)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             cccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence            788999999998899999999999999999999 999999999888877776543  33346789999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    +++++++
T Consensus       428 ~RP----t~~~i~~  437 (454)
T 1qcf_A          428 ERP----TFEYIQS  437 (454)
T ss_dssp             GSC----CHHHHHH
T ss_pred             HCc----CHHHHHH
Confidence            999    5777764

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=4.5e-46  Score=354.56  Aligned_cols=258  Identities=17%  Similarity=0.211  Sum_probs=207.9

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~   90 (412)
                      ...+..++|++++.||+|+||+||+|++..++    +.||||++.....      ...+.+|+.+++.+ +|+||+++++
T Consensus         4 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~------~~~~~~e~~~~~~l~~~~~i~~~~~   73 (298)
T 1csn_A            4 QNNVVGVHYKVGRRIGEGSFGVIFEGTNLLNN----QQVAIKFEPRRSD------APQLRDEYRTYKLLAGCTGIPNVYY   73 (298)
T ss_dssp             --CEETTTEEEEEEEEECSSCEEEEEEETTTT----EEEEEEEEECCTT------SCCHHHHHHHHHHTTTCTTCCCEEE
T ss_pred             cCcccccceEEEEEEeecCCEEEEEEEECCCC----cEEEEEEeccCCc------cHHHHHHHHHHHHHhcCCCCCeEEe
Confidence            34566789999999999999999999987644    4599999865432      12355699999999 6999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC-----EE
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH-----VT  165 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~-----vk  165 (412)
                      ++.++...|+||||+ |++|..++.... ..+++.++..++.||+.||.|||++||+||||||+|||++.+|.     +|
T Consensus        74 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~k  151 (298)
T 1csn_A           74 FGQEGLHNVLVIDLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIY  151 (298)
T ss_dssp             EEEETTEEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEE
T ss_pred             ecCCCceeEEEEEec-CCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEE
Confidence            999999999999999 999998887543 45999999999999999999999999999999999999988776     99


Q ss_pred             EccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCC
Q 042539          166 LTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERS  245 (412)
Q Consensus       166 L~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
                      |+|||+++........                                                        ........
T Consensus       152 l~Dfg~~~~~~~~~~~--------------------------------------------------------~~~~~~~~  175 (298)
T 1csn_A          152 VVDFGMVKFYRDPVTK--------------------------------------------------------QHIPYREK  175 (298)
T ss_dssp             ECCCTTCEESBCTTTC--------------------------------------------------------CBCCCCCC
T ss_pred             EEECcccccccccccc--------------------------------------------------------ccccccCc
Confidence            9999999865321100                                                        00011223


Q ss_pred             cccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC---CHHHHHHHHhcCCC------CCCCCChHHHH
Q 042539          246 NSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK---NRKETFRNVLMKTP------EFVGQRTALTD  316 (412)
Q Consensus       246 ~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~---~~~~~~~~i~~~~~------~~~~~~~~~~d  316 (412)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.   +..+.+..+.....      .....++++.+
T Consensus       176 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  255 (298)
T 1csn_A          176 KNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYK  255 (298)
T ss_dssp             CCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHH
T ss_pred             cCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHH
Confidence            4668999999999999999999999999999999999999999884   34444444432211      12367899999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhc
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ||.+||..||.+||    +++++++
T Consensus       256 li~~~l~~dp~~RP----~~~~l~~  276 (298)
T 1csn_A          256 YMHYARNLAFDATP----DYDYLQG  276 (298)
T ss_dssp             HHHHHHHCCTTCCC----CHHHHHH
T ss_pred             HHHHHhcCCcccCC----CHHHHHH
Confidence            99999999999999    5666654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2.2e-46  Score=378.76  Aligned_cols=248  Identities=23%  Similarity=0.334  Sum_probs=211.3

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .+.+..++|++++.||+|+||+||++.+..      +.||||+++...      ..+.+.+|+++|++++|||||+++++
T Consensus       187 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~------~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~  254 (450)
T 1k9a_A          187 GWALNMKELKLLQTIGKGEFGDVMLGDYRG------NKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGV  254 (450)
T ss_dssp             TCBCCGGGEEEEEEEEECSSEEEEEEEETT------EEEEEEEESSCT------TSHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccccChHHeEEEeeecCcCCeeEEEEEecC------CeEEEEEeCCch------HHHHHHHHHHHHHhccCCCEEEEEEE
Confidence            457889999999999999999999998752      349999997643      23456779999999999999999999


Q ss_pred             EEeCC-eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           92 LETDE-FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        92 ~~~~~-~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +...+ .+|+|||||.||+|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.+|.+||+|||
T Consensus       255 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG  334 (450)
T 1k9a_A          255 IVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFG  334 (450)
T ss_dssp             EECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             EEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCC
Confidence            87665 79999999999999999887765568999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++....                                                                  ......+
T Consensus       335 ~a~~~~~------------------------------------------------------------------~~~~~~~  348 (450)
T 1k9a_A          335 LTKEASS------------------------------------------------------------------TQDTGKL  348 (450)
T ss_dssp             TCEECC------------------------------------------------------------------------CC
T ss_pred             Ccccccc------------------------------------------------------------------cccCCCC
Confidence            9974311                                                                  0112257


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |+.|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+....+..+.  +....+++++.+||.+||..||.
T Consensus       349 ~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~  428 (450)
T 1k9a_A          349 PVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAA  428 (450)
T ss_dssp             CTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             CcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChh
Confidence            889999999999999999999999999999998 999999987777777666542  23345789999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    ++.++++
T Consensus       429 ~Rp----t~~~l~~  438 (450)
T 1k9a_A          429 TRP----TFLQLRE  438 (450)
T ss_dssp             GSC----CHHHHHH
T ss_pred             HCc----CHHHHHH
Confidence            999    5777764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=2.7e-46  Score=353.80  Aligned_cols=261  Identities=21%  Similarity=0.280  Sum_probs=214.2

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      .+...+..++|++.+.||+|+||+||+|++..... .+..||+|++.+..   .......+.+|+.+++.++||||++++
T Consensus         4 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~   79 (281)
T 3cc6_A            4 GPQYGIAREDVVLNRILGEGFFGEVYEGVYTNHKG-EKINVAVKTCKKDC---TLDNKEKFMSEAVIMKNLDHPHIVKLI   79 (281)
T ss_dssp             CCCCSCCGGGEEEEEEEEECSSSEEEEEEEECTTC-CEEEEEEEECCTTS---CHHHHHHHHHHHHHHHHHCCTTBCCEE
T ss_pred             CccceecccceEEEEEEEecCCeeEEEeEEcCCCC-CcceEEEEeccccc---CchHHHHHHHHHHHHHhCCCCCcceEE
Confidence            35668889999999999999999999998765332 34569999997653   223456788899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.++ ..|+||||+.|++|..++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.+|.+||+||
T Consensus        80 ~~~~~~-~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Df  157 (281)
T 3cc6_A           80 GIIEEE-PTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDF  157 (281)
T ss_dssp             EEECSS-SCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCC
T ss_pred             EEEcCC-CCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCcc
Confidence            998754 5689999999999998886543 45899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++......                                                              ........
T Consensus       158 g~~~~~~~~~--------------------------------------------------------------~~~~~~~~  175 (281)
T 3cc6_A          158 GLSRYIEDED--------------------------------------------------------------YYKASVTR  175 (281)
T ss_dssp             CGGGCC-----------------------------------------------------------------------CCC
T ss_pred             CCCccccccc--------------------------------------------------------------ccccccCC
Confidence            9997542210                                                              01112345


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++ |+.||...+..+....+....  +.....++.+.++|.+||..||
T Consensus       176 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  255 (281)
T 3cc6_A          176 LPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDP  255 (281)
T ss_dssp             CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             CCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCc
Confidence            7889999999999899999999999999999998 999998877666665554432  2334567899999999999999


Q ss_pred             CccCCCCCChhhhhcC
Q 042539          327 VKRLGYLRGACEIKEH  342 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h  342 (412)
                      .+||    ++.+++++
T Consensus       256 ~~Rp----s~~ell~~  267 (281)
T 3cc6_A          256 SDRP----RFTELVCS  267 (281)
T ss_dssp             GGSC----CHHHHHHH
T ss_pred             hhCc----CHHHHHHH
Confidence            9999    68888763

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3e-46  Score=354.84  Aligned_cols=260  Identities=19%  Similarity=0.244  Sum_probs=215.2

Q ss_pred             CCCCCccCceeee-eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALK-ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~-~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...+..++|.+++ .||+|+||.||+|.+....  .+..||+|+++...   .....+.+.+|+++++.++||||+++++
T Consensus         3 ~~~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~--~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~   77 (287)
T 1u59_A            3 KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRK--KQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIG   77 (287)
T ss_dssp             CCBCCGGGEEEEEEEEECCTTEEEEEEEEC-----CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccHHHhhhhhccccccCceeEEEeEeccCC--CcceEEEEecCCcc---chhHHHHHHHHHHHHHhCCCCCEeEEEE
Confidence            4567789999998 9999999999999875432  34569999997653   2344567788999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++ ..+.+|+||||+.|++|..++... ...+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||
T Consensus        78 ~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg  155 (287)
T 1u59_A           78 VC-QAEALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFG  155 (287)
T ss_dssp             EE-ESSSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCT
T ss_pred             Ee-cCCCcEEEEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECccc
Confidence            99 556799999999999998887543 3459999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.......                                                            .........|
T Consensus       156 ~~~~~~~~~~------------------------------------------------------------~~~~~~~~~~  175 (287)
T 1u59_A          156 LSKALGADDS------------------------------------------------------------YYTARSAGKW  175 (287)
T ss_dssp             TCEECTTCSC------------------------------------------------------------EECCCCSSCC
T ss_pred             ceeeeccCcc------------------------------------------------------------eeeccccccc
Confidence            9976521100                                                            0011123457


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.+..+....+....  ......++++.++|.+||..||.
T Consensus       176 ~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~  255 (287)
T 1u59_A          176 PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWE  255 (287)
T ss_dssp             CGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGG
T ss_pred             cccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChh
Confidence            899999999998889999999999999999998 999999988777777766543  22346789999999999999999


Q ss_pred             ccCCCCCChhhhhcC
Q 042539          328 KRLGYLRGACEIKEH  342 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h  342 (412)
                      +||    ++.++++|
T Consensus       256 ~Rp----s~~~l~~~  266 (287)
T 1u59_A          256 DRP----DFLTVEQR  266 (287)
T ss_dssp             GSC----CHHHHHHH
T ss_pred             hCc----CHHHHHHH
Confidence            999    68888875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=8.3e-47  Score=365.12  Aligned_cols=250  Identities=20%  Similarity=0.302  Sum_probs=198.4

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+..++|+++++||+|+||+||+|++.      ++.||||++.....     ......+|+.++++++|||||++++++
T Consensus        19 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~   87 (322)
T 3soc_A           19 LYFQSMPLQLLEVKARGRFGCVWKAQLL------NEYVAVKIFPIQDK-----QSWQNEYEVYSLPGMKHENILQFIGAE   87 (322)
T ss_dssp             EEETTEEEEEEEEEECSTTCEEEEEEET------TEEEEEEEECGGGH-----HHHHHHHHHHTSTTCCCTTBCCEEEEE
T ss_pred             cccchhhchhhheecccCceEEEEEEEC------CCEEEEEEeecCch-----HHHHHHHHHHHHhcCCCCCchhhccee
Confidence            3567789999999999999999999875      24599999965432     223345599999999999999999999


Q ss_pred             EeCC----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc----------CceeeeCCCCceEE
Q 042539           93 ETDE----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM----------GIAYRDLKPENILI  158 (412)
Q Consensus        93 ~~~~----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~----------~iiHrDlKp~NiLl  158 (412)
                      .+..    .+|+|||||.||+|..++...   .+++..+..++.|++.||.|||++          ||+||||||+|||+
T Consensus        88 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill  164 (322)
T 3soc_A           88 KRGTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLL  164 (322)
T ss_dssp             EEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEE
T ss_pred             ccCCCCCceEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEE
Confidence            8754    479999999999999888653   399999999999999999999999          99999999999999


Q ss_pred             ccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          159 RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      +.++.+||+|||+|+.+....                                                           
T Consensus       165 ~~~~~~kL~DFg~a~~~~~~~-----------------------------------------------------------  185 (322)
T 3soc_A          165 KNNLTACIADFGLALKFEAGK-----------------------------------------------------------  185 (322)
T ss_dssp             CTTCCEEECCCTTCEEECTTS-----------------------------------------------------------
T ss_pred             CCCCeEEEccCCccccccccc-----------------------------------------------------------
Confidence            999999999999997652110                                                           


Q ss_pred             cCCCCCCcccccCCCCccceeecCC-----CCCchhhHHHHHHHHHHHhhCCCCCCCCC----------------HHHHH
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPFRGKN----------------RKETF  297 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~~-----~~~~~~DiwSlGvil~ell~g~~Pf~~~~----------------~~~~~  297 (412)
                        ........+||+.|+|||++.+.     .++.++|||||||++|||++|+.||.+..                .....
T Consensus       186 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  263 (322)
T 3soc_A          186 --SAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQ  263 (322)
T ss_dssp             --CCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHH
T ss_pred             --CccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhh
Confidence              11122345799999999999873     45678999999999999999999997642                22222


Q ss_pred             HHHhcCC--CCCCC------CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          298 RNVLMKT--PEFVG------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       298 ~~i~~~~--~~~~~------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..+....  +....      .++++.+||.+||+.||++||    ++.++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp----s~~ell~  311 (322)
T 3soc_A          264 EVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARL----SAGCVGE  311 (322)
T ss_dssp             HHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             hhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCc----CHHHHHH
Confidence            2222221  11111      124599999999999999999    5888875

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=5.6e-47  Score=366.03  Aligned_cols=260  Identities=25%  Similarity=0.344  Sum_probs=212.2

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH--HHHHHHHHHHHHHhhcC--CCccc
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH--EAERRARWEIRVLSRLS--HPFLP   86 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~~~Ei~il~~l~--hpnIv   86 (412)
                      ...+...++|++++.||+|+||+||+|++..++    +.||||++.+.......  .....+.+|+.+++.+.  |+||+
T Consensus        36 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~  111 (320)
T 3a99_A           36 KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDN----LPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI  111 (320)
T ss_dssp             ----CCTTTEEEEEECSSSSSCEEEEEEETTTT----EEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBC
T ss_pred             cccCCccCceEEEEEEeeCCCeEEEEEEECCCC----cEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCce
Confidence            344666789999999999999999999987654    45999999766432100  11234456999999996  59999


Q ss_pred             eeeeeEEeCCeEEEEeeccCC-CCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc-cCCCE
Q 042539           87 KLLGSLETDEFLAWAVPYCPG-GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR-QSGHV  164 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~g-g~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~-~~g~v  164 (412)
                      ++++++.+.+.+++|||++.+ ++|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++ .++.+
T Consensus       112 ~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~  189 (320)
T 3a99_A          112 RLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGEL  189 (320)
T ss_dssp             CEEEEEECSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEE
T ss_pred             EEEEEEecCCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCE
Confidence            999999999999999999986 89988876654  499999999999999999999999999999999999999 77999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+|||+++....                                                                 ..
T Consensus       190 kL~Dfg~~~~~~~-----------------------------------------------------------------~~  204 (320)
T 3a99_A          190 KLIDFGSGALLKD-----------------------------------------------------------------TV  204 (320)
T ss_dssp             EECCCTTCEECCS-----------------------------------------------------------------SC
T ss_pred             EEeeCcccccccc-----------------------------------------------------------------cc
Confidence            9999999875421                                                                 11


Q ss_pred             CcccccCCCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CCCCCCChHHHHHHHHhh
Q 042539          245 SNSFVGTEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~dli~~~L  322 (412)
                      .....||+.|+|||++.+..+ +.++|||||||++|+|++|+.||...+      .+.... ......++++.+||.+||
T Consensus       205 ~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~li~~~l  278 (320)
T 3a99_A          205 YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFRQRVSSECQHLIRWCL  278 (320)
T ss_dssp             BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCCCCCSSCCCHHHHHHHHHHT
T ss_pred             ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------hhhcccccccccCCHHHHHHHHHHc
Confidence            224569999999999988776 789999999999999999999997632      122222 223457899999999999


Q ss_pred             hhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          323 EKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      ..||.+||    +++++++||||+++.+.
T Consensus       279 ~~dp~~Rp----s~~~ll~hp~~~~~~~~  303 (320)
T 3a99_A          279 ALRPSDRP----TFEEIQNHPWMQDVLLP  303 (320)
T ss_dssp             CSSGGGSC----CHHHHHTSGGGSSCCCH
T ss_pred             cCChhhCc----CHHHHhcCHhhcCccCc
Confidence            99999999    69999999999976543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=8.6e-47  Score=365.16  Aligned_cols=266  Identities=23%  Similarity=0.372  Sum_probs=193.3

Q ss_pred             CCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHH-HHhhcCCCccc
Q 042539            8 QPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR-VLSRLSHPFLP   86 (412)
Q Consensus         8 ~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~-il~~l~hpnIv   86 (412)
                      .+.....+..++|++++.||+|+||.||+|.++.++    +.||||+++....   ......+.+|+. +++.++||||+
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~~~~h~niv   84 (327)
T 3aln_A           12 SPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSG----QIMAVKRIRSTVD---EKEQKQLLMDLDVVMRSSDCPYIV   84 (327)
T ss_dssp             CCCEEECCCSCSEEC-CEEEECSSEEEEEEEETTTT----EEEEEEEEECCCC---HHHHHHHHHHHHHHHSSCCCTTBC
T ss_pred             ChHHhcccCHHHhhehheeccCCCEEEEEEEEcCCC----CEEEEEEeecccC---chHHHHHHHHHHHHHHcCCCCcEe
Confidence            345566888999999999999999999999987654    4599999976532   122334444555 77778999999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCCceEEccCC
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYK---QNDRVFSPSVIRFYLSEIICAIEHLHNM-GIAYRDLKPENILIRQSG  162 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~---~~~~~l~~~~~~~~~~qi~~aL~yLH~~-~iiHrDlKp~NiLl~~~g  162 (412)
                      ++++++.+++..|+||||+.| +|..++..   .....+++..+..++.|++.||.|||++ ||+||||||+|||++.+|
T Consensus        85 ~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~  163 (327)
T 3aln_A           85 QFYGALFREGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSG  163 (327)
T ss_dssp             CEEEEEECSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTT
T ss_pred             eeeeEEEeCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCC
Confidence            999999999999999999986 66555442   2245699999999999999999999999 999999999999999999


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+++.....                                                                
T Consensus       164 ~~kl~Dfg~~~~~~~~----------------------------------------------------------------  179 (327)
T 3aln_A          164 NIKLCDFGISGQLVDS----------------------------------------------------------------  179 (327)
T ss_dssp             EEEECCCSSSCC--------------------------------------------------------------------
T ss_pred             CEEEccCCCceecccc----------------------------------------------------------------
Confidence            9999999999754211                                                                


Q ss_pred             CCCcccccCCCCccceee----cCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH-HHHHHHhcCC-CCC-----CCCC
Q 042539          243 ERSNSFVGTEEYVSPEVV----RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK-ETFRNVLMKT-PEF-----VGQR  311 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l----~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-~~~~~i~~~~-~~~-----~~~~  311 (412)
                      .......||+.|+|||++    .+..++.++|||||||++|+|++|+.||.+.+.. +.+..+.... +.+     ...+
T Consensus       180 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (327)
T 3aln_A          180 IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFS  259 (327)
T ss_dssp             --------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCC
T ss_pred             cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCC
Confidence            111233689999999999    4566899999999999999999999999875432 2222222222 122     2467


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      +.+.+||.+||..||.+||    ++.++++||||....
T Consensus       260 ~~l~~li~~~l~~dp~~Rp----s~~ell~hp~~~~~~  293 (327)
T 3aln_A          260 PSFINFVNLCLTKDESKRP----KYKELLKHPFILMYE  293 (327)
T ss_dssp             HHHHHHHHHHTCSSGGGSC----CHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHhhCChhhCc----CHHHHHhChHHHHhH
Confidence            8999999999999999999    699999999997543

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2.3e-46  Score=368.11  Aligned_cols=265  Identities=17%  Similarity=0.200  Sum_probs=203.1

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCC-CCCceEEeeecchhhhhhHH-------HHHHHHHHHHHHhhcCCCccc
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPT-ARCPFALKVVDKSTLHAKHE-------AERRARWEIRVLSRLSHPFLP   86 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~-~~~~vAiK~i~~~~~~~~~~-------~~~~~~~Ei~il~~l~hpnIv   86 (412)
                      +..++|++++.||+|+||+||+|.++.++.. .++.||||++.........+       .......|+..+..++|+||+
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv  111 (364)
T 3op5_A           32 MAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVP  111 (364)
T ss_dssp             TTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSC
T ss_pred             cCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCC
Confidence            4456999999999999999999998765422 35669999987654211111       111234467778888999999


Q ss_pred             eeeeeEEeC----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc--c
Q 042539           87 KLLGSLETD----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR--Q  160 (412)
Q Consensus        87 ~l~~~~~~~----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~--~  160 (412)
                      ++++++...    ..+|+||||| |++|..++... ...+++.+++.++.||+.||+|||++||+||||||+|||++  .
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~  189 (364)
T 3op5_A          112 KYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKN  189 (364)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSC
T ss_pred             eEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCC
Confidence            999998765    4689999999 99999887654 34699999999999999999999999999999999999999  8


Q ss_pred             CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccC
Q 042539          161 SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD  240 (412)
Q Consensus       161 ~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
                      ++.+||+|||+|+.+......                                                        ...
T Consensus       190 ~~~~kl~DFG~a~~~~~~~~~--------------------------------------------------------~~~  213 (364)
T 3op5_A          190 PDQVYLVDYGLAYRYCPEGVH--------------------------------------------------------KAY  213 (364)
T ss_dssp             TTCEEECCCTTCEESSGGGCC--------------------------------------------------------CCS
T ss_pred             CCeEEEEECCcceecccCCcc--------------------------------------------------------ccc
Confidence            899999999999866322110                                                        001


Q ss_pred             CCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHH------------HhcCCCCCC
Q 042539          241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN------------VLMKTPEFV  308 (412)
Q Consensus       241 ~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~------------i~~~~~~~~  308 (412)
                      ........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.........            ++.......
T Consensus       214 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (364)
T 3op5_A          214 AADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAA  293 (364)
T ss_dssp             SCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTT
T ss_pred             ccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccc
Confidence            11223456799999999999999999999999999999999999999986322211111            111111124


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++++.+||..||..||.+||    ++.++++
T Consensus       294 ~~~~~~~~li~~cl~~~p~~RP----~~~~l~~  322 (364)
T 3op5_A          294 NAPGEIAKYMETVKLLDYTEKP----LYENLRD  322 (364)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCCC----CHHHHHH
T ss_pred             cCHHHHHHHHHHHhcCCCCCCC----CHHHHHH
Confidence            6789999999999999999999    4666654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.3e-46  Score=384.80  Aligned_cols=255  Identities=21%  Similarity=0.290  Sum_probs=216.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .+++..++|++.+.||+|+||.||+|.++.++    ..||||+++....     ....+.+|+.+|++++|||||+++++
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~----~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~l~~~  284 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYS----LTVAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLLGV  284 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGT----EEEEEEECCSSSS-----CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcCCC----eEEEEEEecCccc-----chHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            45778899999999999999999999998644    4499999976532     13456779999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+.+.+|+|||||.||+|..++.......+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus       285 ~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~  364 (495)
T 1opk_A          285 CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGL  364 (495)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTC
T ss_pred             EecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeeccc
Confidence            99999999999999999999998776556699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++......                                                              ........+|
T Consensus       365 a~~~~~~~--------------------------------------------------------------~~~~~~~~~~  382 (495)
T 1opk_A          365 SRLMTGDT--------------------------------------------------------------YTAHAGAKFP  382 (495)
T ss_dssp             EECCTTCC--------------------------------------------------------------EECCTTCCCC
T ss_pred             ceeccCCc--------------------------------------------------------------eeecCCCcCC
Confidence            97642110                                                              0011233467


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      ..|+|||++.+..++.++|||||||++|||++ |..||.+.+..+....+....  .....+++++.+||.+||+.||.+
T Consensus       383 ~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  462 (495)
T 1opk_A          383 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSD  462 (495)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhH
Confidence            88999999999889999999999999999998 999999988777766655432  223457899999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       463 RP----s~~el~~  471 (495)
T 1opk_A          463 RP----SFAEIHQ  471 (495)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5777764

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.6e-45  Score=353.45  Aligned_cols=256  Identities=29%  Similarity=0.436  Sum_probs=201.2

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ...+++|++++.||+|+||.||+|.+..++    ..||||++....... ......+.+|+.+++.++||||+++++++.
T Consensus        28 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~  102 (310)
T 2wqm_A           28 YNTLANFRIEKKIGRGQFSEVYRAACLLDG----VPVALKKVQIFDLMD-AKARADCIKEIDLLKQLNHPNVIKYYASFI  102 (310)
T ss_dssp             TSSGGGEEEEEEEECC--CEEEEEEETTTC----CEEEEEEECTTSSCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             cccccceEEEEeecCCCCceEEEEEEcCCC----ceEEEEeeehhhccC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEE
Confidence            446789999999999999999999987654    449999997644322 344567788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHh--hCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYK--QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~--~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +++.+++||||+.|++|..++..  .....+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus       103 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~  182 (310)
T 2wqm_A          103 EDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL  182 (310)
T ss_dssp             ETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC--
T ss_pred             cCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccc
Confidence            99999999999999999888754  2345689999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.....                                                               ........||
T Consensus       183 ~~~~~~~---------------------------------------------------------------~~~~~~~~~~  199 (310)
T 2wqm_A          183 GRFFSSK---------------------------------------------------------------TTAAHSLVGT  199 (310)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             eeeecCC---------------------------------------------------------------CccccccCCC
Confidence            8754211                                                               1112245789


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHhcCC-CC--CCCCChHHHHHHHHhhhhCC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK--NRKETFRNVLMKT-PE--FVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~--~~~~~~~~i~~~~-~~--~~~~~~~~~dli~~~L~~dP  326 (412)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.  +.......+.... +.  ....++++.+||.+||..||
T Consensus       200 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  279 (310)
T 2wqm_A          200 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDP  279 (310)
T ss_dssp             CSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSG
T ss_pred             eeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCCh
Confidence            9999999999999999999999999999999999999764  3334444444322 21  23567899999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||    ++.++++
T Consensus       280 ~~Rp----s~~~il~  290 (310)
T 2wqm_A          280 EKRP----DVTYVYD  290 (310)
T ss_dssp             GGSC----CHHHHHH
T ss_pred             hhCC----CHHHHHH
Confidence            9999    6888875

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=6.2e-46  Score=353.31  Aligned_cols=260  Identities=20%  Similarity=0.246  Sum_probs=211.0

Q ss_pred             CCCCCCccCceeee-eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           11 TTPSLDLDNLKALK-ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        11 ~~~~~~~~~y~~~~-~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ....+..++|++.+ .||+|+||+||+|.+....  ++..||||+++....  .....+.+.+|+++++.++||||++++
T Consensus         9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~--~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~   84 (291)
T 1xbb_A            9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKK--VVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMI   84 (291)
T ss_dssp             --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSS--SEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             ceeeecchhhhhccCccccccCeeeEeeeecCCC--ceeeEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            45677889999999 9999999999999654322  445699999976532  233456788899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++ ..+.+|+||||+.|++|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+||
T Consensus        85 ~~~-~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Df  161 (291)
T 1xbb_A           85 GIC-EAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDF  161 (291)
T ss_dssp             EEE-ESSSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCC
T ss_pred             EEE-CCCCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccC
Confidence            999 567889999999999999888764  34999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++........                                                            ........
T Consensus       162 g~~~~~~~~~~~------------------------------------------------------------~~~~~~~~  181 (291)
T 1xbb_A          162 GLSKALRADENY------------------------------------------------------------YKAQTHGK  181 (291)
T ss_dssp             TTCEECCTTCSE------------------------------------------------------------EEC----C
T ss_pred             CcceeeccCCCc------------------------------------------------------------ccccccCC
Confidence            999765211100                                                            00112234


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-C-CCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-P-EFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~-~~~~~~~~~~dli~~~L~~dP  326 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.+..+....+.... + .....++.+.++|.+||..||
T Consensus       182 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  261 (291)
T 1xbb_A          182 WPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDV  261 (291)
T ss_dssp             CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSST
T ss_pred             CCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCh
Confidence            6789999999998889999999999999999999 999999988888777666543 2 224568999999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||    ++.++++
T Consensus       262 ~~Rp----s~~~l~~  272 (291)
T 1xbb_A          262 ENRP----GFAAVEL  272 (291)
T ss_dssp             TTSC----CHHHHHH
T ss_pred             hhCc----CHHHHHH
Confidence            9999    5777774

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=1.9e-46  Score=360.16  Aligned_cols=262  Identities=23%  Similarity=0.344  Sum_probs=212.6

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLG   90 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~   90 (412)
                      .++..++|++++.||+|+||+||+|++.... ..+++.||||++++...   ......+.+|+.+++++ +||||+++++
T Consensus        22 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~   98 (316)
T 2xir_A           22 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLG   98 (316)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             eecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC---cHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence            3677789999999999999999999875432 23566799999976532   23455678899999999 6999999999


Q ss_pred             eEEeCC-eEEEEeeccCCCCchhHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCc
Q 042539           91 SLETDE-FLAWAVPYCPGGDLNVLRYKQND--------------RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPEN  155 (412)
Q Consensus        91 ~~~~~~-~~~lv~e~~~gg~L~~~~~~~~~--------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~N  155 (412)
                      ++...+ .+|+|||||.||+|..++.....              ..+++..+..++.||+.||.|||++||+||||||+|
T Consensus        99 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~N  178 (316)
T 2xir_A           99 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARN  178 (316)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccce
Confidence            987754 59999999999999988876432              128899999999999999999999999999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ||++.+|.+||+|||+++......                                                        
T Consensus       179 il~~~~~~~kl~Dfg~~~~~~~~~--------------------------------------------------------  202 (316)
T 2xir_A          179 ILLSEKNVVKICDFGLARDIYKDP--------------------------------------------------------  202 (316)
T ss_dssp             EEECGGGCEEECCCGGGSCTTTCT--------------------------------------------------------
T ss_pred             EEECCCCCEEECCCccccccccCc--------------------------------------------------------
Confidence            999999999999999997542110                                                        


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHH-HHHhcCC--CCCCCCC
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETF-RNVLMKT--PEFVGQR  311 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~-~~i~~~~--~~~~~~~  311 (412)
                           .........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+....+.+ ..+....  ......+
T Consensus       203 -----~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (316)
T 2xir_A          203 -----DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT  277 (316)
T ss_dssp             -----TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCC
T ss_pred             -----cceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCCCCC
Confidence                 0111234568899999999999999999999999999999998 99999886644333 3333222  2223467


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +++.++|.+||..||.+||    ++.++++|
T Consensus       278 ~~l~~li~~~l~~dp~~Rp----s~~ell~~  304 (316)
T 2xir_A          278 PEMYQTMLDCWHGEPSQRP----TFSELVEH  304 (316)
T ss_dssp             HHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCc----CHHHHHHH
Confidence            8999999999999999999    68988875

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=365.49  Aligned_cols=264  Identities=17%  Similarity=0.171  Sum_probs=200.4

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHH-------HHHHHHHHHHHHhhcCCCccc
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE-------AERRARWEIRVLSRLSHPFLP   86 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~-------~~~~~~~Ei~il~~l~hpnIv   86 (412)
                      .+..++|++++.||+|+||+||+|++...+. ++..||||++.+.......+       ....+.+|+.+++.++||||+
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~  111 (345)
T 2v62_A           33 DMEGNQWVLGKKIGSGGFGLIYLAFPTNKPE-KDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIP  111 (345)
T ss_dssp             CTTSCEEEEEEEC------CEEEEEESSSCG-GGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCC
T ss_pred             cccCceEEEEeeEeecCCeEEEEEEecCCCC-ccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcc
Confidence            4556799999999999999999999976322 34459999997653211111       112356789999999999999


Q ss_pred             eeeeeEEe----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC
Q 042539           87 KLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        87 ~l~~~~~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g  162 (412)
                      ++++++.+    +..+|+||||| |++|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.++
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~  188 (345)
T 2v62_A          112 LFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKN  188 (345)
T ss_dssp             CEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSS
T ss_pred             eeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCC
Confidence            99999987    67899999999 999988876544  599999999999999999999999999999999999999887


Q ss_pred             --CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccC
Q 042539          163 --HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFD  240 (412)
Q Consensus       163 --~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
                        .+||+|||+|+.+......                                                        ...
T Consensus       189 ~~~~kL~Dfg~a~~~~~~~~~--------------------------------------------------------~~~  212 (345)
T 2v62_A          189 PDQVYLADYGLSYRYCPNGNH--------------------------------------------------------KQY  212 (345)
T ss_dssp             TTSEEECCCTTCEESSGGGCC--------------------------------------------------------CCC
T ss_pred             CCcEEEEeCCCceeccccccc--------------------------------------------------------ccc
Confidence              9999999999876322110                                                        001


Q ss_pred             CCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCC--CCHHHHHH---HHhcCCCC-------CC
Q 042539          241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRG--KNRKETFR---NVLMKTPE-------FV  308 (412)
Q Consensus       241 ~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~--~~~~~~~~---~i~~~~~~-------~~  308 (412)
                      ........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+  .+......   ......+.       ..
T Consensus       213 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (345)
T 2v62_A          213 QENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSG  292 (345)
T ss_dssp             CCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTT
T ss_pred             hhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhcccc
Confidence            11222456899999999999999999999999999999999999999965  23222211   11111111       11


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..+.++.+||.+||..||.+||    +++++++
T Consensus       293 ~~~~~l~~li~~~l~~dp~~Rp----s~~~l~~  321 (345)
T 2v62_A          293 SSCCEIAQFLVCAHSLAYDEKP----NYQALKK  321 (345)
T ss_dssp             SCCHHHHHHHHHHHTCCTTCCC----CHHHHHH
T ss_pred             ccHHHHHHHHHHHhhcCcccCC----CHHHHHH
Confidence            6788999999999999999999    5777775

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=7.7e-46  Score=356.14  Aligned_cols=262  Identities=20%  Similarity=0.268  Sum_probs=207.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++.+.||+|+||+||+|.+...+. ++..||+|+++....  .......+.+|+.++++++||||++++++
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~  104 (313)
T 3brb_A           28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDG-TSLKVAVKTMKLDNS--SQREIEEFLSEAACMKDFSHPNVIRLLGV  104 (313)
T ss_dssp             TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTS-CEEEEEEEEC---CC--CHHHHHHHHHHHHHHHTCCCTTBCCCCEE
T ss_pred             hcccCHHHeeeccceeecCCeEEEEEEEeccCC-ceeEEEEEEEecccc--chhHHHHHHHHHHHHhcCCCCCeeeeeEE
Confidence            445677899999999999999999998765332 445699999976543  22345667889999999999999999999


Q ss_pred             EEeCC-----eEEEEeeccCCCCchhHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC
Q 042539           92 LETDE-----FLAWAVPYCPGGDLNVLRYKQ----NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        92 ~~~~~-----~~~lv~e~~~gg~L~~~~~~~----~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g  162 (412)
                      +.+.+     ..|+||||+.||+|..++...    ....+++..++.++.||+.||.|||++||+||||||+|||++.+|
T Consensus       105 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~  184 (313)
T 3brb_A          105 CIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDM  184 (313)
T ss_dssp             EEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTS
T ss_pred             EeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCC
Confidence            98654     459999999999998887432    334699999999999999999999999999999999999999999


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+++.+.....                                                             .
T Consensus       185 ~~kl~Dfg~~~~~~~~~~-------------------------------------------------------------~  203 (313)
T 3brb_A          185 TVCVADFGLSKKIYSGDY-------------------------------------------------------------Y  203 (313)
T ss_dssp             CEEECSCSCC----------------------------------------------------------------------
T ss_pred             cEEEeecCcceecccccc-------------------------------------------------------------c
Confidence            999999999976532110                                                             0


Q ss_pred             CCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQ  319 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~  319 (412)
                      .......+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ......++++.+||.
T Consensus       204 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  283 (313)
T 3brb_A          204 RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMY  283 (313)
T ss_dssp             -------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCBTTCCHHHHHHHH
T ss_pred             CcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCCCCCccccHHHHHHHH
Confidence            11123457889999999999999999999999999999999 999999988777777766543  233457789999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhc
Q 042539          320 RLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +||..||.+||    ++.++++
T Consensus       284 ~~l~~dp~~Rp----s~~~l~~  301 (313)
T 3brb_A          284 SCWRTDPLDRP----TFSVLRL  301 (313)
T ss_dssp             HTTCSSGGGSC----CHHHHHH
T ss_pred             HHcCCChhhCc----CHHHHHH
Confidence            99999999999    6888876

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=5.9e-46  Score=375.90  Aligned_cols=254  Identities=20%  Similarity=0.264  Sum_probs=210.9

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..+++..++|++.+.||+|+||+||+|.++.+     ..||||+++.....     ...+.+|+++|++++||||+++++
T Consensus       177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-----~~vavK~~~~~~~~-----~~~~~~E~~~l~~l~hp~iv~~~~  246 (452)
T 1fmk_A          177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-----TRVAIKTLKPGTMS-----PEAFLQEAQVMKKLRHEKLVQLYA  246 (452)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSCEEEEEEETTT-----EEEEEEECCTTSSC-----HHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccChhHceeeeeecCCCCeEEEEEEECCC-----ceEEEEEeccCCCC-----HHHHHHHHHHHHhCCCCCEeeEEE
Confidence            35678889999999999999999999998642     34999999765421     235677999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+ +.+|+|||||.||+|.+++.......+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus       247 ~~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG  325 (452)
T 1fmk_A          247 VVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFG  325 (452)
T ss_dssp             EECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             EEcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCc
Confidence            9876 678999999999999988875444458999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++......                                                              ........+
T Consensus       326 ~a~~~~~~~--------------------------------------------------------------~~~~~~~~~  343 (452)
T 1fmk_A          326 LARLIEDNE--------------------------------------------------------------YTARQGAKF  343 (452)
T ss_dssp             TTC----------------------------------------------------------------------------C
T ss_pred             cceecCCCc--------------------------------------------------------------eecccCCcc
Confidence            997652110                                                              001122356


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |..|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+....+..+.  +....+++.+.+||.+||..||+
T Consensus       344 ~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~  423 (452)
T 1fmk_A          344 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE  423 (452)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             cccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence            789999999999899999999999999999999 999999999888887776543  23346788999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    +++++++
T Consensus       424 ~Rp----t~~~l~~  433 (452)
T 1fmk_A          424 ERP----TFEYLQA  433 (452)
T ss_dssp             GSC----CHHHHHH
T ss_pred             hCc----CHHHHHH
Confidence            999    5777775

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=367.19  Aligned_cols=257  Identities=16%  Similarity=0.206  Sum_probs=200.3

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC---CCcc
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---HPFL   85 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~---hpnI   85 (412)
                      ....++.-++|++++.||+|+||+||+|.+... ...+++.||||+++...       ...+.+|+++++.+.   |+||
T Consensus        57 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~e~~~~~~l~~~~~~~i  129 (365)
T 3e7e_A           57 KTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN-------PWEFYIGTQLMERLKPSMQHMF  129 (365)
T ss_dssp             SCEEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC-------HHHHHHHHHHHHHSCGGGGGGB
T ss_pred             ceeEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC-------hhHHHHHHHHHHHhhhhhhhhh
Confidence            334456678899999999999999999964331 22345669999997643       223455777888887   8999


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc--
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQ---NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ--  160 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~---~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~--  160 (412)
                      +++++++..++..|+|||||.||+|..++...   ....+++.+++.++.||+.||+|||++|||||||||+|||++.  
T Consensus       130 v~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~  209 (365)
T 3e7e_A          130 MKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGF  209 (365)
T ss_dssp             CCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGG
T ss_pred             hhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccc
Confidence            99999999999999999999999999887653   2346999999999999999999999999999999999999998  


Q ss_pred             ---------CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCC
Q 042539          161 ---------SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSP  231 (412)
Q Consensus       161 ---------~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (412)
                               ++.+||+|||+|+.+...                                                     
T Consensus       210 ~~~~~~~~~~~~~kl~DFG~a~~~~~~-----------------------------------------------------  236 (365)
T 3e7e_A          210 LEQDDEDDLSAGLALIDLGQSIDMKLF-----------------------------------------------------  236 (365)
T ss_dssp             TCC------CTTEEECCCTTCEEGGGS-----------------------------------------------------
T ss_pred             cCccccccccCCEEEeeCchhhhhhcc-----------------------------------------------------
Confidence                     899999999999754211                                                     


Q ss_pred             ccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCC
Q 042539          232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQR  311 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~  311 (412)
                              .........+||+.|+|||++.+..++.++|||||||++|||++|+.||.........   ..........+
T Consensus       237 --------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~---~~~~~~~~~~~  305 (365)
T 3e7e_A          237 --------PKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK---PEGLFRRLPHL  305 (365)
T ss_dssp             --------CTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE---ECSCCTTCSSH
T ss_pred             --------CCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee---echhccccCcH
Confidence                    1112234568999999999999999999999999999999999999999654321100   00111111235


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhh
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIK  340 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l  340 (412)
                      +.+.+++.+||+.+|.+|++   ++.++.
T Consensus       306 ~~~~~~~~~~l~~~p~~r~~---~~~~l~  331 (365)
T 3e7e_A          306 DMWNEFFHVMLNIPDCHHLP---SLDLLR  331 (365)
T ss_dssp             HHHHHHHHHHHCCCCTTCCC---CHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCcch---HHHHHH
Confidence            67889999999999999985   444443

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=2.6e-46  Score=353.50  Aligned_cols=251  Identities=23%  Similarity=0.331  Sum_probs=207.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ......++|++++.||+|+||.||+|++..++    +.||+|++....        ..+.+|+++++.++||||++++++
T Consensus         5 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~--------~~~~~e~~~l~~l~h~~i~~~~~~   72 (284)
T 2a19_B            5 VDKRFGMDFKEIELIGSGGFGQVFKAKHRIDG----KTYVIKRVKYNN--------EKAEREVKALAKLDHVNIVHYNGC   72 (284)
T ss_dssp             CCHHHHHHEEEEEEEECSSSCCEEEEEETTTC----CEEEEEEEECCS--------GGGHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccchhccccceeeeeccCCceEEEEEEEcCCC----eEEEEEEecccc--------HHHHHHHHHHHhCCCCCEEEEeee
Confidence            33444578999999999999999999987654    449999996543        124469999999999999999999


Q ss_pred             EEe----------------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCc
Q 042539           92 LET----------------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPEN  155 (412)
Q Consensus        92 ~~~----------------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~N  155 (412)
                      +..                ...+|+|||||.|++|..++.......+++..+..++.||+.||.|||++||+||||||+|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~N  152 (284)
T 2a19_B           73 WDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSN  152 (284)
T ss_dssp             EEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGG
T ss_pred             EeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHH
Confidence            864                4568999999999999998876655569999999999999999999999999999999999


Q ss_pred             eEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccc
Q 042539          156 ILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRR  235 (412)
Q Consensus       156 iLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      ||++.++.+||+|||+++....                                                          
T Consensus       153 il~~~~~~~kl~Dfg~~~~~~~----------------------------------------------------------  174 (284)
T 2a19_B          153 IFLVDTKQVKIGDFGLVTSLKN----------------------------------------------------------  174 (284)
T ss_dssp             EEEEETTEEEECCCTTCEESSC----------------------------------------------------------
T ss_pred             EEEcCCCCEEECcchhheeccc----------------------------------------------------------
Confidence            9999999999999999875421                                                          


Q ss_pred             ccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHH
Q 042539          236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALT  315 (412)
Q Consensus       236 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  315 (412)
                            ........||+.|+|||++.+..++.++|||||||++|+|++|..||...  ......+... ......+..+.
T Consensus       175 ------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~  245 (284)
T 2a19_B          175 ------DGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET--SKFFTDLRDG-IISDIFDKKEK  245 (284)
T ss_dssp             ------CSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH--HHHHHHHHTT-CCCTTSCHHHH
T ss_pred             ------cccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH--HHHHHHhhcc-cccccCCHHHH
Confidence                  11122446999999999999999999999999999999999999988532  2233333322 22345678999


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhcCCCC
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      +||.+||..||.+||    ++.++++|.+.
T Consensus       246 ~li~~~l~~dp~~Rp----s~~e~l~~l~~  271 (284)
T 2a19_B          246 TLLQKLLSKKPEDRP----NTSEILRTLTV  271 (284)
T ss_dssp             HHHHHHTCSSGGGSC----CHHHHHHHHHH
T ss_pred             HHHHHHccCChhhCc----CHHHHHHHHHH
Confidence            999999999999999    69999987653

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=4.6e-46  Score=360.27  Aligned_cols=262  Identities=21%  Similarity=0.267  Sum_probs=213.0

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...-++.++|++++.||+|+||.||+|++...+..+++.||||++....    ....+.+.+|++++++++|+||+++++
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~   91 (327)
T 3lxl_A           16 DPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG----PDQQRDFQREIQILKALHSDFIVKYRG   91 (327)
T ss_dssp             -CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC----HHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             hhhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC----HHHHHHHHHHHHHHHhcCCCceeEEEE
Confidence            3456788999999999999999999999766666677789999997653    234566788999999999999999999


Q ss_pred             eEE--eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           91 SLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        91 ~~~--~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      ++.  +...+|+|||||.|++|..++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.+|.+||+|
T Consensus        92 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~D  170 (327)
T 3lxl_A           92 VSYGPGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIAD  170 (327)
T ss_dssp             EEECSSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECC
T ss_pred             EEecCCCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcc
Confidence            886  4567999999999999998877643 3489999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++.......                                                            ........
T Consensus       171 fg~~~~~~~~~~------------------------------------------------------------~~~~~~~~  190 (327)
T 3lxl_A          171 FGLAKLLPLDKD------------------------------------------------------------YYVVREPG  190 (327)
T ss_dssp             GGGCEECCTTCS------------------------------------------------------------EEECSSCC
T ss_pred             cccceecccCCc------------------------------------------------------------cceeeccC
Confidence            999976521100                                                            00112234


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH---------------HHHHHHhcC--CCCCCCCC
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK---------------ETFRNVLMK--TPEFVGQR  311 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~---------------~~~~~i~~~--~~~~~~~~  311 (412)
                      .||+.|+|||++.+..++.++|||||||++|+|++|..||......               .....+...  .+.....+
T Consensus       191 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (327)
T 3lxl_A          191 QSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACP  270 (327)
T ss_dssp             CSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCC
T ss_pred             CccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCccc
Confidence            6888999999999998999999999999999999999999764322               112222221  12334568


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +.+.+||.+||..||.+||    ++.++++
T Consensus       271 ~~l~~li~~~l~~dP~~Rp----s~~ell~  296 (327)
T 3lxl_A          271 AEVHELMKLCWAPSPQDRP----SFSALGP  296 (327)
T ss_dssp             HHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCc----CHHHHHH
Confidence            9999999999999999999    6888865

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=6.5e-46  Score=356.81  Aligned_cols=259  Identities=27%  Similarity=0.422  Sum_probs=207.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC--CCccceeeee
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS--HPFLPKLLGS   91 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~--hpnIv~l~~~   91 (412)
                      .+.-++|++++.||+|+||.||+|.+..     ++.||||++.....  .......+.+|+.++++++  |+||++++++
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~   96 (313)
T 3cek_A           24 SVKGRIYSILKQIGSGGSSKVFQVLNEK-----KQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY   96 (313)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEECTT-----CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEE
T ss_pred             eeccceEEEEEEecCCCCEEEEEEEcCC-----CcEEEEEEeccccc--cccchHHHHHHHHHHHhccccCCceEEEEEE
Confidence            4455689999999999999999998753     34599999976543  2334567788999999997  5999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+++.+|+||| +.+++|..++....  .+++.+++.++.||+.||.|||++||+||||||+|||++ +|.+||+|||+
T Consensus        97 ~~~~~~~~lv~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~  172 (313)
T 3cek_A           97 EITDQYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGI  172 (313)
T ss_dssp             EECSSEEEEEEC-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSS
T ss_pred             eecCCEEEEEEe-cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccc
Confidence            999999999999 56889988877543  589999999999999999999999999999999999996 58999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.......                                                             .......+||
T Consensus       173 ~~~~~~~~~-------------------------------------------------------------~~~~~~~~gt  191 (313)
T 3cek_A          173 ANQMQPDTT-------------------------------------------------------------SVVKDSQVGT  191 (313)
T ss_dssp             SCC---------------------------------------------------------------------------CC
T ss_pred             cccccCccc-------------------------------------------------------------cccccCCCCC
Confidence            976532110                                                             0112345799


Q ss_pred             CCCccceeecC-----------CCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcCCC--CC-CCCChHHHH
Q 042539          252 EEYVSPEVVRG-----------DGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKTP--EF-VGQRTALTD  316 (412)
Q Consensus       252 ~~Y~APE~l~~-----------~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~~~--~~-~~~~~~~~d  316 (412)
                      +.|+|||++.+           ..++.++|||||||++|+|++|..||.... ....+..+.....  .+ ...+.++.+
T Consensus       192 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (313)
T 3cek_A          192 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD  271 (313)
T ss_dssp             GGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHH
T ss_pred             CCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcccchHHHHH
Confidence            99999999876           467889999999999999999999998753 3344455544322  22 234688999


Q ss_pred             HHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       317 li~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      ||.+||..||.+||    ++.++++||||+..
T Consensus       272 li~~~l~~dp~~Rp----s~~ell~h~~~~~~  299 (313)
T 3cek_A          272 VLKCCLKRDPKQRI----SIPELLAHPYVQIQ  299 (313)
T ss_dssp             HHHHHTCSSTTTSC----CHHHHHTSHHHHCC
T ss_pred             HHHHHccCCcccCc----CHHHHhcCccccCC
Confidence            99999999999999    69999999999753

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=8.5e-46  Score=349.83  Aligned_cols=254  Identities=18%  Similarity=0.247  Sum_probs=212.0

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..+++..++|++++.||+|+||.||+|++..     +..||+|++......     ...+.+|+++++.++||||+++++
T Consensus         6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~-----~~~~~~E~~~l~~l~h~~i~~~~~   75 (279)
T 1qpc_A            6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNG-----HTKVAVKSLKQGSMS-----PDAFLAEANLMKQLQHQRLVRLYA   75 (279)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTSSC-----HHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             hhcccCHHhhhheeeecCCCCeEEEEEEEcC-----CcEEEEEEecCCccc-----HHHHHHHHHHHHhCCCcCcceEEE
Confidence            3567788999999999999999999998753     334999999765421     345677999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++. ++..|+||||+.|++|.+++.......+++.++..++.|++.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        76 ~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg  154 (279)
T 1qpc_A           76 VVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFG  154 (279)
T ss_dssp             EEC-SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             EEc-CCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCc
Confidence            986 4568999999999999888765433359999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++......                                                              ........|
T Consensus       155 ~~~~~~~~~--------------------------------------------------------------~~~~~~~~~  172 (279)
T 1qpc_A          155 LARLIEDNE--------------------------------------------------------------YTAREGAKF  172 (279)
T ss_dssp             TCEECSSSC--------------------------------------------------------------EECCTTCCC
T ss_pred             ccccccCcc--------------------------------------------------------------cccccCCCC
Confidence            997542110                                                              001123357


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.+..+....+....  ......++++.+||.+||..||+
T Consensus       173 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  252 (279)
T 1qpc_A          173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPE  252 (279)
T ss_dssp             CTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHHHHHHhccChh
Confidence            889999999998889999999999999999999 999999998888877776543  22345678999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    +++++++
T Consensus       253 ~Rp----s~~~l~~  262 (279)
T 1qpc_A          253 DRP----TFDYLRS  262 (279)
T ss_dssp             GSC----CHHHHHH
T ss_pred             hCC----CHHHHHH
Confidence            999    5777775

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1e-45  Score=356.77  Aligned_cols=257  Identities=19%  Similarity=0.251  Sum_probs=207.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +.-+.|++++.||+|+||+||++..+..+..+++.||||++++..   .......+.+|+++++.++||||+++++++.+
T Consensus        28 ~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  104 (318)
T 3lxp_A           28 FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---GPQHRSGWKQEIDILRTLYHEHIIKYKGCCED  104 (318)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE
T ss_pred             ecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---ChHHHHHHHHHHHHHHhCCCcchhhEEEEEec
Confidence            444445999999999999999998877777788889999997653   23445678889999999999999999999987


Q ss_pred             C--CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           95 D--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        95 ~--~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .  ..+|+|||||.||+|..++...   .+++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       105 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a  181 (318)
T 3lxp_A          105 AGAASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA  181 (318)
T ss_dssp             TTTTEEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGC
T ss_pred             CCCceEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCcccc
Confidence            4  6899999999999998887543   3999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.......                                                            .........||+
T Consensus       182 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~  201 (318)
T 3lxp_A          182 KAVPEGHE------------------------------------------------------------YYRVREDGDSPV  201 (318)
T ss_dssp             EECCTTCS------------------------------------------------------------EEEC---CCCCG
T ss_pred             cccccccc------------------------------------------------------------ccccccCCCCCc
Confidence            76532100                                                            001122446888


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH--------------HHHHHhcC---CCCCCCCChHHH
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE--------------TFRNVLMK---TPEFVGQRTALT  315 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~--------------~~~~i~~~---~~~~~~~~~~~~  315 (412)
                      .|+|||++.+..++.++|||||||++|+|++|..||.......              .....+..   .+.....+.++.
T Consensus       202 ~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  281 (318)
T 3lxp_A          202 FWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVY  281 (318)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHH
T ss_pred             eeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHH
Confidence            9999999999889999999999999999999999997643211              11112211   123345688999


Q ss_pred             HHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          316 DLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       316 dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +||.+||..||.+||    ++.++++
T Consensus       282 ~li~~~l~~dP~~Rp----s~~ell~  303 (318)
T 3lxp_A          282 HLMKNCWETEASFRP----TFENLIP  303 (318)
T ss_dssp             HHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             HHHHHHcCCCcccCc----CHHHHHH
Confidence            999999999999999    6888874

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.1e-45  Score=352.46  Aligned_cols=259  Identities=17%  Similarity=0.203  Sum_probs=208.1

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE-E
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL-E   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~-~   93 (412)
                      ....+|++.+.||+|+||+||+|++...+. ....||+|++....   .......+.+|+.++++++||||+++++++ .
T Consensus        22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~~avk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   97 (298)
T 3f66_A           22 PSSLIVHFNEVIGRGHFGCVYHGTLLDNDG-KKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR   97 (298)
T ss_dssp             GGGEEEEEEEEEEEETTEEEEEEEEC------CEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC
T ss_pred             ccceehhhcceeeecCCceEEEEEEecCCC-ceeEEEEEecccCC---CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc
Confidence            345689999999999999999998765432 34458999986532   233456678899999999999999999985 5


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      .++..|+|||||.||+|..++... ...+++..+..++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++
T Consensus        98 ~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~  176 (298)
T 3f66_A           98 SEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLAR  176 (298)
T ss_dssp             SSSCCEEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGC
T ss_pred             CCCceEEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccc
Confidence            567889999999999999887653 3458999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .......                                                           ..........||+.
T Consensus       177 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~~  197 (298)
T 3f66_A          177 DMYDKEY-----------------------------------------------------------YSVHNKTGAKLPVK  197 (298)
T ss_dssp             CCSCGGG-----------------------------------------------------------CBC-----CCBCGG
T ss_pred             cccccch-----------------------------------------------------------hccccccCCCCCcc
Confidence            6532111                                                           01112234468899


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC--CCCCChHHHHHHHHhhhhCCCccC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE--FVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |+|||++.+..++.++|||||||++|+|++ |.+||.+.+..+....+......  ....++.+.++|.+||..||.+||
T Consensus       198 y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  277 (298)
T 3f66_A          198 WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRP  277 (298)
T ss_dssp             GSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCc
Confidence            999999999999999999999999999999 78888887766666666554322  334678999999999999999999


Q ss_pred             CCCCChhhhhc
Q 042539          331 GYLRGACEIKE  341 (412)
Q Consensus       331 ~~~~~~~e~l~  341 (412)
                          ++.++++
T Consensus       278 ----s~~ell~  284 (298)
T 3f66_A          278 ----SFSELVS  284 (298)
T ss_dssp             ----CHHHHHH
T ss_pred             ----CHHHHHH
Confidence                6888775

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=373.67  Aligned_cols=253  Identities=27%  Similarity=0.412  Sum_probs=204.3

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+.-++|++.+.||+|+||+||+|+++.++.    .||||++.+.....   ....+.+|+++++.++||||+++++++.
T Consensus         5 ~~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~----~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~hpnIv~~~~~~~   77 (396)
T 4eut_A            5 STSNHLWLLSDILGQGATANVFRGRHKKTGD----LFAIKVFNNISFLR---PVDVQMREFEVLKKLNHKNIVKLFAIEE   77 (396)
T ss_dssp             ECSSEEEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEECGGGGGS---CHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             CCCCCceEEEEEEEcCCCeEEEEEEECCCCc----EEEEEEeccccccc---hHHHHHHHHHHHHhcCCCCCCeEEEeec
Confidence            3456799999999999999999999987554    49999997654322   2345567999999999999999999998


Q ss_pred             eCC--eEEEEeeccCCCCchhHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE----ccCCCEEE
Q 042539           94 TDE--FLAWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI----RQSGHVTL  166 (412)
Q Consensus        94 ~~~--~~~lv~e~~~gg~L~~~~~~~~~-~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl----~~~g~vkL  166 (412)
                      ..+  ..|+|||||.||+|..++..... ..+++.+++.++.||+.||+|||++||+||||||+|||+    +.++.+||
T Consensus        78 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL  157 (396)
T 4eut_A           78 ETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKL  157 (396)
T ss_dssp             CTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEE
T ss_pred             cCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEE
Confidence            765  78999999999999888765432 239999999999999999999999999999999999999    77788999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+++.....                                                                ....
T Consensus       158 ~DFG~a~~~~~~----------------------------------------------------------------~~~~  173 (396)
T 4eut_A          158 TDFGAARELEDD----------------------------------------------------------------EQFV  173 (396)
T ss_dssp             CCGGGCEECCCG----------------------------------------------------------------GGSS
T ss_pred             ecCCCceEccCC----------------------------------------------------------------Cccc
Confidence            999999765211                                                                1123


Q ss_pred             ccccCCCCccceeecC--------CCCCchhhHHHHHHHHHHHhhCCCCCCC----CCHHHHHHHHhcCCCCC-------
Q 042539          247 SFVGTEEYVSPEVVRG--------DGHEFAVDWWALGILTYEMLYGTTPFRG----KNRKETFRNVLMKTPEF-------  307 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~--------~~~~~~~DiwSlGvil~ell~g~~Pf~~----~~~~~~~~~i~~~~~~~-------  307 (412)
                      +.+||+.|+|||++.+        ..++.++|||||||++|||++|+.||..    ....+.+.+++.+.+..       
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  253 (396)
T 4eut_A          174 SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQK  253 (396)
T ss_dssp             CSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEEC
T ss_pred             cccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhhee
Confidence            4579999999999875        4568899999999999999999999964    23345555665544321       


Q ss_pred             ---------------CC----CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          308 ---------------VG----QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       308 ---------------~~----~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                                     ..    .+..+.+||.+||..||++|+    +++++++
T Consensus       254 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~----s~~e~l~  302 (396)
T 4eut_A          254 AENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCW----GFDQFFA  302 (396)
T ss_dssp             STTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSC----CHHHHHH
T ss_pred             ccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhc----cHHHHHH
Confidence                           01    225788999999999999999    5777754

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.2e-46  Score=354.42  Aligned_cols=264  Identities=20%  Similarity=0.262  Sum_probs=208.1

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      .....+..++|++++.||+|+||+||+|++..... ....||+|+++...... ....+.+.+|+++++.++||||++++
T Consensus        10 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~   87 (291)
T 1u46_A           10 SLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSG-KTVSVAVKCLKPDVLSQ-PEAMDDFIREVNAMHSLDHRNLIRLY   87 (291)
T ss_dssp             -CCEECCGGGEEEEEECC----CCCEEEEEECTTS-CEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccccccchhHeeeeeeecCCCceeEEEEEeccCCC-ceeEEEEEEEccCccCC-HHHHHHHHHHHHHHHhCCCCCcccEE
Confidence            34557778999999999999999999998754322 22358999997654322 34566788899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.++. .++||||+.+++|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+||
T Consensus        88 ~~~~~~~-~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Df  165 (291)
T 1u46_A           88 GVVLTPP-MKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDF  165 (291)
T ss_dssp             EEECSSS-CEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCC
T ss_pred             EEEccCC-ceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccc
Confidence            9998765 899999999999988876643 35899999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.......                                                            .........
T Consensus       166 g~~~~~~~~~~------------------------------------------------------------~~~~~~~~~  185 (291)
T 1u46_A          166 GLMRALPQNDD------------------------------------------------------------HYVMQEHRK  185 (291)
T ss_dssp             TTCEECCC-CC------------------------------------------------------------EEEC-----
T ss_pred             ccccccccccc------------------------------------------------------------chhhhccCC
Confidence            99976521100                                                            001122346


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC---CCCCCChHHHHHHHHhhhhC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP---EFVGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~dli~~~L~~d  325 (412)
                      ||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.+..+....+.....   .....+.++.++|.+||..|
T Consensus       186 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  265 (291)
T 1u46_A          186 VPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHK  265 (291)
T ss_dssp             CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             CCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCC
Confidence            7889999999999889999999999999999999 9999999998888887765432   23456789999999999999


Q ss_pred             CCccCCCCCChhhhhc
Q 042539          326 PVKRLGYLRGACEIKE  341 (412)
Q Consensus       326 P~~R~~~~~~~~e~l~  341 (412)
                      |.+||    ++.++++
T Consensus       266 p~~Rp----s~~~l~~  277 (291)
T 1u46_A          266 PEDRP----TFVALRD  277 (291)
T ss_dssp             GGGSC----CHHHHHH
T ss_pred             cccCc----CHHHHHH
Confidence            99999    6888886

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=5.1e-46  Score=351.40  Aligned_cols=249  Identities=22%  Similarity=0.328  Sum_probs=204.5

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ....+..++|++++.||+|+||+||++++.      +..||+|+++...      ..+.+.+|+++++.++||||+++++
T Consensus        14 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~~iv~~~~   81 (278)
T 1byg_A           14 SGWALNMKELKLLQTIGKGEFGDVMLGDYR------GNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLG   81 (278)
T ss_dssp             -CCBCCGGGEEEEEEEEECSSCEEEEEEET------TEEEEEEECCCCC--------HHHHHTHHHHTTCCCTTBCCEEE
T ss_pred             ccccCChhhceEEeEEecCCCceEEEEEEc------CCEEEEEEecchh------HHHHHHHHHHHHHhCCCCCEeeEEE
Confidence            345788999999999999999999999874      2359999996542      2345777999999999999999999


Q ss_pred             eEEeC-CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           91 SLETD-EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        91 ~~~~~-~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      ++.+. +.+|+||||+.|++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.+|.+||+||
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Df  161 (278)
T 1byg_A           82 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDF  161 (278)
T ss_dssp             EECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCC
T ss_pred             EEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeec
Confidence            87544 57999999999999998887654334889999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++.....                                                                  .....
T Consensus       162 g~~~~~~~~------------------------------------------------------------------~~~~~  175 (278)
T 1byg_A          162 GLTKEASST------------------------------------------------------------------QDTGK  175 (278)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccccccccc------------------------------------------------------------------ccCCC
Confidence            998643210                                                                  11235


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      +|+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+....  ......++.+.++|.+||..||
T Consensus       176 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  255 (278)
T 1byg_A          176 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDA  255 (278)
T ss_dssp             CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             ccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCCh
Confidence            7889999999999999999999999999999998 999999988777776665442  2234568899999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+||    ++.++++
T Consensus       256 ~~Rp----s~~~l~~  266 (278)
T 1byg_A          256 AMRP----SFLQLRE  266 (278)
T ss_dssp             GGSC----CHHHHHH
T ss_pred             hhCC----CHHHHHH
Confidence            9999    5777764

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.5e-45  Score=348.45  Aligned_cols=256  Identities=20%  Similarity=0.252  Sum_probs=208.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      -.|++.+.||+|+||+||+|++...+. .+..||+|++.+..   .....+.+.+|+.+++.++||||+++++++.+.+.
T Consensus        21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   96 (298)
T 3pls_A           21 VVTHSDRVIGKGHFGVVYHGEYIDQAQ-NRIQCAIKSLSRIT---EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG   96 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEECSSS-CEEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS
T ss_pred             eEEccCceeccCCCceEEEEEEecCCC-ceeeeeeeeccccc---cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC
Confidence            356677999999999999998765433 33459999986533   23345677789999999999999999999987765


Q ss_pred             E-EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           98 L-AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        98 ~-~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      . ++||||+.||+|..++... ...+++.++..++.|++.||+|||++||+||||||+|||++.+|.+||+|||+++.+.
T Consensus        97 ~~~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~  175 (298)
T 3pls_A           97 LPHVLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDIL  175 (298)
T ss_dssp             CCEEEECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred             CcEEEEecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence            5 9999999999998887653 3468999999999999999999999999999999999999999999999999997653


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ....                                                           ..........||+.|+|
T Consensus       176 ~~~~-----------------------------------------------------------~~~~~~~~~~~~~~y~a  196 (298)
T 3pls_A          176 DREY-----------------------------------------------------------YSVQQHRHARLPVKWTA  196 (298)
T ss_dssp             TGGG-----------------------------------------------------------GCSCCSSCTTCGGGGSC
T ss_pred             CCcc-----------------------------------------------------------cccccCcCCCCCccccC
Confidence            2211                                                           01122234568899999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ||++.+..++.++|||||||++|+|++ |.+||.+.+..+....+....  +.....++.+.+||.+||..||.+||   
T Consensus       197 PE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp---  273 (298)
T 3pls_A          197 LESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRP---  273 (298)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCc---
Confidence            999999999999999999999999999 666677777666666555433  23345678999999999999999999   


Q ss_pred             CChhhhhc
Q 042539          334 RGACEIKE  341 (412)
Q Consensus       334 ~~~~e~l~  341 (412)
                       ++.++++
T Consensus       274 -s~~~ll~  280 (298)
T 3pls_A          274 -TFRVLVG  280 (298)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             5788775

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=361.27  Aligned_cols=257  Identities=16%  Similarity=0.211  Sum_probs=202.8

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCC----CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccce---
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPT----ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPK---   87 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~----~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~---   87 (412)
                      ..-++|++++.||+|+||+||+|++..+...    .++.||||++.+.         ..+.+|++++++++||||++   
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---------~~~~~E~~~l~~l~h~niv~~~~  109 (352)
T 2jii_A           39 KSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---------GRLFNEQNFFQRAAKPLQVNKWK  109 (352)
T ss_dssp             TTSCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---------STHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccCCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---------chHHHHHHHHHHhcccchhhhhh
Confidence            3458999999999999999999998864210    2445999999654         23556999999999999988   


Q ss_pred             ------------eeeeEEe-CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCC
Q 042539           88 ------------LLGSLET-DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPE  154 (412)
Q Consensus        88 ------------l~~~~~~-~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~  154 (412)
                                  +++++.. +..+|+||||| |++|..++.......+++.++..++.||+.||.|||++||+||||||+
T Consensus       110 ~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~  188 (352)
T 2jii_A          110 KLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAE  188 (352)
T ss_dssp             HHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGG
T ss_pred             hhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHH
Confidence                        5667765 67899999999 999999988654456999999999999999999999999999999999


Q ss_pred             ceEEccCC--CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          155 NILIRQSG--HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       155 NiLl~~~g--~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                      |||++.++  .+||+|||+++.+.......                                                  
T Consensus       189 NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~--------------------------------------------------  218 (352)
T 2jii_A          189 NIFVDPEDQSQVTLAGYGFAFRYCPSGKHV--------------------------------------------------  218 (352)
T ss_dssp             GEEEETTEEEEEEECCGGGCBCSSGGGCCC--------------------------------------------------
T ss_pred             HEEEcCCCCceEEEecCcceeeccCCCccc--------------------------------------------------
Confidence            99999998  89999999998653221100                                                  


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHH---hcCCCCC
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN--RKETFRNV---LMKTPEF  307 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--~~~~~~~i---~~~~~~~  307 (412)
                            ...........||+.|+|||++.+..++.++|||||||++|+|++|+.||.+..  ........   ......+
T Consensus       219 ------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  292 (352)
T 2jii_A          219 ------AYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPF  292 (352)
T ss_dssp             ------CCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCE
T ss_pred             ------cccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhh
Confidence                  001122335589999999999999999999999999999999999999998753  33332222   2222222


Q ss_pred             -------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          308 -------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       308 -------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                             ...+.++.+||.+||..||.+||    +++++++
T Consensus       293 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----s~~~l~~  329 (352)
T 2jii_A          293 VGPCGHWIRPSETLQKYLKVVMALTYEEKP----PYAMLRN  329 (352)
T ss_dssp             ECTTSCEECCCHHHHHHHHHHHTCCTTCCC----CHHHHHH
T ss_pred             hhhccccCCCcHHHHHHHHHHHhCChhhCC----CHHHHHH
Confidence                   24579999999999999999999    5777765

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=3.5e-45  Score=372.48  Aligned_cols=268  Identities=18%  Similarity=0.271  Sum_probs=213.0

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC-CccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-PFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h-pnIv~l~~~~~~   94 (412)
                      ..++|+++++||+|+||.||+|++..++.    .||||++......      ..+.+|+++++.+.| ++|+.+..++..
T Consensus         5 i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~----~vAvK~~~~~~~~------~~~~~E~~il~~L~~~~~i~~i~~~~~~   74 (483)
T 3sv0_A            5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNE----EVAIKLENVKTKH------PQLLYESKIYRILQGGTGIPNVRWFGVE   74 (483)
T ss_dssp             ETTTEECCCCCEECSSCEEEEEEETTTCC----EEEEEEEETTCSS------CCHHHHHHHHHHTTTSTTCCCEEEEEEE
T ss_pred             cCCcEEEEEEEeeCCCEEEEEEEECCCCc----EEEEEEecccccc------HHHHHHHHHHHHhcCCCCCCeEEEEEee
Confidence            45799999999999999999999877544    4999998654432      235569999999986 667777777788


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE---ccCCCEEEccccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDL  171 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl---~~~g~vkL~DFGl  171 (412)
                      .+..||||||| |++|.+++.... ..+++.+++.++.||+.||+|||++|||||||||+||||   +.++.+||+|||+
T Consensus        75 ~~~~~lvme~~-g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGl  152 (483)
T 3sv0_A           75 GDYNVLVMDLL-GPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGL  152 (483)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred             CCEEEEEEECC-CCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCc
Confidence            88999999999 999998876433 459999999999999999999999999999999999999   6889999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.+.......                                                        ..........+||
T Consensus       153 a~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~gt  176 (483)
T 3sv0_A          153 AKKYRDTSTHQ--------------------------------------------------------HIPYRENKNLTGT  176 (483)
T ss_dssp             CEECBCTTTCC--------------------------------------------------------BCCCCCCCCCCSC
T ss_pred             ceeccCCcccc--------------------------------------------------------ccccccccccCCC
Confidence            98653211000                                                        0001223367899


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC---HHHHHHHHhcCC------CCCCCCChHHHHHHHHhh
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN---RKETFRNVLMKT------PEFVGQRTALTDLIQRLL  322 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---~~~~~~~i~~~~------~~~~~~~~~~~dli~~~L  322 (412)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+..   ..+.+..+....      .....+++++.+||.+||
T Consensus       177 ~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl  256 (483)
T 3sv0_A          177 ARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCR  256 (483)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998743   333333332211      011466889999999999


Q ss_pred             hhCCCccCCCCCChhhh----------hcCCCCCCCCchhhcc
Q 042539          323 EKDPVKRLGYLRGACEI----------KEHVFFKGVRWDLLTD  355 (412)
Q Consensus       323 ~~dP~~R~~~~~~~~e~----------l~h~ff~~~~~~~~~~  355 (412)
                      ..||.+||+    ++++          ..++|+..++|+.+..
T Consensus       257 ~~dP~~RPs----~~el~~~L~~l~~~~~~~~~~~~dW~~~~~  295 (483)
T 3sv0_A          257 SLRFDDKPD----YSYLKRLFRDLFIREGFQFDYVFDWTILKY  295 (483)
T ss_dssp             TCCTTCCCC----HHHHHHHHHHHHHHTTCCCSSCCHHHHHTC
T ss_pred             cCChhhCcC----HHHHHHHHHHHHHHcCCCccCCcCchhhcc
Confidence            999999995    4433          3579999999987754

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.3e-46  Score=361.44  Aligned_cols=255  Identities=20%  Similarity=0.216  Sum_probs=203.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .-..++|++.+.||+|+||+||+|+++     +++.||||++.....    .....+.+|+.+++.++||||+++++++.
T Consensus        35 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  105 (321)
T 2qkw_B           35 EEATNNFDHKFLIGHGVFGKVYKGVLR-----DGAKVALKRRTPESS----QGIEEFETEIETLSFCRHPHLVSLIGFCD  105 (321)
T ss_dssp             CCCCCCCSCCCCSCBCSSSEEEEEECT-----TCCEEEEEECCSCCS----SHHHHHHHHHHGGGSCCCTTBCCEEEECC
T ss_pred             HHHHhccCccceeecCCCeeEEEEEEC-----CCCEEEEEEecccCh----HHHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence            345589999999999999999999864     234599999865432    23456778999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQND--RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~--~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +++.+|+|||||.||+|..++.....  ..+++.++..++.|++.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus       106 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  185 (321)
T 2qkw_B          106 ERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGI  185 (321)
T ss_dssp             CTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTT
T ss_pred             CCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccc
Confidence            99999999999999999888754432  2489999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.....                                                             ..........||
T Consensus       186 ~~~~~~~-------------------------------------------------------------~~~~~~~~~~gt  204 (321)
T 2qkw_B          186 SKKGTEL-------------------------------------------------------------DQTHLSTVVKGT  204 (321)
T ss_dssp             CEECSSS-------------------------------------------------------------SCCCCBCCCEEE
T ss_pred             ccccccc-------------------------------------------------------------cccccccccCCC
Confidence            8753210                                                             011122345799


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHH-------HHHHhcCC------CCC-----CCCChH
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET-------FRNVLMKT------PEF-----VGQRTA  313 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~-------~~~i~~~~------~~~-----~~~~~~  313 (412)
                      +.|+|||++.+..++.++|||||||++|+|++|+.||.+....+.       ........      +..     +..+..
T Consensus       205 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (321)
T 2qkw_B          205 LGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRK  284 (321)
T ss_dssp             TTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHH
T ss_pred             ccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHH
Confidence            999999999988899999999999999999999999976432211       01111110      111     112357


Q ss_pred             HHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          314 LTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       314 ~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      +.++|.+||..||++||    ++.+++++
T Consensus       285 l~~li~~~l~~dP~~Rp----s~~ell~~  309 (321)
T 2qkw_B          285 FGDTAVKCLALSSEDRP----SMGDVLWK  309 (321)
T ss_dssp             HHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             HHHHHHHHcCCCcccCc----CHHHHHHH
Confidence            88999999999999999    68888864

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-46  Score=372.59  Aligned_cols=259  Identities=22%  Similarity=0.345  Sum_probs=196.3

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLE   93 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~   93 (412)
                      +.-.+|.+.+.||+|+||+||... ..    +++.||||++.+....       .+.+|+++|+.+ +|||||++++++.
T Consensus        21 i~~~~y~~~~~LG~G~~G~V~~~~-~~----~~~~vAvK~~~~~~~~-------~~~~E~~~l~~l~~HpnIv~l~~~~~   88 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAEGTIVYRG-MF----DNRDVAVKRILPECFS-------FADREVQLLRESDEHPNVIRYFCTEK   88 (432)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEEE-ES----SSSEEEEEEECTTTEE-------ECHHHHHHHHHSCCCTTBCCEEEEEE
T ss_pred             EccEEEecCCeeecCcCEEEEEEE-Ee----CCeEEEEEEECHHHHH-------HHHHHHHHHHhccCCCCcCeEEEEEe
Confidence            344569999999999999976432 23    3455999999665432       134599999999 7999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-----CCEEEcc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-----GHVTLTD  168 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-----g~vkL~D  168 (412)
                      +...+|+|||||. |+|..++.... ..+.+..+..++.||+.||.|||++||+||||||+|||++.+     ..+||+|
T Consensus        89 ~~~~~~lv~E~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~D  166 (432)
T 3p23_A           89 DRQFQYIAIELCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISD  166 (432)
T ss_dssp             ETTEEEEEEECCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECC
T ss_pred             cCCEEEEEEECCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEec
Confidence            9999999999996 58887776543 346666778999999999999999999999999999999532     3578999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+|+.......                                                            ........
T Consensus       167 FG~a~~~~~~~~------------------------------------------------------------~~~~~~~~  186 (432)
T 3p23_A          167 FGLCKKLAVGRH------------------------------------------------------------SFSRRSGV  186 (432)
T ss_dssp             TTEEECC------------------------------------------------------------------------C
T ss_pred             ccceeeccCCCc------------------------------------------------------------ceeecccc
Confidence            999976532100                                                            01122356


Q ss_pred             ccCCCCccceeecC---CCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCCCC----CCChHHHHHHHH
Q 042539          249 VGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPEFV----GQRTALTDLIQR  320 (412)
Q Consensus       249 ~gt~~Y~APE~l~~---~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~~----~~~~~~~dli~~  320 (412)
                      +||+.|+|||++.+   ..++.++|||||||++|||++ |..||...........+........    ..+..+.+||.+
T Consensus       187 ~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  266 (432)
T 3p23_A          187 PGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEK  266 (432)
T ss_dssp             CSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHH
T ss_pred             CCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHH
Confidence            79999999999984   556889999999999999999 9999976554443222211111111    123568899999


Q ss_pred             hhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          321 LLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                      ||+.||.+||    +++++++||||.++.|.
T Consensus       267 ~L~~dP~~Rp----s~~evl~hp~f~~~~~~  293 (432)
T 3p23_A          267 MIAMDPQKRP----SAKHVLKHPFFWSLEKQ  293 (432)
T ss_dssp             HSCSSGGGSC----CHHHHHTSTTTCCHHHH
T ss_pred             HHhCCHhhCC----CHHHHHhCccccChHHH
Confidence            9999999999    69999999999988873

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.9e-45  Score=350.76  Aligned_cols=250  Identities=25%  Similarity=0.317  Sum_probs=193.8

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhh--cCCCccceeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR--LSHPFLPKLLG   90 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~--l~hpnIv~l~~   90 (412)
                      ..+..++|++++.||+|+||+||+|++.      ++.||||++.....       ....+|.+++..  ++||||+++++
T Consensus         3 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~-------~~~~~e~~~~~~~~l~h~niv~~~~   69 (301)
T 3q4u_A            3 QRTVARDITLLECVGKGRYGEVWRGSWQ------GENVAVKIFSSRDE-------KSWFRETELYNTVMLRHENILGFIA   69 (301)
T ss_dssp             -CCCGGGCEEEEEEEECSSEEEEEEEET------TEEEEEEEECGGGH-------HHHHHHHHHHHHTCCCCTTBCCEEE
T ss_pred             cccccCcEEEEEeeccCCCcEEEEEEEC------CEEEEEEEeccccc-------hhhHHHHHHHHHhhccCcCeeeEEE
Confidence            3566789999999999999999999873      34499999965421       223346666666  78999999999


Q ss_pred             eEEe----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH--------HcCceeeeCCCCceEE
Q 042539           91 SLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH--------NMGIAYRDLKPENILI  158 (412)
Q Consensus        91 ~~~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH--------~~~iiHrDlKp~NiLl  158 (412)
                      ++.+    ...+|+|||||.||+|..++..   ..+++..+..++.||+.||+|||        ++||+||||||+|||+
T Consensus        70 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill  146 (301)
T 3q4u_A           70 SDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILV  146 (301)
T ss_dssp             EEEEEETTEEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEE
T ss_pred             eeccccCCCceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEE
Confidence            8654    3468999999999999888743   35999999999999999999999        9999999999999999


Q ss_pred             ccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          159 RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       159 ~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      +.++.+||+|||+|+.......                                                          
T Consensus       147 ~~~~~~kl~Dfg~a~~~~~~~~----------------------------------------------------------  168 (301)
T 3q4u_A          147 KKNGQCCIADLGLAVMHSQSTN----------------------------------------------------------  168 (301)
T ss_dssp             CTTSCEEECCCTTCEEEETTTT----------------------------------------------------------
T ss_pred             cCCCCEEEeeCCCeeecccccc----------------------------------------------------------
Confidence            9999999999999976532110                                                          


Q ss_pred             cCCCCCCcccccCCCCccceeecCC------CCCchhhHHHHHHHHHHHhhC----------CCCCCCC----CHHHHHH
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRGD------GHEFAVDWWALGILTYEMLYG----------TTPFRGK----NRKETFR  298 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~~------~~~~~~DiwSlGvil~ell~g----------~~Pf~~~----~~~~~~~  298 (412)
                       .........+||+.|+|||++.+.      .++.++|||||||++|||++|          ..||...    .......
T Consensus       169 -~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~  247 (301)
T 3q4u_A          169 -QLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMR  247 (301)
T ss_dssp             -EEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHH
T ss_pred             -cccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhh
Confidence             000112345799999999999876      445799999999999999999          8898653    2223333


Q ss_pred             HHhcCCCCCCC---------CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          299 NVLMKTPEFVG---------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       299 ~i~~~~~~~~~---------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .........+.         .++++.+||.+||+.||.+||    ++.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp----s~~~i~~  295 (301)
T 3q4u_A          248 KVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARL----TALRIKK  295 (301)
T ss_dssp             HHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSC----CHHHHHH
T ss_pred             HHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCC----CHHHHHH
Confidence            33322211111         236799999999999999999    6888875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2.8e-45  Score=378.39  Aligned_cols=254  Identities=20%  Similarity=0.264  Sum_probs=214.6

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..+++..++|++.+.||+|+||+||++.++..     ..||||+++.....     ...+.+|+++|++++|+||+++++
T Consensus       260 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-----~~vavK~~~~~~~~-----~~~~~~E~~~l~~l~hpniv~~~~  329 (535)
T 2h8h_A          260 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-----TRVAIKTLKPGTMS-----PEAFLQEAQVMKKLRHEKLVQLYA  329 (535)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSEEEEEEEETTT-----EEEEEEEECTTSSC-----HHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cceecchhhhhhheecccCCCeEEEEEEECCC-----ceEEEEEeCCCCCC-----HHHHHHHHHHHHhCCCCCEeeEEE
Confidence            35678889999999999999999999998642     34999999765431     235677999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+ +.+|||||||.||+|.+++.......+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus       330 ~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG  408 (535)
T 2h8h_A          330 VVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFG  408 (535)
T ss_dssp             EECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTT
T ss_pred             EEee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccc
Confidence            9876 679999999999999988875444458999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++.+......                                                              ......+
T Consensus       409 ~a~~~~~~~~~--------------------------------------------------------------~~~~~~~  426 (535)
T 2h8h_A          409 LARLIEDNEYT--------------------------------------------------------------ARQGAKF  426 (535)
T ss_dssp             STTTCCCHHHH--------------------------------------------------------------TTCSTTS
T ss_pred             cceecCCCcee--------------------------------------------------------------cccCCcC
Confidence            99765321100                                                              0112346


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |..|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+....  +....++..+.+||.+||..||+
T Consensus       427 ~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~  506 (535)
T 2h8h_A          427 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE  506 (535)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence            788999999999899999999999999999999 999999999888887776543  23346788999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    +++++++
T Consensus       507 ~RP----t~~~l~~  516 (535)
T 2h8h_A          507 ERP----TFEYLQA  516 (535)
T ss_dssp             GSC----CHHHHHH
T ss_pred             HCc----CHHHHHH
Confidence            999    5777775

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=5.4e-45  Score=346.54  Aligned_cols=253  Identities=19%  Similarity=0.246  Sum_probs=195.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee-EEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS-LETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~-~~~~   95 (412)
                      -++|++++.||+|+||+||+|++..++    +.||||++......      ..+.+|+.+++.++|++++..+.. +..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~~------~~~~~e~~~l~~l~~~~~i~~~~~~~~~~   77 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAG----EEVAIKLECVKTKH------PQLHIESKIYKMMQGGVGIPTIRWCGAEG   77 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTT----EEEEEEEEEC---C------CCHHHHHHHHHHHTTSTTCCCEEEEEEET
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCC----ceEEEEeecccccc------hHHHHHHHHHHHhcCCCCCCeeeeecCCC
Confidence            478999999999999999999987754    45999987554322      235569999999998776655554 4677


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE---ccCCCEEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl---~~~g~vkL~DFGla  172 (412)
                      +..++||||+ |++|..++.... ..+++.++..++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a  155 (296)
T 4hgt_A           78 DYNVMVMELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA  155 (296)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTC
T ss_pred             CceEEEEEcc-CCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccc
Confidence            8899999999 999988876433 459999999999999999999999999999999999999   78899999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.........                                                        ...........||+
T Consensus       156 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~gt~  179 (296)
T 4hgt_A          156 KKYRDARTHQ--------------------------------------------------------HIPYRENKNLTGTA  179 (296)
T ss_dssp             EECBCTTTCC--------------------------------------------------------BCCCCCSCCCCSCG
T ss_pred             eeccCcccCc--------------------------------------------------------cCCCCcccccCCCc
Confidence            8653211000                                                        00112234568999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH---HHHHHHhcC---CC---CCCCCChHHHHHHHHhhh
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK---ETFRNVLMK---TP---EFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~---~~~~~i~~~---~~---~~~~~~~~~~dli~~~L~  323 (412)
                      .|+|||++.+..++.++|||||||++|+|++|+.||.+.+..   ..+..+...   .+   .....++++.+||.+||+
T Consensus       180 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  259 (296)
T 4hgt_A          180 RYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRS  259 (296)
T ss_dssp             GGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999874321   122222111   11   124568899999999999


Q ss_pred             hCCCccCCCCCChhhhhc
Q 042539          324 KDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~  341 (412)
                      .||++||    +++++++
T Consensus       260 ~~p~~Rp----t~~~l~~  273 (296)
T 4hgt_A          260 LRFDDKP----DYSYLRQ  273 (296)
T ss_dssp             SCTTCCC----CHHHHHH
T ss_pred             cCCCCCC----CHHHHHH
Confidence            9999999    5777765

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.3e-45  Score=353.16  Aligned_cols=263  Identities=22%  Similarity=0.275  Sum_probs=203.1

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|++++.||+|+||.||+|++..++    +.||||++....    ......+.+|+.+++.++||||+++++++.
T Consensus        25 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   96 (317)
T 2buj_A           25 IIDNKHYLFIQKLGEGGFSYVDLVEGLHDG----HFYALKRILCHE----QQDREEAQREADMHRLFNHPNILRLVAYCL   96 (317)
T ss_dssp             EETTEEEEEEEEEEC--CEEEEEEEETTTC----CEEEEEEEEESS----HHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred             EECCeEEEEEEEecCCCCeEEEEEEecCCC----cEEEEEEEecCC----HHHHHHHHHHHHHHhhcCCCCeeeEEEEEE
Confidence            456688999999999999999999987754    459999986542    234566778999999999999999999987


Q ss_pred             e----CCeEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEc
Q 042539           94 T----DEFLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLT  167 (412)
Q Consensus        94 ~----~~~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~  167 (412)
                      .    ...+|+|||||.||+|..++...  ....+++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+
T Consensus        97 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~  176 (317)
T 2buj_A           97 RERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLM  176 (317)
T ss_dssp             EEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEEC
T ss_pred             eccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEE
Confidence            3    34789999999999998887653  23569999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++............                                                      ........
T Consensus       177 dfg~~~~~~~~~~~~~~~------------------------------------------------------~~~~~~~~  202 (317)
T 2buj_A          177 DLGSMNQACIHVEGSRQA------------------------------------------------------LTLQDWAA  202 (317)
T ss_dssp             CCSSCEESCEEEESHHHH------------------------------------------------------HHHHHHHH
T ss_pred             ecCcchhccccccccccc------------------------------------------------------cccccccc
Confidence            999987642211000000                                                      00000123


Q ss_pred             cccCCCCccceeecCCC---CCchhhHHHHHHHHHHHhhCCCCCCCCCHH--HHHHHHhc--CCCCCCCCChHHHHHHHH
Q 042539          248 FVGTEEYVSPEVVRGDG---HEFAVDWWALGILTYEMLYGTTPFRGKNRK--ETFRNVLM--KTPEFVGQRTALTDLIQR  320 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~---~~~~~DiwSlGvil~ell~g~~Pf~~~~~~--~~~~~i~~--~~~~~~~~~~~~~dli~~  320 (412)
                      ..||+.|+|||++.+..   ++.++|||||||++|+|++|+.||......  .....+..  ..+.....+.++.+||.+
T Consensus       203 ~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  282 (317)
T 2buj_A          203 QRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNS  282 (317)
T ss_dssp             HHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHH
T ss_pred             ccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHHH
Confidence            46899999999998664   588999999999999999999999542110  11111111  223345678999999999


Q ss_pred             hhhhCCCccCCCCCChhhhhcC
Q 042539          321 LLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       321 ~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ||..||.+||    ++.+++++
T Consensus       283 ~l~~dp~~Rp----s~~~ll~~  300 (317)
T 2buj_A          283 MMTVDPHQRP----HIPLLLSQ  300 (317)
T ss_dssp             HTCSSGGGSC----CHHHHHHH
T ss_pred             HhhcChhhCC----CHHHHHHH
Confidence            9999999999    68888874

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=3.9e-45  Score=367.98  Aligned_cols=253  Identities=28%  Similarity=0.377  Sum_probs=189.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~   96 (412)
                      +.|.+.+.||+|+||+||.+.. .    +++.||||++....       ...+.+|+.+++++ +|||||++++++.+++
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~-~----~g~~vAvK~~~~~~-------~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~   82 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGS-F----QGRPVAVKRMLIDF-------CDIALMEIKLLTESDDHPNVIRYYCSETTDR   82 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEE-S----SSSEEEEEEEEGGG-------HHHHHHHHHHHHHHTTSTTBCCEEEEEECSS
T ss_pred             heeeccCeEeeCCCeEEEEEEE-E----CCeEEEEEEEcHHH-------HHHHHHHHHHHHhccCCCCcCeEEEEEecCC
Confidence            4456678899999999987543 2    34569999986542       22456799999987 7999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCC-----CCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC----------
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRV-----FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS----------  161 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~-----l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~----------  161 (412)
                      .+|+|||||. |+|.+++.......     .++..+..++.||+.||+|||++||+||||||+|||++.+          
T Consensus        83 ~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~  161 (434)
T 2rio_A           83 FLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTG  161 (434)
T ss_dssp             EEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTC
T ss_pred             eEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccC
Confidence            9999999995 59988876543211     1333467799999999999999999999999999999764          


Q ss_pred             ---CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccc
Q 042539          162 ---GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQS  238 (412)
Q Consensus       162 ---g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                         +.+||+|||+|+.......                                                          
T Consensus       162 ~~~~~~kL~DFG~a~~~~~~~~----------------------------------------------------------  183 (434)
T 2rio_A          162 AENLRILISDFGLCKKLDSGQS----------------------------------------------------------  183 (434)
T ss_dssp             CCSCEEEECCCTTCEECCC-------------------------------------------------------------
T ss_pred             CCceEEEEcccccceecCCCCc----------------------------------------------------------
Confidence               4899999999986532110                                                          


Q ss_pred             cCCCCCCcccccCCCCccceeecC-------CCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCCCCC-
Q 042539          239 FDNGERSNSFVGTEEYVSPEVVRG-------DGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPEFVG-  309 (412)
Q Consensus       239 ~~~~~~~~~~~gt~~Y~APE~l~~-------~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~~~~-  309 (412)
                       .........+||+.|+|||++.+       ..++.++|||||||++|||++ |..||.+....+  .+++........ 
T Consensus       184 -~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~i~~~~~~~~~~  260 (434)
T 2rio_A          184 -SFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE--SNIIRGIFSLDEM  260 (434)
T ss_dssp             ------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH--HHHHHTCCCCCCC
T ss_pred             -cceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH--HHHhcCCCCcccc
Confidence             00011234579999999999976       567999999999999999998 999998754433  233333222211 


Q ss_pred             -------CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          310 -------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       310 -------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                             .++++.+||.+||+.||.+||    ++.++++||||...
T Consensus       261 ~~~~~~~~~~~~~~li~~~L~~dP~~Rp----s~~eil~hp~f~~~  302 (434)
T 2rio_A          261 KCLHDRSLIAEATDLISQMIDHDPLKRP----TAMKVLRHPLFWPK  302 (434)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTCSSGGGSC----CHHHHHTSGGGSCH
T ss_pred             cccccccchHHHHHHHHHHhhCChhhCC----CHHHHHhCCccCCc
Confidence                   236899999999999999999    69999999999754

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-45  Score=349.81  Aligned_cols=245  Identities=24%  Similarity=0.379  Sum_probs=197.6

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      ..+..++|++.+.||+|+||+||++++..      ..||+|++....      ..+.+.+|++++++++||||+++++++
T Consensus         3 ~~i~~~~~~~~~~lg~G~~g~V~~~~~~~------~~vavK~~~~~~------~~~~~~~E~~~l~~l~hp~iv~~~~~~   70 (307)
T 2eva_A            3 HMIDYKEIEVEEVVGRGAFGVVCKAKWRA------KDVAIKQIESES------ERKAFIVELRQLSRVNHPNIVKLYGAC   70 (307)
T ss_dssp             CBCCGGGEEEEEEEECCSSSEEEEEEETT------EEEEEEECSSTT------HHHHHHHHHHHHHHCCCTTBCCEEEBC
T ss_pred             CcCCHhHeeeeeEeecCCCceEEEEEECC------eeEEEEEecChh------HHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence            45788999999999999999999998752      349999986432      245677799999999999999999988


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHH---cCceeeeCCCCceEEccCCC-EEEc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQND-RVFSPSVIRFYLSEIICAIEHLHN---MGIAYRDLKPENILIRQSGH-VTLT  167 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~-~~l~~~~~~~~~~qi~~aL~yLH~---~~iiHrDlKp~NiLl~~~g~-vkL~  167 (412)
                      .+  ..|+||||+.||+|..++..... ..+++..+..++.|++.||.|||+   +||+||||||+|||++.+|. +||+
T Consensus        71 ~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~  148 (307)
T 2eva_A           71 LN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKIC  148 (307)
T ss_dssp             TT--TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEEC
T ss_pred             cC--CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEc
Confidence            74  48999999999999988765432 237889999999999999999999   89999999999999999887 7999


Q ss_pred             cccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcc
Q 042539          168 DFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS  247 (412)
Q Consensus       168 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (412)
                      |||+++....                                                                  ....
T Consensus       149 Dfg~~~~~~~------------------------------------------------------------------~~~~  162 (307)
T 2eva_A          149 DFGTACDIQT------------------------------------------------------------------HMTN  162 (307)
T ss_dssp             CCCC----------------------------------------------------------------------------
T ss_pred             cccccccccc------------------------------------------------------------------cccc
Confidence            9999864421                                                                  0112


Q ss_pred             cccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC--HHHHHHHHhcCC--CCCCCCChHHHHHHHHhhh
Q 042539          248 FVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN--RKETFRNVLMKT--PEFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       248 ~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~  323 (412)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|+.||....  .......+....  +.....++.+.+||.+||+
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  242 (307)
T 2eva_A          163 NKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWS  242 (307)
T ss_dssp             --CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTC
T ss_pred             CCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhc
Confidence            358999999999999999999999999999999999999998643  333333333322  2334678999999999999


Q ss_pred             hCCCccCCCCCChhhhhc
Q 042539          324 KDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~  341 (412)
                      .||.+||    +++++++
T Consensus       243 ~dp~~Rp----s~~ell~  256 (307)
T 2eva_A          243 KDPSQRP----SMEEIVK  256 (307)
T ss_dssp             SSGGGSC----CHHHHHH
T ss_pred             CChhhCc----CHHHHHH
Confidence            9999999    6888876

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=9.1e-45  Score=381.36  Aligned_cols=255  Identities=20%  Similarity=0.261  Sum_probs=205.2

Q ss_pred             CccCceee-eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           16 DLDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~-~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      ..+.+.+. ++||+|+||+||+|.+....  ++..||||+++....  .......+.+|+++|++++|||||++++++..
T Consensus       366 ~~~~~~l~~~~LG~G~fG~Vy~~~~~~~~--~~~~vAvK~~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~  441 (635)
T 4fl3_A          366 DRKLLTLEDKELGSGNFGTVKKGYYQMKK--VVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMIGICEA  441 (635)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSS--CEEEEEEEEECGGGG--CGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred             cchhccccCCEeccCCCEEEEEEEEcCCC--cceEEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            33444443 48999999999999664322  345699999976543  22335667889999999999999999999964


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                       +.+++|||||.||+|..++...  ..+++.++..++.||+.||+|||++|||||||||+|||++.++.+||+|||+|+.
T Consensus       442 -~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~  518 (635)
T 4fl3_A          442 -ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKA  518 (635)
T ss_dssp             -SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHH
T ss_pred             -CCEEEEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccc
Confidence             5689999999999999888654  3599999999999999999999999999999999999999999999999999986


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +......                                                            ........||+.|
T Consensus       519 ~~~~~~~------------------------------------------------------------~~~~~~~~~t~~y  538 (635)
T 4fl3_A          519 LRADENY------------------------------------------------------------YKAQTHGKWPVKW  538 (635)
T ss_dssp             TTC-------------------------------------------------------------------------CGGG
T ss_pred             cccCccc------------------------------------------------------------cccccCCCCceee
Confidence            5321110                                                            0111233578899


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||++.+..++.++|||||||++|||++ |+.||.+.+..+....+....  .....+++++.+||.+||..||++|| 
T Consensus       539 ~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RP-  617 (635)
T 4fl3_A          539 YAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRP-  617 (635)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSC-
T ss_pred             eChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCc-
Confidence            99999999999999999999999999998 999999999888887776543  22345789999999999999999999 


Q ss_pred             CCCChhhhhc
Q 042539          332 YLRGACEIKE  341 (412)
Q Consensus       332 ~~~~~~e~l~  341 (412)
                         +++++++
T Consensus       618 ---s~~~l~~  624 (635)
T 4fl3_A          618 ---GFAAVEL  624 (635)
T ss_dssp             ---CHHHHHH
T ss_pred             ---CHHHHHH
Confidence               5777764

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.9e-46  Score=365.19  Aligned_cols=256  Identities=18%  Similarity=0.225  Sum_probs=199.2

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE-eCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE-TDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~-~~~   96 (412)
                      ..|++.+.||+|+||+||+|++...+. ....||+|+++...   .......+.+|+.++++++||||+++++++. .++
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~  164 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDG-KKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG  164 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTT-EEEEEEEEECCSCS---CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSS
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCC-cEEEEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCC
Confidence            457889999999999999998764332 23458999986532   2234567788999999999999999999864 556


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ..|+|||||.||+|..++.... ..+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.+.
T Consensus       165 ~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~  243 (373)
T 3c1x_A          165 SPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY  243 (373)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             CeEEEEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccc
Confidence            8899999999999998876533 458899999999999999999999999999999999999999999999999997653


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ....                                                           ..........||+.|+|
T Consensus       244 ~~~~-----------------------------------------------------------~~~~~~~~~~~~~~y~a  264 (373)
T 3c1x_A          244 DKEF-----------------------------------------------------------DSVHNKTGAKLPVKWMA  264 (373)
T ss_dssp             -------------------------------------------------------------------------CCGGGSC
T ss_pred             cccc-----------------------------------------------------------ccccccCCCCCcccccC
Confidence            2110                                                           00011123457889999


Q ss_pred             ceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          257 PEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       257 PE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ||++.+..++.++|||||||++|||++ |.+||.+.+..+....+.....  ....+++.+.++|.+||..||++||   
T Consensus       265 PE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RP---  341 (373)
T 3c1x_A          265 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRP---  341 (373)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCc---
Confidence            999999999999999999999999999 8899988766665555554432  2345678999999999999999999   


Q ss_pred             CChhhhhc
Q 042539          334 RGACEIKE  341 (412)
Q Consensus       334 ~~~~e~l~  341 (412)
                       ++.++++
T Consensus       342 -s~~ell~  348 (373)
T 3c1x_A          342 -SFSELVS  348 (373)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             5788876

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.3e-45  Score=353.34  Aligned_cols=264  Identities=23%  Similarity=0.337  Sum_probs=185.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~   92 (412)
                      ++.-.+|+++++||+|+||.||+|++..++.    .||||++....    ......+.+|+.+++++. ||||+++++++
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~----~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~   95 (337)
T 3ll6_A           24 ELGELRLRVRRVLAEGGFAFVYEAQDVGSGR----EYALKRLLSNE----EEKNRAIIQEVCFMKKLSGHPNIVQFCSAA   95 (337)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEEETTTCC----EEEEEEEEESS----HHHHHHHHHHHHHHHHHTTSTTBCCEEEEE
T ss_pred             eccCceEEEEEEEccCCceEEEEEEECCCCc----EEEEEEecCCc----hHHHHHHHHHHHHHHHhccCCChhhccccc
Confidence            4455699999999999999999999977554    49999985543    234456778999999996 99999999998


Q ss_pred             E--------eCCeEEEEeeccCCCCchhHHHh-hCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEccC
Q 042539           93 E--------TDEFLAWAVPYCPGGDLNVLRYK-QNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIRQS  161 (412)
Q Consensus        93 ~--------~~~~~~lv~e~~~gg~L~~~~~~-~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~~~  161 (412)
                      .        ....+++|||||. |+|.+++.. ...+.+++.++..++.||+.||.|||++|  |+||||||+|||++.+
T Consensus        96 ~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~  174 (337)
T 3ll6_A           96 SIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQ  174 (337)
T ss_dssp             EECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTT
T ss_pred             cccccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCC
Confidence            4        3346899999996 577666554 34456999999999999999999999999  9999999999999999


Q ss_pred             CCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCC
Q 042539          162 GHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDN  241 (412)
Q Consensus       162 g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
                      |.+||+|||+++...........                                                   ......
T Consensus       175 ~~~kl~Dfg~~~~~~~~~~~~~~---------------------------------------------------~~~~~~  203 (337)
T 3ll6_A          175 GTIKLCDFGSATTISHYPDYSWS---------------------------------------------------AQRRAL  203 (337)
T ss_dssp             SCEEBCCCTTCBCCSSCC--------------------------------------------------------------
T ss_pred             CCEEEecCccceeccccCccccc---------------------------------------------------cccccc
Confidence            99999999999865322110000                                                   000001


Q ss_pred             CCCCcccccCCCCccceee---cCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHH
Q 042539          242 GERSNSFVGTEEYVSPEVV---RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLI  318 (412)
Q Consensus       242 ~~~~~~~~gt~~Y~APE~l---~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli  318 (412)
                      .......+||+.|+|||++   .+..++.++|||||||++|+|++|..||.+........... ..+.....+..+.+||
T Consensus       204 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li  282 (337)
T 3ll6_A          204 VEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKY-SIPPHDTQYTVFHSLI  282 (337)
T ss_dssp             --------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------C-CCCTTCCSSGGGHHHH
T ss_pred             chhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhcCcc-cCCcccccchHHHHHH
Confidence            1122356799999999998   56678999999999999999999999998765544333222 2233345567899999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhcC
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      .+||+.||.+||    ++.++++|
T Consensus       283 ~~~l~~~p~~Rp----s~~e~l~~  302 (337)
T 3ll6_A          283 RAMLQVNPEERL----SIAEVVHQ  302 (337)
T ss_dssp             HHHSCSSGGGSC----CHHHHHHH
T ss_pred             HHHccCChhhCc----CHHHHHHH
Confidence            999999999999    68999875

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1.6e-45  Score=355.96  Aligned_cols=257  Identities=19%  Similarity=0.230  Sum_probs=201.9

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+..++|++.+.||+|+||+||+|++.     +++.||||++......   .....+.+|+.+++.++||||+++++++.
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   97 (326)
T 3uim_A           26 QVASDNFSNKNILGRGGFGKVYKGRLA-----DGTLVAVKRLKEERTQ---GGELQFQTEVEMISMAVHRNLLRLRGFCM   97 (326)
T ss_dssp             HTTTTSSCSTTEEECCSSSEEEEECCS-----SSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred             HHHhhccccceeEecCCCcEEEEEEec-----CCCEEEEEEeccccCc---hHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence            345679999999999999999999753     2345999999765422   12235677999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHHc---CceeeeCCCCceEEccCCCEEEcc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQND--RVFSPSVIRFYLSEIICAIEHLHNM---GIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~--~~l~~~~~~~~~~qi~~aL~yLH~~---~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      +.+..++|||||.||+|..++.....  ..+++..+..++.|++.||+|||++   ||+||||||+|||++.++.+||+|
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~D  177 (326)
T 3uim_A           98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGD  177 (326)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECC
T ss_pred             cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEecc
Confidence            99999999999999999988776432  3489999999999999999999999   999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++.....                                                              ........
T Consensus       178 fg~~~~~~~~--------------------------------------------------------------~~~~~~~~  195 (326)
T 3uim_A          178 FGLAKLMDYK--------------------------------------------------------------DTHVTTAV  195 (326)
T ss_dssp             CSSCEECCSS--------------------------------------------------------------SSCEECCC
T ss_pred             CccccccCcc--------------------------------------------------------------cccccccc
Confidence            9999754211                                                              11122345


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC--------HHHHHHHHhcCC--CCC------CC---
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN--------RKETFRNVLMKT--PEF------VG---  309 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--------~~~~~~~i~~~~--~~~------~~---  309 (412)
                      +||+.|+|||++.+..++.++|||||||++|+|++|+.||....        ............  ...      ..   
T Consensus       196 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (326)
T 3uim_A          196 RGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD  275 (326)
T ss_dssp             CSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCH
T ss_pred             cCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCH
Confidence            69999999999998889999999999999999999999996211        111111111110  000      01   


Q ss_pred             -CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCC
Q 042539          310 -QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF  344 (412)
Q Consensus       310 -~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~f  344 (412)
                       .+..+.+||.+||+.||.+||    ++.++++|-.
T Consensus       276 ~~~~~l~~li~~cl~~dP~~Rp----s~~ell~~L~  307 (326)
T 3uim_A          276 EEVEQLIQVALLCTQSSPMERP----KMSEVVRMLE  307 (326)
T ss_dssp             HHHHHHHHHHHHHTCSCGGGSC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCccCC----CHHHHHHHhc
Confidence             125799999999999999999    6899988643

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=379.66  Aligned_cols=256  Identities=19%  Similarity=0.242  Sum_probs=206.9

Q ss_pred             CCCccCceeee-eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           14 SLDLDNLKALK-ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~-~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .+..+++.+.+ .||+|+||+||+|.++..+  .+..||||++++...   ......+.+|+++|++++|||||++++++
T Consensus       331 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~--~~~~vAvK~~~~~~~---~~~~~~~~~E~~il~~l~hpniv~l~~~~  405 (613)
T 2ozo_A          331 FLKRDNLLIADIELGCGNFGSVRQGVYRMRK--KQIDVAIKVLKQGTE---KADTEEMMREAQIMHQLDNPYIVRLIGVC  405 (613)
T ss_dssp             BCCTTSEEEEEEEEEECSSSEEEEEEEECSS--CEEEEEEEECCCCCS---STTHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             eccccceeEcCcEEecCCCcEEEEEEEecCC--CcEEEEEEEcCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEe
Confidence            34456667777 8999999999999876433  345599999976532   12345677899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+ +.+|+|||||.||+|..++... ...+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|
T Consensus       406 ~~-~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla  483 (613)
T 2ozo_A          406 QA-EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLS  483 (613)
T ss_dssp             ES-SSEEEEEECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTT
T ss_pred             cc-CCeEEEEEeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCc
Confidence            76 5699999999999998887543 346999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+.....                                                            .........+|+
T Consensus       484 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~  503 (613)
T 2ozo_A          484 KALGADDS------------------------------------------------------------YYTARSAGKWPL  503 (613)
T ss_dssp             TTCC--------------------------------------------------------------------------CC
T ss_pred             ccccCCCc------------------------------------------------------------eeeeccCCCCcc
Confidence            76521110                                                            000112234678


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+....+..+.  .....+++++.+||.+||..||++|
T Consensus       504 ~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~R  583 (613)
T 2ozo_A          504 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDR  583 (613)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTS
T ss_pred             ceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHC
Confidence            9999999999999999999999999999998 999999988888877776543  2234578999999999999999999


Q ss_pred             CCCCCChhhhh
Q 042539          330 LGYLRGACEIK  340 (412)
Q Consensus       330 ~~~~~~~~e~l  340 (412)
                      |    ++.+++
T Consensus       584 P----s~~~l~  590 (613)
T 2ozo_A          584 P----DFLTVE  590 (613)
T ss_dssp             C----CHHHHH
T ss_pred             c----CHHHHH
Confidence            9    566665

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=1.2e-44  Score=344.35  Aligned_cols=253  Identities=19%  Similarity=0.250  Sum_probs=199.2

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee-EEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS-LETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~-~~~~   95 (412)
                      .++|++++.||+|+||+||+|++..++    +.||||++......      ..+.+|+.+++.++|++++..+.. +..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~~------~~~~~e~~~l~~l~~~~~i~~~~~~~~~~   77 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAG----EEVAIKLECVKTKH------PQLHIESKIYKMMQGGVGIPTIRWCGAEG   77 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTT----EEEEEEEEESCSSC------CHHHHHHHHHHHHTTSTTCCCEEEEEEET
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCC----cEEEEEEecCCcch------hHHHHHHHHHHHhhcCCCCCccccccCCC
Confidence            478999999999999999999987644    45999998654321      235669999999998776555554 4677


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEE---ccCCCEEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl---~~~g~vkL~DFGla  172 (412)
                      +..++||||+ |++|.+++.... ..+++.++..++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~  155 (296)
T 3uzp_A           78 DYNVMVMELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA  155 (296)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTC
T ss_pred             CceEEEEEec-CCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCc
Confidence            8899999999 999988876433 459999999999999999999999999999999999999   48899999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.........                                                        ..........+||+
T Consensus       156 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~gt~  179 (296)
T 3uzp_A          156 KKYRDARTHQ--------------------------------------------------------HIPYRENKNLTGTA  179 (296)
T ss_dssp             EECBCTTTCC--------------------------------------------------------BCCCCCSCCCCSCT
T ss_pred             cccccccccc--------------------------------------------------------cccccccccccccc
Confidence            7653211000                                                        00112234568999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH---HHHHHHHhcC---CC---CCCCCChHHHHHHHHhhh
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR---KETFRNVLMK---TP---EFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~~~~~i~~~---~~---~~~~~~~~~~dli~~~L~  323 (412)
                      .|+|||++.+..++.++|||||||++|+|++|+.||.+.+.   .+.+..+...   .+   .....++++.+||.+||+
T Consensus       180 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  259 (296)
T 3uzp_A          180 RYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRS  259 (296)
T ss_dssp             TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHT
T ss_pred             ccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987431   1222222211   11   124578899999999999


Q ss_pred             hCCCccCCCCCChhhhhc
Q 042539          324 KDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~  341 (412)
                      .||.+||    +++++++
T Consensus       260 ~dp~~Rp----s~~~l~~  273 (296)
T 3uzp_A          260 LRFDDKP----DYSYLRQ  273 (296)
T ss_dssp             SCTTCCC----CHHHHHH
T ss_pred             cCcCcCC----CHHHHHH
Confidence            9999999    5777765

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=1.9e-44  Score=344.77  Aligned_cols=237  Identities=26%  Similarity=0.435  Sum_probs=192.5

Q ss_pred             CCCCCCCCccCceee-eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHH-hhcCCCccc
Q 042539            9 PQTTPSLDLDNLKAL-KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL-SRLSHPFLP   86 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~-~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il-~~l~hpnIv   86 (412)
                      .+......+++|.++ +.||+|+||.||+|.++.++.    .||+|+++...         ...+|+.++ +.++||||+
T Consensus         8 ~~~~~~~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~----~vaiK~~~~~~---------~~~~e~~~~~~~~~h~~i~   74 (299)
T 3m2w_A            8 LQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQE----KFALKMLQDCP---------KARREVELHWRASQCPHIV   74 (299)
T ss_dssp             CCCBCSCGGGTEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECSH---------HHHHHHHHHHHHTTSTTBC
T ss_pred             ccCcccccccchhhcCcccccCCCeEEEEEEEcCCCc----EEEEEEecccH---------HHHHHHHHHHHhccCCCch
Confidence            344556677899998 789999999999999987544    49999996421         234588887 555899999


Q ss_pred             eeeeeEEe----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc--
Q 042539           87 KLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ--  160 (412)
Q Consensus        87 ~l~~~~~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~--  160 (412)
                      ++++++.+    +..+|+|||||.||+|..++.......+++.+++.++.||+.||.|||++||+||||||+|||++.  
T Consensus        75 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~  154 (299)
T 3m2w_A           75 RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKR  154 (299)
T ss_dssp             CEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSS
T ss_pred             hHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCC
Confidence            99999987    678999999999999999888766567999999999999999999999999999999999999998  


Q ss_pred             -CCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc
Q 042539          161 -SGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF  239 (412)
Q Consensus       161 -~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                       ++.+||+|||+++...                                                               
T Consensus       155 ~~~~~kl~Dfg~a~~~~---------------------------------------------------------------  171 (299)
T 3m2w_A          155 PNAILKLTDFGFAKETT---------------------------------------------------------------  171 (299)
T ss_dssp             TTCCEEECCCTTCEECT---------------------------------------------------------------
T ss_pred             CCCcEEEeccccccccc---------------------------------------------------------------
Confidence             7899999999886431                                                               


Q ss_pred             CCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc----CCCCC-----CCC
Q 042539          240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM----KTPEF-----VGQ  310 (412)
Q Consensus       240 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~----~~~~~-----~~~  310 (412)
                                            +..++.++|||||||++|+|++|+.||.+.+.......+..    ....+     ...
T Consensus       172 ----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (299)
T 3m2w_A          172 ----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEV  229 (299)
T ss_dssp             ----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTS
T ss_pred             ----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccC
Confidence                                  13467899999999999999999999987655443221111    11111     356


Q ss_pred             ChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       311 ~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      ++++.+||.+||..||.+||    +++++++||||.+
T Consensus       230 ~~~~~~li~~~l~~dP~~Rp----s~~e~l~hp~~~~  262 (299)
T 3m2w_A          230 SEEVKMLIRNLLKTEPTQRM----TITEFMNHPWIMQ  262 (299)
T ss_dssp             CHHHHHHHHHHTCSSTTTSC----CHHHHHTSHHHHT
T ss_pred             CHHHHHHHHHHcccChhhCC----CHHHHhcChhhcc
Confidence            88999999999999999999    6999999999975

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=3.7e-45  Score=354.67  Aligned_cols=257  Identities=26%  Similarity=0.376  Sum_probs=188.6

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .+.+.+++|++++.||+|+||+||+|++.      ++.||||++.....   ..  .....|+..+..++|+||+++++.
T Consensus         7 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~~---~~--~~~e~~~~~~~~~~h~~i~~~~~~   75 (336)
T 3g2f_A            7 EPSLDLDNLKLLELIGRGRYGAVYKGSLD------ERPVAVKVFSFANR---QN--FINEKNIYRVPLMEHDNIARFIVG   75 (336)
T ss_dssp             --CCCTTSEEEEEEEEECSSEEEEEEEET------TEEEEEEEEEGGGH---HH--HHHHHHHHTSTTCCCTTBCCEEEE
T ss_pred             CCCcChHHhheeeecccCCCeEEEEEEEC------CeEEEEEEeeccch---hh--HHHHHHHHHHHhccCcchhhheec
Confidence            45788999999999999999999999763      34599999965432   11  111234455556899999999986


Q ss_pred             EEe-----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc---------CceeeeCCCCceE
Q 042539           92 LET-----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM---------GIAYRDLKPENIL  157 (412)
Q Consensus        92 ~~~-----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~---------~iiHrDlKp~NiL  157 (412)
                      +..     ...+|+|||||.||+|..++....   +++..+..++.||+.||.|||++         ||+||||||+|||
T Consensus        76 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nil  152 (336)
T 3g2f_A           76 DERVTADGRMEYLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVL  152 (336)
T ss_dssp             EEEECTTSCEEEEEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEE
T ss_pred             ccccccCCCceEEEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEE
Confidence            542     336899999999999998886543   68999999999999999999999         9999999999999


Q ss_pred             EccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccc
Q 042539          158 IRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQ  237 (412)
Q Consensus       158 l~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (412)
                      ++.+|.+||+|||+++.+.......                                                       
T Consensus       153 l~~~~~~kL~DFG~a~~~~~~~~~~-------------------------------------------------------  177 (336)
T 3g2f_A          153 VKNDGTCVISDFGLSMRLTGNRLVR-------------------------------------------------------  177 (336)
T ss_dssp             ECTTSCEEECCCTTCEECSSSSCC--------------------------------------------------------
T ss_pred             EcCCCcEEEeeccceeecccccccC-------------------------------------------------------
Confidence            9999999999999998653211000                                                       


Q ss_pred             ccCCCCCCcccccCCCCccceeecC-------CCCCchhhHHHHHHHHHHHhhCCCCCC-CCC----------------H
Q 042539          238 SFDNGERSNSFVGTEEYVSPEVVRG-------DGHEFAVDWWALGILTYEMLYGTTPFR-GKN----------------R  293 (412)
Q Consensus       238 ~~~~~~~~~~~~gt~~Y~APE~l~~-------~~~~~~~DiwSlGvil~ell~g~~Pf~-~~~----------------~  293 (412)
                      ...........+||+.|+|||++.+       ..++.++|||||||++|||++|..||. +..                .
T Consensus       178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~  257 (336)
T 3g2f_A          178 PGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPT  257 (336)
T ss_dssp             --------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCC
T ss_pred             ccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCch
Confidence            0001122335679999999999987       345678999999999999999966653 221                0


Q ss_pred             HHHHHHHhcCC---CCCCC-------CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          294 KETFRNVLMKT---PEFVG-------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       294 ~~~~~~i~~~~---~~~~~-------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+.........   +.++.       .++++.+||.+||..||++||    ++.++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp----s~~e~l~  311 (336)
T 3g2f_A          258 FEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARL----TAQXAEE  311 (336)
T ss_dssp             HHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSC----CHHHHHH
T ss_pred             HHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCc----chHHHHH
Confidence            11112222211   22221       124799999999999999999    6888854

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.3e-45  Score=353.32  Aligned_cols=258  Identities=19%  Similarity=0.258  Sum_probs=208.3

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ...++..++|++++.||+|+||.||+|++..       .||+|+++......  ...+.+.+|+.++++++|+||+++++
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-------~~avk~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~   96 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-------EVAIRLIDIERDNE--DQLKAFKREVMAYRQTRHENVVLFMG   96 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS-------SEEEEECCCCSCCC--CCCCCCCTTGGGGTTCCCTTBCCCCE
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC-------eEEEEEeecCCCCH--HHHHHHHHHHHHHhcCCCCCEeEEEE
Confidence            4567888999999999999999999998754       29999997653211  12234556999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+.+.+++|||||.|++|..++... ...+++..+..++.||+.||.|||++||+||||||+|||++ +|.+||+|||
T Consensus        97 ~~~~~~~~~iv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg  174 (319)
T 2y4i_B           97 ACMSPPHLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFG  174 (319)
T ss_dssp             EEECSSCEEEECBCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCS
T ss_pred             EEecCCceEEEeecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecC
Confidence            999999999999999999998887543 34599999999999999999999999999999999999998 7899999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++........                                                          ..........|
T Consensus       175 ~~~~~~~~~~~----------------------------------------------------------~~~~~~~~~~g  196 (319)
T 2y4i_B          175 LFSISGVLQAG----------------------------------------------------------RREDKLRIQNG  196 (319)
T ss_dssp             CCC--------------------------------------------------------------------CCSCBCCSG
T ss_pred             Ccccccccccc----------------------------------------------------------ccccccccCCC
Confidence            98754211000                                                          11122334569


Q ss_pred             CCCCccceeecC---------CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHH
Q 042539          251 TEEYVSPEVVRG---------DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLI  318 (412)
Q Consensus       251 t~~Y~APE~l~~---------~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli  318 (412)
                      |+.|+|||++.+         ..++.++|||||||++|+|++|..||.+.+.......+......   ....+.++.++|
T Consensus       197 ~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  276 (319)
T 2y4i_B          197 WLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDIL  276 (319)
T ss_dssp             GGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHH
T ss_pred             cccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHH
Confidence            999999999875         34788999999999999999999999999888877776654322   224678999999


Q ss_pred             HHhhhhCCCccCCCCCChhhhhc
Q 042539          319 QRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       319 ~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .+||..||.+||    ++.++++
T Consensus       277 ~~~l~~~p~~Rp----t~~~l~~  295 (319)
T 2y4i_B          277 LFCWAFEQEERP----TFTKLMD  295 (319)
T ss_dssp             HHHHCSSTTTSC----CHHHHHH
T ss_pred             HHHhcCChhhCc----CHHHHHH
Confidence            999999999999    6888875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=5.8e-44  Score=376.59  Aligned_cols=258  Identities=20%  Similarity=0.323  Sum_probs=213.8

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ..++..++|++++.||+|+||+||+|.+...+. ....||||+++...   .......+.+|+.++++++||||++++++
T Consensus       384 ~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~  459 (656)
T 2j0j_A          384 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPEN-PAMAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGV  459 (656)
T ss_dssp             GTBCCGGGEEEEEEEECCSSCCEEEEEECCSSS-CCEEEEEEECSSTT---CHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccccccEEEeeEEeeCCCEEEEEEEEecCCC-ccEEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            346677899999999999999999999875443 34569999986542   23445678889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +. ++.+|+|||||.||+|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus       460 ~~-~~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~  537 (656)
T 2j0j_A          460 IT-ENPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGL  537 (656)
T ss_dssp             EC-SSSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCC
T ss_pred             Ee-cCceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCC
Confidence            85 467899999999999998876543 4589999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++.......                                                              .......||
T Consensus       538 a~~~~~~~~--------------------------------------------------------------~~~~~~~~t  555 (656)
T 2j0j_A          538 SRYMEDSTY--------------------------------------------------------------YKASKGKLP  555 (656)
T ss_dssp             CCSCCC------------------------------------------------------------------------CC
T ss_pred             CeecCCCcc--------------------------------------------------------------eeccCCCCC
Confidence            976521110                                                              111234578


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|+|||++.+..++.++|||||||++|||++ |..||.+.+..+....+....  +....+++.+.+||.+||..||.+
T Consensus       556 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  635 (656)
T 2j0j_A          556 IKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSR  635 (656)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhH
Confidence            89999999999999999999999999999997 999999999888887776543  233467899999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       636 RP----s~~el~~  644 (656)
T 2j0j_A          636 RP----RFTELKA  644 (656)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5788775

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=3e-46  Score=363.08  Aligned_cols=246  Identities=18%  Similarity=0.244  Sum_probs=189.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh----hhHHHHHHHHHHHHHHhhcC--------
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH----AKHEAERRARWEIRVLSRLS--------   81 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~----~~~~~~~~~~~Ei~il~~l~--------   81 (412)
                      .+..++|++++.||+|+||+||+|++.      ++.||||++.+....    ......+.+.+|+.+++.++        
T Consensus        16 ~~~~~~y~~~~~lG~G~~g~V~~~~~~------~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~   89 (336)
T 2vuw_A           16 CLPTEKLQRCEKIGEGVFGEVFQTIAD------HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCN   89 (336)
T ss_dssp             HSCHHHHHTCEEEEEETTEEEEEEEET------TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSS
T ss_pred             hcccccchheeeecccCceEEEEEEeC------CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccc
Confidence            466789999999999999999999872      245999999876421    11122355667888888886        


Q ss_pred             -CCccceee-----------------eeEEe-------------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHH
Q 042539           82 -HPFLPKLL-----------------GSLET-------------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY  130 (412)
Q Consensus        82 -hpnIv~l~-----------------~~~~~-------------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~  130 (412)
                       |+|||+++                 ++|.+             ++.+|+|||||.||++...+..   ..+++.+++.+
T Consensus        90 ~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i  166 (336)
T 2vuw_A           90 RTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSI  166 (336)
T ss_dssp             BCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHH
T ss_pred             cCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHH
Confidence             55555554                 44443             6799999999999976554432   45899999999


Q ss_pred             HHHHHHHHHHHH-HcCceeeeCCCCceEEccCC--------------------CEEEccccccchhhchhhhhhhcccCC
Q 042539          131 LSEIICAIEHLH-NMGIAYRDLKPENILIRQSG--------------------HVTLTDFDLSRNLVKKTAFEKQSLNNN  189 (412)
Q Consensus       131 ~~qi~~aL~yLH-~~~iiHrDlKp~NiLl~~~g--------------------~vkL~DFGla~~~~~~~~~~~~~~~~~  189 (412)
                      +.||+.||.||| ++||+||||||+|||++.+|                    .+||+|||+|+....            
T Consensus       167 ~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------------  234 (336)
T 2vuw_A          167 LHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------------  234 (336)
T ss_dssp             HHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------------
T ss_pred             HHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------------
Confidence            999999999999 99999999999999999988                    899999999975421            


Q ss_pred             CCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCchh
Q 042539          190 KFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAV  269 (412)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~  269 (412)
                                                                              ...+||+.|||||++.+.. +.++
T Consensus       235 --------------------------------------------------------~~~~gt~~y~aPE~~~g~~-~~~~  257 (336)
T 2vuw_A          235 --------------------------------------------------------GIVVFCDVSMDEDLFTGDG-DYQF  257 (336)
T ss_dssp             --------------------------------------------------------TEEECCCCTTCSGGGCCCS-SHHH
T ss_pred             --------------------------------------------------------CcEEEeecccChhhhcCCC-ccce
Confidence                                                                    1347999999999999876 8899


Q ss_pred             hHHHHHHH-HHHHhhCCCCCCCCCH-HHHHHHHhcCC----CC----CCCCChHHHHHHHHhhhhCCCccCCCCCChhhh
Q 042539          270 DWWALGIL-TYEMLYGTTPFRGKNR-KETFRNVLMKT----PE----FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEI  339 (412)
Q Consensus       270 DiwSlGvi-l~ell~g~~Pf~~~~~-~~~~~~i~~~~----~~----~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~  339 (412)
                      ||||||++ .++++.|..||.+... ......+....    ..    ....++++++||.+||++|         +++|+
T Consensus       258 Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d---------sa~e~  328 (336)
T 2vuw_A          258 DIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS---------SATDL  328 (336)
T ss_dssp             HHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS---------SHHHH
T ss_pred             ehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC---------CHHHH
Confidence            99998887 7778899999965321 11222333111    11    1124578999999999977         59999


Q ss_pred             h-cCCCCC
Q 042539          340 K-EHVFFK  346 (412)
Q Consensus       340 l-~h~ff~  346 (412)
                      + +||||+
T Consensus       329 l~~Hp~f~  336 (336)
T 2vuw_A          329 LCQHSLFK  336 (336)
T ss_dssp             HHHCGGGC
T ss_pred             HhcCCCcC
Confidence            9 999995

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=4.9e-45  Score=349.33  Aligned_cols=251  Identities=20%  Similarity=0.251  Sum_probs=198.8

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|...+.||+|+||+||+|.+.      +..||+|++............+.+.+|+.+++.++||||+++++++.+.+.+
T Consensus        32 ~~~~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~  105 (307)
T 2nru_A           32 ISVGGNKMGEGGFGVVYKGYVN------NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDL  105 (307)
T ss_dssp             TTTTCCEEEECSSEEEEEEESS------SCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             ccccCCccccCCCeEEEEEEEC------CceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCce
Confidence            3455689999999999999863      2349999997644323344566788899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           99 AWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      |+||||+.|++|..++.... ...+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....
T Consensus       106 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~  185 (307)
T 2nru_A          106 CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEK  185 (307)
T ss_dssp             EEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             EEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeeccccccccc
Confidence            99999999999988876432 34589999999999999999999999999999999999999999999999999875421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      .                                                             .........+||+.|+||
T Consensus       186 ~-------------------------------------------------------------~~~~~~~~~~g~~~y~aP  204 (307)
T 2nru_A          186 F-------------------------------------------------------------AQTVMTSRIVGTTAYMAP  204 (307)
T ss_dssp             C-------------------------------------------------------------SSCEECSSCCSCGGGCCH
T ss_pred             c-------------------------------------------------------------cccccccccCCCcCcCCh
Confidence            0                                                             011112345799999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHH----HHHHHhcCC--------CCCCC----CChHHHHHHHHh
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE----TFRNVLMKT--------PEFVG----QRTALTDLIQRL  321 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~----~~~~i~~~~--------~~~~~----~~~~~~dli~~~  321 (412)
                      |++.+. ++.++|||||||++|+|++|.+||.+.....    ....+....        .....    .+..+.++|.+|
T Consensus       205 E~~~~~-~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c  283 (307)
T 2nru_A          205 EALRGE-ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQC  283 (307)
T ss_dssp             HHHTTE-ECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCC-CCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence            998764 7889999999999999999999998754322    111111111        11111    235789999999


Q ss_pred             hhhCCCccCCCCCChhhhhc
Q 042539          322 LEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~  341 (412)
                      |..||.+||    ++.++++
T Consensus       284 l~~~p~~Rp----s~~~l~~  299 (307)
T 2nru_A          284 LHEKKNKRP----DIKKVQQ  299 (307)
T ss_dssp             TCSSTTTSC----CHHHHHH
T ss_pred             cCCCcccCc----CHHHHHH
Confidence            999999999    6888875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.6e-44  Score=346.97  Aligned_cols=261  Identities=21%  Similarity=0.272  Sum_probs=208.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      ...+..++|++++.||+|+||.||+|+....+..+++.||||++....    ....+.+.+|+++++.++||||++++++
T Consensus        35 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~  110 (326)
T 2w1i_A           35 PTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST----EEHLRDFEREIEILKSLQHDNIVKYKGV  110 (326)
T ss_dssp             --CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC----SHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeeEEEE
Confidence            446778899999999999999999999765555567789999997642    2345667889999999999999999999


Q ss_pred             EEeCC--eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           92 LETDE--FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        92 ~~~~~--~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +...+  .+++||||+.|++|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+||
T Consensus       111 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Df  189 (326)
T 2w1i_A          111 CYSAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF  189 (326)
T ss_dssp             ECC----CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCC
T ss_pred             EEecCCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecC
Confidence            87543  7899999999999998887643 45999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+++........                                                            ........
T Consensus       190 g~~~~~~~~~~~------------------------------------------------------------~~~~~~~~  209 (326)
T 2w1i_A          190 GLTKVLPQDKEY------------------------------------------------------------YKVKEPGE  209 (326)
T ss_dssp             TTCEECCSSCSE------------------------------------------------------------EECSSCCS
T ss_pred             cchhhccccccc------------------------------------------------------------cccccCCC
Confidence            999765211000                                                            00112345


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH------------H---HHHHHhcC---CCCCCCCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK------------E---TFRNVLMK---TPEFVGQR  311 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~------------~---~~~~i~~~---~~~~~~~~  311 (412)
                      +|..|+|||++.+..++.++|||||||++|+|++|..||......            .   .+...+..   .+....++
T Consensus       210 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (326)
T 2w1i_A          210 SPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCP  289 (326)
T ss_dssp             CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCC
T ss_pred             CceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCccc
Confidence            788899999999988999999999999999999999998643111            0   11112211   22334578


Q ss_pred             hHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          312 TALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       312 ~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +++.+||.+||..||.+||    ++.++++
T Consensus       290 ~~l~~li~~cl~~dP~~Rp----s~~el~~  315 (326)
T 2w1i_A          290 DEIYMIMTECWNNNVNQRP----SFRDLAL  315 (326)
T ss_dssp             HHHHHHHHHHSCSSGGGSC----CHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCc----CHHHHHH
Confidence            9999999999999999999    5788774

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.7e-44  Score=345.47  Aligned_cols=250  Identities=22%  Similarity=0.330  Sum_probs=192.6

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc--CCCccceeeee
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL--SHPFLPKLLGS   91 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l--~hpnIv~l~~~   91 (412)
                      ....++|++++.||+|+||.||+|++.      ++.||||++.....       ....+|.+++..+  +||||++++++
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~-------~~~~~e~~~~~~~~~~h~~i~~~~~~   99 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYGEVWMGKWR------GEKVAVKVFFTTEE-------ASWFRETEIYQTVLMRHENILGFIAA   99 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTEEEEEEEET------TEEEEEEEEEGGGH-------HHHHHHHHHHTSTTCCCTTBCCEEEE
T ss_pred             cccccceEEEeEeecCCCeEEEEEEEC------CceEEEEEEecccc-------chhhhHHHHHHHHhhcCCCeeeEEEE
Confidence            444579999999999999999999875      34599999854321       1223355555554  89999999999


Q ss_pred             EEeC----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc--------CceeeeCCCCceEEc
Q 042539           92 LETD----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM--------GIAYRDLKPENILIR  159 (412)
Q Consensus        92 ~~~~----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~--------~iiHrDlKp~NiLl~  159 (412)
                      +...    ..+|+|||||.||+|..++...   .+++..+..++.|++.||.|||++        ||+||||||+|||++
T Consensus       100 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~  176 (337)
T 3mdy_A          100 DIKGTGSWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVK  176 (337)
T ss_dssp             EEESCGGGCEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEEC
T ss_pred             EccCCCCCCceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEEC
Confidence            9887    7899999999999999888653   499999999999999999999999        999999999999999


Q ss_pred             cCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcccccccc
Q 042539          160 QSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF  239 (412)
Q Consensus       160 ~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      .+|.+||+|||+++.+.....                                                           
T Consensus       177 ~~~~~kl~Dfg~a~~~~~~~~-----------------------------------------------------------  197 (337)
T 3mdy_A          177 KNGTCCIADLGLAVKFISDTN-----------------------------------------------------------  197 (337)
T ss_dssp             TTSCEEECCCTTCEECC---------------------------------------------------------------
T ss_pred             CCCCEEEEeCCCceeeccccc-----------------------------------------------------------
Confidence            999999999999976532111                                                           


Q ss_pred             CCCCCCcccccCCCCccceeecCCCCCch------hhHHHHHHHHHHHhhC----------CCCCCCCC----HHHHHHH
Q 042539          240 DNGERSNSFVGTEEYVSPEVVRGDGHEFA------VDWWALGILTYEMLYG----------TTPFRGKN----RKETFRN  299 (412)
Q Consensus       240 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~------~DiwSlGvil~ell~g----------~~Pf~~~~----~~~~~~~  299 (412)
                      .......+.+||+.|+|||++.+..++..      +|||||||++|||++|          ..||....    .......
T Consensus       198 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  277 (337)
T 3mdy_A          198 EVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMRE  277 (337)
T ss_dssp             -----CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHH
T ss_pred             cccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHH
Confidence            00111235689999999999988766544      9999999999999999          77776531    1222233


Q ss_pred             Hhc-C--CCCCC------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          300 VLM-K--TPEFV------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       300 i~~-~--~~~~~------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ... .  .+.++      .+++++.+||.+||..||.+||    ++.++++|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp----s~~ell~~  325 (337)
T 3mdy_A          278 IVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRL----TALRVKKT  325 (337)
T ss_dssp             HHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSC----CHHHHHHH
T ss_pred             HHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCC----CHHHHHHH
Confidence            222 1  12222      2346799999999999999999    68888863

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=3.5e-45  Score=382.09  Aligned_cols=261  Identities=24%  Similarity=0.365  Sum_probs=204.4

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ....++|++++.||+|+||+||+|.+..++.    .||||++....   .......+.+|+++++.++||||+++++++.
T Consensus        10 g~~~grY~i~~~LG~G~fG~Vyla~~~~tg~----~VAVKvi~~~~---~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~   82 (676)
T 3qa8_A           10 TQTCGPWEMKERLGTGGFGYVLRWIHQDTGE----QVAIKQCRQEL---SPKNRERWCLEIQIMKKLNHPNVVSAREVPD   82 (676)
T ss_dssp             -------CCCCCCCBCSSSBCCCCCCTTTTC----CEEECCCCSCC---CHHHHHHHHHHHHHHHHCCBTTBCCEEECCT
T ss_pred             CCCCCCeEEEEEEeeCCCeEEEEEEECCCCc----EEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCceeeeec
Confidence            4456999999999999999999988776544    49999997642   2334567788999999999999999999876


Q ss_pred             e------CCeEEEEeeccCCCCchhHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCC---
Q 042539           94 T------DEFLAWAVPYCPGGDLNVLRYKQN-DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGH---  163 (412)
Q Consensus        94 ~------~~~~~lv~e~~~gg~L~~~~~~~~-~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~---  163 (412)
                      .      ++..|+|||||.||+|..++.... ...+++..++.++.|++.||.|||++||+||||||+|||++.+|.   
T Consensus        83 ~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~  162 (676)
T 3qa8_A           83 GLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLI  162 (676)
T ss_dssp             TTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCE
T ss_pred             ccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCcee
Confidence            5      678899999999999998877543 235999999999999999999999999999999999999998775   


Q ss_pred             EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCC
Q 042539          164 VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGE  243 (412)
Q Consensus       164 vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      +||+|||+++...                                                                ...
T Consensus       163 vKL~DFG~a~~~~----------------------------------------------------------------~~~  178 (676)
T 3qa8_A          163 HKIIDLGYAKELD----------------------------------------------------------------QGE  178 (676)
T ss_dssp             EEECSCCCCCBTT----------------------------------------------------------------SCC
T ss_pred             EEEcccccccccc----------------------------------------------------------------ccc
Confidence            9999999997542                                                                112


Q ss_pred             CCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHH---------h-----cCCCCC--
Q 042539          244 RSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV---------L-----MKTPEF--  307 (412)
Q Consensus       244 ~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i---------~-----~~~~~~--  307 (412)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+..........         .     .+...+  
T Consensus       179 ~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~  258 (676)
T 3qa8_A          179 LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSS  258 (676)
T ss_dssp             CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCS
T ss_pred             ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhcccccccc
Confidence            223567999999999999999999999999999999999999999875433221100         0     000011  


Q ss_pred             ---------CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          308 ---------VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       308 ---------~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                               ...++.+.+||.+||..||++||    ++.++++||||+.++
T Consensus       259 ~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRP----Ta~elL~hp~F~~l~  305 (676)
T 3qa8_A          259 VLPTPNHLSGILAGKLERWLQCMLMWHQRQRG----TDPQNPNVGCFQALD  305 (676)
T ss_dssp             SSCCSCCCCGGGHHHHHHHHHHHSCSSCC-------CCTTCCCCTTHHHHH
T ss_pred             ccCCchhhchhhhHHHHHHHHHHccCCHhhCc----CHHHHhcCHHHHHHH
Confidence                     01347899999999999999999    689999999998643

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=2.9e-43  Score=341.88  Aligned_cols=247  Identities=22%  Similarity=0.282  Sum_probs=196.3

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhh--cCCCccceeeeeEEe
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSR--LSHPFLPKLLGSLET   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~--l~hpnIv~l~~~~~~   94 (412)
                      .++|++++.||+|+||+||+|++.      ++.||||++....       ...+.+|+++++.  ++||||+++++++..
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~-------~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~  107 (342)
T 1b6c_B           41 ARTIVLQESIGKGRFGEVWRGKWR------GEEVAVKIFSSRE-------ERSWFREAEIYQTVMLRHENILGFIAADNK  107 (342)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET------TEEEEEEEECGGG-------HHHHHHHHHHHHHSCCCCTTBCCEEEEEEC
T ss_pred             cccEEEEeeecCCCCcEEEEEEEc------CccEEEEEeCchh-------HHHHHHHHHHHHHhhcCCCcEEEEEeeecc
Confidence            479999999999999999999873      3459999996542       2345568888887  689999999999987


Q ss_pred             CC----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH--------HcCceeeeCCCCceEEccCC
Q 042539           95 DE----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH--------NMGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        95 ~~----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH--------~~~iiHrDlKp~NiLl~~~g  162 (412)
                      ..    .+|+||||+.||+|..++...   .+++.++..++.|++.||.|||        ++||+||||||+|||++.+|
T Consensus       108 ~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~  184 (342)
T 1b6c_B          108 DNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG  184 (342)
T ss_dssp             CCSSCCCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTS
T ss_pred             cCCccceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCC
Confidence            76    899999999999999888653   4999999999999999999999        89999999999999999999


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+++........                                                           ..
T Consensus       185 ~~kL~Dfg~~~~~~~~~~~-----------------------------------------------------------~~  205 (342)
T 1b6c_B          185 TCCIADLGLAVRHDSATDT-----------------------------------------------------------ID  205 (342)
T ss_dssp             CEEECCCTTCEEEETTTTE-----------------------------------------------------------EE
T ss_pred             CEEEEECCCceeccccccc-----------------------------------------------------------cc
Confidence            9999999999765321100                                                           00


Q ss_pred             CCCcccccCCCCccceeecCCC------CCchhhHHHHHHHHHHHhhC----------CCCCCCC-----CHHHHHHHHh
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDG------HEFAVDWWALGILTYEMLYG----------TTPFRGK-----NRKETFRNVL  301 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~------~~~~~DiwSlGvil~ell~g----------~~Pf~~~-----~~~~~~~~i~  301 (412)
                      ......+||+.|+|||++.+..      ++.++|||||||++|+|++|          ..||...     ........+.
T Consensus       206 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  285 (342)
T 1b6c_B          206 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC  285 (342)
T ss_dssp             ECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT
T ss_pred             cccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHH
Confidence            0123457999999999998762      34789999999999999999          7898764     2333444443


Q ss_pred             cCC--CCCCC------CChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          302 MKT--PEFVG------QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       302 ~~~--~~~~~------~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ...  +..+.      .++.+.+||.+||..||++||    ++.++++|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rp----s~~~i~~~  330 (342)
T 1b6c_B          286 EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARL----TALRIKKT  330 (342)
T ss_dssp             TSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSC----CHHHHHHH
T ss_pred             HHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCC----CHHHHHHH
Confidence            322  22221      125789999999999999999    68888864

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-44  Score=361.55  Aligned_cols=254  Identities=17%  Similarity=0.173  Sum_probs=194.7

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC-Ccccee------
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-PFLPKL------   88 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h-pnIv~l------   88 (412)
                      ...+|++.+.||+|+||+||+|++..++.    .||||++...... .....+.+.+|+.+++.+.| .|+..+      
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~----~vAvK~~~~~~~~-~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~  150 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGE----SFEVHVPYFTERP-PSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRF  150 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEECCSCC-----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCB
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCC----ceEEEEEecCCCc-cHHHHHHHHHHHHHHHhhccCCCHHHHHHhccc
Confidence            34568899999999999999999987554    4999999744322 22335567789999999986 322111      


Q ss_pred             ---------------eeeEEe-----CCeEEEEeeccCCCCchhHHH-----hhCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042539           89 ---------------LGSLET-----DEFLAWAVPYCPGGDLNVLRY-----KQNDRVFSPSVIRFYLSEIICAIEHLHN  143 (412)
Q Consensus        89 ---------------~~~~~~-----~~~~~lv~e~~~gg~L~~~~~-----~~~~~~l~~~~~~~~~~qi~~aL~yLH~  143 (412)
                                     ..++..     ...++++|+++ +++|.+++.     ......+++..+..++.||+.||+|||+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  229 (413)
T 3dzo_A          151 IFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH  229 (413)
T ss_dssp             CCCCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                           111111     22467778776 678887764     2223347788899999999999999999


Q ss_pred             cCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCcccccc
Q 042539          144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKK  223 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (412)
                      +||+||||||+|||++.+|.+||+|||+++....                                              
T Consensus       230 ~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~----------------------------------------------  263 (413)
T 3dzo_A          230 YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----------------------------------------------  263 (413)
T ss_dssp             TTEECSCCCGGGEEECTTCCEEECCGGGCEETTE----------------------------------------------
T ss_pred             CCcccCCcccceEEEecCCeEEEEeccceeecCC----------------------------------------------
Confidence            9999999999999999999999999999875421                                              


Q ss_pred             ccccCCCCccccccccCCCCCCcccccCCCCccceee----------cCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCH
Q 042539          224 TKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV----------RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR  293 (412)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l----------~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~  293 (412)
                                          ...+.+| +.|+|||++          .+..++.++|||||||++|||++|+.||.+.+.
T Consensus       264 --------------------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~  322 (413)
T 3dzo_A          264 --------------------SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAA  322 (413)
T ss_dssp             --------------------EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGG
T ss_pred             --------------------ccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcch
Confidence                                1234578 999999999          455578899999999999999999999988765


Q ss_pred             HHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          294 KETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      .+....+..   .....++++.+||.+||+.||.+||    ++.++++||||+.+.
T Consensus       323 ~~~~~~~~~---~~~~~~~~~~~li~~~l~~dP~~Rp----t~~~~l~~~~~~~~~  371 (413)
T 3dzo_A          323 LGGSEWIFR---SCKNIPQPVRALLEGFLRYPKEDRL----LPLQAMETPEYEQLR  371 (413)
T ss_dssp             GSCSGGGGS---SCCCCCHHHHHHHHHHTCSSGGGSC----CHHHHTTSHHHHHHH
T ss_pred             hhhHHHHHh---hcccCCHHHHHHHHHHccCChhhCc----CHHHHHhCHHHHHHH
Confidence            544443333   2246689999999999999999999    699999999998654

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.7e-42  Score=329.78  Aligned_cols=223  Identities=17%  Similarity=0.152  Sum_probs=183.2

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|++++.||+|+||.||+|++..++    +.||||++...... .....+.+.+|+.+++.++||||+++++++.+
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~----~~vavK~~~~~~~~-~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~  102 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTALD----RQVALTFVDPQGVL-PDDVLQETLSRTLRLSRIDKPGVARVLDVVHT  102 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETTTT----EEEEEEESCTTCCS-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecCCC----ceEEEEEECccccc-CHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE
Confidence            44477999999999999999999997644    45999999765432 23455677889999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++..|+|||||.|++|..++..   + ..+.++..++.||+.||+|||++||+||||||+|||++.+|.+||+++|    
T Consensus       103 ~~~~~lv~e~~~g~~L~~~l~~---~-~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~----  174 (286)
T 3uqc_A          103 RAGGLVVAEWIRGGSLQEVADT---S-PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA----  174 (286)
T ss_dssp             TTEEEEEEECCCEEEHHHHHTT---C-CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC----
T ss_pred             CCcEEEEEEecCCCCHHHHHhc---C-CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc----
Confidence            9999999999999999888742   2 4666788899999999999999999999999999999999999998654    


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                                                                                                     |
T Consensus       175 -------------------------------------------------------------------------------~  175 (286)
T 3uqc_A          175 -------------------------------------------------------------------------------T  175 (286)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           3


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHH---HHhcCCCC-----CCCCChHHHHHHHHhhhhCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR---NVLMKTPE-----FVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~---~i~~~~~~-----~~~~~~~~~dli~~~L~~dP  326 (412)
                      ++       .++.++|||||||++|+|++|+.||.+.+..+.+.   +.....+.     ....++++.+||.+||+.||
T Consensus       176 ~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP  248 (286)
T 3uqc_A          176 MP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDG  248 (286)
T ss_dssp             CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTS
T ss_pred             cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCC
Confidence            33       26889999999999999999999998865432110   11111111     24578899999999999999


Q ss_pred             CccCCCCCChhhhhc
Q 042539          327 VKRLGYLRGACEIKE  341 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~  341 (412)
                      .+| +    +.++++
T Consensus       249 ~~R-s----~~el~~  258 (286)
T 3uqc_A          249 GIR-S----ASTLLN  258 (286)
T ss_dssp             SCC-C----HHHHHH
T ss_pred             ccC-C----HHHHHH
Confidence            999 5    777775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.7e-43  Score=372.59  Aligned_cols=245  Identities=22%  Similarity=0.333  Sum_probs=195.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++..++|++++.||+|+||+||+|.+...   +++.||||++....   .......+.+|++++++++|||||++++++.
T Consensus        76 ~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~---~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  149 (681)
T 2pzi_A           76 DIVAGQYEVKGCIAHGGLGWIYLALDRNV---NGRPVVLKGLVHSG---DAEAQAMAMAERQFLAEVVHPSIVQIFNFVE  149 (681)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEEGGG---TTEEEEEEESCSSC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEE
T ss_pred             CEeCCceEEEEEEeeCCCeEEEEEEEcCC---CCcEEEEEEeCccC---CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEe
Confidence            34458999999999999999999998752   23459999986542   2344566778999999999999999999998


Q ss_pred             eCCe-----EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           94 TDEF-----LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        94 ~~~~-----~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      ..+.     .|+|||||.|++|..++..    .+++.+++.++.||+.||.|||++|||||||||+|||++.+ .+||+|
T Consensus       150 ~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~D  224 (681)
T 2pzi_A          150 HTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLID  224 (681)
T ss_dssp             EECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECC
T ss_pred             ecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEe
Confidence            7665     7999999999999876532    49999999999999999999999999999999999999875 999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++....                                                                   ....
T Consensus       225 FG~a~~~~~-------------------------------------------------------------------~~~~  237 (681)
T 2pzi_A          225 LGAVSRINS-------------------------------------------------------------------FGYL  237 (681)
T ss_dssp             CTTCEETTC-------------------------------------------------------------------CSCC
T ss_pred             cccchhccc-------------------------------------------------------------------CCcc
Confidence            999975421                                                                   1345


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhhCCCc
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +||+.|+|||++.+. ++.++|||||||++|+|++|.+||.+......     .........++.+.+||.+||..||.+
T Consensus       238 ~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~-----~~~~~~~~~~~~l~~li~~~l~~dP~~  311 (681)
T 2pzi_A          238 YGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGL-----PEDDPVLKTYDSYGRLLRRAIDPDPRQ  311 (681)
T ss_dssp             CCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSSC-----CTTCHHHHHCHHHHHHHHHHTCSSGGG
T ss_pred             CCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccccc-----cccccccccCHHHHHHHhhhccCChhh
Confidence            799999999999775 48899999999999999999999876321000     000001113467999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~  346 (412)
                      |++    ..+.+.|+|+.
T Consensus       312 R~~----~~~~l~~~l~~  325 (681)
T 2pzi_A          312 RFT----TAEEMSAQLTG  325 (681)
T ss_dssp             SCS----SHHHHHHHHHH
T ss_pred             CCC----HHHHHHHHHHH
Confidence            994    56777777764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=100.00  E-value=1.6e-37  Score=322.14  Aligned_cols=190  Identities=13%  Similarity=0.089  Sum_probs=132.6

Q ss_pred             eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh------hhhHHHHHHHHHHHHHHhhc-CCCccceeeeeEEeCCe
Q 042539           25 ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL------HAKHEAERRARWEIRVLSRL-SHPFLPKLLGSLETDEF   97 (412)
Q Consensus        25 ~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~------~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~   97 (412)
                      .++.|++|.+..++..-.+.    .||+|++.+...      ...+...+.+.+|+++|+++ .|+||+++++++++++.
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~----~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~  316 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGE----DYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQS  316 (569)
T ss_dssp             C-C--------CCEEEEECS----SEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSE
T ss_pred             ccccCCcccccccccccccc----eeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCE
Confidence            45667777776655554444    499999976532      12334456788999999999 59999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|||||||+|++|.+++...  +.+++.   .|+.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+....
T Consensus       317 ~yLVMEyv~G~~L~d~i~~~--~~l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~  391 (569)
T 4azs_A          317 GWLVMEKLPGRLLSDMLAAG--EEIDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ  391 (569)
T ss_dssp             EEEEEECCCSEEHHHHHHTT--CCCCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred             EEEEEecCCCCcHHHHHHhC--CCCCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence            99999999999999988654  347664   4789999999999999999999999999999999999999999975421


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ......+.+||+.||||
T Consensus       392 ---------------------------------------------------------------~~~~~~t~vGTp~YmAP  408 (569)
T 4azs_A          392 ---------------------------------------------------------------DCSWPTNLVQSFFVFVN  408 (569)
T ss_dssp             -----------------------------------------------------------------CCSHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------------------CCccccCceechhhccH
Confidence                                                                           12234567999999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTP  287 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~P  287 (412)
                      |++.+. +..++|+||+|+++|++.++..+
T Consensus       409 E~l~g~-~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          409 ELFAEN-KSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             HHC------------------CCCCTTHHH
T ss_pred             HHhCCC-CCCcccccccccchhhhccccch
Confidence            999875 56789999999999888766443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.96  E-value=8.6e-31  Score=270.05  Aligned_cols=195  Identities=14%  Similarity=0.064  Sum_probs=145.3

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh----hhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH----AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~----~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      ...+.||+|+||+||++....      ..+|+|........    ......+++.+|++++++++||||+++..++...+
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~------~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~  412 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLD------FDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD  412 (540)
T ss_dssp             ---------CCEEEEEEECSS------CEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT
T ss_pred             CCCCEEeeCCCEEEEEEEECC------CeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC
Confidence            446789999999999994432      33899986543322    12223566889999999999999996666666777


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ..|+|||||+|++|.+++..          +..++.|++.||+|||++||+||||||+|||++.  .+||+|||+|+...
T Consensus       413 ~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~  480 (540)
T 3en9_A          413 NKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISN  480 (540)
T ss_dssp             TTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECC
T ss_pred             ccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECC
Confidence            88999999999999877643          5689999999999999999999999999999998  99999999998764


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .......                                                        +......+++||+.|||
T Consensus       481 ~~~~~~~--------------------------------------------------------~~~~~~~~~~GT~~y~A  504 (540)
T 3en9_A          481 LDEDKAV--------------------------------------------------------DLIVFKKAVLSTHHEKF  504 (540)
T ss_dssp             CHHHHHH--------------------------------------------------------HHHHHHHHHHHHCGGGH
T ss_pred             Ccccccc--------------------------------------------------------chhhhhhhhcCCCCcCC
Confidence            3211000                                                        00001235789999999


Q ss_pred             ceeecC--CCCCchhhHHHHHHHHHHHhhCCCCCC
Q 042539          257 PEVVRG--DGHEFAVDWWALGILTYEMLYGTTPFR  289 (412)
Q Consensus       257 PE~l~~--~~~~~~~DiwSlGvil~ell~g~~Pf~  289 (412)
                      ||++.+  ..|+..+|+||..+-..+.+.++.+|.
T Consensus       505 PEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          505 DEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            999987  678888999999999888887776663

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.94  E-value=2e-27  Score=225.32  Aligned_cols=131  Identities=22%  Similarity=0.161  Sum_probs=105.0

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh-----H---------HHHHHHHHHHHHHhhcCCCccceee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK-----H---------EAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~-----~---------~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      +.||+|+||.||+|++ .+    ++.||||+++.......     .         .....+.+|+.+++.++  | ++++
T Consensus        96 ~~iG~G~~g~Vy~~~~-~~----g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~  167 (282)
T 1zar_A           96 KLMGEGKESAVFNCYS-EK----FGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVP  167 (282)
T ss_dssp             EEEEECSSEEEEEEEE-TT----TEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSC
T ss_pred             CEeccCCCceEEEEEe-CC----CCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcC
Confidence            9999999999999998 43    44599999965432110     0         23556788999999999  5 7777


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.. +..|+|||||.||+|.. +.      .  ..+..++.|++.||.|||++||+||||||+|||++ +|.+||+||
T Consensus       168 ~~~~~-~~~~lvmE~~~g~~L~~-l~------~--~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DF  236 (282)
T 1zar_A          168 KVYAW-EGNAVLMELIDAKELYR-VR------V--ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDF  236 (282)
T ss_dssp             CEEEE-ETTEEEEECCCCEEGGG-CC------C--SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCC
T ss_pred             eEEec-cceEEEEEecCCCcHHH-cc------h--hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEEC
Confidence            76654 45699999999999976 21      1  33557999999999999999999999999999999 999999999


Q ss_pred             cccc
Q 042539          170 DLSR  173 (412)
Q Consensus       170 Gla~  173 (412)
                      |+|+
T Consensus       237 G~a~  240 (282)
T 1zar_A          237 PQSV  240 (282)
T ss_dssp             TTCE
T ss_pred             CCCe
Confidence            9985

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.88  E-value=1.2e-22  Score=189.77  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=107.0

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCc--eEEeeecchhhhh--------------------hHHHHHHHHHHHHHH
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCP--FALKVVDKSTLHA--------------------KHEAERRARWEIRVL   77 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~--vAiK~i~~~~~~~--------------------~~~~~~~~~~Ei~il   77 (412)
                      |++.+.||+|+||.||+|.+..    +++.  ||||+++......                    .......+.+|+.+|
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~----~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l  124 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVF----DGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNL  124 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEE----TTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcC----CCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHH
Confidence            6789999999999999998854    3456  9999976542111                    112334677899999


Q ss_pred             hhcCCCcc--ceeeeeEEeCCeEEEEeeccCC-C----CchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH-HcCceee
Q 042539           78 SRLSHPFL--PKLLGSLETDEFLAWAVPYCPG-G----DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH-NMGIAYR  149 (412)
Q Consensus        78 ~~l~hpnI--v~l~~~~~~~~~~~lv~e~~~g-g----~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH-~~~iiHr  149 (412)
                      +.+.|++|  +.+++.    +..+||||||.+ |    +|..+...     .++..+..++.|++.||.||| ++||+||
T Consensus       125 ~~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~givHr  195 (258)
T 1zth_A          125 ERAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAELVHA  195 (258)
T ss_dssp             HHHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSCEECS
T ss_pred             HHHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCCEEeC
Confidence            99988754  444432    356899999942 3    44433211     345678899999999999999 9999999


Q ss_pred             eCCCCceEEccCCCEEEccccccchh
Q 042539          150 DLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       150 DlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ||||+|||++.  .++|+|||+|...
T Consensus       196 Dlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          196 DLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             SCSTTSEEESS--SEEECCCTTCEET
T ss_pred             CCCHHHEEEcC--cEEEEECcccccC
Confidence            99999999988  9999999999765

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.80  E-value=1.7e-19  Score=176.46  Aligned_cols=141  Identities=16%  Similarity=0.138  Sum_probs=100.4

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh------------------hhHHHHHHHHHHHHHHhhcC
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH------------------AKHEAERRARWEIRVLSRLS   81 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~------------------~~~~~~~~~~~Ei~il~~l~   81 (412)
                      |.+.+.||+|+||.||+|.+.     .++.||||+++.....                  ..........+|...|.++.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~-----~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~  171 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADE-----KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALY  171 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECT-----TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCEeeeCCceEEEEEECC-----CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999874     2445999998643211                  00111122345777777775


Q ss_pred             CCccceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC
Q 042539           82 HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS  161 (412)
Q Consensus        82 hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~  161 (412)
                      +.++. +...+... ..+|||||+.|+.|..+.        ....+..++.||+.+|.|||++|||||||||.|||++.+
T Consensus       172 ~~gv~-vp~p~~~~-~~~LVME~i~G~~L~~l~--------~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~d  241 (397)
T 4gyi_A          172 EEGFP-VPEPIAQS-RHTIVMSLVDALPMRQVS--------SVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREE  241 (397)
T ss_dssp             HTTCS-CCCEEEEE-TTEEEEECCSCEEGGGCC--------CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEE
T ss_pred             hcCCC-CCeeeecc-CceEEEEecCCccHhhhc--------ccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCC
Confidence            44332 22222222 237999999999885432        223456788999999999999999999999999999988


Q ss_pred             C----------CEEEccccccchh
Q 042539          162 G----------HVTLTDFDLSRNL  175 (412)
Q Consensus       162 g----------~vkL~DFGla~~~  175 (412)
                      |          .+.|+||+-+...
T Consensus       242 gd~~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          242 KDAEDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             ECSSCTTSEEEEEEECCCTTCEET
T ss_pred             CCcccccccccceEEEEeCCcccC
Confidence            7          3899999987543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.46  E-value=3.1e-13  Score=125.61  Aligned_cols=142  Identities=14%  Similarity=0.086  Sum_probs=111.6

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      .++.|++...+|.|+.+.||++...      +..+++|+........    ...+.+|+.+++.+. +..+.++++++.+
T Consensus        12 ~l~~~~~~~~~~g~s~~~v~~~~~~------~~~~vlK~~~~~~~~~----~~~~~~E~~~l~~l~~~~~vP~v~~~~~~   81 (263)
T 3tm0_A           12 LIEKYRCVKDTEGMSPAKVYKLVGE------NENLYLKMTDSRYKGT----TYDVEREKDMMLWLEGKLPVPKVLHFERH   81 (263)
T ss_dssp             HHTTSEEEECCSCCSSSEEEEEECS------SCEEEEEEECGGGTTS----TTCHHHHHHHHHHHTTTSCCCCEEEEEEE
T ss_pred             HhccceeEeeccCCCCCeEEEEECC------CCcEEEEeCCcccCCC----HHHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            3578999999999999999998643      2349999986532111    123566999999995 6778899999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-------------------------------  143 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-------------------------------  143 (412)
                      .+..|+|||+++|.+|....       .+......++.++..+|..||+                               
T Consensus        82 ~~~~~lv~e~i~G~~l~~~~-------~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (263)
T 3tm0_A           82 DGWSNLLMSEADGVLCSEEY-------EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVD  154 (263)
T ss_dssp             TTEEEEEEECCSSEEHHHHC-------CTTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCS
T ss_pred             CCceEEEEEecCCeehhhcc-------CCcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccc
Confidence            99999999999999886542       1223345678899999999999                               


Q ss_pred             ----------------------------cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          144 ----------------------------MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       144 ----------------------------~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                                                  .+++|+|++|.|||++.++.+.|+||+.+..
T Consensus       155 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          155 CENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             GGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                                        4589999999999998765567999998864

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.29  E-value=9.8e-12  Score=114.65  Aligned_cols=138  Identities=15%  Similarity=0.038  Sum_probs=99.6

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc--cceeeeeEE
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF--LPKLLGSLE   93 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn--Iv~l~~~~~   93 (412)
                      .+.+|.+....+.|+.+.||++... .+    ..+++|+.....       ...+.+|+.+++.+.+.+  +.+++++..
T Consensus        18 ~~~~~~~~~~~~gg~~~~v~~~~~~-~g----~~~vlK~~~~~~-------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~   85 (264)
T 1nd4_A           18 RLFGYDWAQQTIGCSDAAVFRLSAQ-GR----PVLFVKTDLSGA-------LNELQDEAARLSWLATTGVPCAAVLDVVT   85 (264)
T ss_dssp             TTTTCEEEECSCTTSSCEEEEEECT-TS----CCEEEEEECSCT-------TSCHHHHHHHHHHHHTTTCCBCCEEEEEE
T ss_pred             hcCCCceEecccCCCCceEEEEecC-CC----CeEEEEeCCccc-------chhhhHHHHHHHHHHhCCCCCCeEEEecc
Confidence            3456777655556777999998642 22    339999875431       123456889999886433  667999888


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC----------------------------
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG----------------------------  145 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~----------------------------  145 (412)
                      .++..++||||++|.+|.  ..  .   .+   ...++.++...|..||+..                            
T Consensus        86 ~~~~~~~v~e~i~G~~l~--~~--~---~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (264)
T 1nd4_A           86 EAGRDWLLLGEVPGQDLL--SS--H---LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQ  155 (264)
T ss_dssp             CSSCEEEEEECCSSEETT--TS--C---CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCT
T ss_pred             CCCCCEEEEEecCCcccC--cC--c---CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccc
Confidence            888899999999999884  11  1   12   1245677777788887643                            


Q ss_pred             ------------------------------ceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          146 ------------------------------IAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       146 ------------------------------iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                                                    ++|+|++|.|||++.++.+.|+|||.+...
T Consensus       156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          156 DDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             TSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             hhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence                                          999999999999987666779999998754

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.24  E-value=2.2e-11  Score=118.48  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=106.7

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeec--chhhhhhHHHHHHHHHHHHHHhhcC--CCccceeeeeEEeC
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVD--KSTLHAKHEAERRARWEIRVLSRLS--HPFLPKLLGSLETD   95 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~--~~~~~~~~~~~~~~~~Ei~il~~l~--hpnIv~l~~~~~~~   95 (412)
                      ..-++.|+.|.++.||++....      ..+++|+..  .....   .....+.+|+.+++.+.  +..+++++.++.+.
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~~~------~~~vlr~~~~p~~~~~---~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~  110 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVTPG------QTYVMRAKPGPKSKLL---PSAHAIEREYRVMDALAGTDVPVAKMYALCEDE  110 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEECSS------CEEEEECCCC-------------CHHHHHHHHHHHTTSSSCCCCEEEEECCT
T ss_pred             CceEEEcCCcccceEEEEEECC------ceEEEEeCCCCCCCCC---CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCC
Confidence            3457889999999999987542      238888875  33211   12335667999999997  45688999888776


Q ss_pred             ---CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 042539           96 ---EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-----------------------------  143 (412)
Q Consensus        96 ---~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-----------------------------  143 (412)
                         +..|+||||+.|..+....    ...+++.+...++.++..+|..||+                             
T Consensus       111 ~~~g~~~~vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (359)
T 3dxp_A          111 SVIGRAFYIMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQY  186 (359)
T ss_dssp             TTTSSCEEEEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHH
Confidence               4589999999998874311    1237788889999999999999997                             


Q ss_pred             -----------------------------cCceeeeCCCCceEEccCCC--EEEccccccchh
Q 042539          144 -----------------------------MGIAYRDLKPENILIRQSGH--VTLTDFDLSRNL  175 (412)
Q Consensus       144 -----------------------------~~iiHrDlKp~NiLl~~~g~--vkL~DFGla~~~  175 (412)
                                                   .++||+|+++.|||++.++.  +.|+||+.+...
T Consensus       187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          187 KLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             HHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             HhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                                         36999999999999998763  699999998754

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=99.16  E-value=4e-11  Score=113.97  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=99.2

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCc--cceeeeeEEeCC---
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPF--LPKLLGSLETDE---   96 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpn--Iv~l~~~~~~~~---   96 (412)
                      ++.++.|....||++.         ..+++|+-...      .....+.+|+.+|+.+. +..  +.+++......+   
T Consensus        25 i~~~~~G~~n~v~~v~---------~~~vlR~~~~~------~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~   89 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN---------RDFIFKFPKHS------RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQ   89 (304)
T ss_dssp             CCEEEECSSEEEEEST---------TSEEEEEESSH------HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCS
T ss_pred             eEecCCCCcceEEEEC---------CEEEEEecCCc------chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCC
Confidence            4569999999999753         12899986432      23455677999999884 332  455555544333   


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN---------------------------------  143 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~---------------------------------  143 (412)
                      ..|+||++++|..+......    .++..+...++.|+...|..||+                                 
T Consensus        90 ~~~~vm~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
T 3sg8_A           90 MSFAGFTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSREL  165 (304)
T ss_dssp             CSCEEEECCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTS
T ss_pred             cceEEEcccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccC
Confidence            35899999999988653321    27888888899999999999996                                 


Q ss_pred             -------------------------cCceeeeCCCCceEEcc--CCCEEEccccccchh
Q 042539          144 -------------------------MGIAYRDLKPENILIRQ--SGHVTLTDFDLSRNL  175 (412)
Q Consensus       144 -------------------------~~iiHrDlKp~NiLl~~--~g~vkL~DFGla~~~  175 (412)
                                               ..++|+|++|.||+++.  .+.+.|+||+.+...
T Consensus       166 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          166 KGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             CcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence                                     13799999999999998  456799999988654

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.71  E-value=3e-07  Score=87.32  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=94.8

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC---ccceeeeeEE-eCCe
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP---FLPKLLGSLE-TDEF   97 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp---nIv~l~~~~~-~~~~   97 (412)
                      -++.++.|....||++     +.    .+++|+-..      ......+.+|+.+|+.+.+.   .|.+.+.+.. ..+.
T Consensus        23 ~v~~l~~G~~n~v~~v-----g~----~~VlR~~~~------~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~   87 (306)
T 3tdw_A           23 SVESLGEGFRNYAILV-----NG----DWVFRFPKS------QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGN   87 (306)
T ss_dssp             CEEEEEECSSEEEEEE-----TT----TEEEEEESS------HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSC
T ss_pred             eeeecCCCcceeEEEE-----CC----EEEEEecCC------chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCc
Confidence            3566899999999987     22    289998532      12345677799999999742   3566666664 3456


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc---------------------------------
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM---------------------------------  144 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~---------------------------------  144 (412)
                      .|+||++++|..+......    .++..+...++.++...|..||+.                                 
T Consensus        88 ~~~v~e~i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~  163 (306)
T 3tdw_A           88 PFVGYRKVQGQILGEDGMA----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPL  163 (306)
T ss_dssp             EEEEEECCCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGG
T ss_pred             eEEEEeccCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccc
Confidence            7899999999888653211    145555566666666666666642                                 


Q ss_pred             ---------------------------CceeeeCCCCceEEcc---CCCE-EEccccccchh
Q 042539          145 ---------------------------GIAYRDLKPENILIRQ---SGHV-TLTDFDLSRNL  175 (412)
Q Consensus       145 ---------------------------~iiHrDlKp~NiLl~~---~g~v-kL~DFGla~~~  175 (412)
                                                 .++|+|++|.|||++.   ++.+ .|+||+.+...
T Consensus       164 l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          164 LDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             SCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             cchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence                                       3599999999999987   4565 89999988654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.61  E-value=7.5e-07  Score=82.48  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=94.4

Q ss_pred             CceeeeeeeccCc-eEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCC
Q 042539           19 NLKALKILGKGAM-GTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDE   96 (412)
Q Consensus        19 ~y~~~~~LG~G~f-g~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~   96 (412)
                      .|+.. .+..|.. +.||+......+    ..+.+|+-...       ....+.+|..+|+.+. +--|.+++.+..+.+
T Consensus        26 g~~~~-~~~~G~S~~~v~rl~~~~~~----~~~~lk~~~~~-------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~   93 (272)
T 4gkh_A           26 GYRWA-RDNVGQSGATIYRLYGKPNA----PELFLKHGKGS-------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPD   93 (272)
T ss_dssp             TCEEE-EEECSSSSCEEEEEECCTTC----CCEEEEEEETH-------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETT
T ss_pred             CCeEE-EccCCCcCCeEEEEEecCCC----eEEEEEECCCC-------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECC
Confidence            34433 3344544 479987665433    33899986433       2334566999998886 434788899999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHc--------------------------------
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNM--------------------------------  144 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~--------------------------------  144 (412)
                      ..|+|||+++|.++.......      ......+..++...|.-||+.                                
T Consensus        94 ~~~lvme~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (272)
T 4gkh_A           94 DAWLLTTAIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDF  167 (272)
T ss_dssp             EEEEEEECCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGC
T ss_pred             eEEEEEEeeCCccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhc
Confidence            999999999998876543321      122234455555556655531                                


Q ss_pred             --------------------------CceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          145 --------------------------GIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       145 --------------------------~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                                                .++|+|+.+.|||++..+.+-|+||+.+...
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g  224 (272)
T 4gkh_A          168 DDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA  224 (272)
T ss_dssp             CGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             cccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence                                      2799999999999988777789999998743

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.36  E-value=3.8e-06  Score=80.16  Aligned_cols=139  Identities=15%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC--CCccceeee------eEE
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS--HPFLPKLLG------SLE   93 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~--hpnIv~l~~------~~~   93 (412)
                      -++.|+.|..+.||++....     + .+++|+.....        ..+..|+.+++.|.  .-.|.+++.      +..
T Consensus        36 ~~~~l~gG~~n~~~~v~~~~-----~-~~vlk~~~~~~--------~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~  101 (346)
T 2q83_A           36 KIDVIQGNQMALVWKVHTDS-----G-AVCLKRIHRPE--------KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSK  101 (346)
T ss_dssp             EEEECC----CEEEEEEETT-----E-EEEEEEECSCH--------HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEE
T ss_pred             EeeeccccccCcEEEEEeCC-----C-CEEEEecCCCH--------HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEE
Confidence            34567777899999987532     1 28999986521        11223455555553  113444443      224


Q ss_pred             eCCeEEEEeeccCCCCchh--------------HHHhhCCC---C--------C-CHH--------H-------------
Q 042539           94 TDEFLAWAVPYCPGGDLNV--------------LRYKQNDR---V--------F-SPS--------V-------------  126 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~--------------~~~~~~~~---~--------l-~~~--------~-------------  126 (412)
                      ..+..++||+|++|..+..              .++.....   .        + ...        .             
T Consensus       102 ~~~~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (346)
T 2q83_A          102 HGSFLFVVYDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKE  181 (346)
T ss_dssp             ETTEEEEEEECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ECCEEEEEEEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            5678899999999975520              11111100   0        0 000        0             


Q ss_pred             ----------HHHHHHHHHHHHHHHHH-------------cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          127 ----------IRFYLSEIICAIEHLHN-------------MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       127 ----------~~~~~~qi~~aL~yLH~-------------~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                                +..+..++..++++|++             .++||+|+++.|||++.++.+.|+||+.+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          182 DPFSQLYLQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence                      11122234445666653             5799999999999998888999999998864

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.27  E-value=2.3e-06  Score=83.96  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhh-hhh--HHHHHHHHHHHHHHhhcCC--Cc-cceeeeeEEeC
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL-HAK--HEAERRARWEIRVLSRLSH--PF-LPKLLGSLETD   95 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~-~~~--~~~~~~~~~Ei~il~~l~h--pn-Iv~l~~~~~~~   95 (412)
                      -++.||.|..+.||++.....+    ..|++|......- ...  .....+..+|+++++.+..  +. +.+++.+  +.
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~----~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~  107 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHD----RALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DT  107 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC--------CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ET
T ss_pred             EEEECCCCceEEEEEEEECCCC----cEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cC
Confidence            4678999999999999654322    3499998643210 000  0112345568889888742  33 4456543  44


Q ss_pred             CeEEEEeeccCCC
Q 042539           96 EFLAWAVPYCPGG  108 (412)
Q Consensus        96 ~~~~lv~e~~~gg  108 (412)
                      +..++|||++.|.
T Consensus       108 ~~~~lvmE~l~g~  120 (397)
T 2olc_A          108 EMAVTVMEDLSHL  120 (397)
T ss_dssp             TTTEEEECCCTTS
T ss_pred             CccEEEEEeCCCc
Confidence            5568999999874

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.18  E-value=3.1e-06  Score=81.68  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=54.9

Q ss_pred             ceeeeee-eccCceEEEEEEEcC--CCCCCCCceEEeeecchh---hhhhHHHHHHHHHHHHHHhhcC-C--Cccceeee
Q 042539           20 LKALKIL-GKGAMGTVFLVHDRA--ADPTARCPFALKVVDKST---LHAKHEAERRARWEIRVLSRLS-H--PFLPKLLG   90 (412)
Q Consensus        20 y~~~~~L-G~G~fg~V~la~~~~--~~~~~~~~vAiK~i~~~~---~~~~~~~~~~~~~Ei~il~~l~-h--pnIv~l~~   90 (412)
                      ...++.| +.|....+|++....  .+...+..+++|+-....   ...    ...+.+|+.+++.+. +  -.+.+++.
T Consensus        22 v~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~----~~~~~~E~~~l~~L~~~~~vpvP~v~~   97 (357)
T 3ats_A           22 VTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFP----TYRLDHQFEVIRLVGELTDVPVPRVRW   97 (357)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSS----CCCHHHHHHHHHHHHHHCCSCCCCEEE
T ss_pred             eEEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCc----hhHHHHHHHHHHHHhhcCCCCCCcEEE
Confidence            3445778 889999999886530  000002338888765432   100    123445888888885 3  35778888


Q ss_pred             eEEeC---CeEEEEeeccCCCCch
Q 042539           91 SLETD---EFLAWAVPYCPGGDLN  111 (412)
Q Consensus        91 ~~~~~---~~~~lv~e~~~gg~L~  111 (412)
                      +..+.   ...|+|||+++|..+.
T Consensus        98 ~~~~~~~~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A           98 IETTGDVLGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             EECSSTTTSSCEEEEECCCCBCCC
T ss_pred             EccCCCccCCceEEEEecCCCChh
Confidence            77655   3568999999997654

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.82  E-value=0.00018  Score=68.24  Aligned_cols=77  Identities=18%  Similarity=0.155  Sum_probs=58.4

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC---CCccceeeeeEEeCCe
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS---HPFLPKLLGSLETDEF   97 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~---hpnIv~l~~~~~~~~~   97 (412)
                      .-++.|+.|....+|++...      +..+++|+-....       ...+.+|+..|+.|.   ...+++++.+....+.
T Consensus        39 ~~~~~l~gG~~n~~y~v~~~------~~~~vlK~~~~~~-------~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~  105 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLINDE------VQTVFVKINERSY-------RSMFRAEADQLALLAKTNSINVPLVYGIGNSQGH  105 (312)
T ss_dssp             CEEEEECCSSSSEEEEEESS------SCEEEEEEEEGGG-------HHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSE
T ss_pred             eeeEEeCCccceeeeEEEEC------CCeEEEEeCCccc-------HHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCc
Confidence            34678999999999998742      2238899875321       334566888888884   3568889988888889


Q ss_pred             EEEEeeccCCCCc
Q 042539           98 LAWAVPYCPGGDL  110 (412)
Q Consensus        98 ~~lv~e~~~gg~L  110 (412)
                      .++|||+++|..+
T Consensus       106 ~~lvme~l~G~~~  118 (312)
T 3jr1_A          106 SFLLLEALNKSKN  118 (312)
T ss_dssp             EEEEEECCCCCCC
T ss_pred             eEEEEEeccCCCC
Confidence            9999999999765

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.66  E-value=0.0002  Score=70.77  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=28.3

Q ss_pred             HcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       143 ~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      ...++|+|++|.|||++.++ ++|+||+.+..-
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            45799999999999998877 999999988764

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.66  E-value=0.00026  Score=66.45  Aligned_cols=138  Identities=16%  Similarity=0.121  Sum_probs=76.8

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCeE
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEFL   98 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~~   98 (412)
                      +.-++.|+.|....+|++      .    .+.+|+........     ....+|+.+++.+. +.-..+++...  .+.-
T Consensus        20 ~~~i~~l~gG~tN~~~~~------~----~~vlR~~~~~~~~~-----~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~   82 (301)
T 3dxq_A           20 YTGPLERLGGLTNLVFRA------G----DLCLRIPGKGTEEY-----INRANEAVAAREAAKAGVSPEVLHVD--PATG   82 (301)
T ss_dssp             CCSCEEEESCSSEEEEEE------T----TEEEEEECC----C-----CCHHHHHHHHHHHHHTTSSCCEEEEC--TTTC
T ss_pred             ccceeEcCCcccccccee------e----eEEEECCCCCccce-----eCHHHHHHHHHHHHHcCCCCceEEEE--CCCC
Confidence            333889999999999998      1    28999875432110     01123777777775 32225666543  3345


Q ss_pred             EEEeecc-CCCCchhHHHh----------------hC-CCCCC-----HHHHHHHHHH--------------HHHHHHHH
Q 042539           99 AWAVPYC-PGGDLNVLRYK----------------QN-DRVFS-----PSVIRFYLSE--------------IICAIEHL  141 (412)
Q Consensus        99 ~lv~e~~-~gg~L~~~~~~----------------~~-~~~l~-----~~~~~~~~~q--------------i~~aL~yL  141 (412)
                      ++++||+ .|..+......                +. ...+.     ...+..+..+              +...+..+
T Consensus        83 ~~v~e~i~~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  162 (301)
T 3dxq_A           83 VMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGV  162 (301)
T ss_dssp             CEEEECCTTCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHH
T ss_pred             EEEEeecCCCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Confidence            7899999 77665321000                00 00010     0111111111              11112222


Q ss_pred             H----H----cCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          142 H----N----MGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       142 H----~----~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      .    .    ..++|+|+.+.||+ ..+|.+.|+||..+..-
T Consensus       163 ~~~l~~~~~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g  203 (301)
T 3dxq_A          163 RSALAAHPLPLAACHCDPLCENFL-DTGERMWIVDWEYSGMN  203 (301)
T ss_dssp             HHHHHSSCCCCEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred             HHHHHhcCCCceeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence            1    1    13899999999999 56778999999988654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.60  E-value=0.00029  Score=66.63  Aligned_cols=144  Identities=21%  Similarity=0.229  Sum_probs=79.7

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CC-ccceeeee-----
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HP-FLPKLLGS-----   91 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hp-nIv~l~~~-----   91 (412)
                      +..-++.|+.|....||++.... +     .+++|+.....  .    ...+..|+.+++.|. +. .+.+++..     
T Consensus        23 ~~~~~~~i~~G~~n~~~~v~~~~-g-----~~vlk~~~~~~--~----~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~   90 (322)
T 2ppq_A           23 SLTSYKGIAEGVENSNFLLHTTK-D-----PLILTLYEKRV--E----KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGEL   90 (322)
T ss_dssp             CEEEEEEECC---EEEEEEEESS-C-----CEEEEEECC---------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCS
T ss_pred             cceEeeccCCCcccceEEEEeCC-c-----cEEEEEeCCCC--C----HHHHHHHHHHHHHHHHCCCCCCcccCCCCCCE
Confidence            34456778889999999987532 1     28999886521  1    112334677777664 21 13344321     


Q ss_pred             -EEeCCeEEEEeeccCCCCchh--------------HHHhhCCC---C----CCHHHHHH---------------HHHHH
Q 042539           92 -LETDEFLAWAVPYCPGGDLNV--------------LRYKQNDR---V----FSPSVIRF---------------YLSEI  134 (412)
Q Consensus        92 -~~~~~~~~lv~e~~~gg~L~~--------------~~~~~~~~---~----l~~~~~~~---------------~~~qi  134 (412)
                       ....+..+++|++++|..+..              .++.....   .    .....-..               +...+
T Consensus        91 ~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l  170 (322)
T 2ppq_A           91 LGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEI  170 (322)
T ss_dssp             CEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHH
T ss_pred             EEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence             233467799999999865421              01111100   0    00000000               00113


Q ss_pred             HHHHHHHHH-------cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          135 ICAIEHLHN-------MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       135 ~~aL~yLH~-------~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ...++.+++       .++||+|+.+.|||++.++.+.|+||+.+..
T Consensus       171 ~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          171 RPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             HHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            344555553       3699999999999998776668999998864

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.22  E-value=0.0011  Score=65.80  Aligned_cols=79  Identities=22%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             eeeeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCCe
Q 042539           22 ALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDEF   97 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~~   97 (412)
                      -++.|+.|-...||++.......   ..+..+.+|+.....  .    ...+.+|..+++.|. +.-..++++.+.+   
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~----~~~li~E~~~l~~L~~~g~~P~l~~~~~~---  147 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--T----ESHLVAESVIFTLLSERHLGPKLYGIFSG---  147 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--C----HHHHHHHHHHHHHHHHTTSSSCEEEEETT---
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--c----HHHHHHHHHHHHHHHhCCCCCcEEEEeCC---
Confidence            45678889999999997642110   013458899873311  1    012235888888885 4334677776643   


Q ss_pred             EEEEeeccCCCCc
Q 042539           98 LAWAVPYCPGGDL  110 (412)
Q Consensus        98 ~~lv~e~~~gg~L  110 (412)
                       .+|++|++|..+
T Consensus       148 -g~v~e~l~G~~l  159 (429)
T 1nw1_A          148 -GRLEEYIPSRPL  159 (429)
T ss_dssp             -EEEECCCCEEEC
T ss_pred             -CEEEEEeCCccc
Confidence             289999987554

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.17  E-value=0.0029  Score=58.80  Aligned_cols=79  Identities=15%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-C--CccceeeeeEEeC
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H--PFLPKLLGSLETD   95 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-h--pnIv~l~~~~~~~   95 (412)
                      ...-++.+|.|..+.||++...     .++.|.+|+-.......    ...+.+|+..|+.|. .  --+++++.+.   
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~-----DG~~~~vK~~~~~~~~~----~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---   83 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELA-----DGTPLFVKALPDDAPAL----DGLFRAEALGLDWLGRSFGSPVPQVAGWD---   83 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEET-----TSCEEEEEECCTTCCCC----TTHHHHHHHHHHHHTCSTTCCSCCEEEEE---
T ss_pred             CeEEEEecCCCCCeEEEEEEEC-----CCCEEEEEEeCCCCcch----hhHHHHHHHHHHHHHhhCCCCcceEEecc---
Confidence            4566788999999999998764     23448999764332211    123456899999885 2  2355555542   


Q ss_pred             CeEEEEeeccCCCCc
Q 042539           96 EFLAWAVPYCPGGDL  110 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L  110 (412)
                       .-++|||++.++..
T Consensus        84 -~~~lv~e~l~~~~~   97 (288)
T 3f7w_A           84 -DRTLAMEWVDERPP   97 (288)
T ss_dssp             -TTEEEEECCCCCCC
T ss_pred             -CceEEEEeecccCC
Confidence             23789999987654

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.15  E-value=0.0009  Score=63.61  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=27.8

Q ss_pred             cCceeeeCCCCceEEccC----CCEEEccccccchh
Q 042539          144 MGIAYRDLKPENILIRQS----GHVTLTDFDLSRNL  175 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~----g~vkL~DFGla~~~  175 (412)
                      ..++|+|+.+.|||++.+    +.+.|+||+.+..-
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            469999999999999874    67999999988754

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.14  E-value=0.0021  Score=60.79  Aligned_cols=140  Identities=18%  Similarity=0.152  Sum_probs=77.0

Q ss_pred             eeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-C-Cccceeeee-----EEeC
Q 042539           23 LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H-PFLPKLLGS-----LETD   95 (412)
Q Consensus        23 ~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-h-pnIv~l~~~-----~~~~   95 (412)
                      +..|+ |....||++....     +..+++|+...... .    ...+..|..+++.+. + -.+++++..     ...+
T Consensus        31 ~~~l~-g~~n~~y~v~~~~-----g~~~vlK~~~~~~~-~----~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~   99 (328)
T 1zyl_A           31 LTPLN-SYENRVYQFQDED-----RRRFVVKFYRPERW-T----ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQ   99 (328)
T ss_dssp             CEEEC-CSSSEEEEECCTT-----CCCEEEEEECTTTS-C----HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEET
T ss_pred             EEeec-CcccceEEEEcCC-----CCEEEEEEcCCCCC-C----HHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEEC
Confidence            34566 8888999875421     22389999853321 1    123344777777774 2 124445443     2235


Q ss_pred             CeEEEEeeccCCCCchh-----H---------HHhh-CC------CCCCHHH----------------------HHHHHH
Q 042539           96 EFLAWAVPYCPGGDLNV-----L---------RYKQ-ND------RVFSPSV----------------------IRFYLS  132 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~-----~---------~~~~-~~------~~l~~~~----------------------~~~~~~  132 (412)
                      +..++||++++|..+..     +         ++.. ..      ..++...                      ....+.
T Consensus       100 g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  179 (328)
T 1zyl_A          100 GFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATD  179 (328)
T ss_dssp             TEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHH
T ss_pred             CEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHH
Confidence            56788999998865421     0         1110 00      0111110                      011111


Q ss_pred             HHHHHHHHH----HHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          133 EIICAIEHL----HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       133 qi~~aL~yL----H~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +++..++-+    ....++|+|+++.|||++ + .+.|+||+.+...
T Consensus       180 ~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g  224 (328)
T 1zyl_A          180 ELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG  224 (328)
T ss_dssp             HHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred             HHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence            222222221    123589999999999998 4 8999999988643

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.05  E-value=0.0012  Score=64.26  Aligned_cols=148  Identities=17%  Similarity=0.188  Sum_probs=84.9

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCC---CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEE
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAA---DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLE   93 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~---~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~   93 (412)
                      +++. ++.|..|-...+|++.....   .......|.+|+.-.. . ..   .....+|.++++.|. +.-..++++++.
T Consensus        51 ~~l~-v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~-~~---~~~~~rE~~vl~~L~~~gv~P~ll~~~~  124 (379)
T 3feg_A           51 EELR-VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-L-QG---VDSLVLESVMFAILAERSLGPQLYGVFP  124 (379)
T ss_dssp             GGCC-CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-----CC---HHHHHHHHHHHHHHHHTTSSCCEEEEET
T ss_pred             CceE-EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-c-ch---HHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence            4454 45677788899999876321   0112345888875221 1 11   122336999998885 444577777765


Q ss_pred             eCCeEEEEeeccCCCCchhH-----------------HHhhC---CCCC--CHHHHHHHHHHHHH---------------
Q 042539           94 TDEFLAWAVPYCPGGDLNVL-----------------RYKQN---DRVF--SPSVIRFYLSEIIC---------------  136 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~-----------------~~~~~---~~~l--~~~~~~~~~~qi~~---------------  136 (412)
                      ++    +||||++|..|..-                 ++...   ....  -..++..|..++-.               
T Consensus       125 ~g----~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~  200 (379)
T 3feg_A          125 EG----RLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMY  200 (379)
T ss_dssp             TE----EEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHT
T ss_pred             Cc----cEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhH
Confidence            42    89999998665311                 01110   0011  13455666554422               


Q ss_pred             ----HHHHHHH--------cCceeeeCCCCceEEccC----CCEEEccccccchh
Q 042539          137 ----AIEHLHN--------MGIAYRDLKPENILIRQS----GHVTLTDFDLSRNL  175 (412)
Q Consensus       137 ----aL~yLH~--------~~iiHrDlKp~NiLl~~~----g~vkL~DFGla~~~  175 (412)
                          .++.|.+        ..++|+|+.+.|||++.+    +.+.|+||..|..-
T Consensus       201 ~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~  255 (379)
T 3feg_A          201 SLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYN  255 (379)
T ss_dssp             THHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcC
Confidence                2333332        259999999999999876    78999999988743

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.01  E-value=0.0029  Score=61.07  Aligned_cols=80  Identities=18%  Similarity=0.196  Sum_probs=44.4

Q ss_pred             eeeeeeccCceEEEEEEEcCCC----CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCC
Q 042539           22 ALKILGKGAMGTVFLVHDRAAD----PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDE   96 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~----~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~   96 (412)
                      -++.|+.|....+|++.....+    ......+.+|+........    . ...+|..+++.+. +.-+.++++.+  . 
T Consensus        37 ~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~----~-~~~~E~~~l~~L~~~g~~P~~~~~~--~-  108 (369)
T 3c5i_A           37 RVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDEL----Y-NTISEFEVYKTMSKYKIAPQLLNTF--N-  108 (369)
T ss_dssp             EEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGT----S-CHHHHHHHHHHHHHTTSSCCEEEEE--T-
T ss_pred             EEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccce----e-cHHHHHHHHHHHHhcCCCCceEEec--C-
Confidence            4567888888999998764310    0011348888764422110    0 1234888888885 33355777654  2 


Q ss_pred             eEEEEeeccCCCCc
Q 042539           97 FLAWAVPYCPGGDL  110 (412)
Q Consensus        97 ~~~lv~e~~~gg~L  110 (412)
                       -++||+|++|..+
T Consensus       109 -~~~v~e~i~G~~l  121 (369)
T 3c5i_A          109 -GGRIEEWLYGDPL  121 (369)
T ss_dssp             -TEEEEECCCSEEC
T ss_pred             -CcEEEEEecCCcC
Confidence             2689999998654

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.00  E-value=0.0074  Score=53.63  Aligned_cols=122  Identities=16%  Similarity=0.051  Sum_probs=78.4

Q ss_pred             CchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhhhccc
Q 042539          109 DLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN  187 (412)
Q Consensus       109 ~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~  187 (412)
                      +|.+.+...+ .+++|++++.++.|.+.+|.-+-. ..-..+=+.|..|++..+|+|.+.+ +.+.              
T Consensus        34 SL~eIL~~~~-~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~--------------   97 (229)
T 2yle_A           34 SLEEILRLYN-QPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP-AADD--------------   97 (229)
T ss_dssp             EHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC-C-----------------
T ss_pred             cHHHHHHHcC-CCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc-cccc--------------
Confidence            5666666654 579999999999999999877621 1222334457899999999987774 2110              


Q ss_pred             CCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCCCCCc
Q 042539          188 NNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEF  267 (412)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~  267 (412)
                                                                                   .....+.|||... ...+.
T Consensus        98 -------------------------------------------------------------~~~~~~~~pe~~~-~~~te  115 (229)
T 2yle_A           98 -------------------------------------------------------------AGEPPPVAGKLGY-SQCME  115 (229)
T ss_dssp             ----------------------------------------------------------------------CCSS-SSSCH
T ss_pred             -------------------------------------------------------------ccccCCCChhhcc-ccchH
Confidence                                                                         0122466777763 34467


Q ss_pred             hhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCChHHHHHHHHhhhh
Q 042539          268 AVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       268 ~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~dli~~~L~~  324 (412)
                      +.=|||||+++|.-+--..|=                ..-..+++++..||..|..-
T Consensus       116 ~~~IysLG~tLY~ALDygL~e----------------~eE~eLS~~LE~LL~~Mt~~  156 (229)
T 2yle_A          116 TEVIESLGIIIYKALDYGLKE----------------NEERELSPPLEQLIDHMANT  156 (229)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCT----------------TEEECCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhcCCCc----------------ccchhhCHHHHHHHHHHHhc
Confidence            889999999999888422211                11235688899999988765

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=96.97  E-value=0.0041  Score=59.45  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             cCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539          144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      .+++|+|+.+.||+++.++.+.|+||+.+...
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~  237 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA  237 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence            36999999999999998889999999988654

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.63  E-value=0.0068  Score=60.47  Aligned_cols=76  Identities=13%  Similarity=0.182  Sum_probs=46.9

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCC-ccceeeeeEEeCCeEEE
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP-FLPKLLGSLETDEFLAW  100 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hp-nIv~l~~~~~~~~~~~l  100 (412)
                      -++.|+.|-...+|++....    .+..|.+|+.......    ... -.+|..+++.|... -..++++++.  +  .+
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~----~~~~~vLRi~g~~~~~----~id-R~~E~~vl~~L~~~gl~P~ll~~~~--~--G~  178 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMS----KQAKYLIRLYGPKTDE----IIN-REREKKISCILYNKNIAKKIYVFFT--N--GR  178 (458)
T ss_dssp             EEEEECC--CEEEEEEEETT----TTEEEEEEEECC-CCS----CSC-HHHHHHHHHHHTTSSSBCCEEEEET--T--EE
T ss_pred             EEEEcCCCeEeEEEEEEECC----CCceEEEEECCCChhh----hcC-HHHHHHHHHHHHhcCCCCCEEEEeC--C--eE
Confidence            45678889999999987643    1234889987432110    000 13488899999743 3467777773  2  25


Q ss_pred             EeeccCCCCc
Q 042539          101 AVPYCPGGDL  110 (412)
Q Consensus       101 v~e~~~gg~L  110 (412)
                      ||||++|..|
T Consensus       179 v~e~I~G~~l  188 (458)
T 2qg7_A          179 IEEFMDGYAL  188 (458)
T ss_dssp             EEECCCSEEC
T ss_pred             EEEeeCCccC
Confidence            9999998555

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=95.57  E-value=0.064  Score=52.81  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=48.5

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeCC
Q 042539           21 KALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETDE   96 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~~   96 (412)
                      .-++.|..|-...+|++.......   .....|.+++.......    ... ..+|..+++.+. +.-..++++.+.   
T Consensus        73 ~~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~----~id-R~~E~~~l~~L~~~gi~P~l~~~~~---  144 (424)
T 3mes_A           73 IEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK----FYD-SKVELDVFRYLSNINIAPNIIADFP---  144 (424)
T ss_dssp             EEEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C----CCC-HHHHHHHHHHHHHTTSSCCEEEEET---
T ss_pred             eEEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch----hcC-HHHHHHHHHHHHhcCCCCCEEEEcC---
Confidence            345677778899999987642111   01345888886432110    011 124888888885 444566776443   


Q ss_pred             eEEEEeeccCCCCc
Q 042539           97 FLAWAVPYCPGGDL  110 (412)
Q Consensus        97 ~~~lv~e~~~gg~L  110 (412)
                       -++||+|++|..|
T Consensus       145 -~~~I~efI~G~~l  157 (424)
T 3mes_A          145 -EGRIEEFIDGEPL  157 (424)
T ss_dssp             -TEEEEECCCSEEC
T ss_pred             -CCEEEEEeCCccC
Confidence             2789999999764

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=94.73  E-value=0.17  Score=49.31  Aligned_cols=30  Identities=27%  Similarity=0.394  Sum_probs=25.8

Q ss_pred             ceeeeCCCCceEE------ccCCCEEEccccccchh
Q 042539          146 IAYRDLKPENILI------RQSGHVTLTDFDLSRNL  175 (412)
Q Consensus       146 iiHrDlKp~NiLl------~~~g~vkL~DFGla~~~  175 (412)
                      ++|+|+.+.|||+      +..+.+.++||..|..-
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n  281 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYN  281 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccCC
Confidence            6899999999999      44577999999998754

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=84.02  E-value=0.12  Score=51.52  Aligned_cols=64  Identities=8%  Similarity=-0.031  Sum_probs=17.9

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEE------eeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFAL------KVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAi------K~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      .+.+.||   ||.||++.....    ..+||+      |..+....  ..+....+.+|..+++.++|+|+++.+.+-.
T Consensus       145 ~l~~~lG---fG~v~~g~~~~~----~~~Vav~~~~~~K~~~~~~~--~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          145 PIYEHVG---YTTLNREPAYKK----HMPVLKETHDERDSTGQDGV--SEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             CSTTTSS---BCCC-------------CCBGGGC-------------------------------------CBCCCEEE
T ss_pred             cccccCC---chhhhccccccc----CCchhhhhccCccccccccc--cccccccccccccccccccccccCCCcceEE
Confidence            4556676   999999877542    234888      65543222  2233445677999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-56
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-55
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-47
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	7e-40
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-37
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-23
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-36
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	8e-36
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-35
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-34
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-29
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-34
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-34
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-22
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	7e-34
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-33
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-18
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-33
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-19
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-33
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-23
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-32
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-32
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-32
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	7e-27
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-32
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-32
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-08
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	5e-32
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	6e-32
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	7e-32
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	6e-21
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-31
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-31
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-31
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-23
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-31
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-28
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-31
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	5e-31
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	7e-31
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-12
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-30
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-30
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-30
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-13
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-30
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-25
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-30
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-11
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-30
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-12
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	3e-30
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-21
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-30
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-18
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	5e-30
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-30
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	9e-15
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-29
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-29
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-29
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	5e-29
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-18
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	8e-29
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-28
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-28
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-28
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-15
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-28
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-10
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-27
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-27
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-20
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	3e-27
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-24
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-27
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-11
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-26
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-25
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-26
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-26
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-17
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-25
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-25
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-24
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	8e-09
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-24
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-23
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-21
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-16

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  185 bits (470), Expect = 6e-56
 Identities = 93/358 (25%), Positives = 149/358 (41%), Gaps = 74/358 (20%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++    K+LGKG+ G VFL   +  +      FA+K + K  +    + E     +  +
Sbjct: 1   IEDFILHKMLGKGSFGKVFLAEFKKTN----QFFAIKALKKDVVLMDDDVECTMVEKRVL 56

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
                HPFL  +  + +T E L + + Y  GGDL  + + Q+   F  S   FY +EII 
Sbjct: 57  SLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDL--MYHIQSCHKFDLSRATFYAAEIIL 114

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            ++ LH+ GI YRDLK +NIL+ + GH+ + DF + +                      +
Sbjct: 115 GLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN--------------------M 154

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
             + K +    T    A PE   G K   S                              
Sbjct: 155 LGDAKTNTFCGTPDYIA-PEILLGQKYNHS------------------------------ 183

Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQ-RTALT 315
                       VDWW+ G+L YEML G +PF G++ +E F ++ M  P +         
Sbjct: 184 ------------VDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAK 231

Query: 316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD-LLTDVLRPPFIPSREENDLTE 372
           DL+ +L  ++P KRLG      +I++H  F+ + W+ L    + PPF P  +      
Sbjct: 232 DLLVKLFVREPEKRLGV---RGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFDCS 286

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  184 bits (467), Expect = 4e-55
 Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 78/366 (21%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAE--RRARW 72
           L +++    +I+G+G  G V+              +A+K +DK  +  K         R 
Sbjct: 1   LTMNDFSVHRIIGRGGFGEVYGCRKADTG----KMYAMKCLDKKRIKMKQGETLALNERI 56

Query: 73  EIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
            + ++S    PF+  +  +  T + L++ +    GGDL+   +     VFS + +RFY +
Sbjct: 57  MLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLH--YHLSQHGVFSEADMRFYAA 114

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           EII  +EH+HN  + YRDLKP NIL+ + GHV ++D  L+ +                  
Sbjct: 115 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF----------------- 157

Query: 193 VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                   K H  + T    A    + G+    SA                         
Sbjct: 158 -----SKKKPHASVGTHGYMAPEVLQKGVAYDSSA------------------------- 187

Query: 253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET---FRNVLMKTPEFVG 309
                            DW++LG + +++L G +PFR    K+     R  L    E   
Sbjct: 188 -----------------DWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD 230

Query: 310 QRT-ALTDLIQRLLEKDPVKRLGYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSRE 366
             +  L  L++ LL++D  +RLG L RGA E+KE  FF+ + W ++      PP IP R 
Sbjct: 231 SFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRG 290

Query: 367 ENDLTE 372
           E +  +
Sbjct: 291 EVNAAD 296

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (407), Expect = 5e-47
 Identities = 73/348 (20%), Positives = 113/348 (32%), Gaps = 85/348 (24%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            + +G+GA GTV+   D A         A++ ++      K         EI V+    +
Sbjct: 25  FEKIGQGASGTVYTAMDVATG----QEVAIRQMNLQQQPKKELIIN----EILVMRENKN 76

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P +   L S    + L   + Y  GG L  +  +          I     E + A+E LH
Sbjct: 77  PNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLH 133

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
           +  + +RD+K +NIL+   G V LTDF     +                      E  KR
Sbjct: 134 SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP--------------------EQSKR 173

Query: 203 HRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG 262
              + T +  A PE  T         +                                 
Sbjct: 174 STMVGTPYWMA-PEVVTRKAYGPKVDI--------------------------------- 199

Query: 263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK-TPEFVGQRT---ALTDLI 318
                    W+LGI+  EM+ G  P+  +N       +    TPE            D +
Sbjct: 200 ---------WSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFL 250

Query: 319 QRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSRE 366
            R L+ D  KR      A E+ +H F K  +       L P    ++E
Sbjct: 251 NRCLDMDVEKRG----SAKELLQHQFLKIAKP---LSSLTPLIAAAKE 291

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 7e-40
 Identities = 59/348 (16%), Positives = 111/348 (31%), Gaps = 54/348 (15%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L  D+ + +  LG G  G VF V  + +        A K++       K     +   E+
Sbjct: 3   LKDDDFEKISELGAGNGGVVFKVSHKPSG----LVMARKLIHLEI---KPAIRNQIIREL 55

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           +VL   + P++    G+  +D  ++  + +  GG L+ +  K         ++      +
Sbjct: 56  QVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAV 113

Query: 135 ICAIEHLHNM-GIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPV 193
           I  + +L     I +RD+KP NIL+   G + L DF +S  L                  
Sbjct: 114 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL------------------ 155

Query: 194 LPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSF-------DNGERSN 246
                +   +  + TR   + PE   G   +  + +        S          G    
Sbjct: 156 ----IDSMANSFVGTRSYMS-PERLQGTHYSVQSDIW-------SMGLSLVEMAVGRYPI 203

Query: 247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE 306
                +E       + +G                  YG          E    ++ + P 
Sbjct: 204 PPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPP 263

Query: 307 FVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD 351
            +          D + + L K+P +R        ++  H F K    +
Sbjct: 264 KLPSGVFSLEFQDFVNKCLIKNPAERA----DLKQLMVHAFIKRSDAE 307

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 1e-37
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L++ +  + LGKG  G V+L  ++ +        ALKV+ K+ L  K   E + R E+ +
Sbjct: 5   LEDFEIGRPLGKGKFGNVYLAREKQSK----FILALKVLFKAQLE-KAGVEHQLRREVEI 59

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
            S L HP + +L G       +   + Y P G +   R  Q    F       Y++E+  
Sbjct: 60  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTV--YRELQKLSKFDEQRTATYITELAN 117

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           A+ + H+  + +RD+KPEN+L+  +G + + DF  S + 
Sbjct: 118 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHA 156

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (239), Expect = 3e-23
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
                R  +  GT +Y+ PE++ G  H+  VD W+LG+L YE L G  PF     +ET++
Sbjct: 155 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 214

Query: 299 NVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
            +      F    T    DLI RLL+ +P +R        E+ EH +   
Sbjct: 215 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP----MLREVLEHPWITA 260

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 4e-36
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D  + +  LG GA G V+   ++          A KV+D        E       EI +L
Sbjct: 12  DFWEIIGELGDGAFGKVYKAQNKETS----VLAAAKVIDTK----SEEELEDYMVEIDIL 63

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +   HP + KLL +   +  L   + +C GG ++ +  +   R  + S I+    + + A
Sbjct: 64  ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDA 122

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
           + +LH+  I +RDLK  NIL    G + L DF +S    +
Sbjct: 123 LNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR 162

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 8e-19
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGD-----GHEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
              +R +SF+GT  +++PEVV  +      +++  D W+LGI   EM     P    N  
Sbjct: 162 RTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM 221

Query: 295 ETFRNVLMKTPEFVGQR----TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG 347
                +    P  + Q     +   D +++ LEK+   R        ++ +H F   
Sbjct: 222 RVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARW----TTSQLLQHPFVTV 274

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 8e-36
 Identities = 66/373 (17%), Positives = 114/373 (30%), Gaps = 113/373 (30%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           ++   + L  +G+G  G VF    R          ALK V     + K      A  EI+
Sbjct: 8   EVSKYEKLAKIGQGTFGEVFKARHRKTG----QKVALKKVLME--NEKEGFPITALREIK 61

Query: 76  VLSRLSHPFLPKLLGSLETDEFLAWAV--------PYCPGGDLNVLRYKQNDRVFSPSVI 127
           +L  L H  +  L+    T                 +C                F+ S I
Sbjct: 62  ILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAG--LLSNVLVKFTLSEI 119

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
           +  +  ++  + ++H   I +RD+K  N+LI + G + L DF L+R              
Sbjct: 120 KRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR-------------- 165

Query: 188 NNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNS 247
              F +   ++  +   R++T W                                     
Sbjct: 166 --AFSLAKNSQPNRYTNRVVTLW------------------------------------- 186

Query: 248 FVGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV------ 300
                 Y  PE++ G+  +   +D W  G +  EM   +   +G   +     +      
Sbjct: 187 ------YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGS 240

Query: 301 -------------LMKTPEFVGQRT--------------ALTDLIQRLLEKDPVKRLGYL 333
                        L +  E V  +                  DLI +LL  DP +R+   
Sbjct: 241 ITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRI--- 297

Query: 334 RGACEIKEHVFFK 346
             + +   H FF 
Sbjct: 298 -DSDDALNHDFFW 309

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  130 bits (327), Expect = 3e-35
 Identities = 59/340 (17%), Positives = 116/340 (34%), Gaps = 48/340 (14%)

Query: 16  DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIR 75
           + D+ + ++ LG+G    VF   +     T      +K++           +++ + EI+
Sbjct: 33  NQDDYQLVRKLGRGKYSEVFEAINI----TNNEKVVVKILKP-------VKKKKIKREIK 81

Query: 76  VLSRLS-HPFLPKLLGSLE--TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
           +L  L   P +  L   ++       A    +    D      KQ  +  +   IRFY+ 
Sbjct: 82  ILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDF-----KQLYQTLTDYDIRFYMY 136

Query: 133 EIICAIEHLHNMGIAYRDLKPENILI-RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
           EI+ A+++ H+MGI +RD+KP N++I  +   + L D+ L+                   
Sbjct: 137 EILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY---------------- 180

Query: 192 PVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT 251
                    + + R+ +R+               S  +  +     S    +        
Sbjct: 181 -----HPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD 235

Query: 252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQR 311
                  + +  G E   D+     +  +  +     R   ++       + +       
Sbjct: 236 NYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR---WERFVHSENQHLVS 292

Query: 312 TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD 351
               D + +LL  D   RL     A E  EH +F  V  D
Sbjct: 293 PEALDFLDKLLRYDHQSRL----TAREAMEHPYFYTVVKD 328

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 1e-34
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 7/156 (4%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ K  KILG+G+  TV L  + A        +A+K+++K  +  K         E  V+
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATS----REYAIKILEKRHII-KENKVPYVTRERDVM 62

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           SRL HPF  KL  + + DE L + + Y   G+L  L+Y +    F  +  RFY +EI+ A
Sbjct: 63  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSA 120

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           +E+LH  GI +RDLKPENIL+ +  H+ +TDF  ++
Sbjct: 121 LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK 156

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 1e-29
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 4/136 (2%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK 291
            ++         R+NSFVGT +YVSPE++       + D WALG + Y+++ G  PFR  
Sbjct: 154 TAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG 213

Query: 292 NRKETFRNVLMKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGY--LRGACEIKEHVFFKGV 348
           N    F+ ++    +F  +      DL+++LL  D  KRLG   + G   +K H FF+ V
Sbjct: 214 NEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV 273

Query: 349 RWDLLTDVLRPPFIPS 364
            W+ L     PP + +
Sbjct: 274 TWENLHQ-QTPPKLTA 288

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 4e-34
 Identities = 59/344 (17%), Positives = 107/344 (31%), Gaps = 95/344 (27%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWE 73
              +NL+  K+LG GA G V          T      A+K++ +    A          E
Sbjct: 34  FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEK---ADSSEREALMSE 90

Query: 74  IRVLSRL-SHPFLPKLLGSLETDEFLAWAVPYCPGGDL---------------------N 111
           ++++++L SH  +  LLG+      +     YC  GDL                      
Sbjct: 91  LKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQK 150

Query: 112 VLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL 171
            L  +++  V +   +  +  ++   +E L      +RDL   N+L+     V + DF L
Sbjct: 151 RLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGL 210

Query: 172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSP 231
           +R+++  + +  +                      L     A PE+      T  + V  
Sbjct: 211 ARDIMSDSNYVVR------------------GNARLPVKWMA-PESLFEGIYTIKSDVWS 251

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRG 290
                                                      GIL +E+   G  P+ G
Sbjct: 252 ------------------------------------------YGILLWEIFSLGVNPYPG 269

Query: 291 KNRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
                 F  ++     M  P +  +   +  ++Q     D  KR
Sbjct: 270 IPVDANFYKLIQNGFKMDQPFYATEE--IYIIMQSCWAFDSRKR 311

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  127 bits (320), Expect = 6e-34
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 12/172 (6%)

Query: 7   PQPQTTPSLD-LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHE 65
           PQP        LD+    + LG GA G V  V +RA        FA K V       K  
Sbjct: 14  PQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATG----NNFAAKFVMTPHESDKET 69

Query: 66  AERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPS 125
             +    EI+ +S L HP L  L  + E D  +     +  GG+L      ++++  S  
Sbjct: 70  VRK----EIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNK-MSED 124

Query: 126 VIRFYLSEIICAIEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLSRNL 175
               Y+ ++   + H+H     + DLKPENI+   ++S  + L DF L+ +L
Sbjct: 125 EAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL 176

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 95.9 bits (238), Expect = 1e-22
 Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETF 297
             D  +      GT E+ +PEV  G    +  D W++G+L+Y +L G +PF G+N  ET 
Sbjct: 175 HLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETL 234

Query: 298 RNVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL 352
           RNV                    D I++LL  DP  R+       +  EH +        
Sbjct: 235 RNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRM----TIHQALEHPWLTPGNAPG 290

Query: 353 LTDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSPSHRS 408
               +         ++             I+  ++    P P +      S   + 
Sbjct: 291 RDSQIPSSRYTKIRDS-------------IKTKYDAWPEPLPPLGRISNYSSLRKH 333

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 7e-34
 Identities = 62/319 (19%), Positives = 104/319 (32%), Gaps = 78/319 (24%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D  +L  LK LG G  G V     R      +   A+K++ + ++     +E     E 
Sbjct: 1   IDPKDLTFLKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGSM-----SEDEFIEEA 50

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           +V+  LSH  L +L G       +     Y   G L     +   R F    +     ++
Sbjct: 51  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDV 109

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
             A+E+L +    +RDL   N L+   G V ++DF LSR ++     E  S   +KFPV 
Sbjct: 110 CEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---EYTSSVGSKFPV- 165

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
                         RW    PE     K +  +                           
Sbjct: 166 --------------RWSP--PEVLMYSKFSSKS--------------------------- 182

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL----MKTPEFVGQ 310
                   D   F V  W +         G  P+      ET  ++     +  P    +
Sbjct: 183 --------DIWAFGVLMWEI------YSLGKMPYERFTNSETAEHIAQGLRLYRPHLASE 228

Query: 311 RTALTDLIQRLLEKDPVKR 329
           +  +  ++     +   +R
Sbjct: 229 K--VYTIMYSCWHEKADER 245

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 2e-33
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +++   ++ LG+GA G V L  +R  +       A+K+VD        +     + EI +
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNRVTE----EAVAVKIVDMKR---AVDCPENIKKEICI 56

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
              L+H  + K  G           + YC GG+  +    + D        + +  +++ 
Sbjct: 57  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE--LFDRIEPDIGMPEPDAQRFFHQLMA 114

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
            + +LH +GI +RD+KPEN+L+ +  ++ ++DF L+ 
Sbjct: 115 GVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLAT 151

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 3e-18
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRG 290
           ++   +  +     N   GT  YV+PE+++    H   VD W+ GI+   ML G  P+  
Sbjct: 149 LATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ 208

Query: 291 KNRKETFRNVLMKTPEFVGQRTALT----DLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            +      +   +   ++     +      L+ ++L ++P  R+       +IK+  ++ 
Sbjct: 209 PSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARI----TIPDIKKDRWYN 264

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  125 bits (314), Expect = 2e-33
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +G G+ G V+   D      +    A+K +  S     +E  +    E+R L +L H
Sbjct: 20  LREIGHGSFGAVYFARDV---RNSE-VVAIKKMSYSGKQ-SNEKWQDIIKEVRFLQKLRH 74

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
           P   +  G    +      + YC G   +    + + +      I       +  + +LH
Sbjct: 75  PNTIQYRGCYLREHTAWLVMEYCLGSASD--LLEVHKKPLQEVEIAAVTHGALQGLAYLH 132

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAF 181
           +  + +RD+K  NIL+ + G V L DF  +  +    +F
Sbjct: 133 SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSF 171

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.2 bits (213), Expect = 1e-19
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHE---FAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
             +NSFVGT  +++PEV+           VD W+LGI   E+     P    N      +
Sbjct: 166 APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 225

Query: 300 VLMKTPEFVGQRT---ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR-WDLLTD 355
           +       +          + +   L+K P  R      +  + +H F    R   ++ D
Sbjct: 226 IAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRP----TSEVLLKHRFVLRERPPTVIMD 281

Query: 356 VLRPPFIPSREENDLTEKAM 375
           +++      RE ++L  + M
Sbjct: 282 LIQRTKDAVRELDNLQYRKM 301

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  125 bits (315), Expect = 3e-33
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 12/176 (6%)

Query: 2   EATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
           +  P P      S+  D    L+ LG GA G V    ++A        F  K ++     
Sbjct: 14  KYVPQPVEVKQGSV-YDYYDILEELGSGAFGVVHRCVEKATG----RVFVAKFINTPYPL 68

Query: 62  AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV 121
            K+  +     EI ++++L HP L  L  + E    +   + +  GG+L   R    D  
Sbjct: 69  DKYTVKN----EISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELF-DRIAAEDYK 123

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR--QSGHVTLTDFDLSRNL 175
            S + +  Y+ +    ++H+H   I + D+KPENI+    ++  V + DF L+  L
Sbjct: 124 MSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL 179

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 98.6 bits (245), Expect = 1e-23
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 23/171 (13%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
            +  E       T E+ +PE+V  +   F  D WA+G+L Y +L G +PF G++  ET +
Sbjct: 179 LNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQ 238

Query: 299 NVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLL 353
           NV     EF             D I+ LL+K+P KRL       +  EH + KG   +L 
Sbjct: 239 NVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRL----TVHDALEHPWLKGDHSNL- 293

Query: 354 TDVLRPPFIPSREENDLTEKAMSGGGVDIREYFENLRAPPPSMPPSPLPSP 404
                   IPS   N + +K        I+E + +  AP P++      S 
Sbjct: 294 -----TSRIPSSRYNKIRQK--------IKEKYADWPAPQPAIGRIANFSS 331

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 1e-32
 Identities = 64/354 (18%), Positives = 107/354 (30%), Gaps = 102/354 (28%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL-HAKHEAERRARWEIRVLSRLS 81
           L  LG+G   TV+   D+  +       A+K +       AK    R A  EI++L  LS
Sbjct: 3   LDFLGEGQFATVYKARDKNTN----QIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS 58

Query: 82  HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHL 141
           HP +  LL +      ++    +        +  K N  V +PS I+ Y+   +  +E+L
Sbjct: 59  HPNIIGLLDAFGHKSNISLVFDFMETDLE--VIIKDNSLVLTPSHIKAYMLMTLQGLEYL 116

Query: 142 HNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPK 201
           H   I +RDLKP N+L+ ++G + L DF L+++                        N  
Sbjct: 117 HQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS--------------------PNRA 156

Query: 202 RHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVR 261
              +++TRW  A                                                
Sbjct: 157 YTHQVVTRWYRAPELLFGARMYGVGV---------------------------------- 182

Query: 262 GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQR---------- 311
            D                E+L       G +  +    +         ++          
Sbjct: 183 -DMWAVGCILA-------ELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDY 234

Query: 312 -------------------TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
                                L DLIQ L   +P  R+     A +  +  +F 
Sbjct: 235 VTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARI----TATQALKMKYFS 284

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 1e-32
 Identities = 62/358 (17%), Positives = 119/358 (33%), Gaps = 47/358 (13%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L  +G+GA G V   +D           A+K +            +R   EI++L R  H
Sbjct: 13  LSYIGEGAYGMVCSAYDNVNK----VRVAIKKISPF---EHQTYCQRTLREIKILLRFRH 65

Query: 83  PFLPKLLGSLETDEF----LAWAVPYCPGGD-LNVLRYKQNDRVFSPSVIRFYLSEIICA 137
             +  +   +           + V +  G D   +L+ +      S   I ++L +I+  
Sbjct: 66  ENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQH----LSNDHICYFLYQILRG 121

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVT 197
           ++++H+  + +RDLKP N+L+  +  + + DF L+R                        
Sbjct: 122 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH-----------------D 164

Query: 198 ENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP 257
                   + TRW  A          TKS  +  V        +      F G       
Sbjct: 165 HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRP--IFPGKHYLDQL 222

Query: 258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDL 317
             + G     + +     I+  +          KN+    R       + +       DL
Sbjct: 223 NHILGILGSPSQEDLN-CIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-------DL 274

Query: 318 IQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAM 375
           + ++L  +P KR+       +   H + +         +   PF    E +DL ++ +
Sbjct: 275 LDKMLTFNPHKRI----EVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKL 328

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  122 bits (307), Expect = 2e-32
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 7/159 (4%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L + + L+ LG G+ G V L+  R         +A+KV+ K  +  + +       E  +
Sbjct: 3   LQDFQILRTLGTGSFGRVHLIRSRHNG----RYYAMKVLKKEIV-VRLKQVEHTNDERLM 57

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           LS ++HPF+ ++ G+ +  + +   + Y  GG+L      +  + F   V +FY +E+  
Sbjct: 58  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGEL--FSLLRKSQRFPNPVAKFYAAEVCL 115

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           A+E+LH+  I YRDLKPENIL+ ++GH+ +TDF  ++ +
Sbjct: 116 ALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYV 154

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (267), Expect = 7e-27
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 242 GERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL 301
            + + +  GT +Y++PEVV    +  ++DWW+ GIL YEML G TPF   N  +T+  +L
Sbjct: 155 PDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKIL 214

Query: 302 MKTPEFVGQRT-ALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWD-LLTDVLR 358
                F       + DL+ RL+ +D  +RLG L+ G  ++K H +FK V W+ LL+  + 
Sbjct: 215 NAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIE 274

Query: 359 PPFIPSREEND 369
            P+ P  ++  
Sbjct: 275 TPYEPPIQQGQ 285

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-32
 Identities = 56/321 (17%), Positives = 94/321 (29%), Gaps = 66/321 (20%)

Query: 12  TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           T  +   +L+ L+ LG G+ G V      A         A+K +    L ++ EA     
Sbjct: 2   TCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTV-SVAVKCLKPDVL-SQPEAMDDFI 59

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E+  +  L H  L +L G + T   +       P G L     K     F    +  Y 
Sbjct: 60  REVNAMHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYA 117

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKF 191
            ++   + +L +    +RDL   N+L+     V + DF L R                  
Sbjct: 118 VQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMR------------------ 159

Query: 192 PVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT 251
                                ALP+N       +  +V       +S      S      
Sbjct: 160 ---------------------ALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFS------ 192

Query: 252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQR 311
                      D   F V  W +        YG  P+ G N  +    +  +        
Sbjct: 193 --------HASDTWMFGVTLWEM------FTYGQEPWIGLNGSQILHKIDKEGERLPRPE 238

Query: 312 T---ALTDLIQRLLEKDPVKR 329
                + +++ +     P  R
Sbjct: 239 DCPQDIYNVMVQCWAHKPEDR 259

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (303), Expect = 3e-32
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 3   ATPPPQPQTTP-SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH 61
           A  P  P      ++  ++     LG G  G V+    +          A+K + + T+ 
Sbjct: 1   AMDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYS----LTVAVKTLKEDTME 56

Query: 62  AKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRV 121
            +         E  V+  + HP L +LLG    +        +   G+L     + N + 
Sbjct: 57  VE-----EFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQE 111

Query: 122 FSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT 179
            S  V+ +  ++I  A+E+L      +RDL   N L+ ++  V + DF LSR +   T
Sbjct: 112 VSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 169

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 235 RQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNR 293
           R  + D            ++ +PE +  +      D WA G+L +E+  YG +P+ G + 
Sbjct: 163 RLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL 222

Query: 294 KETFRNVL----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
            + +  +     M+ PE   ++  + +L++   + +P  R
Sbjct: 223 SQVYELLEKDYRMERPEGCPEK--VYELMRACWQWNPSDR 260

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 5e-32
 Identities = 59/355 (16%), Positives = 120/355 (33%), Gaps = 46/355 (12%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           L+ +G GA G V    D           A+K + +          +RA  E+R+L  + H
Sbjct: 23  LQPVGSGAYGAVCSAVDGRTG----AKVAIKKLYRP--FQSELFAKRAYRELRLLKHMRH 76

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDL--NVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
             +  LL     DE L     +          L             I+F + +++  + +
Sbjct: 77  ENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRY 136

Query: 141 LHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENP 200
           +H  GI +RDLKP N+ + +   + + DF L+R                         + 
Sbjct: 137 IHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA-----------------------DS 173

Query: 201 KRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV 260
           +    ++TRW  A       ++ T++  +  V       +       F G++     + +
Sbjct: 174 EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGC--IMAEMITGKTLFKGSDHLDQLKEI 231

Query: 261 RGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTDLIQR 320
                    ++     L  +          +  K+ F ++L              +L+++
Sbjct: 232 MKVTGTPPAEFVQ--RLQSDEAKNYMKGLPELEKKDFASILTNASP------LAVNLLEK 283

Query: 321 LLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTEKAM 375
           +L  D  +R+     A E   H +F+ +        +   +  S ++ D T    
Sbjct: 284 MLVLDAEQRV----TAGEALAHPYFESLHDTEDEPQV-QKYDDSFDDVDRTLDEW 333

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 6e-32
 Identities = 72/389 (18%), Positives = 130/389 (33%), Gaps = 85/389 (21%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-H 82
           ++LG G  G V  + ++         FALK++             +AR E+ +  R S  
Sbjct: 18  QVLGLGINGKVLQIFNKRTQ----EKFALKMLQDC---------PKARREVELHWRASQC 64

Query: 83  PFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           P + +++   E      + L   +    GG+L      + D+ F+       +  I  AI
Sbjct: 65  PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 124

Query: 139 EHLHNMGIAYRDLKPENILI---RQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLP 195
           ++LH++ IA+RD+KPEN+L    R +  + LTDF  ++                      
Sbjct: 125 QYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-------------------- 164

Query: 196 VTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV 255
            T +        T +  A PE     K  KS                             
Sbjct: 165 -TSHNSLTTPCYTPYYVA-PEVLGPEKYDKSC---------------------------- 194

Query: 256 SPEVVRGDGHEFAVDWWAL--GILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTA 313
                  D     V  + L  G   +   +G     G   +          PE+      
Sbjct: 195 -------DMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE 247

Query: 314 LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREEN-DLTE 372
           +  LI+ LL+ +P +R+       E   H +         T +     +   +E  +  +
Sbjct: 248 VKMLIRNLLKTEPTQRM----TITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVK 303

Query: 373 KAMSGGGVDIREYFENLRAPPPSMPPSPL 401
           + M+     +R  +E ++        +PL
Sbjct: 304 EEMTSALATMRVDYEQIKIKKIEDASNPL 332

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  120 bits (301), Expect = 7e-32
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 12/164 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH-----EAERRARW 72
           +N +  +ILG+G    V     +         +A+K++D +   +       E       
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTC----KEYAVKIIDVTGGGSFSAEEVQELREATLK 58

Query: 73  EIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
           E+ +L ++S HP + +L  + ET+ F          G+L    Y       S    R  +
Sbjct: 59  EVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGEL--FDYLTEKVTLSEKETRKIM 116

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             ++  I  LH + I +RDLKPENIL+    ++ LTDF  S  L
Sbjct: 117 RALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL 160

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 89.7 bits (222), Expect = 6e-21
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 238 SFDNGERSNSFVGTEEYVSPEVVRG------DGHEFAVDWWALGILTYEMLYGTTPFRGK 291
             D GE+     GT  Y++PE++         G+   VD W+ G++ Y +L G+ PF  +
Sbjct: 159 QLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR 218

Query: 292 NRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
            +    R ++       +PE+      + DL+ R L   P KR      A E   H FF+
Sbjct: 219 KQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 274

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 1e-31
 Identities = 47/317 (14%), Positives = 90/317 (28%), Gaps = 74/317 (23%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  + LK ++ LG G  G V++ +            A+K + +        +      E 
Sbjct: 10  VPRETLKLVERLGAGQFGEVWMGYYNG-----HTKVAVKSLKQG-----SMSPDAFLAEA 59

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            ++ +L H  L +L     T E +     Y   G L       +    + + +    ++I
Sbjct: 60  NLMKQLQHQRLVRLYAV-VTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 118

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
              +  +      +RDL+  NIL+  +    + DF L+R                   ++
Sbjct: 119 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLAR-------------------LI 159

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
              E   R          A      G    KS                            
Sbjct: 160 EDNEYTAREGAKFPIKWTAPEAINYGTFTIKS---------------------------- 191

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT-- 312
                   D   F +    +      + +G  P+ G    E  +N+              
Sbjct: 192 --------DVWSFGILLTEI------VTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPE 237

Query: 313 ALTDLIQRLLEKDPVKR 329
            L  L++   ++ P  R
Sbjct: 238 ELYQLMRLCWKERPEDR 254

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-31
 Identities = 50/319 (15%), Positives = 98/319 (30%), Gaps = 73/319 (22%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  + ++  + +G+G  G V      + +  A    A+K     T         +   E 
Sbjct: 4   IQRERIELGRCIGEGQFGDVHQGIYMSPENPALA-VAIKTCKNCT---SDSVREKFLQEA 59

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
             + +  HP + KL+G + T+  +   +  C  G+L      +       + +  Y  ++
Sbjct: 60  LTMRQFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKYS-LDLASLILYAYQL 117

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
             A+ +L +    +RD+   N+L+  +  V L DF LSR                    +
Sbjct: 118 STALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR-------------------YM 158

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
             +   K  +  L     A          + S                            
Sbjct: 159 EDSTYYKASKGKLPIKWMAPESINFRRFTSAS---------------------------- 190

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL----MKTPEFVGQ 310
                   D   F V  W +      +++G  PF+G    +    +     +  P     
Sbjct: 191 --------DVWMFGVCMWEI------LMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPP 236

Query: 311 RTALTDLIQRLLEKDPVKR 329
              L  L+ +    DP +R
Sbjct: 237 --TLYSLMTKCWAYDPSRR 253

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 2e-31
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 4/163 (2%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           + ++N + LK+LG GA G VFLV   +   T +  +A+KV+ K+T+  K +     R E 
Sbjct: 21  VGIENFELLKVLGTGAYGKVFLVRKISGHDTGK-LYAMKVLKKATIVQKAKTTEHTRTER 79

Query: 75  RVLSRLSH-PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
           +VL  +   PFL  L  + +T+  L   + Y  GG+L    +      F+   ++ Y+ E
Sbjct: 80  QVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGEL--FTHLSQRERFTEHEVQIYVGE 137

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV 176
           I+ A+EHLH +GI YRD+K ENIL+  +GHV LTDF LS+  V
Sbjct: 138 IVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFV 180

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 2e-23
 Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 10/140 (7%)

Query: 241 NGERSNSFVGTEEYVSPEVVRGD--GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
             ER+  F GT EY++P++VRG   GH+ AVDWW+LG+L YE+L G +PF     K +  
Sbjct: 183 ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQA 242

Query: 299 NVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWD- 351
            +  +  +              DLIQRLL KDP KRLG     A EIKEH+FF+ + WD 
Sbjct: 243 EISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDD 302

Query: 352 LLTDVLRPPFIPS-REENDL 370
           L    +  PF P  R+E D+
Sbjct: 303 LAAKKVPAPFKPVIRDELDV 322

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 2e-31
 Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 7/161 (4%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           + +++   LK+LGKG  G V LV ++A        +A+K++ K  + AK E       E 
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKATG----RYYAMKILRKEVIIAKDEVAHTVT-ES 56

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           RVL    HPFL  L  + +T + L + + Y  GG+L    +   +RVF+    RFY +EI
Sbjct: 57  RVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEI 114

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           + A+E+LH+  + YRD+K EN+++ + GH+ +TDF L +  
Sbjct: 115 VSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG 155

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 7e-28
 Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 3/131 (2%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           +   +G    +F GT EY++PEV+  + +  AVDWW LG++ YEM+ G  PF  ++ +  
Sbjct: 154 EGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL 213

Query: 297 FRNVLMKTPEFVGQ-RTALTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWD-LL 353
           F  +LM+   F          L+  LL+KDP +RLG     A E+ EH FF  + W  ++
Sbjct: 214 FELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVV 273

Query: 354 TDVLRPPFIPS 364
              L PPF P 
Sbjct: 274 QKKLLPPFKPQ 284

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  118 bits (297), Expect = 3e-31
 Identities = 52/346 (15%), Positives = 93/346 (26%), Gaps = 77/346 (22%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            + +G+G+ G +F   +   +       A+K   +           + R E R    L+ 
Sbjct: 10  GRRIGEGSFGVIFEGTNLLNN----QQVAIKFEPR------RSDAPQLRDEYRTYKLLAG 59

Query: 83  PFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
                 +     +      V    G  L  L      R FS   +     +++  ++ +H
Sbjct: 60  CTGIPNVYYFGQEGLHNVLVIDLLGPSLEDL-LDLCGRKFSVKTVAMAAKQMLARVQSIH 118

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
              + YRD+KP+N LI +           + N++    F                     
Sbjct: 119 EKSLVYRDIKPDNFLIGR-------PNSKNANMIYVVDF--------------------- 150

Query: 203 HRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG 262
                            G+ K     V+      +         +  GT  Y+S     G
Sbjct: 151 -----------------GMVKFYRDPVT------KQHIPYREKKNLSGTARYMSINTHLG 187

Query: 263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET----FRNVLMKTPEFVGQRTA----- 313
                  D  ALG +    L G+ P++G           R    K    + +  A     
Sbjct: 188 REQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEE 247

Query: 314 LTDLIQRLLEKDPVKRLGY------LRGACEIKEHVFFKGVRWDLL 353
               +             Y           E       +   W+LL
Sbjct: 248 FYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWNLL 293

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 5e-31
 Identities = 62/340 (18%), Positives = 111/340 (32%), Gaps = 89/340 (26%)

Query: 9   PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAER 68
           P   P LD +++K   ++G+G  G V     +      R   A+K + +   +A  +  R
Sbjct: 1   PTIYPVLDWNDIKFQDVIGEGNFGQVLKARIK--KDGLRMDAAIKRMKE---YASKDDHR 55

Query: 69  RARWEIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYK----------- 116
               E+ VL +L  HP +  LLG+ E   +L  A+ Y P G+L     K           
Sbjct: 56  DFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFA 115

Query: 117 ---QNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
                    S   +  + +++   +++L      +RDL   NIL+ ++    + DF LSR
Sbjct: 116 IANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR 175

Query: 174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS 233
                                      K+    L     A+      +  T S       
Sbjct: 176 G---------------------QEVYVKKTMGRLPVRWMAIESLNYSVYTTNS------- 207

Query: 234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNR 293
                                        D   + V  W +      +  G TP+ G   
Sbjct: 208 -----------------------------DVWSYGVLLWEI------VSLGGTPYCGMTC 232

Query: 294 KETFRNVL----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
            E +  +     ++ P        + DL+++   + P +R
Sbjct: 233 AELYEKLPQGYRLEKPLNCDDE--VYDLMRQCWREKPYER 270

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (295), Expect = 7e-31
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 5/164 (3%)

Query: 12  TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
              +D+  +K  +++G G  G V   H +          A+K +         +  R   
Sbjct: 20  AKEIDISCVKIEQVIGAGEFGEVCSGHLKL-PGKREIFVAIKTLKSG---YTEKQRRDFL 75

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  ++ +  HP +  L G +     +     +   G L+    +QND  F+   +   L
Sbjct: 76  SEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSF-LRQNDGQFTVIQLVGML 134

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             I   +++L +M   +RDL   NIL+  +    ++DF LSR L
Sbjct: 135 RGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL 178

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (156), Expect = 4e-12
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 229 VSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTP 287
           +S       S      +        + +PE ++      A D W+ GI+ +E++ YG  P
Sbjct: 174 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 233

Query: 288 FRGKNRKETFRNVLM--KTPEFVGQRTALTDLIQRLLEKDPVKR 329
           +     ++    +    + P  +   +AL  L+    +KD   R
Sbjct: 234 YWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHR 277

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 1e-30
 Identities = 70/371 (18%), Positives = 132/371 (35%), Gaps = 53/371 (14%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           L   + LK +G GA G V   +D   D       A+K + +          +RA  E+ +
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLD----RNVAIKKLSRP--FQNQTHAKRAYRELVL 69

Query: 77  LSRLSHPFLPKLLG------SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
           +  ++H  +  LL       +LE  + +   +         V++ +          + + 
Sbjct: 70  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQME-----LDHERMSYL 124

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
           L +++C I+HLH+ GI +RDLKP NI+++    + + DF L+R                 
Sbjct: 125 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART---------------- 168

Query: 191 FPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG 250
                   +      ++TR+  A PE   G+   ++  +  V          +    F G
Sbjct: 169 -----AGTSFMMTPYVVTRYYRA-PEVILGMGYKENVDIWSVGCIMGEMVRHKI--LFPG 220

Query: 251 -TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG 309
                   +V+   G         L       +     + G    + F + L        
Sbjct: 221 RDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHN 280

Query: 310 QRTA--LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPP---FIPS 364
           +  A    DL+ ++L  DP KR+       +  +H +     W    +V  PP   +   
Sbjct: 281 KLKASQARDLLSKMLVIDPAKRI----SVDDALQHPYIN--VWYDPAEVEAPPPQIYDKQ 334

Query: 365 REENDLTEKAM 375
            +E + T +  
Sbjct: 335 LDEREHTIEEW 345

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  117 bits (293), Expect = 1e-30
 Identities = 45/351 (12%), Positives = 100/351 (28%), Gaps = 81/351 (23%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +  +  + +G G+ G ++L  D AA        A+K+    T H       +   E ++ 
Sbjct: 7   NRYRLGRKIGSGSFGDIYLGTDIAAG----EEVAIKLECVKTKH------PQLHIESKIY 56

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
             +        +     +      V    G  L    +    R FS   +     ++I  
Sbjct: 57  KMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLE-DLFNFCSRKFSLKTVLLLADQMISR 115

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGH---VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
           IE++H+    +RD+KP+N L+        V + DF L++        +            
Sbjct: 116 IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH----------- 164

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
                 +      T    +      G+++++                             
Sbjct: 165 --IPYRENKNLTGTARYAS-INTHLGIEQSRRD--------------------------- 194

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT-- 312
                          D  +LG +      G+ P++G       +     + + +      
Sbjct: 195 ---------------DLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV 239

Query: 313 -------ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK-GVRWDLLTD 355
                       +          +  Y     ++  ++F + G  +D + D
Sbjct: 240 LCKGYPSEFATYLNFCRSLRFDDKPDY-SYLRQLFRNLFHRQGFSYDYVFD 289

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 1e-30
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L++  LK L+ +GKG  G V L   R          A+K +            +    E 
Sbjct: 4   LNMKELKLLQTIGKGEFGDVMLGDYRGN------KVAVKCIKND------ATAQAFLAEA 51

Query: 75  RVLSRLSHPFLPKLLGS-LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
            V+++L H  L +LLG  +E    L     Y   G L      +   V     +  +  +
Sbjct: 52  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLD 111

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +  A+E+L      +RDL   N+L+ +     ++DF L++  
Sbjct: 112 VCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA 153

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 7e-13
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKE 295
            + +     ++     ++ +PE +R        D W+ GIL +E+  +G  P+     K+
Sbjct: 149 LTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD 208

Query: 296 TFRNVL----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               V     M  P+      A+ ++++     D   R
Sbjct: 209 VVPRVEKGYKMDAPDGCPP--AVYEVMKNCWHLDAAMR 244

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (295), Expect = 2e-30
 Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           +  LD    +K LG G+ G V LV  + +       +A+K++DK  +  K +       E
Sbjct: 37  TAQLDQFDRIKTLGTGSFGRVMLVKHKESG----NHYAMKILDKQKV-VKLKQIEHTLNE 91

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
            R+L  ++ PFL KL  S + +  L   + Y  GG++    + +    FS    RFY ++
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM--FSHLRRIGRFSEPHARFYAAQ 149

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR 173
           I+   E+LH++ + YRDLKPEN+LI Q G++ +TDF  ++
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 5e-25
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 3/133 (2%)

Query: 243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM 302
            R+ +  GT E ++PE++   G+  AVDWWALG+L YEM  G  PF      + +  ++ 
Sbjct: 193 GRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 252

Query: 303 KTPEFVGQRTA-LTDLIQRLLEKDPVKRLGYLR-GACEIKEHVFFKGVRWD-LLTDVLRP 359
               F    ++ L DL++ LL+ D  KR G L+ G  +IK H +F    W  +    +  
Sbjct: 253 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 312

Query: 360 PFIPSREENDLTE 372
           PFIP  +    T 
Sbjct: 313 PFIPKFKGPGDTS 325

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-30
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +D   L  ++ +G G  G V L +    D       A+K + +        +E     E 
Sbjct: 2   IDPSELTFVQEIGSGQFGLVHLGYWLNKDK-----VAIKTIREG-----AMSEEDFIEEA 51

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            V+ +LSHP L +L G       +     +   G L+     Q    F+   +     ++
Sbjct: 52  EVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGL-FAAETLLGMCLDV 110

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              + +L    + +RDL   N L+ ++  + ++DF ++R +
Sbjct: 111 CEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFV 151

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 1e-11
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFR 298
           D    S       ++ SPEV     +    D W+ G+L +E+   G  P+  ++  E   
Sbjct: 154 DQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVE 213

Query: 299 NVL----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           ++     +  P        +  ++    ++ P  R
Sbjct: 214 DISTGFRLYKPRLASTH--VYQIMNHCWKERPEDR 246

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 2e-30
 Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 8/162 (4%)

Query: 15  LDLDNLKALKI-LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           L  DNL    I LG G  G+V     R      +   A+KV+ + T   +         E
Sbjct: 5   LKRDNLLIADIELGCGNFGSVRQGVYRMRKK--QIDVAIKVLKQGT---EKADTEEMMRE 59

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSE 133
            +++ +L +P++ +L+G  + +  +   +    GG L+     + +     S +   L +
Sbjct: 60  AQIMHQLDNPYIVRLIGVCQAEALM-LVMEMAGGGPLHKFLVGKREE-IPVSNVAELLHQ 117

Query: 134 IICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
           +   +++L      +RDL   N+L+    +  ++DF LS+ L
Sbjct: 118 VSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL 159

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFR 298
                 ++     ++ +PE +         D W+ G+  +E L YG  P++     E   
Sbjct: 164 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMA 223

Query: 299 NVL----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
            +     M+ P        L  L+          R
Sbjct: 224 FIEQGKRMECPPECPP--ELYALMSDCWIYKWEDR 256

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-30
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 12/160 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +     + LG+G  G V    + ++  T    +  K V       K   +   + EI +L
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKT----YMAKFVKV-----KGTDQVLVKKEISIL 55

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +   H  +  L  S E+ E L     +  G D+   R   +    +   I  Y+ ++  A
Sbjct: 56  NIARHRNILHLHESFESMEELVMIFEFISGLDIFE-RINTSAFELNEREIVSYVHQVCEA 114

Query: 138 IEHLHNMGIAYRDLKPENILI--RQSGHVTLTDFDLSRNL 175
           ++ LH+  I + D++PENI+   R+S  + + +F  +R L
Sbjct: 115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL 154

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 2e-21
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 26/179 (14%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFR 298
              G+         EY +PEV + D    A D W+LG L Y +L G  PF  +  ++   
Sbjct: 154 LKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIE 213

Query: 299 NVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG----VR 349
           N++     F  +          D + RLL K+   R+     A E  +H + K     V 
Sbjct: 214 NIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRM----TASEALQHPWLKQKIERVS 269

Query: 350 WDLLTDVLRPPFIPSREENDLT----EKAMSGGGVDIREYFENLRAPP-PSMPPSPLPS 403
             ++  +    +  +  + DL        +S GG         +R+    S+    + S
Sbjct: 270 TKVIRTLKHRRYYHTLIKKDLNMVVSAARISCGG--------AIRSQKGVSVAKVKVAS 320

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 3e-30
 Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 15/175 (8%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           ++ + L  +G G+ G    +  ++           K +D  ++      ++    E+ +L
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDG----KILVWKELDYGSM--TEAEKQMLVSEVNLL 57

Query: 78  SRLSHPFLPKLLGSL--ETDEFLAWAVPYCPGGDLN--VLRYKQNDRVFSPSVIRFYLSE 133
             L HP + +    +   T+  L   + YC GGDL   + +  +  +      +   +++
Sbjct: 58  RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQ 117

Query: 134 IICAIEHLHNMG-----IAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK 183
           +  A++  H        + +RDLKP N+ +    +V L DF L+R L   T+F K
Sbjct: 118 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAK 172

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 1e-18
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 240 DNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRN 299
            +   + +FVGT  Y+SPE +    +    D W+LG L YE+     PF   ++KE    
Sbjct: 166 HDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGK 225

Query: 300 VLMKTPEFVGQR--TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVF 344
           +       +  R    L ++I R+L      R        EI E+  
Sbjct: 226 IREGKFRRIPYRYSDELNEIITRMLNLKDYHRP----SVEEILENPL 268

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  115 bits (288), Expect = 5e-30
 Identities = 60/330 (18%), Positives = 110/330 (33%), Gaps = 45/330 (13%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++    L+ +G+G  G V+   +   +      FALK +                 EI +
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET-----FALKKIRLE--KEDEGIPSTTIREISI 53

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L H  + KL   + T + L     +       +L   +          + +L +++ 
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLN 111

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            I + H+  + +RDLKP+N+LI + G + + DF L+R                       
Sbjct: 112 GIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI------------------- 152

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
               K    I+T W  A        K + +  +  V        NG     F G  E   
Sbjct: 153 -PVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTP--LFPGVSEADQ 209

Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTD 316
              +           W       +     T +     +   + +       +       D
Sbjct: 210 LMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGL---DESGI-------D 259

Query: 317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           L+ ++L+ DP +R+     A +  EH +FK
Sbjct: 260 LLSKMLKLDPNQRI----TAKQALEHAYFK 285

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 5e-30
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +    +   + +G G+ GTV+               A+K+++ +      +  +  + E+
Sbjct: 5   IPDGQITVGQRIGSGSFGTVYKGKWHG-------DVAVKMLNVT--APTPQQLQAFKNEV 55

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            VL +  H  +   +G   T   LA    +C G  L    +    + F    +     + 
Sbjct: 56  GVLRKTRHVNILLFMGY-STAPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQT 113

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              +++LH   I +RDLK  NI + +   V + DF L+   
Sbjct: 114 AQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVK 154

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (176), Expect = 9e-15
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRG---DGHEFAVDWWALGILTYEMLYGTTPF 288
           ++  +  +    +     G+  +++PEV+R    + + F  D +A GI+ YE++ G  P+
Sbjct: 150 LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPY 209

Query: 289 RGKNRKETFRNVLMKTPEFVGQRT-------ALTDLIQRLLEKDPVKR 329
              N ++    ++ +                A+  L+   L+K   +R
Sbjct: 210 SNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDER 257

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-29
 Identities = 71/384 (18%), Positives = 127/384 (33%), Gaps = 63/384 (16%)

Query: 1   MEATPPPQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTL 60
           + ATP   P     +   + K   ++G G+ G V+      +        A+K V +   
Sbjct: 6   VVATPGQGPDRPQEVSYTDTK---VIGNGSFGVVYQAKLCDSG----ELVAIKKVLQD-- 56

Query: 61  HAKHEAERRARWEIRVLSRLSHPFLPKLL------GSLETDEFLAWAVPYCPGGDLNVLR 114
                 +R    E++++ +L H  + +L       G  + + +L   + Y P     V R
Sbjct: 57  ------KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 110

Query: 115 -YKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT-LTDFDLS 172
            Y +  +      ++ Y+ ++  ++ ++H+ GI +RD+KP+N+L+     V  L DF  +
Sbjct: 111 HYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 170

Query: 173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV 232
           + LV+                            I +R+  A          T S  V   
Sbjct: 171 KQLVRGE---------------------PNVSYICSRYYRAPELIFGATDYTSSIDVWSA 209

Query: 233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN 292
                    G+    F G               +       LG  T E +    P   + 
Sbjct: 210 GCVLAELLLGQP--IFPGDSGV----------DQLVEIIKVLGTPTREQIREMNPNYTEF 257

Query: 293 RKETFRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDL 352
           +    +                  L  RLLE  P  RL       E   H FF  +R   
Sbjct: 258 KFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL----TPLEACAHSFFDELRDP- 312

Query: 353 LTDVLRPPFIPSREENDLTEKAMS 376
             +V  P    +    + T + +S
Sbjct: 313 --NVKLPNGRDTPALFNFTTQELS 334

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 4e-29
 Identities = 68/334 (20%), Positives = 114/334 (34%), Gaps = 45/334 (13%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           ++N + ++ +G+G  G V+   ++          ALK +   T          A  EI +
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTG----EVVALKKIRLDTE--TEGVPSTAIREISL 54

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L+HP + KLL  + T+  L + V      DL               +I+ YL +++ 
Sbjct: 55  LKELNHPNIVKLLDVIHTENKL-YLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQ 113

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            +   H+  + +RDLKP+N+LI   G + L DF L+R                       
Sbjct: 114 GLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF--------------------G 153

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY-V 255
                    ++T W  A          + +  +  +               F G  E   
Sbjct: 154 VPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA--LFPGDSEIDQ 211

Query: 256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALT 315
              + R  G    V W          +    P   K  ++ F  V+    E         
Sbjct: 212 LFRIFRTLGTPDEVVWPG-----VTSMPDYKPSFPKWARQDFSKVVPPLDE------DGR 260

Query: 316 DLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
            L+ ++L  DP KR+     A     H FF+ V 
Sbjct: 261 SLLSQMLHYDPNKRI----SAKAALAHPFFQDVT 290

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-29
 Identities = 64/330 (19%), Positives = 114/330 (34%), Gaps = 43/330 (13%)

Query: 17  LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +   + L+ +G+G  GTVF   +R          ALK V              A  EI +
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETH----EIVALKRVRLD--DDDEGVPSSALREICL 54

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIIC 136
           L  L H  + +L   L +D+ L     +C         +   +    P +++ +L +++ 
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKK--YFDSCNGDLDPEIVKSFLFQLLK 112

Query: 137 AIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPV 196
            +   H+  + +RDLKP+N+LI ++G + L +F L+R                       
Sbjct: 113 GLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAF--------------------G 152

Query: 197 TENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS 256
                    ++T W             + S  +           N  R        +   
Sbjct: 153 IPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQL 212

Query: 257 PEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTALTD 316
             + R  G      W ++  L         P+       +  NV+ K            D
Sbjct: 213 KRIFRLLGTPTEEQWPSMTKLPDYK-----PYPMYPATTSLVNVVPKLNA------TGRD 261

Query: 317 LIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           L+Q LL+ +PV+R+     A E  +H +F 
Sbjct: 262 LLQNLLKCNPVQRI----SAEEALQHPYFS 287

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  112 bits (280), Expect = 5e-29
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 11/168 (6%)

Query: 12  TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           TPS   D  +  +ILG G M  V L  D           A+KV+             R R
Sbjct: 1   TPSHLSDRYELGEILGFGGMSEVHLARDLRLH----RDVAVKVLRADLAR-DPSFYLRFR 55

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAV----PYCPGGDLNVLRYKQNDRVFSPSVI 127
            E +  + L+HP +  +  + E +            Y  G  L        +   +P   
Sbjct: 56  REAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTL--RDIVHTEGPMTPKRA 113

Query: 128 RFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              +++   A+   H  GI +RD+KP NI+I  +  V + DF ++R +
Sbjct: 114 IEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAI 161

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 83.3 bits (205), Expect = 1e-18
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKE 295
             S ++  ++ + +GT +Y+SPE  RGD  +   D ++LG + YE+L G  PF G +   
Sbjct: 162 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS 221

Query: 296 TFRNVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKR 329
                + + P     R       L  ++ + L K+P  R
Sbjct: 222 VAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 260

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 8e-29
 Identities = 66/361 (18%), Positives = 127/361 (35%), Gaps = 52/361 (14%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           +  + L  +G GA G+V    D           A+K + +      H   +R   E+R+L
Sbjct: 18  ERYQNLSPVGSGAYGSVCAAFDTKTG----LRVAVKKLSRPFQSIIHA--KRTYRELRLL 71

Query: 78  SRLSHPFLPKLLGSLETDEFLA-----WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLS 132
             + H  +  LL        L      + V +  G DLN +   Q     +   ++F + 
Sbjct: 72  KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIY 128

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           +I+  ++++H+  I +RDLKP N+ + +   + + DF L+R+                  
Sbjct: 129 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT----------------- 171

Query: 193 VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                 + +    + TRW  A       +   ++  +   S      +       F GT+
Sbjct: 172 ------DDEMTGYVATRWYRAPEIMLNWMHYNQTVDI--WSVGCIMAELLTGRTLFPGTD 223

Query: 253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRT 312
                +++         +      ++ E          +  K  F NV +          
Sbjct: 224 HIDQLKLILRLVGTPGAELLK--KISSESARNYIQSLTQMPKMNFANVFIGANP------ 275

Query: 313 ALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPPFIPSREENDLTE 372
              DL++++L  D  KR+     A +   H +F     D   + +  P+  S E  DL  
Sbjct: 276 LAVDLLEKMLVLDSDKRI----TAAQALAHAYFAQYH-DPDDEPVADPYDQSFESRDLLI 330

Query: 373 K 373
            
Sbjct: 331 D 331

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 2e-28
 Identities = 52/319 (16%), Positives = 94/319 (29%), Gaps = 78/319 (24%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           +  ++L+    LG+G  G V++              A+K +   T+     +      E 
Sbjct: 14  IPRESLRLEVKLGQGCFGEVWMGTWNGTTR-----VAIKTLKPGTM-----SPEAFLQEA 63

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
           +V+ +L H  L +L   +  +        Y   G L      +  +      +    ++I
Sbjct: 64  QVMKKLRHEKLVQLYAVVSEEPIY-IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQI 122

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
              + ++  M   +RDL+  NIL+ ++    + DF L+R                   ++
Sbjct: 123 ASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLAR-------------------LI 163

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
              E   R          A      G    KS                            
Sbjct: 164 EDNEYTARQGAKFPIKWTAPEAALYGRFTIKS---------------------------- 195

Query: 255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL----MKTPEFVGQ 310
                   D   F +    L         G  P+ G   +E    V     M  P    +
Sbjct: 196 --------DVWSFGILLTEL------TTKGRVPYPGMVNREVLDQVERGYRMPCPPECPE 241

Query: 311 RTALTDLIQRLLEKDPVKR 329
              L DL+ +   K+P +R
Sbjct: 242 S--LHDLMCQCWRKEPEER 258

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-28
 Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWE 73
              + L   K LG GA G V            A    A+K++  S    + EA      E
Sbjct: 20  FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMS---E 76

Query: 74  IRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDR------------ 120
           ++VLS L  H  +  LLG+            YC  GDL     ++ D             
Sbjct: 77  LKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIME 136

Query: 121 ----VFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
                     +  +  ++   +  L +    +RDL   NIL+       + DF L+R++
Sbjct: 137 DDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDI 195

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 4e-28
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           K LG G  GTV   + +          A+K++           +     E  V+ +L +P
Sbjct: 13  KELGSGNFGTVKKGYYQ--MKKVVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNP 68

Query: 84  FLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN 143
           ++ +++G  E + ++   +     G LN  +Y Q +R      I   + ++   +++L  
Sbjct: 69  YIVRMIGICEAESWM-LVMEMAELGPLN--KYLQQNRHVKDKNIIELVHQVSMGMKYLEE 125

Query: 144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
               +RDL   N+L+    +  ++DF LS+ L
Sbjct: 126 SNFVHRDLAARNVLLVTQHYAKISDFGLSKAL 157

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 1e-15
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 8/121 (6%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRK 294
           +   +  +         ++ +PE +         D W+ G+L +E   YG  P+RG    
Sbjct: 158 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS 217

Query: 295 ETFRNVL----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW 350
           E    +     M  P    +   + DL+      D   R G+         + ++  V  
Sbjct: 218 EVTAMLEKGERMGCPAGCPRE--MYDLMNLCWTYDVENRPGF-AAVELRLRNYYYDVVNE 274

Query: 351 D 351
            
Sbjct: 275 G 275

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 4e-28
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 12  TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRAR 71
           T  +    +   K++G G  G V+    + +      P A+K +         +      
Sbjct: 1   TTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG---YTEKQRVDFL 57

Query: 72  WEIRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYL 131
            E  ++ + SH  + +L G +   + +     Y   G L+    ++ D  FS   +   L
Sbjct: 58  GEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKF-LREKDGEFSVLQLVGML 116

Query: 132 SEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
             I   +++L NM   +RDL   NIL+  +    ++DF LSR L
Sbjct: 117 RGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL 160

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 3e-10
 Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 236 QQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRK 294
           +   +    ++       + +PE +       A D W+ GI+ +E++ YG  P+   +  
Sbjct: 161 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH 220

Query: 295 ETFRNVL--MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           E  + +    + P  +   +A+  L+ +  +++  +R
Sbjct: 221 EVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARR 257

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  109 bits (272), Expect = 1e-27
 Identities = 55/339 (16%), Positives = 100/339 (29%), Gaps = 92/339 (27%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRV 76
           +N++ ++ +G+GA G VF                A+K++ +    A  + +   + E  +
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKE---EASADMQADFQREAAL 69

Query: 77  LSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLN----------------------VLR 114
           ++   +P + KLLG     + +     Y   GDLN                         
Sbjct: 70  MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARV 129

Query: 115 YKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN 174
                   S +       ++   + +L      +RDL   N L+ ++  V + DF LSRN
Sbjct: 130 SSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRN 189

Query: 175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSR 234
                              +   +  K             PE+    + T  +       
Sbjct: 190 -------------------IYSADYYKADGNDAIPIRWMPPESIFYNRYTTES------- 223

Query: 235 RQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK 294
                                       D   + V  W +        YG  P+ G   +
Sbjct: 224 ----------------------------DVWAYGVVLWEI------FSYGLQPYYGMAHE 249

Query: 295 ETFRNV----LMKTPEFVGQRTALTDLIQRLLEKDPVKR 329
           E    V    ++  PE       L +L++    K P  R
Sbjct: 250 EVIYYVRDGNILACPENCPLE--LYNLMRLCWSKLPADR 286

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (267), Expect = 3e-27
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 14  SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           S D   LK    +G+G+  TV+   D           A   +    L       +R + E
Sbjct: 5   SNDGRFLKFDIEIGRGSFKTVYKGLDTETT----VEVAWCELQDRKL--TKSERQRFKEE 58

Query: 74  IRVLSRLSHPFLPKLLGSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRF 129
             +L  L HP + +   S E+     + +         G L    Y +  +V    V+R 
Sbjct: 59  AEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTL--KTYLKRFKVMKIKVLRS 116

Query: 130 YLSEIICAIEHLHNMG--IAYRDLKPENILIR-QSGHVTLTDFDLSR 173
           +  +I+  ++ LH     I +RDLK +NI I   +G V + D  L+ 
Sbjct: 117 WCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 163

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (216), Expect = 4e-20
 Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGK-NRKETF 297
                 + + +GT E+++PE+     ++ +VD +A G+   EM     P+    N  + +
Sbjct: 164 LKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIY 222

Query: 298 RNVLMKTPEFVGQRTA---LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFK 346
           R V          + A   + ++I+  + ++  +R        ++  H FF+
Sbjct: 223 RRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERY----SIKDLLNHAFFQ 270

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (269), Expect = 3e-27
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 12/159 (7%)

Query: 18  DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVL 77
           D      +LG GA   V L  D+          A+K + K  L  K   E     EI VL
Sbjct: 9   DIYDFRDVLGTGAFSEVILAEDKRTQ----KLVAIKCIAKKALEGK---EGSMENEIAVL 61

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
            ++ HP +  L    E+   L   +    GG+L           ++       + +++ A
Sbjct: 62  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGEL--FDRIVEKGFYTERDASRLIFQVLDA 119

Query: 138 IEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR 173
           +++LH++GI +RDLKPEN+L     +   + ++DF LS+
Sbjct: 120 VKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK 158

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.6 bits (245), Expect = 7e-24
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
           +  D G   ++  GT  YV+PEV+    +  AVD W++G++ Y +L G  PF  +N  + 
Sbjct: 158 KMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKL 217

Query: 297 FRNVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW- 350
           F  +L    EF          +  D I+ L+EKDP KR        +  +H +  G    
Sbjct: 218 FEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF----TCEQALQHPWIAGDTAL 273

Query: 351 -----DLLTDVLRPPFIPSREENDLTEKAM 375
                  +++ ++  F  S+ +      A+
Sbjct: 274 DKNIHQSVSEQIKKNFAKSKWKQAFNATAV 303

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 6e-27
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 5/161 (3%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEI 74
           L     K +K+LG GA GTV+           + P A+K + ++T     +A +    E 
Sbjct: 6   LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEA 62

Query: 75  RVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
            V++ + +P + +LLG   T           P G L     +  D       +  +  +I
Sbjct: 63  YVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDN-IGSQYLLNWCVQI 120

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL 175
              + +L +  + +RDL   N+L++   HV +TDF L++ L
Sbjct: 121 AKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 161

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 5e-11
 Identities = 12/103 (11%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 232 VSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRG 290
           +++   + +    +       ++++ E +    +    D W+ G+  +E++ +G+ P+ G
Sbjct: 157 LAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 216

Query: 291 KNRKETFRNVL----MKTPEFVGQRTALTDLIQRLLEKDPVKR 329
               E    +     +  P        +  ++ +    D   R
Sbjct: 217 IPASEISSILEKGERLPQPPICTID--VYMIMVKCWMIDADSR 257

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-26
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 12/159 (7%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRVLSRL 80
            + LG G    V    +++        +A K + K    +      R     E+ +L  +
Sbjct: 15  GEELGSGQFAVVKKCREKSTG----LQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI 70

Query: 81  SHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEH 140
            HP +  L    E    +   +    GG+L    +       +      +L +I+  + +
Sbjct: 71  QHPNVITLHEVYENKTDVILILELVAGGEL--FDFLAEKESLTEEEATEFLKQILNGVYY 128

Query: 141 LHNMGIAYRDLKPENILIRQSG----HVTLTDFDLSRNL 175
           LH++ IA+ DLKPENI++         + + DF L+  +
Sbjct: 129 LHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI 167

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 4e-25
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)

Query: 237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET 296
              D G    +  GT E+V+PE+V  +      D W++G++TY +L G +PF G  ++ET
Sbjct: 165 HKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET 224

Query: 297 FRNVLMKTPEFVGQR-----TALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD 351
             NV     EF  +          D I+RLL KDP KR+       +  +H + K     
Sbjct: 225 LANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM----TIQDSLQHPWIKPKDTQ 280

Query: 352 -LLTDVLRPP 360
             L+     P
Sbjct: 281 QALSSAWSHP 290

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-26
 Identities = 63/337 (18%), Positives = 109/337 (32%), Gaps = 56/337 (16%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS- 81
           +  +G+GA G VF   D           ALK V   T   +         E+ VL  L  
Sbjct: 12  VAEIGEGAYGKVFKARDL---KNGGRFVALKRVRVQT--GEEGMPLSTIREVAVLRHLET 66

Query: 82  --HPFLPKLLG-----SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEI 134
             HP + +L         + +  L     +        L             I+  + ++
Sbjct: 67  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPG-VPTETIKDMMFQL 125

Query: 135 ICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVL 194
           +  ++ LH+  + +RDLKP+NIL+  SG + L DF L+R                     
Sbjct: 126 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY------------------- 166

Query: 195 PVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY 254
             +        ++T W  A          + +  V   S      +   R   F G+ + 
Sbjct: 167 --SFQMALTSVVVTLWYRAPEVLLQS---SYATPVDLWSVGCIFAEMFRRKPLFRGSSDV 221

Query: 255 -VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVGQRTA 313
               +++   G     DW     L  +       F  K+ +   + V             
Sbjct: 222 DQLGKILDVIGLPGEEDWPRDVALPRQA------FHSKSAQPIEKFVTDIDELGK----- 270

Query: 314 LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW 350
             DL+ + L  +P KR+     A     H +F+ +  
Sbjct: 271 --DLLLKCLTFNPAKRI----SAYSALSHPYFQDLER 301

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 5e-26
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARW--EIRVLSRL 80
             +LG G  G+V+     + +     P A+K V+K  +    E     R   E+ +L ++
Sbjct: 9   GPLLGSGGFGSVYSGIRVSDN----LPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 64

Query: 81  S--HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
           S     + +LL   E  +     +              +        + R +  +++ A+
Sbjct: 65  SSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGA-LQEELARSFFWQVLEAV 123

Query: 139 EHLHNMGIAYRDLKPENILIRQS-GHVTLTDFDLSRNL 175
            H HN G+ +RD+K ENILI  + G + L DF     L
Sbjct: 124 RHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL 161

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 2e-17
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 239 FDNGERSNSFVGTEEYVSPEVVRGDGHE-FAVDWWALGILTYEMLYGTTPFRGKNRKETF 297
                    F GT  Y  PE +R   +   +   W+LGIL Y+M+ G  PF      E  
Sbjct: 160 LLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE--EII 217

Query: 298 RNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR 349
           R  +          +    LI+  L   P  R        EI+ H + + V 
Sbjct: 218 RGQVFFRQRV---SSECQHLIRWCLALRPSDRP----TFEEIQNHPWMQDVL 262

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 4e-25
 Identities = 51/343 (14%), Positives = 91/343 (26%), Gaps = 102/343 (29%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
            + +GKG  G V+    R          A+K+        + E       EI     L H
Sbjct: 8   QESIGKGRFGEVWRGKWRGE------EVAVKIFSS-----REERSWFREAEIYQTVMLRH 56

Query: 83  PFLPKLLGSLETDEFLAWAV----PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAI 138
             +   + +   D      +     Y   G L    Y     V    +I+  L      +
Sbjct: 57  ENILGFIAADNKDNGTWTQLWLVSDYHEHGSL--FDYLNRYTVTVEGMIKLAL-STASGL 113

Query: 139 EHLH--------NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
            HLH           IA+RDLK +NIL++++G   + D  L+      T           
Sbjct: 114 AHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATD---------- 163

Query: 191 FPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG 250
                 T +   + R+ T+   A PE        K                         
Sbjct: 164 ------TIDIAPNHRVGTKRYMA-PEVLDDSINMKHFESFK------------------- 197

Query: 251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET-------------- 296
                              D +A+G++ +E+    +        +               
Sbjct: 198 -----------------RADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE 240

Query: 297 ---------FRNVLMKTPEFVGQRTALTDLIQRLLEKDPVKRL 330
                     R  +    +       +  +++     +   RL
Sbjct: 241 MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARL 283

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 5e-25
 Identities = 52/311 (16%), Positives = 98/311 (31%), Gaps = 70/311 (22%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHP 83
           +++G+G  G V+       D   +   A+K +++ T         +   E  ++   SHP
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGK-KIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHP 88

Query: 84  FLPKLLGSLETDEFLAWAV-PYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH 142
            +  LLG     E     V PY   GDL      +        +I F L ++   ++ L 
Sbjct: 89  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL-QVAKGMKFLA 147

Query: 143 NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKR 202
           +    +RDL   N ++ +   V + DF L+R++  K      +    K PV  +      
Sbjct: 148 SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA----- 202

Query: 203 HRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRG 262
                        E+    K T  + V                                 
Sbjct: 203 ------------LESLQTQKFTTKSDV--------------------------------- 217

Query: 263 DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL----MKTPEFVGQRTALTDLI 318
               ++       ++T     G  P+   N  +    +L    +  PE+      L +++
Sbjct: 218 ----WSFGVLLWELMT----RGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDP--LYEVM 267

Query: 319 QRLLEKDPVKR 329
            +        R
Sbjct: 268 LKCWHPKAEMR 278

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 20/188 (10%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAADPTARC-PFALKVVDKSTLHAKHEAERRARWE 73
              D LK  K LG+GA G V        D TA C   A+K++ +   H++H A      E
Sbjct: 10  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS---E 66

Query: 74  IRVLSRLSHPFLPKLLG--SLETDEFLAWAVPYCPGGDLNVLRYKQND------------ 119
           +++L  + H      L     +    L   V +C  G+L+     + +            
Sbjct: 67  LKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDL 126

Query: 120 --RVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK 177
                +   +  Y  ++   +E L +    +RDL   NIL+ +   V + DF L+R++ K
Sbjct: 127 YKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYK 186

Query: 178 KTAFEKQS 185
              + ++ 
Sbjct: 187 DPDYVRKG 194

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 8e-09
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 12/116 (10%)

Query: 233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGT-TPFRGK 291
           +R      +  R        ++++PE +    +    D W+ G+L +E+     +P+ G 
Sbjct: 181 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 240

Query: 292 NRKETFRNVL-----MKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH 342
              E F   L     M+ P++      +   +      +P +R        E+ EH
Sbjct: 241 KIDEEFCRRLKEGTRMRAPDYTTPE--MYQTMLDCWHGEPSQRP----TFSELVEH 290

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 46/322 (14%), Positives = 103/322 (31%), Gaps = 66/322 (20%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWE 73
           +  + +   + LG+G+ G V+    +           A+K V+++   A          E
Sbjct: 17  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA---ASMRERIEFLNE 73

Query: 74  IRVLSRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLS 132
             V+   +   + +LLG +   +     +     GDL + LR  +     +P +    LS
Sbjct: 74  ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLS 133

Query: 133 EIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFP 192
           ++I     + +       L     + R    +   +  ++ +   K              
Sbjct: 134 KMIQMAGEIAD---GMAYLNANKFVHR---DLAARNCMVAEDFTVK-------------- 173

Query: 193 VLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE 252
                        I    +                      R     D   +    +   
Sbjct: 174 -------------IGDFGMT---------------------RDIYETDYYRKGGKGLLPV 199

Query: 253 EYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNV----LMKTPEF 307
            ++SPE ++        D W+ G++ +E+      P++G + ++  R V    L+  P+ 
Sbjct: 200 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 259

Query: 308 VGQRTALTDLIQRLLEKDPVKR 329
                 L +L++   + +P  R
Sbjct: 260 CPDM--LFELMRMCWQYNPKMR 279

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (239), Expect = 4e-23
 Identities = 58/324 (17%), Positives = 104/324 (32%), Gaps = 61/324 (18%)

Query: 15  LDLDNLKALKILGKGAMGTVFLVHDRAAD---PTARCPFALKVVDKSTLHAKHEAERRAR 71
           L  D L   K LG+GA G V L      D   P      A+K++      A  +      
Sbjct: 10  LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKS---DATEKDLSDLI 66

Query: 72  WEIRVLSRLS-HPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFY 130
            E+ ++  +  H  +  LLG+   D  L   V Y   G+                     
Sbjct: 67  SEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGN--------------------- 105

Query: 131 LSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNK 190
           L E + A               PE  L                +   + A   + L + K
Sbjct: 106 LREYLQARRPPGLEYSYNPSHNPEEQL----------SSKDLVSCAYQVARGMEYLASKK 155

Query: 191 FPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG 250
                       HR +  R +    +N   +          ++R     D  +++ +   
Sbjct: 156 CI----------HRDLAARNVLVTEDNVMKIADF------GLARDIHHIDYYKKTTNGRL 199

Query: 251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEML-YGTTPFRGKNRKETFRNVL----MKTP 305
             ++++PE +    +    D W+ G+L +E+   G +P+ G   +E F+ +     M  P
Sbjct: 200 PVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKP 259

Query: 306 EFVGQRTALTDLIQRLLEKDPVKR 329
                   L  +++      P +R
Sbjct: 260 SNCTNE--LYMMMRDCWHAVPSQR 281

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (229), Expect = 1e-21
 Identities = 59/390 (15%), Positives = 116/390 (29%), Gaps = 67/390 (17%)

Query: 23  LKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH 82
           ++ LG G   TV+L  D   +       A+K+V    ++ +      A  EI++L R++ 
Sbjct: 18  VRKLGWGHFSTVWLAKDMVNN----THVAMKIVRGDKVYTE-----AAEDEIKLLQRVND 68

Query: 83  PFLPKLLGSLE--------------TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIR 128
               K                     +      V    G +L  L  K   R      ++
Sbjct: 69  ADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVK 128

Query: 129 FYLSEIICAIEHLH-NMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLN 187
               +++  ++++H   GI + D+KPEN+L+                 +K          
Sbjct: 129 QISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ------IKIADLGNA--- 179

Query: 188 NNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS-------RRQQSFD 240
                        + +   +    +  PE   G      A +   +            F+
Sbjct: 180 ---------CWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFE 230

Query: 241 NGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV 300
             E  +     +       + G+   + +         +                    +
Sbjct: 231 PDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVL 290

Query: 301 LMKTPEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWDLLTDVLRPP 360
             K      +   ++D +  +L+ DP KR      A  +  H + K     L  + +R P
Sbjct: 291 TEKYKFSKDEAKEISDFLSPMLQLDPRKRA----DAGGLVNHPWLKDT---LGMEEIRVP 343

Query: 361 FIPSREENDLTEKAMSGGGVDIREYFENLR 390
                         + G G DI  +FE +R
Sbjct: 344 DRE-----------LYGSGSDIPGWFEEVR 362

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 74.4 bits (182), Expect = 3e-16
 Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 17/165 (10%)

Query: 24  KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK------HEAERRARWEIRVL 77
           K++G+G    VF  +             +K         K         +          
Sbjct: 6   KLMGEGKESAVFNCYSEKFGE-----CVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRS 60

Query: 78  SRLSHPFLPKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICA 137
           +R     L KL G       +     +     L  L   +             L  I+  
Sbjct: 61  ARNEFRALQKLQG-----LAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEE 115

Query: 138 IEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFE 182
           +   ++ GI + DL   N+L+ + G   + DF  S  + ++   E
Sbjct: 116 VAKFYHRGIVHGDLSQYNVLVSEEGIW-IIDFPQSVEVGEEGWRE 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.94
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.61
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.98
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.9
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.18
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.63
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	96.62

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-67  Score=505.48  Aligned_cols=283  Identities=36%  Similarity=0.666  Sum_probs=249.8

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +++++|+++++||+|+||+||+|+++.++.    .||||++++...... .....+.+|+.+|++++|||||+++++|++
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~~~~~----~~AiK~i~k~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~   76 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREKATGR----YYAMKILRKEVIIAK-DEVAHTVTESRVLQNTRHPFLTALKYAFQT   76 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCCTTBCCEEEEEEC
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEECCCCC----EEEEEEEchhhccCH-HHHHHHHHHHHHHHhCCCCCEEEEEeeecc
Confidence            689999999999999999999999987554    499999988765332 335667789999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.+|+|||||.||+|..++....  .+++.+++.+++||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.
T Consensus        77 ~~~~~iv~ey~~gg~L~~~~~~~~--~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~  154 (337)
T d1o6la_          77 HDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             ccccccceeccCCCchhhhhhccc--CCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccc
Confidence            999999999999999988877654  499999999999999999999999999999999999999999999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ...                                                               ......+++||+.|
T Consensus       155 ~~~---------------------------------------------------------------~~~~~~~~~GT~~Y  171 (337)
T d1o6la_         155 GIS---------------------------------------------------------------DGATMKTFCGTPEY  171 (337)
T ss_dssp             SCC---------------------------------------------------------------TTCCBCCCEECGGG
T ss_pred             ccc---------------------------------------------------------------CCcccccceeCHHH
Confidence            421                                                               12334567999999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ||||++.+.+|+.++|||||||++|||++|++||.+.+..+++..+....+.++. .++++++||++||++||.+|+++.
T Consensus       172 ~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~  251 (337)
T d1o6la_         172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGG  251 (337)
T ss_dssp             CCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCS
T ss_pred             hhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHhhccCCchhhcccc
Confidence            9999999999999999999999999999999999999999999999887766654 689999999999999999999753


Q ss_pred             C-ChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          334 R-GACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       334 ~-~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                      . +++++++||||++++|+.+.. ...|||.|....
T Consensus       252 ~~~~~eil~Hp~f~~i~~~~l~~~~~~~p~~P~~~~  287 (337)
T d1o6la_         252 PSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTS  287 (337)
T ss_dssp             TTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSS
T ss_pred             cccHHHHHcCcccccCCHHHHHhCCCCCCCCCCCCC
Confidence            3 589999999999999986644 567888886543

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-66  Score=490.45  Aligned_cols=279  Identities=36%  Similarity=0.597  Sum_probs=237.2

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|+++.++.    .||||++++..... ......+.+|+++|++++|||||+++++|+++
T Consensus         6 ~p~dy~i~~~lG~G~fg~Vy~a~~~~~~~----~vAvK~i~~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~   80 (288)
T d1uu3a_           6 RPEDFKFGKILGEGSFSTVVLARELATSR----EYAIKILEKRHIIK-ENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD   80 (288)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCHHHHHHHHHHHHHCCSTTBCCEEEEEECS
T ss_pred             CCCCCEEEEEEeeCCCeEEEEEEECCCCC----EEEEEEEehHHccC-HHHHHHHHHHHHHHHHcCCCCeeEEEEEEEEC
Confidence            45899999999999999999999987554    49999998765432 23456788899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+|||||.||+|..++....  .+++.+++.++.|++.||+|||++|||||||||+|||++.+|.+||+|||+|+.+
T Consensus        81 ~~~~ivmEy~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~  158 (288)
T d1uu3a_          81 EKLYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL  158 (288)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CEEEEEEEccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceec
Confidence            99999999999999988877654  4999999999999999999999999999999999999999999999999999865


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ...                                                             .......+.+||+.||
T Consensus       159 ~~~-------------------------------------------------------------~~~~~~~~~~GT~~Y~  177 (288)
T d1uu3a_         159 SPE-------------------------------------------------------------SKQARANSFVGTAQYV  177 (288)
T ss_dssp             C-----------------------------------------------------------------------CCCCGGGC
T ss_pred             ccC-------------------------------------------------------------CcccccccccCCcccc
Confidence            321                                                             1122334678999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-CCChHHHHHHHHhhhhCCCccCCCCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-GQRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      |||++.+..|+.++|||||||++|||++|++||.+.+..+++.++....+.++ ..++++++||.+||++||.+|++...
T Consensus       178 APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e  257 (288)
T d1uu3a_         178 SPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEE  257 (288)
T ss_dssp             CHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGG
T ss_pred             CceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHH
Confidence            99999999999999999999999999999999999999999999988776665 57899999999999999999995310


Q ss_pred             --ChhhhhcCCCCCCCCchhhcccCCCCCCC
Q 042539          335 --GACEIKEHVFFKGVRWDLLTDVLRPPFIP  363 (412)
Q Consensus       335 --~~~e~l~h~ff~~~~~~~~~~~~~pp~~p  363 (412)
                        ....+++||||++++|+.+... .||-+|
T Consensus       258 ~~~~~~i~~Hpff~~i~w~~l~~~-~pP~l~  287 (288)
T d1uu3a_         258 MEGYGPLKAHPFFESVTWENLHQQ-TPPKLT  287 (288)
T ss_dssp             GTCHHHHHTSGGGTTCCCTTGGGS-CCCCCC
T ss_pred             HcCCHHHHcCCccCCCCHHHhhcC-CCCCCC
Confidence              1223689999999999988664 444444

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.8e-65  Score=487.81  Aligned_cols=278  Identities=34%  Similarity=0.644  Sum_probs=244.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ++++|+++++||+|+||+||+|+++.++.    .||||++++..... ....+.+.+|+.+|+.++|||||++++++.++
T Consensus         2 sl~dy~i~~~lG~G~fg~Vy~a~~~~~g~----~vAvK~i~~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   76 (316)
T d1fota_           2 SLQDFQILRTLGTGSFGRVHLIRSRHNGR----YYAMKVLKKEIVVR-LKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA   76 (316)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS
T ss_pred             chhHeEEEEEEecCcCcEEEEEEECCCCC----EEEEEEEchHHccC-HHHHHHHHHHHHHHHhccCcChhheeeeEeeC
Confidence            67899999999999999999999987554    49999998765432 23456778899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+..
T Consensus        77 ~~~~ivmE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~  154 (316)
T d1fota_          77 QQIFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYV  154 (316)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEEC
T ss_pred             CeeeeEeeecCCccccccccccc--cccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEe
Confidence            99999999999999987776554  4899999999999999999999999999999999999999999999999999754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      .                                                                  ....+.+||+.||
T Consensus       155 ~------------------------------------------------------------------~~~~~~~Gt~~Y~  168 (316)
T d1fota_         155 P------------------------------------------------------------------DVTYTLCGTPDYI  168 (316)
T ss_dssp             S------------------------------------------------------------------SCBCCCCSCTTTC
T ss_pred             c------------------------------------------------------------------cccccccCccccc
Confidence            2                                                                  1123568999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCCC-
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGYL-  333 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~~-  333 (412)
                      |||++.+..|+.++|||||||++|+|++|+.||.+.+..+.+.+++.....+ ...++++.++|.+||++||.+|++.. 
T Consensus       169 APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r  248 (316)
T d1fota_         169 APEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQ  248 (316)
T ss_dssp             CHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSST
T ss_pred             CHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccccch
Confidence            9999999999999999999999999999999999999999999998877665 45789999999999999999998654 


Q ss_pred             CChhhhhcCCCCCCCCchhhc-ccCCCCCCCCCC
Q 042539          334 RGACEIKEHVFFKGVRWDLLT-DVLRPPFIPSRE  366 (412)
Q Consensus       334 ~~~~e~l~h~ff~~~~~~~~~-~~~~pp~~p~~~  366 (412)
                      ++++++++||||++++|+.+. ....+||.|...
T Consensus       249 ~t~~~il~Hp~f~~i~~~~l~~~~~~~p~~p~~~  282 (316)
T d1fota_         249 NGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQ  282 (316)
T ss_dssp             TTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC-
T ss_pred             hhHHHHHcCcccccCCHHHHHhCCCCcCCCCCcC
Confidence            379999999999999999664 456788887643

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-63  Score=486.21  Aligned_cols=282  Identities=33%  Similarity=0.596  Sum_probs=247.0

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ...+++|++++.||+|+||+||+|+++.++.    .||||++.+..... ....+.+.+|+++|+.++|||||+++++|.
T Consensus        37 ~~~ld~y~i~~~lG~G~fg~Vy~a~~~~~g~----~~AvK~i~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~  111 (350)
T d1rdqe_          37 TAQLDQFDRIKTLGTGSFGRVMLVKHKESGN----HYAMKILDKQKVVK-LKQIEHTLNEKRILQAVNFPFLVKLEFSFK  111 (350)
T ss_dssp             CCCGGGEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             CCCccCeEEEEEeecCcCcEEEEEEECCCCC----EEEEEEEchHHccC-HHHHHHHHHHHHHHHHcCCCcEeecccccc
Confidence            4567999999999999999999999987554    49999998765432 233456788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                      +.+.+|+|||||.||+|..++....  .+++.+++.++.||+.||.|||++|||||||||+|||++.+|++||+|||+|+
T Consensus       112 ~~~~~~~v~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~  189 (350)
T d1rdqe_         112 DNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAK  189 (350)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cccccccccccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeee
Confidence            9999999999999999988877654  49999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.                                                                  ....+.+||+.
T Consensus       190 ~~~------------------------------------------------------------------~~~~~~~Gt~~  203 (350)
T d1rdqe_         190 RVK------------------------------------------------------------------GRTWTLCGTPE  203 (350)
T ss_dssp             ECS------------------------------------------------------------------SCBCCCEECGG
T ss_pred             ecc------------------------------------------------------------------cccccccCccc
Confidence            642                                                                  11235689999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCccCCC
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      |||||++.+..|+.++|||||||++|||++|++||.+.+....+.++....+.+ ..+++++.+||.+||++||.+|+..
T Consensus       204 Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~  283 (350)
T d1rdqe_         204 ALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGN  283 (350)
T ss_dssp             GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTS
T ss_pred             cCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhhCHHhcccc
Confidence            999999999999999999999999999999999999999999999988776555 4578999999999999999999743


Q ss_pred             -CCChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          333 -LRGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       333 -~~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                       .++++++++||||++++|..+.. ...|||+|....+
T Consensus       284 ~r~t~~ell~Hp~f~~~~~~~~~~~~~~~p~~p~~~~~  321 (350)
T d1rdqe_         284 LKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGP  321 (350)
T ss_dssp             STTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCST
T ss_pred             ccccHHHHHcCccccCCCHHHHHhcCCCcCccCCCCCc
Confidence             34799999999999999986644 5688999876543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-64  Score=472.88  Aligned_cols=257  Identities=30%  Similarity=0.519  Sum_probs=229.6

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      .++++|++++.||+|+||+||+|+++.++.    .||+|++.+..... ......+.+|+++++.++|||||++++++.+
T Consensus         3 ~~l~dy~i~~~iG~G~fg~Vy~~~~~~~~~----~vAiK~i~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~   77 (263)
T d2j4za1           3 WALEDFEIGRPLGKGKFGNVYLAREKQSKF----ILALKVLFKAQLEK-AGVEHQLRREVEIQSHLRHPNILRLYGYFHD   77 (263)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEHHHHHH-TTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             cchhHeEEEEEEecCCCcEEEEEEECCCCc----EEEEEEEchHHccC-hHHHHHHHHHHHHHHhcCCCCCCeEEEEEEE
Confidence            468999999999999999999999987554    49999998765432 2345677889999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.
T Consensus        78 ~~~~~ivmEy~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~  155 (263)
T d2j4za1          78 ATRVYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVH  155 (263)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSC
T ss_pred             CCEEEEEEeecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeee
Confidence            999999999999999988887654  499999999999999999999999999999999999999999999999999965


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ..                                                                 .......+||+.|
T Consensus       156 ~~-----------------------------------------------------------------~~~~~~~~Gt~~Y  170 (263)
T d2j4za1         156 AP-----------------------------------------------------------------SSRRTTLCGTLDY  170 (263)
T ss_dssp             CC-----------------------------------------------------------------CCCCEETTEEGGG
T ss_pred             cC-----------------------------------------------------------------CCcccccCCCCcc
Confidence            31                                                                 1123356899999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      ||||++.+..|+.++|||||||++|||++|++||.+.+..+.+.++....+.++. .++++++||.+||++||++||   
T Consensus       171 ~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~---  247 (263)
T d2j4za1         171 LPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP---  247 (263)
T ss_dssp             CCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSC---
T ss_pred             cCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCc---
Confidence            9999999999999999999999999999999999999999999998887766654 689999999999999999999   


Q ss_pred             CChhhhhcCCCCCC
Q 042539          334 RGACEIKEHVFFKG  347 (412)
Q Consensus       334 ~~~~e~l~h~ff~~  347 (412)
                       +++|+++||||++
T Consensus       248 -t~~eil~hp~~~~  260 (263)
T d2j4za1         248 -MLREVLEHPWITA  260 (263)
T ss_dssp             -CHHHHHTCHHHHH
T ss_pred             -CHHHHHcCcCcCC
Confidence             6999999999963

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-63  Score=479.96  Aligned_cols=277  Identities=35%  Similarity=0.689  Sum_probs=233.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHh-hcCCCccceeeeeEEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLS-RLSHPFLPKLLGSLETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~-~l~hpnIv~l~~~~~~~   95 (412)
                      +++|+++++||+|+||+||+|+++.++    +.||||++++....... ....+.+|+.++. .++|||||+++++++++
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~t~----~~vAvK~i~k~~~~~~~-~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~   75 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKKTN----QFFAIKALKKDVVLMDD-DVECTMVEKRVLSLAWEHPFLTHMFCTFQTK   75 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTT----EEEEEEEEEHHHHHHTT-CHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECCCC----CEEEEEEEchhhccChH-HHHHHHHHHHHHHHhCCCCcEEEEEEEEccC
Confidence            589999999999999999999998754    45999999876543332 2344555777665 68999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+..
T Consensus        76 ~~~yivmEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~  153 (320)
T d1xjda_          76 ENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN  153 (320)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             CceeEEEeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhc
Confidence            99999999999999998887654  4999999999999999999999999999999999999999999999999999754


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ..                                                               ........+||+.|+
T Consensus       154 ~~---------------------------------------------------------------~~~~~~~~~gt~~y~  170 (320)
T d1xjda_         154 ML---------------------------------------------------------------GDAKTNTFCGTPDYI  170 (320)
T ss_dssp             CC---------------------------------------------------------------TTCCBCCCCSCGGGC
T ss_pred             cc---------------------------------------------------------------ccccccccCCCCCcC
Confidence            21                                                               112233568999999


Q ss_pred             cceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC-CChHHHHHHHHhhhhCCCccCCCCC
Q 042539          256 SPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFVG-QRTALTDLIQRLLEKDPVKRLGYLR  334 (412)
Q Consensus       256 APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~dli~~~L~~dP~~R~~~~~  334 (412)
                      |||++.+..|+.++|||||||++|+|++|+.||.+.+..+++.++....+.++. +++++.+||++||++||++||+   
T Consensus       171 aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s---  247 (320)
T d1xjda_         171 APEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLG---  247 (320)
T ss_dssp             CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBT---
T ss_pred             CHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHhcccCCCCCcC---
Confidence            999999999999999999999999999999999999999999999888777654 6899999999999999999994   


Q ss_pred             Ch-hhhhcCCCCCCCCchhhcc-cCCCCCCCCCCC
Q 042539          335 GA-CEIKEHVFFKGVRWDLLTD-VLRPPFIPSREE  367 (412)
Q Consensus       335 ~~-~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~  367 (412)
                       + .++++||||++++|+.+.. ...||+.|...+
T Consensus       248 -~~~~l~~hpff~~~~~~~l~~~~~~pp~~p~~~~  281 (320)
T d1xjda_         248 -VRGDIRQHPLFREINWEELERKEIDPPFRPKVKS  281 (320)
T ss_dssp             -TBSCGGGSGGGTTCCHHHHHTTCSCC--------
T ss_pred             -HHHHHHhCchhccCCHHHHHhcCCCCCCCCCCCC
Confidence             5 4899999999999986644 557888876544

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-63  Score=469.42  Aligned_cols=258  Identities=24%  Similarity=0.410  Sum_probs=215.7

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      .+++|++++.||+|+||+||+|+++.++.    .||||++.+...   .+..+.+.+|+++|++++|||||++++++.++
T Consensus         3 f~~dy~~~~~lG~G~fg~V~~~~~~~~~~----~vAiK~i~~~~~---~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~   75 (271)
T d1nvra_           3 FVEDWDLVQTLGEGAYGEVQLAVNRVTEE----AVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREG   75 (271)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECC----------CHHHHHHHHHTCCCTTBCCEEEEEEET
T ss_pred             CCcceEEEEEEecCcCeEEEEEEECCCCC----EEEEEEEehhhc---chHHHHHHHHHHHHHhCCCCCEeeEeeeeccC
Confidence            36899999999999999999999987554    499999976543   22345678899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchh
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNL  175 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~  175 (412)
                      +.+|+|||||.||+|.+++...  +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+|+.+
T Consensus        76 ~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~  153 (271)
T d1nvra_          76 NIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVF  153 (271)
T ss_dssp             TEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceeEEEEeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheee
Confidence            9999999999999998877543  45999999999999999999999999999999999999999999999999999865


Q ss_pred             hchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCc
Q 042539          176 VKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYV  255 (412)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  255 (412)
                      ....                                                             ......+.+||+.||
T Consensus       154 ~~~~-------------------------------------------------------------~~~~~~~~~GT~~Y~  172 (271)
T d1nvra_         154 RYNN-------------------------------------------------------------RERLLNKMCGTLPYV  172 (271)
T ss_dssp             EETT-------------------------------------------------------------EECCBCCCCSCGGGS
T ss_pred             ccCC-------------------------------------------------------------ccccccceeeCcCcc
Confidence            3211                                                             112234678999999


Q ss_pred             cceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHH-HHHHHhcCC---CCCCCCChHHHHHHHHhhhhCCCccC
Q 042539          256 SPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKE-TFRNVLMKT---PEFVGQRTALTDLIQRLLEKDPVKRL  330 (412)
Q Consensus       256 APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~-~~~~i~~~~---~~~~~~~~~~~dli~~~L~~dP~~R~  330 (412)
                      |||++.+..+ +.++|||||||++|||++|++||.+.+... .+..+....   ..+...++++.+||.+||+.||++||
T Consensus       173 APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  252 (271)
T d1nvra_         173 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARI  252 (271)
T ss_dssp             CTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             CHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCc
Confidence            9999998886 688999999999999999999998765433 333333322   22345689999999999999999999


Q ss_pred             CCCCChhhhhcCCCCCC
Q 042539          331 GYLRGACEIKEHVFFKG  347 (412)
Q Consensus       331 ~~~~~~~e~l~h~ff~~  347 (412)
                          +++|+++||||+.
T Consensus       253 ----t~~eil~hpwf~~  265 (271)
T d1nvra_         253 ----TIPDIKKDRWYNK  265 (271)
T ss_dssp             ----CHHHHTTCTTTTC
T ss_pred             ----CHHHHhcCHhhCc
Confidence                6999999999974

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-62  Score=478.41  Aligned_cols=283  Identities=33%  Similarity=0.608  Sum_probs=232.7

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH--HHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH--EAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++++|+++++||+|+||+||+|+++.++.    .||||++.+..+....  ....+..+|+++++.++|||||+++++|
T Consensus         1 lslddy~i~~~lG~G~fg~Vy~~~~~~t~~----~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~   76 (364)
T d1omwa3           1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGK----MYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF   76 (364)
T ss_dssp             CCSTTEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE
T ss_pred             CCHHhCeeeeEEecCCCeEEEEEEECCCCC----EEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence            578999999999999999999999987654    4999999876543221  2222333457777888899999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+++.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|
T Consensus        77 ~~~~~~~ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla  154 (364)
T d1omwa3          77 HTPDKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA  154 (364)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTC
T ss_pred             EECCEEEEEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeecee
Confidence            99999999999999999998887654  4899999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+..                                                                 ......+||+
T Consensus       155 ~~~~~-----------------------------------------------------------------~~~~~~~GT~  169 (364)
T d1omwa3         155 CDFSK-----------------------------------------------------------------KKPHASVGTH  169 (364)
T ss_dssp             EECSS-----------------------------------------------------------------SCCCSCCSCG
T ss_pred             eecCC-----------------------------------------------------------------Cccccccccc
Confidence            75421                                                                 1223568999


Q ss_pred             CCccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCH---HHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNR---KETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|||||++.+ ..|+.++|||||||++|||++|+.||.+.+.   .+....+....+.+ ..+++++++||.+||++||.
T Consensus       170 ~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  249 (364)
T d1omwa3         170 GYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVN  249 (364)
T ss_dssp             GGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTT
T ss_pred             ccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHH
Confidence            9999999974 5789999999999999999999999987543   33344433433433 35789999999999999999


Q ss_pred             ccCCCC-CChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          328 KRLGYL-RGACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       328 ~R~~~~-~~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      +|+++. .+++|+++||||++++|..+.. ...||++|.....
T Consensus       250 ~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~  292 (364)
T d1omwa3         250 RRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEV  292 (364)
T ss_dssp             TSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--
T ss_pred             HhCCCcccCHHHHHcCccccCCCHHHHhcCCCCcCcCCCCCCC
Confidence            999753 3489999999999999986644 5578888866543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-62  Score=466.37  Aligned_cols=252  Identities=27%  Similarity=0.404  Sum_probs=220.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||||++++.....    .+.+.+|+++|++++|||||+++++|.+++.
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~----~vAvK~~~~~~~~~----~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   91 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQ----EVAIRQMNLQQQPK----KELIINEILVMRENKNPNIVNYLDSYLVGDE   91 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCC----EEEEEEEEGGGCSC----HHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCC----EEEEEEEecccChH----HHHHHHHHHHHHhCCCCCEeeEeEEEEECCE
Confidence            579999999999999999999887554    49999997654322    3567789999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++...   .+++.+++.++.||+.||+|||++|||||||||+|||++.+|++||+|||+|+.+..
T Consensus        92 ~~ivmEy~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~  168 (293)
T d1yhwa1          92 LWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP  168 (293)
T ss_dssp             EEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             EEEEEEecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeecc
Confidence            99999999999998876542   499999999999999999999999999999999999999999999999999976521


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                                                                                     ........+||+.||||
T Consensus       169 ---------------------------------------------------------------~~~~~~~~~gt~~Y~aP  185 (293)
T d1yhwa1         169 ---------------------------------------------------------------EQSKRSTMVGTPYWMAP  185 (293)
T ss_dssp             ---------------------------------------------------------------TTCCBCCCCSCGGGCCH
T ss_pred             ---------------------------------------------------------------ccccccccccCCCccCh
Confidence                                                                           11233456899999999


Q ss_pred             eeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-CC---CCCCChHHHHHHHHhhhhCCCccCCCC
Q 042539          258 EVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-PE---FVGQRTALTDLIQRLLEKDPVKRLGYL  333 (412)
Q Consensus       258 E~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-~~---~~~~~~~~~dli~~~L~~dP~~R~~~~  333 (412)
                      |++.+..|+.++|||||||++|+|++|++||.+.+..+.+..+.... +.   ...+++++++||.+||++||.+||   
T Consensus       186 E~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~---  262 (293)
T d1yhwa1         186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRG---  262 (293)
T ss_dssp             HHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSC---
T ss_pred             hhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCc---
Confidence            99999999999999999999999999999999988887777666432 22   234689999999999999999999   


Q ss_pred             CChhhhhcCCCCCC
Q 042539          334 RGACEIKEHVFFKG  347 (412)
Q Consensus       334 ~~~~e~l~h~ff~~  347 (412)
                       +++|+++||||+.
T Consensus       263 -s~~eil~Hp~~~~  275 (293)
T d1yhwa1         263 -SAKELLQHQFLKI  275 (293)
T ss_dssp             -CHHHHTTCGGGGG
T ss_pred             -CHHHHhcCHhhCC
Confidence             6999999999973

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=9.8e-62  Score=472.61  Aligned_cols=261  Identities=30%  Similarity=0.439  Sum_probs=229.1

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      --+++|++++.||+|+||+||+|+++.++    +.||||++.+...    ...+.+.+|+++|++++|||||+++++|.+
T Consensus        23 ~il~~Y~i~~~lG~G~fg~Vy~~~~~~~g----~~vAvK~i~~~~~----~~~~~~~~E~~il~~l~HpnIv~~~~~~~~   94 (350)
T d1koaa2          23 HVLDHYDIHEELGTGAFGVVHRVTERATG----NNFAAKFVMTPHE----SDKETVRKEIQTMSVLRHPTLVNLHDAFED   94 (350)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTT----EEEEEEEECCCSH----HHHHHHHHHHHHHHHTCCTTBCCEEEEEEE
T ss_pred             CCccCeEEEEEEecCcCeEEEEEEECCCC----CEEEEEEEcccch----hhHHHHHHHHHHHHhCCCCCCCcEEEEEEE
Confidence            34789999999999999999999998754    4499999976543    234567889999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc--CCCEEEcccccc
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ--SGHVTLTDFDLS  172 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~--~g~vkL~DFGla  172 (412)
                      ++.+|+|||||.||+|..++... .+.+++.+++.++.||+.||+|||++|||||||||+|||++.  +|.+||+|||+|
T Consensus        95 ~~~~~ivmE~~~gg~L~~~l~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a  173 (350)
T d1koaa2          95 DNEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLT  173 (350)
T ss_dssp             TTEEEEEECCCCSCBHHHHHTCT-TSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTC
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchh
Confidence            99999999999999998877543 346999999999999999999999999999999999999964  588999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+.                                                                ......+.+||+
T Consensus       174 ~~~~----------------------------------------------------------------~~~~~~~~~gT~  189 (350)
T d1koaa2         174 AHLD----------------------------------------------------------------PKQSVKVTTGTA  189 (350)
T ss_dssp             EECC----------------------------------------------------------------TTSCEEEECSCT
T ss_pred             eecc----------------------------------------------------------------cccccceecCcc
Confidence            7652                                                                112234678999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|||||++.+..|+.++|||||||++|+|++|+.||.+.+..+++.++......+     ..+++++++||.+||++||+
T Consensus       190 ~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  269 (350)
T d1koaa2         190 EFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPN  269 (350)
T ss_dssp             TTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGG
T ss_pred             cccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChh
Confidence            9999999999999999999999999999999999999999999999988765443     34789999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCCchh
Q 042539          328 KRLGYLRGACEIKEHVFFKGVRWDL  352 (412)
Q Consensus       328 ~R~~~~~~~~e~l~h~ff~~~~~~~  352 (412)
                      +||    +++|+++||||+..+|..
T Consensus       270 ~R~----t~~eil~hp~~~~~~~~~  290 (350)
T d1koaa2         270 TRM----TIHQALEHPWLTPGNAPG  290 (350)
T ss_dssp             GSC----CHHHHHHSTTTSCTTCCS
T ss_pred             HCc----CHHHHhcCcccCCCCCCC
Confidence            999    799999999999877643

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-62  Score=468.01  Aligned_cols=254  Identities=30%  Similarity=0.484  Sum_probs=208.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .+.|++++.||+|+||+||+|+++.++.    .||||++.+.....   ....+.+|+.+|++++|||||+++++|++++
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~----~vAvK~i~~~~~~~---~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~   80 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQK----LVAIKCIAKKALEG---KEGSMENEIAVLHKIKHPNIVALDDIYESGG   80 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCC----EEEEEEEEC-------------CHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCC----EEEEEEEchHHhhh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            3669999999999999999999987554    49999998765432   2456778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc---cCCCEEEccccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR---QSGHVTLTDFDLSR  173 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~---~~g~vkL~DFGla~  173 (412)
                      .+|+|||||.||+|..++...  +.+++.+++.++.||+.||+|||++||+||||||+|||+.   .+|.+||+|||+|+
T Consensus        81 ~~~lvmE~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~  158 (307)
T d1a06a_          81 HLYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK  158 (307)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC----
T ss_pred             EEEEEEeccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeE
Confidence            999999999999998887654  4599999999999999999999999999999999999995   47899999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ...                                                                ......+.+||+.
T Consensus       159 ~~~----------------------------------------------------------------~~~~~~~~~GT~~  174 (307)
T d1a06a_         159 MED----------------------------------------------------------------PGSVLSTACGTPG  174 (307)
T ss_dssp             ------------------------------------------------------------------------------CT
T ss_pred             Ecc----------------------------------------------------------------CCCeeeeeeeCcc
Confidence            542                                                                1122346689999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~~  328 (412)
                      |||||++.+..|+.++|||||||++|||++|++||.+.+..++..++......+     ..+++++.+||.+||++||++
T Consensus       175 y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  254 (307)
T d1a06a_         175 YVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEK  254 (307)
T ss_dssp             TSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGG
T ss_pred             ccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhH
Confidence            999999999999999999999999999999999999999999988888765433     457899999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||    +++|+++||||++
T Consensus       255 R~----s~~eil~hp~~~~  269 (307)
T d1a06a_         255 RF----TCEQALQHPWIAG  269 (307)
T ss_dssp             SC----CHHHHHHSTTTTS
T ss_pred             Cc----CHHHHhcCHhhCC
Confidence            99    6999999999986

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-62  Score=462.77  Aligned_cols=262  Identities=26%  Similarity=0.438  Sum_probs=226.3

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhh--HHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAK--HEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ++|+++++||+|+||+||+|+++.++.    .||||++++......  ....+.+.+|+++|++++|||||+++++|+++
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~----~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   85 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGL----QYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK   85 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCC----EEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            569999999999999999999987554    499999987654321  12356678899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC----CEEEccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG----HVTLTDFDL  171 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g----~vkL~DFGl  171 (412)
                      +.+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.+|    .+||+|||+
T Consensus        86 ~~~~iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~  163 (293)
T d1jksa_          86 TDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGL  163 (293)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             CEEEEEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhh
Confidence            99999999999999998887654  499999999999999999999999999999999999999877    499999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+...                                                                .+....+.+||
T Consensus       164 a~~~~----------------------------------------------------------------~~~~~~~~~~t  179 (293)
T d1jksa_         164 AHKID----------------------------------------------------------------FGNEFKNIFGT  179 (293)
T ss_dssp             CEECT----------------------------------------------------------------TSCBCSCCCCC
T ss_pred             hhhcC----------------------------------------------------------------CCccccccCCC
Confidence            97652                                                                12233456899


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCC
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP  326 (412)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+.+.++......+     ...++++++||.+||+.||
T Consensus       180 ~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  259 (293)
T d1jksa_         180 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDP  259 (293)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSG
T ss_pred             CcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCCh
Confidence            99999999999999999999999999999999999999999999999888766543     3578999999999999999


Q ss_pred             CccCCCCCChhhhhcCCCCCCCCchhh
Q 042539          327 VKRLGYLRGACEIKEHVFFKGVRWDLL  353 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~h~ff~~~~~~~~  353 (412)
                      ++||    +++|+++||||++.+|...
T Consensus       260 ~~R~----s~~eil~hp~~~~~~~~~~  282 (293)
T d1jksa_         260 KKRM----TIQDSLQHPWIKPKDTQQA  282 (293)
T ss_dssp             GGSC----CHHHHHHSTTTCC------
T ss_pred             hHCc----CHHHHhcCcccCCCChhHh
Confidence            9999    6999999999999888643

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-62  Score=456.65  Aligned_cols=257  Identities=24%  Similarity=0.382  Sum_probs=213.7

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-   94 (412)
                      ..++|++++.||+|+||+||+|+++.++.    .||||++++....  +...+.+.+|+++|++++|||||++++++.+ 
T Consensus         2 r~edy~~~~~iG~G~fg~Vy~~~~~~~~~----~vAvK~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   75 (269)
T d2java1           2 RAEDYEVLYTIGTGSYGRCQKIRRKSDGK----ILVWKELDYGSMT--EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR   75 (269)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCC----EEEEEEECCTTSC--HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC-
T ss_pred             CchhCEEeEEEecCCCeEEEEEEECCCCC----EEEEEEEChhhCC--HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeC
Confidence            36899999999999999999999987554    4999999877543  3345678889999999999999999999865 


Q ss_pred             -CCeEEEEeeccCCCCchhHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHHHcC-----ceeeeCCCCceEEccCCCEEE
Q 042539           95 -DEFLAWAVPYCPGGDLNVLRYKQ--NDRVFSPSVIRFYLSEIICAIEHLHNMG-----IAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        95 -~~~~~lv~e~~~gg~L~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~yLH~~~-----iiHrDlKp~NiLl~~~g~vkL  166 (412)
                       ++.+|+|||||+||+|.+++...  ....+++.+++.++.||+.||+|||++|     ||||||||+|||++.+|.+||
T Consensus        76 ~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl  155 (269)
T d2java1          76 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKL  155 (269)
T ss_dssp             ---CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEE
T ss_pred             CCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEE
Confidence             46799999999999999887542  3456999999999999999999999976     999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+|+.+...                                                               .....
T Consensus       156 ~DFG~a~~~~~~---------------------------------------------------------------~~~~~  172 (269)
T d2java1         156 GDFGLARILNHD---------------------------------------------------------------TSFAK  172 (269)
T ss_dssp             CCHHHHHHC-----------------------------------------------------------------------
T ss_pred             eeccceeecccC---------------------------------------------------------------CCccc
Confidence            999999865311                                                               11233


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-C-CCCChHHHHHHHHhhhh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-F-VGQRTALTDLIQRLLEK  324 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-~-~~~~~~~~dli~~~L~~  324 (412)
                      +.+||+.|||||++.+..|+.++|||||||++|||++|++||.+.+..++..++...... . ...++++.+||.+||+.
T Consensus       173 ~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~  252 (269)
T d2java1         173 AFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNL  252 (269)
T ss_dssp             ---CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             cCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCC
Confidence            568999999999999999999999999999999999999999999999988888765532 2 35789999999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCC
Q 042539          325 DPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ||.+||    +++|+++|||+
T Consensus       253 dp~~Rp----s~~ell~hp~i  269 (269)
T d2java1         253 KDYHRP----SVEEILENPLI  269 (269)
T ss_dssp             SGGGSC----CHHHHHTSTTC
T ss_pred             ChhHCc----CHHHHHhCCcC
Confidence            999999    69999999995

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=2.6e-61  Score=469.97  Aligned_cols=256  Identities=30%  Similarity=0.468  Sum_probs=225.2

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD   95 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~   95 (412)
                      ..++|++++.||+|+||+||+|+++.++.    .||||++++...    .....+.+|+.+|++++|||||+++++|.++
T Consensus        27 ~~d~Y~i~~~lG~G~fg~V~~a~~~~~~~----~vAiK~i~~~~~----~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~   98 (352)
T d1koba_          27 VYDYYDILEELGSGAFGVVHRCVEKATGR----VFVAKFINTPYP----LDKYTVKNEISIMNQLHHPKLINLHDAFEDK   98 (352)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECCSH----HHHHHHHHHHHHHTTCCSTTBCCEEEEEECS
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCC----EEEEEEECCcch----hHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            35889999999999999999999987554    499999976542    2345677899999999999999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEc--cCCCEEEccccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIR--QSGHVTLTDFDLSR  173 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~--~~g~vkL~DFGla~  173 (412)
                      +.+|+|||||.||+|.+++... ...+++.+++.++.||+.||+|||++|||||||||+|||++  .+|.+||+|||+|+
T Consensus        99 ~~~~ivmE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~  177 (352)
T d1koba_          99 YEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLAT  177 (352)
T ss_dssp             SEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCE
T ss_pred             CEEEEEEEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccce
Confidence            9999999999999997665433 34599999999999999999999999999999999999998  56899999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+.                                                                ......+.+||+.
T Consensus       178 ~~~----------------------------------------------------------------~~~~~~~~~gt~~  193 (352)
T d1koba_         178 KLN----------------------------------------------------------------PDEIVKVTTATAE  193 (352)
T ss_dssp             ECC----------------------------------------------------------------TTSCEEEECSSGG
T ss_pred             ecC----------------------------------------------------------------CCCceeeccCccc
Confidence            652                                                                1223346689999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----CCCChHHHHHHHHhhhhCCCc
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~~~~~~~~dli~~~L~~dP~~  328 (412)
                      |||||++.+..|+.++|||||||++|+|++|++||.+.+..+.+.++......+     ...++++++||.+||++||.+
T Consensus       194 y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~  273 (352)
T d1koba_         194 FAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRK  273 (352)
T ss_dssp             GCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGG
T ss_pred             ccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhH
Confidence            999999999999999999999999999999999999999999988888765433     357899999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~~  348 (412)
                      ||    +++|+++||||++.
T Consensus       274 R~----s~~eil~Hp~~~~~  289 (352)
T d1koba_         274 RL----TVHDALEHPWLKGD  289 (352)
T ss_dssp             SC----CHHHHHTSTTTSSC
T ss_pred             Cc----CHHHHhcCHhhCCC
Confidence            99    69999999999874

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-62  Score=471.53  Aligned_cols=260  Identities=25%  Similarity=0.424  Sum_probs=217.7

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLE   93 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~   93 (412)
                      ++.-++|++++.||+|+||+||+|+++.++    +.||+|++++...   ......+.+|+.+|++++|||||+++++|.
T Consensus         2 el~~d~y~~~~~iG~G~fg~V~~~~~~~~~----~~vAiK~i~~~~~---~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~   74 (322)
T d1s9ja_           2 ELKDDDFEKISELGAGNGGVVFKVSHKPSG----LVMARKLIHLEIK---PAIRNQIIRELQVLHECNSPYIVGFYGAFY   74 (322)
T ss_dssp             CCCGGGEEEEEEEECCSSCCEEEEEETTTT----EEEEEEEEECCCC---TTHHHHHHHHGGGGGGCCCTTBCCEEEEEE
T ss_pred             CCCccCCEEEEEEecCCCeEEEEEEECCCC----cEEEEEEEChhhC---HHHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            567899999999999999999999998754    4599999976532   234567788999999999999999999999


Q ss_pred             eCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           94 TDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        94 ~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      +++++|+|||||.||+|..++....  .+++.+++.++.||+.||.|||+ +||+||||||+|||++.+|.+||+|||+|
T Consensus        75 ~~~~~~iVmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla  152 (322)
T d1s9ja_          75 SDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS  152 (322)
T ss_dssp             CSSEEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCC
T ss_pred             ECCEEEEEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCc
Confidence            9999999999999999998887654  49999999999999999999997 59999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+...                                                                 ...+++||+
T Consensus       153 ~~~~~~-----------------------------------------------------------------~~~~~~GT~  167 (322)
T d1s9ja_         153 GQLIDS-----------------------------------------------------------------MANSFVGTR  167 (322)
T ss_dssp             HHHHHH-----------------------------------------------------------------TC---CCSS
T ss_pred             cccCCC-----------------------------------------------------------------ccccccCCc
Confidence            865321                                                                 123568999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHH------------------------------------
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKET------------------------------------  296 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~------------------------------------  296 (412)
                      .|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.                                    
T Consensus       168 ~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (322)
T d1s9ja_         168 SYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPP  247 (322)
T ss_dssp             CCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CC
T ss_pred             cccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccc
Confidence            99999999999999999999999999999999999987543221                                    


Q ss_pred             ------HHHHhcCC-CCC--CCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          297 ------FRNVLMKT-PEF--VGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       297 ------~~~i~~~~-~~~--~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                            ...+.... +..  ...+.+++|||.+||++||++||    |++|+++||||+..+|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~----ta~e~L~Hpf~~~~~~~  307 (322)
T d1s9ja_         248 MAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERA----DLKQLMVHAFIKRSDAE  307 (322)
T ss_dssp             CCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSC----CHHHHHTSHHHHHHHHS
T ss_pred             hhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCc----CHHHHhhCHhhCcCCcc
Confidence                  01111111 111  12468899999999999999999    79999999999876553

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-61  Score=456.53  Aligned_cols=254  Identities=27%  Similarity=0.422  Sum_probs=220.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCe
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEF   97 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~   97 (412)
                      +.|++++.||+|+||+||+|+++.++.    .||||++++....    ..+.+.+|+++|++++|||||++++++.+++.
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~----~vAvK~i~~~~~~----~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~   83 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSV----LAAAKVIDTKSEE----ELEDYMVEIDILASCDHPNIVKLLDAFYYENN   83 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECSSSG----GGGGTHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCe----EEEEEEECcCCHH----HHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCe
Confidence            468999999999999999999987554    4999999765322    23456779999999999999999999999999


Q ss_pred             EEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhc
Q 042539           98 LAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVK  177 (412)
Q Consensus        98 ~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~  177 (412)
                      +|+|||||.||+|..++.... +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+|+....
T Consensus        84 ~~lvmEy~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~  162 (288)
T d2jfla1          84 LWILIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR  162 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHH
T ss_pred             EEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCC
Confidence            999999999999988765543 4599999999999999999999999999999999999999999999999999976532


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccc
Q 042539          178 KTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSP  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  257 (412)
                      ...                                                               ...+.+||+.||||
T Consensus       163 ~~~---------------------------------------------------------------~~~~~~Gt~~y~AP  179 (288)
T d2jfla1         163 TIQ---------------------------------------------------------------RRDSFIGTPYWMAP  179 (288)
T ss_dssp             HHH---------------------------------------------------------------HHTCCCSCCTTCCH
T ss_pred             Ccc---------------------------------------------------------------cccccccccccCCH
Confidence            211                                                               12256899999999


Q ss_pred             eeec-----CCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC----CCCChHHHHHHHHhhhhCCCc
Q 042539          258 EVVR-----GDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF----VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       258 E~l~-----~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~----~~~~~~~~dli~~~L~~dP~~  328 (412)
                      |++.     +..|+.++|||||||++|||++|++||.+.+..+.+.++....+..    ...++++++||.+||+.||.+
T Consensus       180 E~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~  259 (288)
T d2jfla1         180 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDA  259 (288)
T ss_dssp             HHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTT
T ss_pred             HHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhH
Confidence            9984     4567899999999999999999999999998888888888765332    346899999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~  347 (412)
                      ||    +++|+++||||+.
T Consensus       260 R~----t~~ell~hp~~~~  274 (288)
T d2jfla1         260 RW----TTSQLLQHPFVTV  274 (288)
T ss_dssp             SC----CHHHHTTSGGGCC
T ss_pred             Cc----CHHHHhcCcccCC
Confidence            99    6999999999975

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-60  Score=457.10  Aligned_cols=251  Identities=24%  Similarity=0.346  Sum_probs=219.0

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeE
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFL   98 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~   98 (412)
                      .|+++++||+|+||+||+|+++.++    +.||||++.+..... ....+.+.+|+++|++++|||||++++++.+++.+
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~----~~vAvK~i~~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~   90 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNS----EVVAIKKMSYSGKQS-NEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTA   90 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTT----EEEEEEEEECCSSCH-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCC----cEEEEEEEchhhccC-HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEE
Confidence            4999999999999999999998754    459999998765432 34556788899999999999999999999999999


Q ss_pred             EEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhch
Q 042539           99 AWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKK  178 (412)
Q Consensus        99 ~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~  178 (412)
                      |+|||||.||+|..++...  +.+++.+++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|+...  
T Consensus        91 ~iv~E~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~--  166 (309)
T d1u5ra_          91 WLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA--  166 (309)
T ss_dssp             EEEEECCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS--
T ss_pred             EEEEEecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccC--
Confidence            9999999999997655443  459999999999999999999999999999999999999999999999999996431  


Q ss_pred             hhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccce
Q 042539          179 TAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPE  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE  258 (412)
                                                                                       ...+.+||+.|||||
T Consensus       167 -----------------------------------------------------------------~~~~~~GT~~Y~APE  181 (309)
T d1u5ra_         167 -----------------------------------------------------------------PANSFVGTPYWMAPE  181 (309)
T ss_dssp             -----------------------------------------------------------------SBCCCCSCGGGCCHH
T ss_pred             -----------------------------------------------------------------CCCccccCccccCHH
Confidence                                                                             123457999999999


Q ss_pred             eecC---CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHHHHhhhhCCCccCCC
Q 042539          259 VVRG---DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLIQRLLEKDPVKRLGY  332 (412)
Q Consensus       259 ~l~~---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli~~~L~~dP~~R~~~  332 (412)
                      ++.+   ..|+.++|||||||++|||++|..||.+.+..+.+.++......   ....++++++||.+||+.||.+||  
T Consensus       182 ~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp--  259 (309)
T d1u5ra_         182 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRP--  259 (309)
T ss_dssp             HHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSC--
T ss_pred             HHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCc--
Confidence            9975   35899999999999999999999999999888888777765432   234689999999999999999999  


Q ss_pred             CCChhhhhcCCCCCC
Q 042539          333 LRGACEIKEHVFFKG  347 (412)
Q Consensus       333 ~~~~~e~l~h~ff~~  347 (412)
                        +++|+++||||..
T Consensus       260 --t~~ell~Hp~~~~  272 (309)
T d1u5ra_         260 --TSEVLLKHRFVLR  272 (309)
T ss_dssp             --CHHHHTTCHHHHS
T ss_pred             --CHHHHHhCHHhcC
Confidence              6999999999964

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-60  Score=443.97  Aligned_cols=249  Identities=23%  Similarity=0.365  Sum_probs=210.7

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe----C
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET----D   95 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~----~   95 (412)
                      |++.++||+|+||+||+|+++.++.    .||+|++.+....  ....+.+.+|+++|++++|||||+++++|++    +
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~----~va~K~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   84 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTV----EVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGK   84 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCC----EEEEEEEEGGGSC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSC
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCe----EEEEEEEchhhCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccC
Confidence            4788899999999999999987554    4999999776542  2345678889999999999999999999975    3


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeeeCCCCceEEc-cCCCEEEcccccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMG--IAYRDLKPENILIR-QSGHVTLTDFDLS  172 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~--iiHrDlKp~NiLl~-~~g~vkL~DFGla  172 (412)
                      ..+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++|  |+||||||+|||++ .+|.+||+|||+|
T Consensus        85 ~~~~ivmE~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla  162 (270)
T d1t4ha_          85 KCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA  162 (270)
T ss_dssp             EEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             CEEEEEEeCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcc
Confidence            56899999999999998887654  4999999999999999999999999  99999999999997 4799999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +...                                                                 .....+.+||+
T Consensus       163 ~~~~-----------------------------------------------------------------~~~~~~~~GT~  177 (270)
T d1t4ha_         163 TLKR-----------------------------------------------------------------ASFAKAVIGTP  177 (270)
T ss_dssp             GGCC-----------------------------------------------------------------TTSBEESCSSC
T ss_pred             eecc-----------------------------------------------------------------CCccCCcccCc
Confidence            6421                                                                 12234668999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhcCCCC--C-CCCChHHHHHHHHhhhhCCCc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLMKTPE--F-VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~~~~~--~-~~~~~~~~dli~~~L~~dP~~  328 (412)
                      .|||||++.+ .|+.++|||||||++|||++|+.||.+.. ..+++.++......  + ...++++++||.+||++||++
T Consensus       178 ~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  256 (270)
T d1t4ha_         178 EFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDE  256 (270)
T ss_dssp             CCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGG
T ss_pred             cccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhH
Confidence            9999999876 59999999999999999999999998754 45555666544322  1 245789999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFK  346 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~  346 (412)
                      ||    +++|+++||||+
T Consensus       257 R~----s~~ell~Hp~fk  270 (270)
T d1t4ha_         257 RY----SIKDLLNHAFFQ  270 (270)
T ss_dssp             SC----CHHHHHTSGGGC
T ss_pred             Cc----CHHHHhCCcccC
Confidence            99    699999999995

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.9e-59  Score=442.28  Aligned_cols=257  Identities=28%  Similarity=0.453  Sum_probs=224.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh-----hhHHHHHHHHHHHHHHhhcC-CCccceeee
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH-----AKHEAERRARWEIRVLSRLS-HPFLPKLLG   90 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~-----~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~   90 (412)
                      .++|++++.||+|+||+||+|+++.++    +.||||++++....     ........+.+|+.++++++ |||||++++
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~----~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~   77 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTC----KEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKD   77 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCC----CEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            589999999999999999999987754    45999999775432     12335567889999999997 999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      +|.+++++|||||||+||+|.+++..+.  .+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||
T Consensus        78 ~~~~~~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG  155 (277)
T d1phka_          78 TYETNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFG  155 (277)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             ecccCcceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccch
Confidence            9999999999999999999999987654  49999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+.+..                                                                .......+|
T Consensus       156 ~a~~~~~----------------------------------------------------------------~~~~~~~~g  171 (277)
T d1phka_         156 FSCQLDP----------------------------------------------------------------GEKLREVCG  171 (277)
T ss_dssp             TCEECCT----------------------------------------------------------------TCCBCCCCS
T ss_pred             heeEccC----------------------------------------------------------------CCceeeeec
Confidence            9976521                                                                122335689


Q ss_pred             CCCCccceeecC------CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----CCCCChHHHHHHH
Q 042539          251 TEEYVSPEVVRG------DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----FVGQRTALTDLIQ  319 (412)
Q Consensus       251 t~~Y~APE~l~~------~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~~~~dli~  319 (412)
                      |+.|+|||++.+      ..++.++||||+||++|+|++|+.||.+.+..+...++......     ....++++++||.
T Consensus       172 t~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  251 (277)
T d1phka_         172 TPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVS  251 (277)
T ss_dssp             CGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHH
T ss_pred             cCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHH
Confidence            999999999864      34688999999999999999999999999999988888866543     2357899999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          320 RLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +||++||++||    +++|+++||||+.
T Consensus       252 ~~L~~~p~~R~----s~~eil~h~~~~~  275 (277)
T d1phka_         252 RFLVVQPQKRY----TAEEALAHPFFQQ  275 (277)
T ss_dssp             HHCCSSGGGSC----CHHHHTTSGGGCT
T ss_pred             HHccCChhHCc----CHHHHHcCHHHHH
Confidence            99999999999    6999999999985

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-59  Score=452.37  Aligned_cols=253  Identities=25%  Similarity=0.375  Sum_probs=223.5

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|++++.||+|+||+||+|.++.++.    .||||++++...     ....+.+|+++|+.++|||||+++++|++++
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~----~~AiK~i~~~~~-----~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~   74 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKK----TYMAKFVKVKGT-----DQVLVKKEISILNIARHRNILHLHESFESME   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTE----EEEEEEECCCTH-----HHHHHHHHHHHHHHSCCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCc----EEEEEEEcCCcc-----cHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence            5789999999999999999999987554    499999977542     2345678999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC--CCEEEccccccch
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS--GHVTLTDFDLSRN  174 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~--g~vkL~DFGla~~  174 (412)
                      .+|+|||||.||+|..++.... ..+++.+++.++.||+.||+|||++||+||||||+|||++.+  +.+||+|||+++.
T Consensus        75 ~~~lvmE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~  153 (321)
T d1tkia_          75 ELVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred             EEEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhc
Confidence            9999999999999988775432 359999999999999999999999999999999999999855  4899999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      ..                                                                ......+.+||+.|
T Consensus       154 ~~----------------------------------------------------------------~~~~~~~~~~t~~y  169 (321)
T d1tkia_         154 LK----------------------------------------------------------------PGDNFRLLFTAPEY  169 (321)
T ss_dssp             CC----------------------------------------------------------------TTCEEEEEESCGGG
T ss_pred             cc----------------------------------------------------------------cCCccccccccccc
Confidence            42                                                                11223456899999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCC-----CCChHHHHHHHHhhhhCCCcc
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEFV-----GQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~-----~~~~~~~dli~~~L~~dP~~R  329 (412)
                      +|||.+.+..|+.++|||||||++|+|++|.+||.+.+..+.+.++......++     .+++++++||.+||++||.+|
T Consensus       170 ~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R  249 (321)
T d1tkia_         170 YAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSR  249 (321)
T ss_dssp             SCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGS
T ss_pred             ccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHC
Confidence            999999999999999999999999999999999999999999999988765543     578999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q 042539          330 LGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       330 ~~~~~~~~e~l~h~ff~~  347 (412)
                      |    +++|+++||||+.
T Consensus       250 ~----s~~eil~hp~~~~  263 (321)
T d1tkia_         250 M----TASEALQHPWLKQ  263 (321)
T ss_dssp             C----CHHHHHHSHHHHS
T ss_pred             c----CHHHHhcCHhhcc
Confidence            9    6999999999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-59  Score=446.00  Aligned_cols=255  Identities=27%  Similarity=0.427  Sum_probs=209.9

Q ss_pred             eeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhh-hHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEE
Q 042539           21 KALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHA-KHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLA   99 (412)
Q Consensus        21 ~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~   99 (412)
                      +.+++||+|+||+||+|+++.++    +.||||++++..... .....+.+.+|+++|++++|||||+++++|.+++++|
T Consensus         1 E~l~~lG~G~fg~Vy~~~~~~~~----~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~   76 (299)
T d1ua2a_           1 EKLDFLGEGQFATVYKARDKNTN----QIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   76 (299)
T ss_dssp             CEEEEEEEETTEEEEEEECSSCC----SEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             CcceEeccCcCeEEEEEEECCCC----cEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCcee
Confidence            35789999999999999988754    459999997765422 2233456888999999999999999999999999999


Q ss_pred             EEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchh
Q 042539          100 WAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKT  179 (412)
Q Consensus       100 lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~  179 (412)
                      +|||||.|+++..+..  ....+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+|+....  
T Consensus        77 ivmE~~~~~~~~~~~~--~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~--  152 (299)
T d1ua2a_          77 LVFDFMETDLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS--  152 (299)
T ss_dssp             EEEECCSEEHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTS--
T ss_pred             ehhhhhcchHHhhhhh--cccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCC--
Confidence            9999999987754433  345699999999999999999999999999999999999999999999999999975421  


Q ss_pred             hhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcccee
Q 042539          180 AFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEV  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  259 (412)
                                                                                   ......+.+||+.|||||+
T Consensus       153 -------------------------------------------------------------~~~~~~~~~gt~~y~aPE~  171 (299)
T d1ua2a_         153 -------------------------------------------------------------PNRAYTHQVVTRWYRAPEL  171 (299)
T ss_dssp             -------------------------------------------------------------CCCCCCCSCCCCTTCCHHH
T ss_pred             -------------------------------------------------------------CcccccceecChhhccHHH
Confidence                                                                         1122345689999999999


Q ss_pred             ecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CCC---------------------------CCC
Q 042539          260 VRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TPE---------------------------FVG  309 (412)
Q Consensus       260 l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~~---------------------------~~~  309 (412)
                      +.+. .|+.++|||||||++|||++|.+||.+.+..+++.++...  .+.                           +..
T Consensus       172 ~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (299)
T d1ua2a_         172 LFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSA  251 (299)
T ss_dssp             HTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTT
T ss_pred             HccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhccc
Confidence            8754 5799999999999999999999999999988887776531  000                           124


Q ss_pred             CChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       310 ~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                      .++++.|||.+||++||++|+    |++|+++||||++.
T Consensus       252 ~s~~~~dll~~~L~~dP~~R~----sa~e~L~Hp~f~~~  286 (299)
T d1ua2a_         252 AGDDLLDLIQGLFLFNPCARI----TATQALKMKYFSNR  286 (299)
T ss_dssp             CCHHHHHHHHHHHCSSTTTSC----CHHHHHTSGGGTSS
T ss_pred             CCHHHHHHHHHHccCChhhCc----CHHHHhCCHhhCCC
Confidence            568999999999999999999    79999999999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-59  Score=447.56  Aligned_cols=290  Identities=41%  Similarity=0.717  Sum_probs=239.5

Q ss_pred             CCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC-CccceeeeeE
Q 042539           14 SLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-PFLPKLLGSL   92 (412)
Q Consensus        14 ~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h-pnIv~l~~~~   92 (412)
                      .+.+++|+++++||+|+||+||+|++... ..+++.||||++++..........+.+.+|+++|++++| |||+++++++
T Consensus        20 ~~~l~~y~~~~~IG~G~fg~Vy~~~~~~~-~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~   98 (322)
T d1vzoa_          20 KVGIENFELLKVLGTGAYGKVFLVRKISG-HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF   98 (322)
T ss_dssp             CCCGGGEEEEEEEEETTTEEEEEEEECSS-TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE
T ss_pred             ccchhceEEEEEEecCCCeEEEEEEECcc-CCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeee
Confidence            46789999999999999999999988543 235667999999876543333345567779999999976 8999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+...+|++||||.||+|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+|
T Consensus        99 ~~~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a  176 (322)
T d1vzoa_          99 QTETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS  176 (322)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred             ccCCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccch
Confidence            99999999999999999988877655  4889999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+....                                                              .....+..||+
T Consensus       177 ~~~~~~~--------------------------------------------------------------~~~~~~~~g~~  194 (322)
T d1vzoa_         177 KEFVADE--------------------------------------------------------------TERAYDFCGTI  194 (322)
T ss_dssp             EECCGGG--------------------------------------------------------------GGGGCGGGSCC
T ss_pred             hhhcccc--------------------------------------------------------------ccccccccccc
Confidence            7653211                                                              11233567999


Q ss_pred             CCccceeecCCC--CCchhhHHHHHHHHHHHhhCCCCCCCCCHHH----HHHHHhcCCCCC-CCCChHHHHHHHHhhhhC
Q 042539          253 EYVSPEVVRGDG--HEFAVDWWALGILTYEMLYGTTPFRGKNRKE----TFRNVLMKTPEF-VGQRTALTDLIQRLLEKD  325 (412)
Q Consensus       253 ~Y~APE~l~~~~--~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~----~~~~i~~~~~~~-~~~~~~~~dli~~~L~~d  325 (412)
                      .|+|||.+.+..  ++.++|||||||+||+|++|..||.+.+..+    .........+.+ ...++++.+||.+||++|
T Consensus       195 ~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~d  274 (322)
T d1vzoa_         195 EYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKD  274 (322)
T ss_dssp             TTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred             ccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHHHHHcccC
Confidence            999999998754  5889999999999999999999998754333    333333344443 357899999999999999


Q ss_pred             CCccCCCCC-ChhhhhcCCCCCCCCchhhcc-cCCCCCCCCCCCc
Q 042539          326 PVKRLGYLR-GACEIKEHVFFKGVRWDLLTD-VLRPPFIPSREEN  368 (412)
Q Consensus       326 P~~R~~~~~-~~~e~l~h~ff~~~~~~~~~~-~~~pp~~p~~~~~  368 (412)
                      |.+|+++.. |++|+++||||++++|+.+.. ...+|++|..+++
T Consensus       275 P~~R~s~~~~t~~eil~Hpff~~i~~~~l~~~~~~~p~~p~~~~~  319 (322)
T d1vzoa_         275 PKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDE  319 (322)
T ss_dssp             GGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC-
T ss_pred             HHHcCCCCcccHHHHHcCHhhcCCCHHHHHhCCCCcCCCCCCCCC
Confidence            999998643 699999999999999986655 6788999986654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-58  Score=441.25  Aligned_cols=259  Identities=26%  Similarity=0.378  Sum_probs=216.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +|+|+++++||+|+||+||+|+++.++.    .||||++++...  .+.....+.+|+++|++++|||||+++++|++++
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~----~vAvK~i~~~~~--~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~   74 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKLTGE----VVALKKIRLDTE--TEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN   74 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCC----EEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT
T ss_pred             CCCCEeccEEecCcCeEEEEEEECCCCC----EEEEEEEehhhc--ChHHHHHHHHHHHHHHhCCCCcEEEecccccccc
Confidence            5899999999999999999999987554    499999976543  2233567788999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      ++|+|||||.|+.+. ++.......+++.+++.++.||+.||+|||++|||||||||+|||++.++.+||+|||+|+...
T Consensus        75 ~~~iv~e~~~~~~~~-~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~  153 (298)
T d1gz8a_          75 KLYLVFEFLHQDLKK-FMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG  153 (298)
T ss_dssp             EEEEEEECCSEEHHH-HHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHC
T ss_pred             ceeEEEeecCCchhh-hhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceecc
Confidence            999999999766544 4444555679999999999999999999999999999999999999999999999999997542


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      .                                                               ........+||+.|+|
T Consensus       154 ~---------------------------------------------------------------~~~~~~~~~gt~~y~a  170 (298)
T d1gz8a_         154 V---------------------------------------------------------------PVRTYTHEVVTLWYRA  170 (298)
T ss_dssp             C---------------------------------------------------------------CSBCTTCCBCCCTTCC
T ss_pred             C---------------------------------------------------------------Ccccceeecccceeee
Confidence            1                                                               1122345689999999


Q ss_pred             ceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC--C----------------------------
Q 042539          257 PEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT--P----------------------------  305 (412)
Q Consensus       257 PE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~--~----------------------------  305 (412)
                      ||++....+ +.++|||||||++|+|++|+.||.+.+..+.+.++....  +                            
T Consensus       171 pE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (298)
T d1gz8a_         171 PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSK  250 (298)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHH
T ss_pred             hhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhh
Confidence            999887765 889999999999999999999999998888776654210  0                            


Q ss_pred             CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 ~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      ..+..+++++|||.+||++||++||    +++|+++||||+++.
T Consensus       251 ~~~~~s~~~~dll~~mL~~dP~~R~----t~~ell~H~ff~~~~  290 (298)
T d1gz8a_         251 VVPPLDEDGRSLLSQMLHYDPNKRI----SAKAALAHPFFQDVT  290 (298)
T ss_dssp             HSTTCCHHHHHHHHHHTCSSTTTSC----CHHHHHTSGGGTTCC
T ss_pred             hccCCCHHHHHHHHHHccCChhHCc----CHHHHhCCHhhccCC
Confidence            0124568899999999999999999    799999999998764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-59  Score=449.46  Aligned_cols=255  Identities=26%  Similarity=0.426  Sum_probs=210.5

Q ss_pred             CCCCCccCceeee-eeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALK-ILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~-~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      ....-+++|++++ +||+|+||+||+|+++.++.    .||||++++..         .+.+|+.++.++ +|||||+++
T Consensus         5 ~~~~i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~----~vAiK~i~~~~---------~~~~E~~~~~~~~~hpnIv~l~   71 (335)
T d2ozaa1           5 KKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQE----KFALKMLQDCP---------KARREVELHWRASQCPHIVRIV   71 (335)
T ss_dssp             BCSCGGGTEEEEEEEEEECSSCEEEEEEETTTCC----EEEEEEEECSH---------HHHHHHHHHHHHTTSTTBCCEE
T ss_pred             CCCCcccCEEEeeEEeeeccCeEEEEEEECCCCC----EEEEEEECCcH---------HHHHHHHHHHHhcCCCCCCeEE
Confidence            3444578999986 59999999999999987554    49999996532         344689887655 799999999


Q ss_pred             eeEEe----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc---CC
Q 042539           90 GSLET----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ---SG  162 (412)
Q Consensus        90 ~~~~~----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~---~g  162 (412)
                      ++|++    +..+|+|||||+||+|.+++.......|++.+++.++.||+.||+|||++||+||||||+|||++.   .+
T Consensus        72 ~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~  151 (335)
T d2ozaa1          72 DVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA  151 (335)
T ss_dssp             EEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTC
T ss_pred             EEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccc
Confidence            99976    467999999999999999887665567999999999999999999999999999999999999986   46


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      .+||+|||+|+...                                                                ..
T Consensus       152 ~~Kl~DFG~a~~~~----------------------------------------------------------------~~  167 (335)
T d2ozaa1         152 ILKLTDFGFAKETT----------------------------------------------------------------SH  167 (335)
T ss_dssp             CEEECCCTTCEECC----------------------------------------------------------------CC
T ss_pred             cccccccceeeecc----------------------------------------------------------------CC
Confidence            79999999997542                                                                11


Q ss_pred             CCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHH----hcCCCCCC-----CCChH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNV----LMKTPEFV-----GQRTA  313 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i----~~~~~~~~-----~~~~~  313 (412)
                      ....+.+||+.|||||++.+..|+.++|||||||++|+|++|++||.+.+..+....+    ......++     .++++
T Consensus       168 ~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  247 (335)
T d2ozaa1         168 NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEE  247 (335)
T ss_dssp             CCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHH
T ss_pred             CccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHH
Confidence            2234568999999999999999999999999999999999999999886644443333    22333333     46789


Q ss_pred             HHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          314 LTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       314 ~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      +++||.+||++||++||    ++.|+++||||..
T Consensus       248 ~~~li~~~L~~dP~~R~----s~~eil~hp~~~~  277 (335)
T d2ozaa1         248 VKMLIRNLLKTEPTQRM----TITEFMNHPWIMQ  277 (335)
T ss_dssp             HHHHHHHHSCSSTTTSC----CHHHHHHSHHHHT
T ss_pred             HHHHHHHHccCChhHCc----CHHHHHcCHHhhC
Confidence            99999999999999999    6999999999964

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-58  Score=438.22  Aligned_cols=260  Identities=26%  Similarity=0.342  Sum_probs=213.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc---CCCccceeeeeEE
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL---SHPFLPKLLGSLE   93 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l---~hpnIv~l~~~~~   93 (412)
                      -++|+++++||+|+||+||+|++..++   ++.||||++++.....  .....+.+|+.+|+.|   +||||++++++|.
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~---~~~vAiK~i~~~~~~~--~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~   80 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNG---GRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVCT   80 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTT---TEEEEEEEEEEEBCTT--SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCC---CEEEEEEEEehhhccc--hHHHHHHHHHHHHHHHhhcCCCCcceeeeeec
Confidence            479999999999999999999986542   3459999997654321  1122344577777666   7999999999986


Q ss_pred             e-----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           94 T-----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        94 ~-----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                      .     ...+|++||||.|+++... .......+++..++.++.|++.||+|||++|||||||||+|||++.+|.+||+|
T Consensus        81 ~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~d  159 (305)
T d1blxa_          81 VSRTDRETKLTLVFEHVDQDLTTYL-DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD  159 (305)
T ss_dssp             EEECSSEEEEEEEEECCSCBHHHHH-HHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred             ccccccCceEEEEEEeccCCchhhh-hhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecc
Confidence            3     3478999999998877544 334445699999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+++....                                                                .....+.
T Consensus       160 fg~~~~~~~----------------------------------------------------------------~~~~~~~  175 (305)
T d1blxa_         160 FGLARIYSF----------------------------------------------------------------QMALTSV  175 (305)
T ss_dssp             CCSCCCCCG----------------------------------------------------------------GGGGCCC
T ss_pred             hhhhhhhcc----------------------------------------------------------------cccCCCc
Confidence            999875421                                                                1123456


Q ss_pred             ccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC---------------------
Q 042539          249 VGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP---------------------  305 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~---------------------  305 (412)
                      +||+.|||||++.+..|+.++|||||||++|||++|++||.+.+..+++.+++..  .+                     
T Consensus       176 ~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (305)
T d1blxa_         176 VVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSA  255 (305)
T ss_dssp             CCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCC
T ss_pred             ccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccc
Confidence            8999999999999999999999999999999999999999999988887776531  00                     


Q ss_pred             -----CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          306 -----EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       306 -----~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                           .....++.++|||.+||++||++||    +++|+++||||+++++
T Consensus       256 ~~~~~~~~~~s~~~~dli~~mL~~dP~~R~----sa~e~L~Hpff~~i~~  301 (305)
T d1blxa_         256 QPIEKFVTDIDELGKDLLLKCLTFNPAKRI----SAYSALSHPYFQDLER  301 (305)
T ss_dssp             CCGGGTCCSCCHHHHHHHHHHSCSSTTTSC----CHHHHHTSGGGTTCCC
T ss_pred             cchhhccccCCHHHHHHHHHHCcCChhHCc----CHHHHhcChhhcCchh
Confidence                 0124568899999999999999999    6999999999998865

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-58  Score=430.98  Aligned_cols=252  Identities=26%  Similarity=0.379  Sum_probs=209.2

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhH--HHHHHHHHHHHHHhhcC--CCccceeeeeE
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKH--EAERRARWEIRVLSRLS--HPFLPKLLGSL   92 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~~~Ei~il~~l~--hpnIv~l~~~~   92 (412)
                      -++|++.++||+|+||+||+|+++.++.    .||||++++.......  ....++.+|+.+|++++  |||||+++++|
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~----~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~   78 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNL----PVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF   78 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCC----EEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEE
Confidence            3689999999999999999999987554    4999999876542211  11233556999999997  89999999999


Q ss_pred             EeCCeEEEEeeccCC-CCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccC-CCEEEcccc
Q 042539           93 ETDEFLAWAVPYCPG-GDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQS-GHVTLTDFD  170 (412)
Q Consensus        93 ~~~~~~~lv~e~~~g-g~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~-g~vkL~DFG  170 (412)
                      .+++.+|+||||+.| +++..++....  .+++.+++.++.||+.||+|||++||+||||||+|||++.+ +.+||+|||
T Consensus        79 ~~~~~~~lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG  156 (273)
T d1xwsa_          79 ERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG  156 (273)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             eeCCeEEEEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccc
Confidence            999999999999987 56666655543  59999999999999999999999999999999999999855 799999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+...                                                                 .....+.+|
T Consensus       157 ~a~~~~-----------------------------------------------------------------~~~~~~~~G  171 (273)
T d1xwsa_         157 SGALLK-----------------------------------------------------------------DTVYTDFDG  171 (273)
T ss_dssp             TCEECC-----------------------------------------------------------------SSCBCCCCS
T ss_pred             cceecc-----------------------------------------------------------------ccccccccc
Confidence            996431                                                                 112345689


Q ss_pred             CCCCccceeecCCCC-CchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-CCCChHHHHHHHHhhhhCCCc
Q 042539          251 TEEYVSPEVVRGDGH-EFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       251 t~~Y~APE~l~~~~~-~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-~~~~~~~~dli~~~L~~dP~~  328 (412)
                      |+.|||||++.+..+ +.++|||||||++|||++|+.||.+.+      ++......+ ..+++++++||.+||++||++
T Consensus       172 T~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~i~~~~~~~~~~~s~~~~~li~~~L~~dp~~  245 (273)
T d1xwsa_         172 TRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFRQRVSSECQHLIRWCLALRPSD  245 (273)
T ss_dssp             CGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCCCCCSSCCCHHHHHHHHHHTCSSGGG
T ss_pred             CCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch------HHhhcccCCCCCCCHHHHHHHHHHccCCHhH
Confidence            999999999988775 678999999999999999999998632      233333333 457899999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCC
Q 042539          329 RLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff~~~~  349 (412)
                      ||    +++|+++||||+++.
T Consensus       246 R~----s~~eil~hp~~~~~~  262 (273)
T d1xwsa_         246 RP----TFEEIQNHPWMQDVL  262 (273)
T ss_dssp             SC----CHHHHHTSGGGSSCC
T ss_pred             Cc----CHHHHhcCHhhCCCC
Confidence            99    699999999998754

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-57  Score=428.61  Aligned_cols=256  Identities=20%  Similarity=0.272  Sum_probs=217.0

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      ..+++..++|++++.||+|+||+||+|+++.++.    .||||+++++...     .+.+.+|+++|++++|||||++++
T Consensus        10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~----~vAvK~i~~~~~~-----~~~~~~E~~il~~l~HpnIv~~~~   80 (287)
T d1opja_          10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSL----TVAVKTLKEDTME-----VEEFLKEAAVMKEIKHPNLVQLLG   80 (287)
T ss_dssp             CTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTE----EEEEEECCTTCSC-----HHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccEecHHHeEEeeEEeeCCCeEEEEEEECCCCe----EEEEEEECCccch-----HHHHHHHHHHHHhCCCCCEecCCc
Confidence            4578999999999999999999999999987544    4999999765432     345778999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                      ++.+++.+|+|||||.+|+|..++.......+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||
T Consensus        81 ~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG  160 (287)
T d1opja_          81 VCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFG  160 (287)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             cEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEcccc
Confidence            99999999999999999999988877666779999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+.....                                                              .........|
T Consensus       161 ~a~~~~~~--------------------------------------------------------------~~~~~~~~~g  178 (287)
T d1opja_         161 LSRLMTGD--------------------------------------------------------------TYTAHAGAKF  178 (287)
T ss_dssp             CTTTCCSS--------------------------------------------------------------SSEEETTEEE
T ss_pred             ceeecCCC--------------------------------------------------------------Cceeeccccc
Confidence            99764211                                                              0011123458


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHhcCC-C-CCCCCChHHHHHHHHhhhhCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVLMKT-P-EFVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g-~~Pf~~~~~~~~~~~i~~~~-~-~~~~~~~~~~dli~~~L~~dP~  327 (412)
                      |+.|||||++.+..|+.++|||||||++|||++| .+||.+.+..+.+..+.... + ....+++++.+||.+||+.||+
T Consensus       179 ~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~  258 (287)
T d1opja_         179 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPS  258 (287)
T ss_dssp             CGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHh
Confidence            9999999999999999999999999999999995 55566677666665554432 2 2345789999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q 042539          328 KRLGYLRGACEIKE  341 (412)
Q Consensus       328 ~R~~~~~~~~e~l~  341 (412)
                      +||    +++++++
T Consensus       259 ~Rp----s~~ei~~  268 (287)
T d1opja_         259 DRP----SFAEIHQ  268 (287)
T ss_dssp             GSC----CHHHHHH
T ss_pred             HCc----CHHHHHH
Confidence            999    6888865

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-56  Score=423.40  Aligned_cols=254  Identities=26%  Similarity=0.405  Sum_probs=210.5

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      -++|++++.||+|+||+||+|+++.++.    .||||++++.... ......++.+|+++++.++|||||++++++.+.+
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~----~vAiK~i~~~~~~-~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~   80 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHR----DVAVKVLRADLAR-DPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET   80 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTE----EEEEEEECSTTTT-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEC
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCC----EEEEEEEchhhcc-CHHHHHHHHHHHHHHHhcCCCCCCcccceeeecc
Confidence            4679999999999999999999987554    4999999876543 3445667889999999999999999999998654


Q ss_pred             ----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           97 ----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        97 ----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                          .+|+|||||.||+|..++....  .+++.+++.++.||+.||+|||++|||||||||+|||++.++.++|+|||.+
T Consensus        81 ~~~~~~~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~  158 (277)
T d1o6ya_          81 PAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIA  158 (277)
T ss_dssp             SSSEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTC
T ss_pred             CCCceEEEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhh
Confidence                4899999999999988776654  4999999999999999999999999999999999999999999999999998


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +......                                                            .......+.+||+
T Consensus       159 ~~~~~~~------------------------------------------------------------~~~~~~~~~~Gt~  178 (277)
T d1o6ya_         159 RAIADSG------------------------------------------------------------NSVTQTAAVIGTA  178 (277)
T ss_dssp             EECC----------------------------------------------------------------------------
T ss_pred             hhhcccc------------------------------------------------------------ccccccccccCcc
Confidence            7542111                                                            1122344678999


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCC-----CCCCChHHHHHHHHhhhhCCC
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPE-----FVGQRTALTDLIQRLLEKDPV  327 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~-----~~~~~~~~~dli~~~L~~dP~  327 (412)
                      .|||||++.+..++.++|||||||++|||++|++||.+.+..+.+.+++...+.     ...+++++.+||.+||++||.
T Consensus       179 ~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~  258 (277)
T d1o6ya_         179 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPE  258 (277)
T ss_dssp             TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGG
T ss_pred             cccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHh
Confidence            999999999999999999999999999999999999999988888887766543     246789999999999999999


Q ss_pred             ccCCCCCChhhhh
Q 042539          328 KRLGYLRGACEIK  340 (412)
Q Consensus       328 ~R~~~~~~~~e~l  340 (412)
                      +||+   ++++++
T Consensus       259 ~R~~---sa~~l~  268 (277)
T d1o6ya_         259 NRYQ---TAAEMR  268 (277)
T ss_dssp             GSCS---SHHHHH
T ss_pred             HCHh---HHHHHH
Confidence            9995   566665

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4e-57  Score=428.46  Aligned_cols=255  Identities=25%  Similarity=0.400  Sum_probs=212.3

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|+++++||+|+||+||+|+++     +++.||||++++....  ....+++.+|+.+|++++|||||+++++|.+++
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~-----~~~~vAvK~i~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~   73 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNN-----YGETFALKKIRLEKED--EGIPSTTIREISILKELKHSNIVKLYDVIHTKK   73 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-----TSCEEEEEEECCSSGG--GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS
T ss_pred             CCCceeccEEecCCCcEEEEEEeC-----CCCEEEEEEEehhhcC--hHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC
Confidence            589999999999999999999985     3345999999776432  233567778999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+|++||++.|+++..+..  ..+.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|....
T Consensus        74 ~~~i~~e~~~~~~~~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~  151 (286)
T d1ob3a_          74 RLVLVFEHLDQDLKKLLDV--CEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFG  151 (286)
T ss_dssp             CEEEEEECCSEEHHHHHHT--STTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHC
T ss_pred             ceeEEEEeehhhhHHHHHh--hcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecc
Confidence            9999999998887765543  34569999999999999999999999999999999999999999999999999997652


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               .......+||+.|+|
T Consensus       152 ~~---------------------------------------------------------------~~~~~~~~~~~~y~~  168 (286)
T d1ob3a_         152 IP---------------------------------------------------------------VRKYTHEIVTLWYRA  168 (286)
T ss_dssp             C------------------------------------------------------------------------CCCTTCC
T ss_pred             cC---------------------------------------------------------------ccccceecccchhhh
Confidence            11                                                               112234578999999


Q ss_pred             ceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--CC----------------------------
Q 042539          257 PEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--TP----------------------------  305 (412)
Q Consensus       257 PE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~~----------------------------  305 (412)
                      ||.+.+.. ++.++|||||||++|||++|++||.+.+..+++.++...  .+                            
T Consensus       169 pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (286)
T d1ob3a_         169 PDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWES  248 (286)
T ss_dssp             HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGG
T ss_pred             HHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhh
Confidence            99997654 589999999999999999999999998888777665421  00                            


Q ss_pred             CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          306 EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       306 ~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                      .....+++++|||.+||++||++|+    +++|+++||||++
T Consensus       249 ~~~~~s~~~~dli~~~L~~dP~~R~----s~~ell~Hp~f~~  286 (286)
T d1ob3a_         249 FLKGLDESGIDLLSKMLKLDPNQRI----TAKQALEHAYFKE  286 (286)
T ss_dssp             TCCSCCHHHHHHHHHHTCSSTTTSC----CHHHHHTSGGGGC
T ss_pred             hcccCCHHHHHHHHHHccCChhHCc----CHHHHhcCcccCc
Confidence            0234568899999999999999999    6999999999974

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-57  Score=434.36  Aligned_cols=263  Identities=21%  Similarity=0.290  Sum_probs=217.2

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCC-CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPT-ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~-~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      .+++..++|+++++||+|+||+||+|+++..+.. ....||+|++.+...   ......+.+|+.+|.++ +|||||+++
T Consensus        31 kwei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~HpnIv~l~  107 (325)
T d1rjba_          31 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---SSEREALMSELKMMTQLGSHENIVNLL  107 (325)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC---HHHHHHHHHHHHHHHHhcCCCcEeEEE
Confidence            3567789999999999999999999998765432 334589999865432   23445677899999998 799999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCC---------------------CCCCHHHHHHHHHHHHHHHHHHHHcCcee
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQND---------------------RVFSPSVIRFYLSEIICAIEHLHNMGIAY  148 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~---------------------~~l~~~~~~~~~~qi~~aL~yLH~~~iiH  148 (412)
                      +++.+.+.+|+|||||+||+|..++.....                     ..+++.+++.++.||+.||+|||++||||
T Consensus       108 ~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiH  187 (325)
T d1rjba_         108 GACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVH  187 (325)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             EEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeee
Confidence            999999999999999999999998865432                     35899999999999999999999999999


Q ss_pred             eeCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccC
Q 042539          149 RDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSAR  228 (412)
Q Consensus       149 rDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
                      |||||+|||++.+|++||+|||+|+......                                                 
T Consensus       188 RDlKp~Nill~~~~~~Kl~DFGla~~~~~~~-------------------------------------------------  218 (325)
T d1rjba_         188 RDLAARNVLVTHGKVVKICDFGLARDIMSDS-------------------------------------------------  218 (325)
T ss_dssp             TTCSGGGEEEETTTEEEECCCGGGSCGGGCT-------------------------------------------------
T ss_pred             ccCchhccccccCCeEEEeeccccccccCCC-------------------------------------------------
Confidence            9999999999999999999999997653211                                                 


Q ss_pred             CCCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--
Q 042539          229 VSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--  305 (412)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--  305 (412)
                                  ......+.+||+.|||||++.+..|+.++|||||||++|||++ |++||.+.+..+.+.+++....  
T Consensus       219 ------------~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~  286 (325)
T d1rjba_         219 ------------NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKM  286 (325)
T ss_dssp             ------------TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCC
T ss_pred             ------------ceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC
Confidence                        1112235678999999999999999999999999999999997 8999999776666666665432  


Q ss_pred             -CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          306 -EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       306 -~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                       ....+++++++||.+||+.||++||    +++|+++|
T Consensus       287 ~~p~~~~~~l~~li~~cl~~dP~~RP----t~~ei~~~  320 (325)
T d1rjba_         287 DQPFYATEEIYIIMQSCWAFDSRKRP----SFPNLTSF  320 (325)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHcCCChhHCc----CHHHHHHH
Confidence             2245689999999999999999999    68998875

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-57  Score=424.46  Aligned_cols=255  Identities=21%  Similarity=0.290  Sum_probs=207.0

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .+++..++|++++.||+|+||+||+|+.+.       .||||+++......  ...+.+.+|+.+|++++|||||+++++
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~~-------~vAvK~~~~~~~~~--~~~~~~~~E~~~l~~l~HpnIv~~~~~   72 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWHG-------DVAVKMLNVTAPTP--QQLQAFKNEVGVLRKTRHVNILLFMGY   72 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESSS-------EEEEEECCCSSCCT--THHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEECC-------EEEEEEEEcccCCH--HHHHHHHHHHHHHHhCCCCCEeeeeEE
Confidence            357888999999999999999999997542       29999997654322  345678889999999999999999997


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .. ++.+|+|||||.||+|.+++.... ..+++.++..++.||+.||+|||++|||||||||+|||++.++.+||+|||+
T Consensus        73 ~~-~~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGl  150 (276)
T d1uwha_          73 ST-APQLAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGL  150 (276)
T ss_dssp             EC-SSSCEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCC
T ss_pred             Ee-ccEEEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccc
Confidence            64 457899999999999988876543 4699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+......                                                             ......+.+||
T Consensus       151 a~~~~~~~-------------------------------------------------------------~~~~~~~~~gt  169 (276)
T d1uwha_         151 ATVKSRWS-------------------------------------------------------------GSHQFEQLSGS  169 (276)
T ss_dssp             SCC-------------------------------------------------------------------------CCCC
T ss_pred             eeeccccC-------------------------------------------------------------CcccccccccC
Confidence            97652110                                                             11223456899


Q ss_pred             CCCccceeecCC---CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---CC----CCCCChHHHHHHHHh
Q 042539          252 EEYVSPEVVRGD---GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT---PE----FVGQRTALTDLIQRL  321 (412)
Q Consensus       252 ~~Y~APE~l~~~---~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~---~~----~~~~~~~~~dli~~~  321 (412)
                      +.|||||++.+.   .|+.++|||||||++|||+||+.||.+.+.......++...   +.    ...+++++.+||.+|
T Consensus       170 ~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~c  249 (276)
T d1uwha_         170 ILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAEC  249 (276)
T ss_dssp             GGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHH
T ss_pred             cccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHH
Confidence            999999999753   47999999999999999999999999876555444443322   11    235678999999999


Q ss_pred             hhhCCCccCCCCCChhhhhcC
Q 042539          322 LEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       322 L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      |..||++||    ++++++++
T Consensus       250 l~~dp~~RP----t~~~il~~  266 (276)
T d1uwha_         250 LKKKRDERP----LFPQILAS  266 (276)
T ss_dssp             TCSSGGGSC----CHHHHHHH
T ss_pred             cCCCHhHCc----CHHHHHHH
Confidence            999999999    68888864

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-56  Score=424.16  Aligned_cols=262  Identities=21%  Similarity=0.287  Sum_probs=209.2

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .++..++|++.+.||+|+||+||+|+++.++. ....||||.+.....   ....+.+.+|+++|++++|||||++++++
T Consensus        21 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~g~~   96 (299)
T d1jpaa_          21 KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGK-REIFVAIKTLKSGYT---EKQRRDFLSEASIMGQFDHPNVIHLEGVV   96 (299)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECC----CCEEEEEEECCSSCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             hhhChhhcEEeeEEeeCCCeEEEEEEEeCCCC-EEEEEEEEEECcccC---HHHHHHHHHHHHHHHhCCCCCCccEEEEE
Confidence            45778999999999999999999999876543 234588998865432   33456788999999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+++.+|+|||||.||+|..++... .+.+++.++..++.||+.||+|||++||+||||||+|||++.+|.+||+|||+|
T Consensus        97 ~~~~~~~iv~Ey~~~g~L~~~~~~~-~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla  175 (299)
T d1jpaa_          97 TKSTPVMIITEFMENGSLDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLS  175 (299)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---
T ss_pred             eeCCEEEEEEEecCCCcceeeeccc-cCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccc
Confidence            9999999999999999998876653 346999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+......                                                          ..........||+
T Consensus       176 ~~~~~~~~~----------------------------------------------------------~~~~~~~~~~~t~  197 (299)
T d1jpaa_         176 RFLEDDTSD----------------------------------------------------------PTYTSALGGKIPI  197 (299)
T ss_dssp             ------------------------------------------------------------------------------CG
T ss_pred             eEccCCCCc----------------------------------------------------------ceeeecccccCCc
Confidence            866322110                                                          0011112346899


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|||||++.+..++.++|||||||++|||+| |++||.+.+..+....+..+.  +....+++++.+||.+||+.||++|
T Consensus       198 ~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~R  277 (299)
T d1jpaa_         198 RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHR  277 (299)
T ss_dssp             GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTS
T ss_pred             cccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHC
Confidence            9999999999999999999999999999998 899999999888888776543  3344678999999999999999999


Q ss_pred             CCCCCChhhhhc
Q 042539          330 LGYLRGACEIKE  341 (412)
Q Consensus       330 ~~~~~~~~e~l~  341 (412)
                      |    ++.++++
T Consensus       278 P----s~~ei~~  285 (299)
T d1jpaa_         278 P----KFGQIVN  285 (299)
T ss_dssp             C----CHHHHHH
T ss_pred             c----CHHHHHH
Confidence            9    5777765

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-56  Score=421.32  Aligned_cols=263  Identities=19%  Similarity=0.255  Sum_probs=219.7

Q ss_pred             CCCCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccc
Q 042539            7 PQPQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLP   86 (412)
Q Consensus         7 ~~~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv   86 (412)
                      |.....+++..++|++++.||+|+||+||+|+++.     +..||||++++....     .+.+.+|++++++++|||||
T Consensus         2 p~~~~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~-----~~~vAvK~~~~~~~~-----~~~~~~E~~~l~~l~HpnIv   71 (272)
T d1qpca_           2 PWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNG-----HTKVAVKSLKQGSMS-----PDAFLAEANLMKQLQHQRLV   71 (272)
T ss_dssp             CTTTCTTBCCGGGEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTSSC-----HHHHHHHHHHHHHCCCTTBC
T ss_pred             CCCCCCeecCHHHeEEeEEEecCCCcEEEEEEECC-----CCEEEEEEEccCcCC-----HHHHHHHHHHHHhCCCCCEe
Confidence            33455677888999999999999999999999752     345999999765432     24577899999999999999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEE
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTL  166 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL  166 (412)
                      ++++++. ++.+|+|||||.+|+|..++.......+++.++..++.||+.||.|||++||+||||||+|||++.++.+||
T Consensus        72 ~~~g~~~-~~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl  150 (272)
T d1qpca_          72 RLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKI  150 (272)
T ss_dssp             CEEEEEC-SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEE
T ss_pred             EEEeeec-cCCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceee
Confidence            9999875 456799999999999987766555446999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCc
Q 042539          167 TDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSN  246 (412)
Q Consensus       167 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (412)
                      +|||+|+.+....                                                              .....
T Consensus       151 ~DFGla~~~~~~~--------------------------------------------------------------~~~~~  168 (272)
T d1qpca_         151 ADFGLARLIEDNE--------------------------------------------------------------YTARE  168 (272)
T ss_dssp             CCCTTCEECSSSC--------------------------------------------------------------EECCT
T ss_pred             ccccceEEccCCc--------------------------------------------------------------ccccc
Confidence            9999998652110                                                              01123


Q ss_pred             ccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhh
Q 042539          247 SFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLE  323 (412)
Q Consensus       247 ~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~  323 (412)
                      ...||+.|||||++.+..++.++|||||||++|||+| |.+||...+..+.+..+....  .....+++++.+||.+||+
T Consensus       169 ~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~  248 (272)
T d1qpca_         169 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWK  248 (272)
T ss_dssp             TCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             ccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcC
Confidence            4578999999999999889999999999999999998 577788888888888877643  2234578999999999999


Q ss_pred             hCCCccCCCCCChhhhhc--CCCCC
Q 042539          324 KDPVKRLGYLRGACEIKE--HVFFK  346 (412)
Q Consensus       324 ~dP~~R~~~~~~~~e~l~--h~ff~  346 (412)
                      .||++||    +++++++  |+||.
T Consensus       249 ~~P~~Rp----t~~ei~~~L~~~ft  269 (272)
T d1qpca_         249 ERPEDRP----TFDYLRSVLEDFFT  269 (272)
T ss_dssp             SSGGGSC----CHHHHHHHHHHHHH
T ss_pred             CCHhHCc----CHHHHHHHhhhhhh
Confidence            9999999    6889887  66664

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-55  Score=413.66  Aligned_cols=251  Identities=19%  Similarity=0.280  Sum_probs=206.0

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|++++.||+|+||+||+|+++.     +..||||++++....     .+.+.+|++++++++|||||++++++.+
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~~-----~~~vAvK~i~~~~~~-----~~~~~~E~~~l~~l~HpnIv~~~g~~~~   71 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAMS-----EEDFIEEAEVMMKLSHPKLVQLYGVCLE   71 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEETT-----TEEEEEEECCSSSSC-----HHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEECC-----CCEEEEEEECCCcCc-----HHHHHHHHHHHHhcCCCCcccccceecc
Confidence            456799999999999999999999863     234999999765432     2356789999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.+|+|||||.+|+|..++... ...+++..+..++.||+.||+|||+++|+||||||+|||++.++.+||+|||+|+.
T Consensus        72 ~~~~~lv~E~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          72 QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             CCceEEEEEecCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchhee
Confidence            99999999999999998877654 34589999999999999999999999999999999999999999999999999976


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                              ........||+.|
T Consensus       151 ~~~~~--------------------------------------------------------------~~~~~~~~gt~~y  168 (263)
T d1sm2a_         151 VLDDQ--------------------------------------------------------------YTSSTGTKFPVKW  168 (263)
T ss_dssp             ----------------------------------------------------------------------------CTTS
T ss_pred             ccCCC--------------------------------------------------------------ceeecceecCccc
Confidence            53211                                                              1112245799999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      ||||++.+..|+.++|||||||++|||+| |.+||...+..+.+..+..+..  .....++++.+||.+||+.||++|| 
T Consensus       169 ~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rp-  247 (263)
T d1sm2a_         169 ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRP-  247 (263)
T ss_dssp             CCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSC-
T ss_pred             CChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCc-
Confidence            99999999999999999999999999998 6888888888888887776532  2234678999999999999999999 


Q ss_pred             CCCChhhhhcC
Q 042539          332 YLRGACEIKEH  342 (412)
Q Consensus       332 ~~~~~~e~l~h  342 (412)
                         +++++++|
T Consensus       248 ---s~~~il~~  255 (263)
T d1sm2a_         248 ---AFSRLLRQ  255 (263)
T ss_dssp             ---CHHHHHHH
T ss_pred             ---CHHHHHHH
Confidence               68898874

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-56  Score=432.00  Aligned_cols=251  Identities=25%  Similarity=0.443  Sum_probs=208.3

Q ss_pred             CceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe----
Q 042539           19 NLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET----   94 (412)
Q Consensus        19 ~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~----   94 (412)
                      +|+.+++||+|+||+||+|+++.++.    .||||+++++...        ..+|+++|++++|+|||+++++|..    
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~----~vAiK~i~~~~~~--------~~~Ei~il~~l~h~niv~~~~~~~~~~~~   88 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGE----LVAIKKVLQDKRF--------KNRELQIMRKLDHCNIVRLRYFFYSSGEK   88 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCC----EEEEEEEECCSSS--------CCHHHHHHHHCCCTTBCCEEEEEEEC--C
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCC----EEEEEEECccchH--------HHHHHHHHHhcCCCCCCcEEEEEEecCcc
Confidence            79999999999999999999987554    4999999765422        2259999999999999999999853    


Q ss_pred             --CCeEEEEeeccCCCCchhHHH-hhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEcccc
Q 042539           95 --DEFLAWAVPYCPGGDLNVLRY-KQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFD  170 (412)
Q Consensus        95 --~~~~~lv~e~~~gg~L~~~~~-~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFG  170 (412)
                        ..++|+|||||.++.+..+.. ......+++.+++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||
T Consensus        89 ~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG  168 (350)
T d1q5ka_          89 KDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFG  168 (350)
T ss_dssp             CSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCT
T ss_pred             CCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEeccc
Confidence              236899999998776554433 23445699999999999999999999999999999999999999875 89999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+.+.                                                                ......+.+|
T Consensus       169 ~a~~~~----------------------------------------------------------------~~~~~~~~~g  184 (350)
T d1q5ka_         169 SAKQLV----------------------------------------------------------------RGEPNVSYIC  184 (350)
T ss_dssp             TCEECC----------------------------------------------------------------TTSCCCSCCS
T ss_pred             chhhcc----------------------------------------------------------------CCcccccccc
Confidence            997542                                                                1223345689


Q ss_pred             CCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--C------------------C----
Q 042539          251 TEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--T------------------P----  305 (412)
Q Consensus       251 t~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~------------------~----  305 (412)
                      |+.|+|||.+.+. .|+.++|||||||++|||++|++||.+.+..+.+.++...  .                  +    
T Consensus       185 t~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  264 (350)
T d1q5ka_         185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKA  264 (350)
T ss_dssp             CTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCC
T ss_pred             cccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhcccccccc
Confidence            9999999998764 6899999999999999999999999998887776665421  0                  0    


Q ss_pred             ------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 ------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 ------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                            .....++++.|||.+||++||++|+    |+.|+++||||+++.
T Consensus       265 ~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~----ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         265 HPWTKVFRPRTPPEAIALCSRLLEYTPTARL----TPLEACAHSFFDELR  310 (350)
T ss_dssp             CCGGGTSCTTSCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGGGGG
T ss_pred             CchhhhcccCCCHHHHHHHHHHccCChhHCc----CHHHHhcCHhhcccc
Confidence                  1134578999999999999999999    699999999998653

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-56  Score=430.32  Aligned_cols=255  Identities=25%  Similarity=0.419  Sum_probs=208.6

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      -++|+++++||+|+||+||+|.++.++.    .||||++++...  .....+.+.+|+++|++++|||||+++++|...+
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~----~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~   90 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGA----KVAIKKLYRPFQ--SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDE   90 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCC----EEEEEECSSTTS--SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCS
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCC----EEEEEEEchhhc--ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCc
Confidence            5799999999999999999999987554    499999976543  3345677889999999999999999999997654


Q ss_pred             ------eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           97 ------FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        97 ------~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                            .+|+||||| |++|..+...   +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus        91 ~~~~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg  166 (346)
T d1cm8a_          91 TLDDFTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFG  166 (346)
T ss_dssp             STTTCCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             cccccceEEEEEecc-cccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhccccccccccccc
Confidence                  579999999 6677665543   349999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+...                                                                  ......+|
T Consensus       167 ~a~~~~------------------------------------------------------------------~~~~~~~~  180 (346)
T d1cm8a_         167 LARQAD------------------------------------------------------------------SEMTGYVV  180 (346)
T ss_dssp             TCEECC------------------------------------------------------------------SSCCSSCS
T ss_pred             ceeccC------------------------------------------------------------------Cccccccc
Confidence            997542                                                                  11235679


Q ss_pred             CCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------------------C-
Q 042539          251 TEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKT-----------------------P-  305 (412)
Q Consensus       251 t~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~-----------------------~-  305 (412)
                      |+.|+|||++.+. .++.++|||||||++|+|++|++||.+.+....+..+....                       + 
T Consensus       181 t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (346)
T d1cm8a_         181 TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPE  260 (346)
T ss_dssp             CGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCC
T ss_pred             cccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCc
Confidence            9999999999875 46899999999999999999999999988776654443210                       0 


Q ss_pred             --------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          306 --------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       306 --------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                              .+...++++.|||.+||+.||.+||    |++|+++||||+++.+.
T Consensus       261 ~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~----ta~eiL~Hp~f~~~~~~  310 (346)
T d1cm8a_         261 LEKKDFASILTNASPLAVNLLEKMLVLDAEQRV----TAGEALAHPYFESLHDT  310 (346)
T ss_dssp             CCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSC----CHHHHHHSGGGTTTC--
T ss_pred             ccccchHHhccCCCHHHHHHHHHHCcCChhHCc----CHHHHhcChhhCcCCCc
Confidence                    1235678999999999999999999    79999999999987654

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.3e-55  Score=426.08  Aligned_cols=252  Identities=24%  Similarity=0.396  Sum_probs=207.4

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEe
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLET   94 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~   94 (412)
                      ..++|+++++||+|+||+||+|+++.++    +.||||++++..       .+++.+|+++|++++ ||||++++++|..
T Consensus        33 ~~d~y~i~~~LG~G~fg~V~~a~~~~~~----~~vAiK~i~~~~-------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~  101 (328)
T d3bqca1          33 NQDDYQLVRKLGRGKYSEVFEAINITNN----EKVVVKILKPVK-------KKKIKREIKILENLRGGPNIITLADIVKD  101 (328)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTT----EEEEEEEECSSC-------HHHHHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             CCcCeEEEEEEecCcCeEEEEEEECCCC----CEEEEEEECHHH-------HHHHHHHHHHHHhccCCCCCcEEEEEEEe
Confidence            5689999999999999999999998754    459999997543       235677999999996 9999999999985


Q ss_pred             C--CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC-CEEEccccc
Q 042539           95 D--EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG-HVTLTDFDL  171 (412)
Q Consensus        95 ~--~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g-~vkL~DFGl  171 (412)
                      .  ..+|+|||||.+++|..+.     +.+++.+++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+
T Consensus       102 ~~~~~~~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~  176 (328)
T d3bqca1         102 PVSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL  176 (328)
T ss_dssp             TTTCSEEEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGG
T ss_pred             cCCCceeEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeeccccc
Confidence            4  5799999999999986542     3499999999999999999999999999999999999999765 589999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+...                                                                ........+||
T Consensus       177 a~~~~----------------------------------------------------------------~~~~~~~~~~t  192 (328)
T d3bqca1         177 AEFYH----------------------------------------------------------------PGQEYNVRVAS  192 (328)
T ss_dssp             CEECC----------------------------------------------------------------TTCCCCSCCSC
T ss_pred             ceecc----------------------------------------------------------------CCCcccccccC
Confidence            97542                                                                11233456899


Q ss_pred             CCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHhc-------------C----C--------
Q 042539          252 EEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKN-RKETFRNVLM-------------K----T--------  304 (412)
Q Consensus       252 ~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~-~~~~~~~i~~-------------~----~--------  304 (412)
                      +.|+|||.+.+. .++.++|||||||++|+|++|+.||.... .......+..             .    .        
T Consensus       193 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  272 (328)
T d3bqca1         193 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILG  272 (328)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCC
T ss_pred             ccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcc
Confidence            999999998875 47999999999999999999999997643 2222222110             0    0        


Q ss_pred             -------------CCCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCch
Q 042539          305 -------------PEFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRWD  351 (412)
Q Consensus       305 -------------~~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~~  351 (412)
                                   ......+++++|||++||++||++|+    |++|+|+||||+.+.|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~----ta~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         273 RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRL----TAREAMEHPYFYTVVKD  328 (328)
T ss_dssp             CCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGTTSCCC
T ss_pred             cccccchhhcccccccccCCHHHHHHHHHHccCChhHCc----CHHHHhcCcccCCCCCC
Confidence                         01123568899999999999999999    79999999999999985

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-56  Score=417.09  Aligned_cols=252  Identities=19%  Similarity=0.265  Sum_probs=205.5

Q ss_pred             eeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCCeEEEEee
Q 042539           24 KILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDEFLAWAVP  103 (412)
Q Consensus        24 ~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~lv~e  103 (412)
                      ++||+|+||+||+|.++..+  +++.||||+++....  .....+.+.+|+++|++++|||||++++++.+ +..|+|||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~--~~~~vAvK~~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE   87 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKK--VVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVME   87 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSS--SEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEE
T ss_pred             CCcccCCCeEEEEEEEccCC--cCeEEEEEEEChhhC--CHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEE
Confidence            47999999999999875433  445699999976542  23445678899999999999999999999865 46789999


Q ss_pred             ccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhhhhh
Q 042539          104 YCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEK  183 (412)
Q Consensus       104 ~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~  183 (412)
                      ||+||+|..++....  .+++.++..++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.+.....   
T Consensus        88 ~~~~g~L~~~l~~~~--~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~---  162 (277)
T d1xbba_          88 MAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN---  162 (277)
T ss_dssp             CCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS---
T ss_pred             cCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhcccccc---
Confidence            999999998876543  499999999999999999999999999999999999999999999999999986521100   


Q ss_pred             hcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceeecCC
Q 042539          184 QSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGD  263 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  263 (412)
                                                                               .........||+.|||||++.+.
T Consensus       163 ---------------------------------------------------------~~~~~~~~~gt~~y~APE~l~~~  185 (277)
T d1xbba_         163 ---------------------------------------------------------YYKAQTHGKWPVKWYAPECINYY  185 (277)
T ss_dssp             ---------------------------------------------------------EEEC----CCCGGGCCHHHHHHC
T ss_pred             ---------------------------------------------------------ccccccccCCCceecCchhhcCC
Confidence                                                                     00112345789999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-CC-CCCCChHHHHHHHHhhhhCCCccCCCCCChhhh-
Q 042539          264 GHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-PE-FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEI-  339 (412)
Q Consensus       264 ~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~~-~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~-  339 (412)
                      .++.++|||||||++|||++ |++||.+.+..++...+..+. +. ...+++++.+||.+||+.||++||    +++++ 
T Consensus       186 ~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RP----s~~~i~  261 (277)
T d1xbba_         186 KFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRP----GFAAVE  261 (277)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSC----CHHHHH
T ss_pred             CCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCc----CHHHHH
Confidence            99999999999999999997 999999999888887776543 22 345789999999999999999999    46666 


Q ss_pred             --hcCCCCC
Q 042539          340 --KEHVFFK  346 (412)
Q Consensus       340 --l~h~ff~  346 (412)
                        |+|+|++
T Consensus       262 ~~L~~~~~~  270 (277)
T d1xbba_         262 LRLRNYYYD  270 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             HHhhCHHhh
Confidence              5666653

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-55  Score=415.25  Aligned_cols=265  Identities=20%  Similarity=0.264  Sum_probs=216.4

Q ss_pred             CCCCccCceeeee-eeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           13 PSLDLDNLKALKI-LGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~-LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .-+..++|.+.+. ||+|+||+||+|.++.++  .+..||||++++..   .....+.+.+|+++|++++|||||+++++
T Consensus         3 l~l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~--~~~~vAvK~l~~~~---~~~~~~~~~~E~~il~~l~HpnIv~l~g~   77 (285)
T d1u59a_           3 LFLKRDNLLIADIELGCGNFGSVRQGVYRMRK--KQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGV   77 (285)
T ss_dssp             CBCCGGGEEEEEEEEECCTTEEEEEEEEC-----CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             eeecccCeEECCcEEecccCeEEEEEEEecCC--CcEEEEEEEEChhc---CHHHHHHHHHHHHHHHhCCCCCEeeEeee
Confidence            4567788999985 999999999999876543  34569999997653   23345678889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+ +.+|+|||||+||+|..++... ...+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        78 ~~~-~~~~lvmE~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGl  155 (285)
T d1u59a_          78 CQA-EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGL  155 (285)
T ss_dssp             EES-SSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTT
T ss_pred             ecc-CeEEEEEEeCCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchh
Confidence            875 4689999999999998876543 34599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.+.....                                                            ........+||
T Consensus       156 a~~~~~~~~------------------------------------------------------------~~~~~~~~~gt  175 (285)
T d1u59a_         156 SKALGADDS------------------------------------------------------------YYTARSAGKWP  175 (285)
T ss_dssp             CEECTTCSC------------------------------------------------------------EECCCCSSCCC
T ss_pred             hhccccccc------------------------------------------------------------ccccccccccC
Confidence            986532100                                                            01122345789


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|||||++.+..++.++|||||||++|||+| |+.||.+.+..++...+..+.  +....+++++.+||.+||..||++
T Consensus       176 ~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~  255 (285)
T d1u59a_         176 LKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWED  255 (285)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             ccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhH
Confidence            99999999999999999999999999999997 999999988888887776543  223467899999999999999999


Q ss_pred             cCCCCCChhhhhcCCCC
Q 042539          329 RLGYLRGACEIKEHVFF  345 (412)
Q Consensus       329 R~~~~~~~~e~l~h~ff  345 (412)
                      ||++. ++.+.|+|+|+
T Consensus       256 RPs~~-~i~~~L~~~~~  271 (285)
T d1u59a_         256 RPDFL-TVEQRMRACYY  271 (285)
T ss_dssp             SCCHH-HHHHHHHHHHH
T ss_pred             CcCHH-HHHHHHHHHHH
Confidence            99531 24444667765

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-55  Score=424.47  Aligned_cols=260  Identities=24%  Similarity=0.332  Sum_probs=208.8

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--   94 (412)
                      +++|+++++||+|+||+||+|+++.++.    .||||++.+....  ......+.+|+++|++++||||+++++++..  
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~----~vAvK~i~~~~~~--~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~   82 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQ----KVALKKVLMENEK--EGFPITALREIKILQLLKHENVVNLIEICRTKA   82 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCC----EEEEEEC----CT--TSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCC----EEEEEEEehhhcc--hHHHHHHHHHHHHHHHhcCCCccceEeeeeccc
Confidence            7999999999999999999999987554    4999999766432  2344567789999999999999999998854  


Q ss_pred             ------CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcc
Q 042539           95 ------DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTD  168 (412)
Q Consensus        95 ------~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~D  168 (412)
                            +.++|+|||||.++++....  .....+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|
T Consensus        83 ~~~~~~~~~~~iv~e~~~~~~~~~~~--~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~d  160 (318)
T d3blha1          83 SPYNRCKGSIYLVFDFCEHDLAGLLS--NVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLAD  160 (318)
T ss_dssp             --------CEEEEEECCCEEHHHHHT--CTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECC
T ss_pred             ccccccCceEEEEEeccCCCccchhh--hcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeee
Confidence                  35689999999888765433  3344699999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccc
Q 042539          169 FDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSF  248 (412)
Q Consensus       169 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ||+|+.+.....                                                           .......+.
T Consensus       161 fg~~~~~~~~~~-----------------------------------------------------------~~~~~~~~~  181 (318)
T d3blha1         161 FGLARAFSLAKN-----------------------------------------------------------SQPNRYTNR  181 (318)
T ss_dssp             CTTCEECCC----------------------------------------------------------------CCCCCSC
T ss_pred             cceeeecccccc-----------------------------------------------------------cccccccce
Confidence            999976531110                                                           112233456


Q ss_pred             ccCCCCccceeecCC-CCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCC-----C--------------
Q 042539          249 VGTEEYVSPEVVRGD-GHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTPEF-----V--------------  308 (412)
Q Consensus       249 ~gt~~Y~APE~l~~~-~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~-----~--------------  308 (412)
                      +||+.|+|||++.+. .|+.++|||||||++|||++|++||.+.+..+....+......+     .              
T Consensus       182 ~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (318)
T d3blha1         182 VVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELV  261 (318)
T ss_dssp             CSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CC
T ss_pred             ecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhccc
Confidence            899999999999875 68999999999999999999999999988877666554211000     0              


Q ss_pred             --------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          309 --------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       309 --------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                                    ..++.+.|||.+||++||++|+    +++|+++||||+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~----sa~elL~Hpff~~  310 (318)
T d3blha1         262 KGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRI----DSDDALNHDFFWS  310 (318)
T ss_dssp             SSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSC----CHHHHHHSGGGSS
T ss_pred             ccccccchhhhccccCCHHHHHHHHHHCcCChhHCc----CHHHHHcChhhcc
Confidence                          1245788999999999999999    7999999999974

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-55  Score=409.12  Aligned_cols=251  Identities=22%  Similarity=0.261  Sum_probs=215.6

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +..++|+++++||+|+||+||+|+++     +++.||||+++++...     ...+++|+.++++++|||||++++++.+
T Consensus         1 ~~~~~~~~~~~iG~G~fg~Vy~~~~~-----~~~~vAvK~l~~~~~~-----~~~~~~Ev~~~~~l~HpnIv~~~g~~~~   70 (258)
T d1k2pa_           1 IDPKDLTFLKELGTGQFGVVKYGKWR-----GQYDVAIKMIKEGSMS-----EDEFIEEAKVMMNLSHEKLVQLYGVCTK   70 (258)
T ss_dssp             CCCCCCCCCCCCCEETTEEEEEEEET-----TTEEEEEEEEESSSSC-----HHHHHHHHHHHHTCCCTTBCCEEEEECC
T ss_pred             CChHHCEEeEEEecCCCeEEEEEEEC-----CCCEEEEEEECcCcCC-----HHHHHHHHHHHHhcCCCceeeEEEEEee
Confidence            35689999999999999999999975     3345999999876542     2346789999999999999999999999


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      ++.+++|||||.+|+|..++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.
T Consensus        71 ~~~~~iv~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          71 QRPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCB
T ss_pred             CCceEEEEEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhhee
Confidence            999999999999999987765543 4589999999999999999999999999999999999999999999999999975


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      +...                                                              .........||+.|
T Consensus       150 ~~~~--------------------------------------------------------------~~~~~~~~~~t~~y  167 (258)
T d1k2pa_         150 VLDD--------------------------------------------------------------EYTSSVGSKFPVRW  167 (258)
T ss_dssp             CSSS--------------------------------------------------------------SCCCCCCSCCCGGG
T ss_pred             ccCC--------------------------------------------------------------CceeecccCCCCCc
Confidence            5211                                                              11112235799999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      +|||++.+..++.++|||||||++|||+| |+.||.+.+..++..++....  +.....++++.+||.+||+.||++|| 
T Consensus       168 ~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RP-  246 (258)
T d1k2pa_         168 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERP-  246 (258)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSC-
T ss_pred             CCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCc-
Confidence            99999999999999999999999999998 899999999999888887643  22234578999999999999999999 


Q ss_pred             CCCChhhhhcC
Q 042539          332 YLRGACEIKEH  342 (412)
Q Consensus       332 ~~~~~~e~l~h  342 (412)
                         +++++++|
T Consensus       247 ---t~~eil~~  254 (258)
T d1k2pa_         247 ---TFKILLSN  254 (258)
T ss_dssp             ---CHHHHHHH
T ss_pred             ---CHHHHHHH
Confidence               68999876

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-55  Score=413.19  Aligned_cols=258  Identities=19%  Similarity=0.321  Sum_probs=209.3

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++..++|++++.||+|+||+||+|++..++. ....||||+++...   .......+.+|+++|++++|||||++++++
T Consensus         2 ~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~-~~~~vaik~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~   77 (273)
T d1mp8a_           2 YEIQRERIELGRCIGEGQFGDVHQGIYMSPEN-PALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVI   77 (273)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC---CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             CCcCHHHeEEEEEEeeCCCcEEEEEEEecCCc-eeEEEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            56778999999999999999999999876543 34458899886543   234456788899999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      . ++.+|+|||||.||+|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|
T Consensus        78 ~-~~~~~iv~E~~~~g~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a  155 (273)
T d1mp8a_          78 T-ENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLS  155 (273)
T ss_dssp             C-SSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC----
T ss_pred             e-cCeEEEEEEeccCCcHHhhhhcc-CCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhh
Confidence            6 56789999999999998776543 356999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+...                                                              ........+||+
T Consensus       156 ~~~~~~--------------------------------------------------------------~~~~~~~~~gt~  173 (273)
T d1mp8a_         156 RYMEDS--------------------------------------------------------------TYYKASKGKLPI  173 (273)
T ss_dssp             -----------------------------------------------------------------------------CCG
T ss_pred             eeccCC--------------------------------------------------------------cceeccceecCc
Confidence            765311                                                              111223457899


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCcc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKR  329 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R  329 (412)
                      .|+|||++.+..++.++|||||||++|||++ |.+||.+.+..+++.++..+.  +....+++++.+||.+||..||++|
T Consensus       174 ~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  253 (273)
T d1mp8a_         174 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRR  253 (273)
T ss_dssp             GGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             ccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHC
Confidence            9999999999999999999999999999997 999999998888888887654  3345678999999999999999999


Q ss_pred             CCCCCChhhhhcC
Q 042539          330 LGYLRGACEIKEH  342 (412)
Q Consensus       330 ~~~~~~~~e~l~h  342 (412)
                      |    +++++++|
T Consensus       254 p----s~~ei~~~  262 (273)
T d1mp8a_         254 P----RFTELKAQ  262 (273)
T ss_dssp             C----CHHHHHHH
T ss_pred             c----CHHHHHHH
Confidence            9    68888864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-54  Score=410.48  Aligned_cols=262  Identities=20%  Similarity=0.295  Sum_probs=211.5

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      +.++..++|++.++||+|+||+||+|.++.++......||||+++....   ......+++|++++++++|||||+++++
T Consensus         1 ~~ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~E~~il~~l~H~nIv~~~g~   77 (283)
T d1mqba_           1 TTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT---EKQRVDFLGEAGIMGQFSHHNIIRLEGV   77 (283)
T ss_dssp             CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             CCcCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccC---hHHHHHHHHHHHHHHhcCCCCEeeeeEE
Confidence            3577888999999999999999999998876655556799999965432   2334567889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      +.+.+.+++|||||.+|++..++... ...+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        78 ~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGl  156 (283)
T d1mqba_          78 ISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGL  156 (283)
T ss_dssp             ECSSSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             EecCCceEEEEEecccCcchhhhhcc-cccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccch
Confidence            99999999999999999998766543 35699999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |+.+.....                                                            .........||
T Consensus       157 a~~~~~~~~------------------------------------------------------------~~~~~~~~~gt  176 (283)
T d1mqba_         157 SRVLEDDPE------------------------------------------------------------ATYTTSGGKIP  176 (283)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             hhcccCCCc------------------------------------------------------------cceEeccCCCC
Confidence            986532111                                                            01112234689


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      +.|||||++.+..++.++|||||||++|||++ |.+||.+.+..+.+..+..+.  +....+++++.+||.+||+.||++
T Consensus       177 ~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  256 (283)
T d1mqba_         177 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERAR  256 (283)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTT
T ss_pred             ccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhH
Confidence            99999999999999999999999999999998 566677778777777776543  233456789999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       257 RP----t~~eil~  265 (283)
T d1mqba_         257 RP----KFADIVS  265 (283)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5788875

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-55  Score=411.99  Aligned_cols=261  Identities=20%  Similarity=0.272  Sum_probs=216.5

Q ss_pred             CCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceee
Q 042539           10 QTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLL   89 (412)
Q Consensus        10 ~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~   89 (412)
                      ...+++..++|++++.||+|+||+||+|+++.+     ..||||+++.....     .+.+.+|+.++++++|||||+++
T Consensus         9 ~~~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~-----~~vAiK~l~~~~~~-----~~~~~~E~~~l~~l~h~nIv~~~   78 (285)
T d1fmka3           9 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-----TRVAIKTLKPGTMS-----PEAFLQEAQVMKKLRHEKLVQLY   78 (285)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSCEEEEEEETTT-----EEEEEEECCTTSSC-----HHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcceEcCHHHEEEeeEEeeCCCeEEEEEEECCC-----CEEEEEEECcccCC-----HHHHHHHHHHHHhcccCCEeEEE
Confidence            345788899999999999999999999998653     24999999765432     24567899999999999999999


Q ss_pred             eeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccc
Q 042539           90 GSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDF  169 (412)
Q Consensus        90 ~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DF  169 (412)
                      +++.+ +.+|+|||||.+|+|..++.......+++.++..++.||+.||+|||++||+||||||+||||+.+|.+||+||
T Consensus        79 g~~~~-~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~Df  157 (285)
T d1fmka3          79 AVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADF  157 (285)
T ss_dssp             EEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             EEEec-CCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEccc
Confidence            99854 56899999999999988877665556999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccc
Q 042539          170 DLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFV  249 (412)
Q Consensus       170 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      |+|+......                                                              ........
T Consensus       158 Gla~~~~~~~--------------------------------------------------------------~~~~~~~~  175 (285)
T d1fmka3         158 GLARLIEDNE--------------------------------------------------------------YTARQGAK  175 (285)
T ss_dssp             CTTC----------------------------------------------------------------------------
T ss_pred             chhhhccCCC--------------------------------------------------------------ceeecccc
Confidence            9997652111                                                              01122356


Q ss_pred             cCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCC
Q 042539          250 GTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDP  326 (412)
Q Consensus       250 gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP  326 (412)
                      ||+.|+|||++.+..++.++|||||||++|||++ |.+||.+.+..+.+..+....  +....+++++++||.+||+.||
T Consensus       176 gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP  255 (285)
T d1fmka3         176 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEP  255 (285)
T ss_dssp             CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSG
T ss_pred             ccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCH
Confidence            8999999999999999999999999999999998 567778888888887776543  3345678999999999999999


Q ss_pred             CccCCCCCChhhhhc--CCCCCC
Q 042539          327 VKRLGYLRGACEIKE--HVFFKG  347 (412)
Q Consensus       327 ~~R~~~~~~~~e~l~--h~ff~~  347 (412)
                      ++||    +++++++  ++||..
T Consensus       256 ~~Rp----s~~~i~~~L~~~~~~  274 (285)
T d1fmka3         256 EERP----TFEYLQAFLEDYFTS  274 (285)
T ss_dssp             GGSC----CHHHHHHHHHTTTSC
T ss_pred             hHCc----CHHHHHHHHhhhhcC
Confidence            9999    6899887  788864

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-54  Score=420.82  Aligned_cols=259  Identities=24%  Similarity=0.374  Sum_probs=208.5

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC-
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE-   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~-   96 (412)
                      ++|++++.||+|+||+||+|+++.++.    .||||++++..   .....+.+++|+.+|++++||||+++++++.... 
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~----~vAvK~i~~~~---~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~   80 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKV----RVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTI   80 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCS----EEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCc----EEEEEEEehhc---ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccc
Confidence            469999999999999999999987554    49999997654   2344567888999999999999999999997653 


Q ss_pred             ---eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccc
Q 042539           97 ---FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSR  173 (412)
Q Consensus        97 ---~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~  173 (412)
                         ..+++++++.||+|..++...   .+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+
T Consensus        81 ~~~~~~~l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~  157 (345)
T d1pmea_          81 EQMKDVYLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLAR  157 (345)
T ss_dssp             TTCCCEEEEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             cccceEEEEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCcee
Confidence               234445566699999887643   49999999999999999999999999999999999999999999999999997


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      ......                                                            .........+||+.
T Consensus       158 ~~~~~~------------------------------------------------------------~~~~~~~~~~gt~~  177 (345)
T d1pmea_         158 VADPDH------------------------------------------------------------DHTGFLTEYVATRW  177 (345)
T ss_dssp             ECCGGG------------------------------------------------------------CBCCTTCCCCSCGG
T ss_pred             eccCCC------------------------------------------------------------ccceeeccccccce
Confidence            653211                                                            11122345689999


Q ss_pred             CccceeecC-CCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcC--C---------------------C----
Q 042539          254 YVSPEVVRG-DGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMK--T---------------------P----  305 (412)
Q Consensus       254 Y~APE~l~~-~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~--~---------------------~----  305 (412)
                      |+|||++.. ..++.++||||+||++|+|++|++||.+.+..+........  .                     +    
T Consensus       178 y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (345)
T d1pmea_         178 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNK  257 (345)
T ss_dssp             GCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCC
T ss_pred             echHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCC
Confidence            999999854 56789999999999999999999999998766554443210  0                     0    


Q ss_pred             -----CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          306 -----EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       306 -----~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                           .++..++++++||.+||++||.+||    +++|+++||||+...-
T Consensus       258 ~~~~~~~~~~s~~~~~li~~~L~~dP~~R~----ta~e~L~hpf~~~~~~  303 (345)
T d1pmea_         258 VPWNRLFPNADSKALDLLDKMLTFNPHKRI----EVEQALAHPYLEQYYD  303 (345)
T ss_dssp             CCHHHHCTTSCHHHHHHHHHHSCSSTTTSC----CHHHHHTSGGGTTTCC
T ss_pred             CCHHHhCCCCCHHHHHHHHHHccCChhHCc----CHHHHhcCHhhccCCC
Confidence                 1235678899999999999999999    7999999999986543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-54  Score=409.62  Aligned_cols=257  Identities=26%  Similarity=0.422  Sum_probs=215.0

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      +++|+++++||+|+||+||+|+++.++.    .||||++++...  ......++.+|+.+|+.++|||||++++++.+.+
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~~~~----~vAvK~i~~~~~--~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~   74 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRETHE----IVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLHDVLHSDK   74 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCC----EEEEEEEESSCS--STTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECCCCc----EEEEEEEehhhC--ChHHHHHHHHHHHHHHhcCcCCEEeecccccccc
Confidence            5799999999999999999999987554    499999976543  2345677888999999999999999999999999


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhh
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLV  176 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~  176 (412)
                      .+++||+++.|++|..++..  .+.+++..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||.|+...
T Consensus        75 ~~~iv~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~  152 (292)
T d1unla_          75 KLTLVFEFCDQDLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFG  152 (292)
T ss_dssp             EEEEEEECCSEEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             ceeEEeeecccccccccccc--ccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhccc
Confidence            99999999999998776554  3459999999999999999999999999999999999999999999999999997652


Q ss_pred             chhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCcc
Q 042539          177 KKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVS  256 (412)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  256 (412)
                      ..                                                               ........+++.|+|
T Consensus       153 ~~---------------------------------------------------------------~~~~~~~~~~~~~~~  169 (292)
T d1unla_         153 IP---------------------------------------------------------------VRCYSAEVVTLWYRP  169 (292)
T ss_dssp             SC---------------------------------------------------------------CSCCCSCCSCGGGCC
T ss_pred             CC---------------------------------------------------------------Cccceeeccccchhh
Confidence            11                                                               112223467889999


Q ss_pred             ceeecCCC-CCchhhHHHHHHHHHHHhhCCCC-CCCCCHHHHHHHHhcC--CC---------------------------
Q 042539          257 PEVVRGDG-HEFAVDWWALGILTYEMLYGTTP-FRGKNRKETFRNVLMK--TP---------------------------  305 (412)
Q Consensus       257 PE~l~~~~-~~~~~DiwSlGvil~ell~g~~P-f~~~~~~~~~~~i~~~--~~---------------------------  305 (412)
                      ||++.+.. ++.++|||||||++|||++|+.| |.+.+..+.+..+...  .+                           
T Consensus       170 pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
T d1unla_         170 PDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLV  249 (292)
T ss_dssp             HHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCT
T ss_pred             hhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhh
Confidence            99998765 58999999999999999999888 5566666666655321  00                           


Q ss_pred             -CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCC
Q 042539          306 -EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGV  348 (412)
Q Consensus       306 -~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~  348 (412)
                       .....++.++|||++||++||.+||    +++|+|+||||++.
T Consensus       250 ~~~~~~s~~~~dll~~mL~~dP~~R~----sa~e~L~Hp~f~~~  289 (292)
T d1unla_         250 NVVPKLNATGRDLLQNLLKCNPVQRI----SAEEALQHPYFSDF  289 (292)
T ss_dssp             TTSTTCCHHHHHHHHHHSCSSGGGSC----CHHHHTTSGGGSSC
T ss_pred             hccccCCHHHHHHHHHHccCChhHCc----CHHHHhcChhhcCC
Confidence             1123467899999999999999999    69999999999863

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-54  Score=414.68  Aligned_cols=258  Identities=20%  Similarity=0.253  Sum_probs=209.8

Q ss_pred             CCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe
Q 042539           15 LDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET   94 (412)
Q Consensus        15 ~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~   94 (412)
                      +.-++|+++++||+|+||+||+|++..++......||+|.++....   ....+.+.+|+.++++++|||||++++++.+
T Consensus         6 ~k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~   82 (317)
T d1xkka_           6 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLT   82 (317)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-------CTHHHHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred             CCHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            3457899999999999999999999887766666789998865432   2235667889999999999999999999986


Q ss_pred             CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccch
Q 042539           95 DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus        95 ~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      + ..+++||+|.+|+|...+... ...+++..++.++.||+.||+|||++|||||||||+|||++.++++||+|||+|+.
T Consensus        83 ~-~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~  160 (317)
T d1xkka_          83 S-TVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  160 (317)
T ss_dssp             S-SEEEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHH
T ss_pred             C-CeeEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeecccccee
Confidence            5 567888999999998776654 35699999999999999999999999999999999999999999999999999986


Q ss_pred             hhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCC
Q 042539          175 LVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEY  254 (412)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  254 (412)
                      .....                                                             .........||+.|
T Consensus       161 ~~~~~-------------------------------------------------------------~~~~~~~~~gt~~y  179 (317)
T d1xkka_         161 LGAEE-------------------------------------------------------------KEYHAEGGKVPIKW  179 (317)
T ss_dssp             TTTTC-------------------------------------------------------------C--------CCTTT
T ss_pred             ccccc-------------------------------------------------------------ccccccccccCccc
Confidence            53210                                                             01112345689999


Q ss_pred             ccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CCCCCCChHHHHHHHHhhhhCCCccCC
Q 042539          255 VSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PEFVGQRTALTDLIQRLLEKDPVKRLG  331 (412)
Q Consensus       255 ~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~dli~~~L~~dP~~R~~  331 (412)
                      ||||++.+..|+.++|||||||++|||+| |.+||.+.+..+....+..+.  +....+++++.+||.+||..||++|| 
T Consensus       180 ~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RP-  258 (317)
T d1xkka_         180 MALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRP-  258 (317)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSC-
T ss_pred             cChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCc-
Confidence            99999999999999999999999999998 899999988777776665543  23345789999999999999999999 


Q ss_pred             CCCChhhhhcC
Q 042539          332 YLRGACEIKEH  342 (412)
Q Consensus       332 ~~~~~~e~l~h  342 (412)
                         ++.++++|
T Consensus       259 ---s~~eil~~  266 (317)
T d1xkka_         259 ---KFRELIIE  266 (317)
T ss_dssp             ---CHHHHHHH
T ss_pred             ---CHHHHHHH
Confidence               68999887

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-54  Score=422.07  Aligned_cols=255  Identities=25%  Similarity=0.415  Sum_probs=203.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe--
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET--   94 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--   94 (412)
                      +++|+++++||+|+||+||+|+++.++    +.||||++.+....  .....++.+|+.+|++++|||||+++++|..  
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~----~~vAvK~i~~~~~~--~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~   89 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLD----RNVAIKKLSRPFQN--QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQK   89 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTT----EEEEEEEEESTTSS--HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCC----CEEEEEEEChhhcC--HHHHHHHHHHHHHHHhcCCCCeeEEEEEEeccc
Confidence            478999999999999999999998755    44999999776532  3445678899999999999999999999964  


Q ss_pred             ----CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccc
Q 042539           95 ----DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFD  170 (412)
Q Consensus        95 ----~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFG  170 (412)
                          ..++|+|||||.|+.+..+   .  ..+++.+++.++.||+.||+|||++||+||||||+|||++.++.+|++|||
T Consensus        90 ~~~~~~~~~iv~Ey~~~~l~~~~---~--~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~  164 (355)
T d2b1pa1          90 TLEEFQDVYLVMELMDANLCQVI---Q--MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  164 (355)
T ss_dssp             STTTCCEEEEEEECCSEEHHHHH---T--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCC
T ss_pred             ccccCceeEEEEeccchHHHHhh---h--cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechh
Confidence                3689999999987765432   1  349999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +++...                                                                ........+|
T Consensus       165 ~~~~~~----------------------------------------------------------------~~~~~~~~~~  180 (355)
T d2b1pa1         165 LARTAG----------------------------------------------------------------TSFMMTPYVV  180 (355)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhhccc----------------------------------------------------------------cccccccccc
Confidence            987542                                                                1122345689


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhc----------------------CCCCCC
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLM----------------------KTPEFV  308 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~----------------------~~~~~~  308 (412)
                      |+.|+|||++.+..++.++||||+||++|+|++|++||.+.+......+++.                      ..+...
T Consensus       181 t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (355)
T d2b1pa1         181 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYA  260 (355)
T ss_dssp             CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCC
T ss_pred             cccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccc
Confidence            9999999999999999999999999999999999999999887776655432                      111110


Q ss_pred             ---------------------CCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCCc
Q 042539          309 ---------------------GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVRW  350 (412)
Q Consensus       309 ---------------------~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~~  350 (412)
                                           ..+++++|||++||..||++||    ||+|+|+||||+...+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~----ta~elL~Hpw~~~~~~  319 (355)
T d2b1pa1         261 GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRI----SVDDALQHPYINVWYD  319 (355)
T ss_dssp             CCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSC----CHHHHHTSTTTGGGCC
T ss_pred             ccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCc----CHHHHhcCcccCCCCC
Confidence                                 1135789999999999999999    7999999999997544

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-54  Score=421.71  Aligned_cols=254  Identities=24%  Similarity=0.399  Sum_probs=210.2

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeC-
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETD-   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-   95 (412)
                      .++|+++++||+|+||+||+|+++.++    +.||||++++...  .....+++.+|+++|++++|||||+++++|... 
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~----~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~   90 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTG----LRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPAR   90 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTT----EEEEEEECSCTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCS
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCC----CEEEEEEECchhc--ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecc
Confidence            378999999999999999999998754    4599999987643  223456788899999999999999999999643 


Q ss_pred             ----CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           96 ----EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        96 ----~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                          ...+++|+++.||+|..++..   +.+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+|++|||+
T Consensus        91 ~~~~~~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~  167 (348)
T d2gfsa1          91 SLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL  167 (348)
T ss_dssp             STTTCCCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC--
T ss_pred             ccccCceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccch
Confidence                344666777889999887743   3599999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      |....                                                                  ....+.+||
T Consensus       168 a~~~~------------------------------------------------------------------~~~~~~~g~  181 (348)
T d2gfsa1         168 ARHTD------------------------------------------------------------------DEMTGYVAT  181 (348)
T ss_dssp             --CCT------------------------------------------------------------------GGGSSSCHH
T ss_pred             hcccC------------------------------------------------------------------ccccccccc
Confidence            86432                                                                  112345799


Q ss_pred             CCCccceeecCCC-CCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC-------------------------
Q 042539          252 EEYVSPEVVRGDG-HEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVLMKTP-------------------------  305 (412)
Q Consensus       252 ~~Y~APE~l~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~-------------------------  305 (412)
                      +.|+|||++.+.. ++.++|||||||++|+|++|++||.+.+.......+.....                         
T Consensus       182 ~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (348)
T d2gfsa1         182 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM  261 (348)
T ss_dssp             HHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCC
T ss_pred             ccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccC
Confidence            9999999987765 58999999999999999999999999988777666542111                         


Q ss_pred             -------CCCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCCCC
Q 042539          306 -------EFVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKGVR  349 (412)
Q Consensus       306 -------~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~~~  349 (412)
                             .+...+++++|||.+||+.||++|+    |++|+++||||++..
T Consensus       262 ~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~----ta~elL~Hp~f~~~~  308 (348)
T d2gfsa1         262 PKMNFANVFIGANPLAVDLLEKMLVLDSDKRI----TAAQALAHAYFAQYH  308 (348)
T ss_dssp             CCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSC----CHHHHHTSGGGTTTC
T ss_pred             CCcchhhhcCCCCHHHHHHHHHHCcCChhhCc----CHHHHhcCHhhCCCC
Confidence                   0235678999999999999999999    799999999998753

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-54  Score=410.36  Aligned_cols=263  Identities=22%  Similarity=0.319  Sum_probs=206.1

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccceee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKLL   89 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~   89 (412)
                      .+++..++|+++++||+|+||+||+|++...+. .+++.||||+++....   ....+.+.+|..++.++ +|+|||.++
T Consensus         7 ~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---~~~~~~~~~e~~~l~~~~~h~~iv~~~   83 (299)
T d1ywna1           7 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLL   83 (299)
T ss_dssp             HHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C---HHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---cHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence            346788999999999999999999999876543 3456799999975432   23345666788888887 589999999


Q ss_pred             eeEEeC-CeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCC
Q 042539           90 GSLETD-EFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPE  154 (412)
Q Consensus        90 ~~~~~~-~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~  154 (412)
                      +++... ..+++|||||+||+|..++....              ...+++.++..++.||+.||+|||++|||||||||+
T Consensus        84 ~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~  163 (299)
T d1ywna1          84 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  163 (299)
T ss_dssp             EEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGG
T ss_pred             eeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcc
Confidence            987654 57999999999999999886542              234899999999999999999999999999999999


Q ss_pred             ceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccc
Q 042539          155 NILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSR  234 (412)
Q Consensus       155 NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (412)
                      |||++.+|++||+|||+|+.....                                                        
T Consensus       164 NILl~~~~~~Kl~DFGla~~~~~~--------------------------------------------------------  187 (299)
T d1ywna1         164 NILLSEKNVVKICDFGLARDIYKD--------------------------------------------------------  187 (299)
T ss_dssp             GEEECGGGCEEECC------CCSC--------------------------------------------------------
T ss_pred             ceeECCCCcEEEccCcchhhcccc--------------------------------------------------------
Confidence            999999999999999999754211                                                        


Q ss_pred             cccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHhcCC--CCC-CCC
Q 042539          235 RQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVLMKT--PEF-VGQ  310 (412)
Q Consensus       235 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g-~~Pf~~~~~~~~~~~i~~~~--~~~-~~~  310 (412)
                           .......+.+||+.|||||++.+..++.++|||||||++|||++| .+||.+.+..+.+..++...  +.. ...
T Consensus       188 -----~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (299)
T d1ywna1         188 -----PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYT  262 (299)
T ss_dssp             -----TTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTC
T ss_pred             -----ccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccC
Confidence                 111223456899999999999999999999999999999999986 67898876555444444322  222 346


Q ss_pred             ChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       311 ~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ++++.+||.+||+.||++||    +++|+++|
T Consensus       263 ~~~l~~li~~cl~~dP~~Rp----t~~eil~~  290 (299)
T d1ywna1         263 TPEMYQTMLDCWHGEPSQRP----TFSELVEH  290 (299)
T ss_dssp             CHHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhHCc----CHHHHHHH
Confidence            79999999999999999999    68999875

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-54  Score=404.75  Aligned_cols=261  Identities=20%  Similarity=0.259  Sum_probs=207.5

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      .-+..+||++++.||+|+||+||+|+.+.... ....||||++++..... .+..+.+.+|+++|++++|||||++++++
T Consensus         3 ~~i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~-~~~~vAiK~l~~~~~~~-~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~   80 (273)
T d1u46a_           3 CLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSG-KTVSVAVKCLKPDVLSQ-PEAMDDFIREVNAMHSLDHRNLIRLYGVV   80 (273)
T ss_dssp             EECCGGGEEEEEECC----CCCEEEEEECTTS-CEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             eEEchHHeEEEEEEecCCCeEEEEEEEECCCC-cEEEEEEEEEChhhcCC-HHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            34677899999999999999999998765432 23458999997765533 34556788999999999999999999999


Q ss_pred             EeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEcccccc
Q 042539           93 ETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLS  172 (412)
Q Consensus        93 ~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla  172 (412)
                      .+ ..+++|||||.+|++..++.... +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        81 ~~-~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~  158 (273)
T d1u46a_          81 LT-PPMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM  158 (273)
T ss_dssp             CS-SSCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             ee-cchheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhh
Confidence            75 47789999999999987766543 35999999999999999999999999999999999999999999999999999


Q ss_pred             chhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCC
Q 042539          173 RNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTE  252 (412)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  252 (412)
                      +.+.....                                                            .........||.
T Consensus       159 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~  178 (273)
T d1u46a_         159 RALPQNDD------------------------------------------------------------HYVMQEHRKVPF  178 (273)
T ss_dssp             EECCC-CC------------------------------------------------------------EEEC-----CCG
T ss_pred             hhcccCCC------------------------------------------------------------cceecCccccCc
Confidence            86532110                                                            111223456888


Q ss_pred             CCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCCCC---CCCCChHHHHHHHHhhhhCCCc
Q 042539          253 EYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKTPE---FVGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       253 ~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~dli~~~L~~dP~~  328 (412)
                      .|+|||++.+..++.++|||||||++|||++ |.+||.+.+..+...++......   ...+++++.+||.+||..||++
T Consensus       179 ~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~  258 (273)
T d1u46a_         179 AWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPED  258 (273)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhH
Confidence            9999999999999999999999999999998 89999999999998888765432   3457899999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    +++++.+
T Consensus       259 RP----t~~ei~~  267 (273)
T d1u46a_         259 RP----TFVALRD  267 (273)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5777753

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-53  Score=409.10  Aligned_cols=261  Identities=22%  Similarity=0.329  Sum_probs=217.1

Q ss_pred             CCCCCCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccce
Q 042539            9 PQTTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPK   87 (412)
Q Consensus         9 ~~~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~   87 (412)
                      |...+.+..++|++.++||+|+||+||+|+++.++..  ..||||.+++...   .+..+.+.+|+++|.++ +|||||+
T Consensus         1 ~~~~~~i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~--~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~~HpnIv~   75 (309)
T d1fvra_           1 PTIYPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLR--MDAAIKRMKEYAS---KDDHRDFAGELEVLCKLGHHPNIIN   75 (309)
T ss_dssp             CCCSSBCCGGGCEEEEEEECGGGCEEEEEEEEETTEE--EEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCC
T ss_pred             CCCCCccCHHHcEEEEEEeeCCCcEEEEEEECCCCeE--EEEEEEEECcccC---hHHHHHHHHHHHHHHhccCCCCEee
Confidence            4566778999999999999999999999998775432  2377888754322   23355678899999999 6999999


Q ss_pred             eeeeEEeCCeEEEEeeccCCCCchhHHHhh--------------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCC
Q 042539           88 LLGSLETDEFLAWAVPYCPGGDLNVLRYKQ--------------NDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKP  153 (412)
Q Consensus        88 l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~--------------~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp  153 (412)
                      +++++.+++.+|+|||||+||+|.+++...              ....+++.++..++.||+.||.|||++||+||||||
T Consensus        76 ~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp  155 (309)
T d1fvra_          76 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAA  155 (309)
T ss_dssp             EEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSG
T ss_pred             EEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCcccccccc
Confidence            999999999999999999999999988653              235699999999999999999999999999999999


Q ss_pred             CceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCcc
Q 042539          154 ENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVS  233 (412)
Q Consensus       154 ~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
                      +|||++.++.+||+|||+|+....                                                        
T Consensus       156 ~NIL~~~~~~~kl~DfG~a~~~~~--------------------------------------------------------  179 (309)
T d1fvra_         156 RNILVGENYVAKIADFGLSRGQEV--------------------------------------------------------  179 (309)
T ss_dssp             GGEEECGGGCEEECCTTCEESSCE--------------------------------------------------------
T ss_pred             ceEEEcCCCceEEccccccccccc--------------------------------------------------------
Confidence            999999999999999999975421                                                        


Q ss_pred             ccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHhcCC-CC-CCCC
Q 042539          234 RRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVLMKT-PE-FVGQ  310 (412)
Q Consensus       234 ~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g-~~Pf~~~~~~~~~~~i~~~~-~~-~~~~  310 (412)
                              ........||..|+|||.+.+..++.++|||||||++|||++| .+||.+.+..++...+..+. +. ...+
T Consensus       180 --------~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~  251 (309)
T d1fvra_         180 --------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNC  251 (309)
T ss_dssp             --------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTB
T ss_pred             --------cccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCccC
Confidence                    1112345789999999999999999999999999999999996 56899999888888876543 22 3456


Q ss_pred             ChHHHHHHHHhhhhCCCccCCCCCChhhhhcC
Q 042539          311 RTALTDLIQRLLEKDPVKRLGYLRGACEIKEH  342 (412)
Q Consensus       311 ~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h  342 (412)
                      ++++++||.+||+.||++||    +++++++|
T Consensus       252 ~~~~~~li~~cl~~dP~~RP----s~~eil~~  279 (309)
T d1fvra_         252 DDEVYDLMRQCWREKPYERP----SFAQILVS  279 (309)
T ss_dssp             CHHHHHHHHHHTCSSGGGSC----CHHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhHCc----CHHHHHHH
Confidence            89999999999999999999    68999976

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-53  Score=402.74  Aligned_cols=263  Identities=20%  Similarity=0.270  Sum_probs=216.6

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCCCCC---CCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCccc
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAADPT---ARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLP   86 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv   86 (412)
                      +++++..++|++++.||+|+||.||+|++..++..   ....||||++++...   ......+.+|...+.++ +|||||
T Consensus         6 ~~~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~e~~~l~~~~~HpnIv   82 (299)
T d1fgka_           6 PRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT---EKDLSDLISEMEMMKMIGKHKNII   82 (299)
T ss_dssp             TTTBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC---HHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             CcCcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccC---hHHHHHHHHHHHHHHHhcCCCeEE
Confidence            45788999999999999999999999998766532   234699999976542   23345677798999888 699999


Q ss_pred             eeeeeEEeCCeEEEEeeccCCCCchhHHHhhC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCC
Q 042539           87 KLLGSLETDEFLAWAVPYCPGGDLNVLRYKQN--------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLK  152 (412)
Q Consensus        87 ~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~--------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlK  152 (412)
                      ++++++.+++.+|+|||||.||+|..++....              ...+++.++..++.||+.||+|||++||||||||
T Consensus        83 ~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiK  162 (299)
T d1fgka_          83 NLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLA  162 (299)
T ss_dssp             CEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             ecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeec
Confidence            99999999999999999999999999887553              2358999999999999999999999999999999


Q ss_pred             CCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          153 PENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       153 p~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                      |+|||++.+|.+||+|||+++......                                                     
T Consensus       163 p~NiLl~~~~~~kl~dfg~~~~~~~~~-----------------------------------------------------  189 (299)
T d1fgka_         163 ARNVLVTEDNVMKIADFGLARDIHHID-----------------------------------------------------  189 (299)
T ss_dssp             GGGEEECTTCCEEECSTTCCCCGGGCC-----------------------------------------------------
T ss_pred             ccceeecCCCCeEeccchhhccccccc-----------------------------------------------------
Confidence            999999999999999999998653211                                                     


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-CC-CCC
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-PE-FVG  309 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~~-~~~  309 (412)
                              ........+||+.|+|||++.+..|+.++|||||||++|||++ |.+||.+.+..+++..+..+. +. ...
T Consensus       190 --------~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~p~~  261 (299)
T d1fgka_         190 --------YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSN  261 (299)
T ss_dssp             --------TTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSS
T ss_pred             --------cccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCCCCCCcc
Confidence                    1122345679999999999999999999999999999999997 799999999888877776543 22 235


Q ss_pred             CChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          310 QRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       310 ~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .++++.+||.+||+.||.+||    ++.|+++
T Consensus       262 ~~~~l~~li~~cl~~dP~~Rp----s~~eil~  289 (299)
T d1fgka_         262 CTNELYMMMRDCWHAVPSQRP----TFKQLVE  289 (299)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             chHHHHHHHHHHccCCHhHCc----CHHHHHH
Confidence            679999999999999999999    6888875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.9e-53  Score=403.29  Aligned_cols=261  Identities=20%  Similarity=0.261  Sum_probs=219.6

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCC-CCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeee
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAAD-PTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGS   91 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~   91 (412)
                      .++..++|++++.||+|+||+||+|+++... ..+++.||||++++..   .....+.+.+|+++|++++||||++++++
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~---~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc---ChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            4566789999999999999999999987532 3355679999997543   23456678889999999999999999999


Q ss_pred             EEeCCeEEEEeeccCCCCchhHHHhhC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceee
Q 042539           92 LETDEFLAWAVPYCPGGDLNVLRYKQN----------------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYR  149 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L~~~~~~~~----------------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHr  149 (412)
                      +.+.+.++++||||.+|+|..++....                      ...+++..+..++.|++.||+|||++|||||
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHr  164 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHR  164 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             eccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEee
Confidence            999999999999999999998886532                      1248899999999999999999999999999


Q ss_pred             eCCCCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCC
Q 042539          150 DLKPENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARV  229 (412)
Q Consensus       150 DlKp~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (412)
                      ||||+|||++.++.+||+|||+|+.+....                                                  
T Consensus       165 DlKp~NILld~~~~~Kl~DFGls~~~~~~~--------------------------------------------------  194 (301)
T d1lufa_         165 DLATRNCLVGENMVVKIADFGLSRNIYSAD--------------------------------------------------  194 (301)
T ss_dssp             CCSGGGEEECGGGCEEECCCSCHHHHTGGG--------------------------------------------------
T ss_pred             EEcccceEECCCCcEEEccchhheeccCCc--------------------------------------------------
Confidence            999999999999999999999998653221                                                  


Q ss_pred             CCccccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHhcCCC-C-
Q 042539          230 SPVSRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVLMKTP-E-  306 (412)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g-~~Pf~~~~~~~~~~~i~~~~~-~-  306 (412)
                                 ......+.+||+.|+|||++.+..|+.++|||||||++|||++| .+||.+.+..+....+..+.. . 
T Consensus       195 -----------~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~  263 (301)
T d1lufa_         195 -----------YYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILAC  263 (301)
T ss_dssp             -----------CBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC
T ss_pred             -----------cccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCC
Confidence                       11122356789999999999999999999999999999999988 578999999998888876542 2 


Q ss_pred             CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          307 FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       307 ~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ...+++++.+||.+||+.||++||    ++.|+++
T Consensus       264 p~~~~~~~~~li~~cl~~~P~~RP----t~~ev~~  294 (301)
T d1lufa_         264 PENCPLELYNLMRLCWSKLPADRP----SFCSIHR  294 (301)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             CccchHHHHHHHHHHcCCChhHCc----CHHHHHH
Confidence            335789999999999999999999    5788754

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-54  Score=400.77  Aligned_cols=247  Identities=22%  Similarity=0.332  Sum_probs=206.4

Q ss_pred             CCCCccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeE
Q 042539           13 PSLDLDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSL   92 (412)
Q Consensus        13 ~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~   92 (412)
                      +++.+++|++++.||+|+||.||+|++++      ..||||+++++.      ..+.+.+|++++++++|||||++++++
T Consensus         2 w~i~~~~~~~~~~lG~G~fg~Vy~~~~~~------~~vAvK~i~~~~------~~~~~~~E~~~l~~l~HpnIv~~~g~~   69 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFGDVMLGDYRG------NKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVI   69 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETT------EEEEEEECCCCC--------HHHHHTHHHHTTCCCTTBCCEEEEE
T ss_pred             CccCHHHeEEeEEEecCCCeEEEEEEECC------eEEEEEEECcHH------HHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            68899999999999999999999998853      249999997643      234577899999999999999999988


Q ss_pred             Ee-CCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccc
Q 042539           93 ET-DEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDL  171 (412)
Q Consensus        93 ~~-~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGl  171 (412)
                      .+ ++.+|+|||||.+|+|.+++.......+++..++.++.||+.||.|||+++|+||||||+|||++.+|.+||+|||+
T Consensus        70 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~  149 (262)
T d1byga_          70 VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGL  149 (262)
T ss_dssp             CCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             EecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeeccccc
Confidence            54 56799999999999999988765444589999999999999999999999999999999999999999999999999


Q ss_pred             cchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccC
Q 042539          172 SRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGT  251 (412)
Q Consensus       172 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  251 (412)
                      ++....                                                                  ...+..+|
T Consensus       150 s~~~~~------------------------------------------------------------------~~~~~~~~  163 (262)
T d1byga_         150 TKEASS------------------------------------------------------------------TQDTGKLP  163 (262)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ceecCC------------------------------------------------------------------CCcccccc
Confidence            975421                                                                  11234688


Q ss_pred             CCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC-CCC-CCCChHHHHHHHHhhhhCCCc
Q 042539          252 EEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT-PEF-VGQRTALTDLIQRLLEKDPVK  328 (412)
Q Consensus       252 ~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~-~~~-~~~~~~~~dli~~~L~~dP~~  328 (412)
                      ..|+|||++.+..++.++|||||||++|||++ |++||.+.+..+....+..+. ++. ...++++.+||.+||..||.+
T Consensus       164 ~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~  243 (262)
T d1byga_         164 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAM  243 (262)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhH
Confidence            99999999999999999999999999999998 899999988888888876532 333 346799999999999999999


Q ss_pred             cCCCCCChhhhhc
Q 042539          329 RLGYLRGACEIKE  341 (412)
Q Consensus       329 R~~~~~~~~e~l~  341 (412)
                      ||    ++.++++
T Consensus       244 Rp----s~~~l~~  252 (262)
T d1byga_         244 RP----SFLQLRE  252 (262)
T ss_dssp             SC----CHHHHHH
T ss_pred             Cc----CHHHHHH
Confidence            99    5788775

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-52  Score=401.98  Aligned_cols=262  Identities=18%  Similarity=0.219  Sum_probs=220.9

Q ss_pred             CCCCCccCceeeeeeeccCceEEEEEEEcCCCC-CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeee
Q 042539           12 TPSLDLDNLKALKILGKGAMGTVFLVHDRAADP-TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLG   90 (412)
Q Consensus        12 ~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~   90 (412)
                      .+++..++|++++.||+|+||+||+|.++.... ..++.||||++++...   ......+.+|++++++++|||||++++
T Consensus        14 ~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~---~~~~~~~~~E~~il~~l~h~nIv~~~~   90 (308)
T d1p4oa_          14 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS---MRERIEFLNEASVMKEFNCHHVVRLLG   90 (308)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC---HHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             ceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccC---hHHHHHHHHHHHHHHHcCCCCEeeeee
Confidence            478889999999999999999999998864321 1345699999976432   234556788999999999999999999


Q ss_pred             eEEeCCeEEEEeeccCCCCchhHHHhhC--------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCC
Q 042539           91 SLETDEFLAWAVPYCPGGDLNVLRYKQN--------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        91 ~~~~~~~~~lv~e~~~gg~L~~~~~~~~--------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g  162 (412)
                      ++..++.+++|||||.+|+|..++....        ...++...+..++.|++.||.|||+++|+||||||+|||++.++
T Consensus        91 ~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~  170 (308)
T d1p4oa_          91 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDF  170 (308)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC
T ss_pred             EEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCc
Confidence            9999999999999999999988766432        12368899999999999999999999999999999999999999


Q ss_pred             CEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCC
Q 042539          163 HVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNG  242 (412)
Q Consensus       163 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (412)
                      ++||+|||+|+.......                                                             .
T Consensus       171 ~~Kl~DFGla~~~~~~~~-------------------------------------------------------------~  189 (308)
T d1p4oa_         171 TVKIGDFGMTRDIYETDY-------------------------------------------------------------Y  189 (308)
T ss_dssp             CEEECCTTCCCGGGGGGC-------------------------------------------------------------E
T ss_pred             eEEEeecccceeccCCcc-------------------------------------------------------------e
Confidence            999999999986532211                                                             1


Q ss_pred             CCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHhcCCC--CCCCCChHHHHHHH
Q 042539          243 ERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYG-TTPFRGKNRKETFRNVLMKTP--EFVGQRTALTDLIQ  319 (412)
Q Consensus       243 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g-~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~dli~  319 (412)
                      ......+||+.|+|||.+.+..++.++|||||||++|||+|| .+||.+.+..+.+..+..+..  ....+++.+.+||.
T Consensus       190 ~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~  269 (308)
T d1p4oa_         190 RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMR  269 (308)
T ss_dssp             EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             eeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCCCcccchHHHHHHHH
Confidence            112345789999999999999999999999999999999997 689999999999888876442  23456789999999


Q ss_pred             HhhhhCCCccCCCCCChhhhhc
Q 042539          320 RLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       320 ~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      +||+.||.+||    +++++++
T Consensus       270 ~cl~~~P~~RP----s~~~il~  287 (308)
T d1p4oa_         270 MCWQYNPKMRP----SFLEIIS  287 (308)
T ss_dssp             HHTCSSGGGSC----CHHHHHH
T ss_pred             HHcCCChhHCc----CHHHHHH
Confidence            99999999999    5788876

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-52  Score=398.88  Aligned_cols=263  Identities=21%  Similarity=0.293  Sum_probs=218.8

Q ss_pred             CCCCCCccCceeeeeeeccCceEEEEEEEcCC-CCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhc-CCCcccee
Q 042539           11 TTPSLDLDNLKALKILGKGAMGTVFLVHDRAA-DPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRL-SHPFLPKL   88 (412)
Q Consensus        11 ~~~~~~~~~y~~~~~LG~G~fg~V~la~~~~~-~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l   88 (412)
                      ..+++..++|++.++||+|+||.||+|+++.. +..++..||||++++...   ......+.+|+.+++++ +|||||++
T Consensus        16 ~~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~~E~~~~~~l~~HpnIv~~   92 (311)
T d1t46a_          16 HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVNL   92 (311)
T ss_dssp             GGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccC---HHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            35678889999999999999999999987642 344667799999976542   33455678899999999 59999999


Q ss_pred             eeeEEeCCeEEEEeeccCCCCchhHHHhhC----------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCC
Q 042539           89 LGSLETDEFLAWAVPYCPGGDLNVLRYKQN----------------DRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLK  152 (412)
Q Consensus        89 ~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~----------------~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlK  152 (412)
                      ++++.+++.+|+|||||.||+|..++....                ...+++..+..++.||+.||+|||++||||||||
T Consensus        93 ~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLK  172 (311)
T d1t46a_          93 LGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLA  172 (311)
T ss_dssp             EEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccc
Confidence            999999999999999999999998877543                2258999999999999999999999999999999


Q ss_pred             CCceEEccCCCEEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCc
Q 042539          153 PENILIRQSGHVTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPV  232 (412)
Q Consensus       153 p~NiLl~~~g~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
                      |+|||++.++.+||+|||+++......                                                     
T Consensus       173 p~NIl~~~~~~~ki~DfG~~~~~~~~~-----------------------------------------------------  199 (311)
T d1t46a_         173 ARNILLTHGRITKICDFGLARDIKNDS-----------------------------------------------------  199 (311)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCTTSCT-----------------------------------------------------
T ss_pred             cccccccccCcccccccchheeccCCC-----------------------------------------------------
Confidence            999999999999999999997653211                                                     


Q ss_pred             cccccccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhh-CCCCCCCCCHHHHHHHHhcCC--CC-CC
Q 042539          233 SRRQQSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLY-GTTPFRGKNRKETFRNVLMKT--PE-FV  308 (412)
Q Consensus       233 ~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~-g~~Pf~~~~~~~~~~~i~~~~--~~-~~  308 (412)
                              ........+||+.|+|||++.+..++.++|||||||++|||+| |.+||.+.+..+.+.+++...  +. ..
T Consensus       200 --------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~  271 (311)
T d1t46a_         200 --------NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE  271 (311)
T ss_dssp             --------TSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCT
T ss_pred             --------cceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcc
Confidence                    1112234689999999999999999999999999999999998 788888877666666655432  22 23


Q ss_pred             CCChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          309 GQRTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       309 ~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      ..++++.+||.+||+.||++||    +++++++
T Consensus       272 ~~~~~l~~Li~~cl~~dP~~RP----s~~~il~  300 (311)
T d1t46a_         272 HAPAEMYDIMKTCWDADPLKRP----TFKQIVQ  300 (311)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSC----CHHHHHH
T ss_pred             cccHHHHHHHHHHcCCChhHCc----CHHHHHH
Confidence            4679999999999999999999    5888875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=381.34  Aligned_cols=253  Identities=17%  Similarity=0.204  Sum_probs=200.0

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEe-CCeEEE
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLET-DEFLAW  100 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-~~~~~l  100 (412)
                      +-++||+|+||+||+|++..++. +...||||++++..   .......+.+|+++|++++|||||++++++.. +..+++
T Consensus        31 ~~~~iG~G~fg~Vyk~~~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~l  106 (311)
T d1r0pa_          31 FNEVIGRGHFGCVYHGTLLDNDG-KKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  106 (311)
T ss_dssp             EEEEEEEETTEEEEEEEECC-----CEEEEEEEECCCC---CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEE
T ss_pred             cceEEeecCCeEEEEEEEECCCC-EEEEEEEEEECccc---CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEE
Confidence            36789999999999999876432 34458999996532   23445778899999999999999999999765 568999


Q ss_pred             EeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEEEccccccchhhchhh
Q 042539          101 AVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVTLTDFDLSRNLVKKTA  180 (412)
Q Consensus       101 v~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~~~~~~~  180 (412)
                      |||||.+|+|..++.... ..+++..+..++.|++.||.|||+.||+||||||+|||++.++.+||+|||+++.......
T Consensus       107 v~E~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~  185 (311)
T d1r0pa_         107 VLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF  185 (311)
T ss_dssp             EEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTC
T ss_pred             EEEEeecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhcccccc
Confidence            999999999988766443 4577888999999999999999999999999999999999999999999999986532110


Q ss_pred             hhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCCCccceee
Q 042539          181 FEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEEYVSPEVV  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~l  260 (412)
                                                                                 ..........||+.|+|||.+
T Consensus       186 -----------------------------------------------------------~~~~~~~~~~gt~~y~aPE~~  206 (311)
T d1r0pa_         186 -----------------------------------------------------------DSVHNKTGAKLPVKWMALESL  206 (311)
T ss_dssp             -----------------------------------------------------------CCTTCTTCSSCCGGGSCHHHH
T ss_pred             -----------------------------------------------------------ccceecccccccccccChHHH
Confidence                                                                       111122345789999999999


Q ss_pred             cCCCCCchhhHHHHHHHHHHHhhCCCCCCC-CCHHHHHHHHhcCC-C-CCCCCChHHHHHHHHhhhhCCCccCCCCCChh
Q 042539          261 RGDGHEFAVDWWALGILTYEMLYGTTPFRG-KNRKETFRNVLMKT-P-EFVGQRTALTDLIQRLLEKDPVKRLGYLRGAC  337 (412)
Q Consensus       261 ~~~~~~~~~DiwSlGvil~ell~g~~Pf~~-~~~~~~~~~i~~~~-~-~~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~  337 (412)
                      .+..++.++|||||||++|||++|..||.. .+..+....+..+. + ....+++++.+||.+||+.||++||    ++.
T Consensus       207 ~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RP----s~~  282 (311)
T d1r0pa_         207 QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRP----SFS  282 (311)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC----CHH
T ss_pred             hcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCc----CHH
Confidence            999999999999999999999996666654 44444555555432 2 2234678999999999999999999    688


Q ss_pred             hhhcC
Q 042539          338 EIKEH  342 (412)
Q Consensus       338 e~l~h  342 (412)
                      |+++|
T Consensus       283 ei~~~  287 (311)
T d1r0pa_         283 ELVSR  287 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88876

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-49  Score=377.36  Aligned_cols=259  Identities=19%  Similarity=0.236  Sum_probs=196.4

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc-cceeeeeEEeCC
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF-LPKLLGSLETDE   96 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~l~~~~~~~~   96 (412)
                      ++|++++.||+|+||+||+|+++.++    +.||||++......      ..+.+|+++++.++|+| |+.+++++.+++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~----~~vAvK~~~~~~~~------~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~   76 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAG----EEVAIKLECVKTKH------PQLHIESKIYKMMQGGVGIPTIRWCGAEGD   76 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTT----EEEEEEEEESCTTS------CCHHHHHHHHHHSTTSTTCCCEEEEEEETT
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCC----CEEEEEEEchhccC------HHHHHHHHHHHHccCCCcccEEEEEEecCC
Confidence            46999999999999999999998754    45999998765322      23556999999998665 566667778888


Q ss_pred             eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc---CCCEEEccccccc
Q 042539           97 FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ---SGHVTLTDFDLSR  173 (412)
Q Consensus        97 ~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~---~g~vkL~DFGla~  173 (412)
                      ..++|||||. +++...+.. ..+.+++..+..++.|++.||+|||++|||||||||+|||++.   ++.+||+|||+|+
T Consensus        77 ~~~ivme~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~  154 (299)
T d1ckia_          77 YNVMVMELLG-PSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  154 (299)
T ss_dssp             EEEEEEECCC-CBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCE
T ss_pred             EEEEEEEEcC-Cchhhhhhh-ccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcce
Confidence            9999999995 455444433 3356999999999999999999999999999999999999864   4579999999998


Q ss_pred             hhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCcccccCCC
Q 042539          174 NLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVGTEE  253 (412)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  253 (412)
                      .+......                                                        .........+.+||+.
T Consensus       155 ~~~~~~~~--------------------------------------------------------~~~~~~~~~~~~gt~~  178 (299)
T d1ckia_         155 KYRDARTH--------------------------------------------------------QHIPYRENKNLTGTAR  178 (299)
T ss_dssp             ECBCTTTC--------------------------------------------------------CBCCCCBCCSCCCCSS
T ss_pred             eccccccc--------------------------------------------------------cceeccccCCcCCCcc
Confidence            76321110                                                        0011223456789999


Q ss_pred             CccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHh---c---CCC---CCCCCChHHHHHHHHhhhh
Q 042539          254 YVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRKETFRNVL---M---KTP---EFVGQRTALTDLIQRLLEK  324 (412)
Q Consensus       254 Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~---~---~~~---~~~~~~~~~~dli~~~L~~  324 (412)
                      |||||++.+..++.++|||||||++|||++|..||.+.........+.   .   ..+   ....+++++.+||.+||..
T Consensus       179 y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~  258 (299)
T d1ckia_         179 YASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSL  258 (299)
T ss_dssp             SCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHS
T ss_pred             ccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccC
Confidence            999999999999999999999999999999999998865443322221   1   111   1346789999999999999


Q ss_pred             CCCccCCCCCChhhhhcCCCC
Q 042539          325 DPVKRLGYLRGACEIKEHVFF  345 (412)
Q Consensus       325 dP~~R~~~~~~~~e~l~h~ff  345 (412)
                      ||++||++. .+.++++|+|.
T Consensus       259 ~p~~RP~~~-~i~~~l~~~~~  278 (299)
T d1ckia_         259 RFDDKPDYS-YLRQLFRNLFH  278 (299)
T ss_dssp             CTTCCCCHH-HHHHHHHHHHH
T ss_pred             ChhHCcCHH-HHHHHHHHHHH
Confidence            999999531 23455666654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=9.6e-49  Score=372.03  Aligned_cols=247  Identities=19%  Similarity=0.242  Sum_probs=198.9

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCC-CccceeeeeEEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSH-PFLPKLLGSLETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~h-pnIv~l~~~~~~~   95 (412)
                      -++|+++++||+|+||+||+|++..++    +.||||++.+...      ...+.+|+++++.++| +||+.+++++.++
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~----~~vAvK~~~~~~~------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~   73 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNN----QQVAIKFEPRRSD------APQLRDEYRTYKLLAGCTGIPNVYYFGQEG   73 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTT----EEEEEEEEECCTT------SCCHHHHHHHHHHTTTCTTCCCEEEEEEET
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCC----CEEEEEEEccccC------cHHHHHHHHHHHHhcCCCCCCEEEEEeecC
Confidence            368999999999999999999998754    4599999865432      1234568899999975 8999999999999


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEcc-----CCCEEEcccc
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQ-----SGHVTLTDFD  170 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~-----~g~vkL~DFG  170 (412)
                      ...|+||||| |++|..++... ...+++.++..++.|++.||+|||++|||||||||+|||++.     .+.+||+|||
T Consensus        74 ~~~~~vme~~-~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG  151 (293)
T d1csna_          74 LHNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFG  151 (293)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCT
T ss_pred             CccEEEEEec-CCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccc
Confidence            9999999999 78887776543 346999999999999999999999999999999999999975     5789999999


Q ss_pred             ccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCCCccccc
Q 042539          171 LSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGERSNSFVG  250 (412)
Q Consensus       171 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  250 (412)
                      +|+........                                                        .........+++|
T Consensus       152 ~a~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~~G  175 (293)
T d1csna_         152 MVKFYRDPVTK--------------------------------------------------------QHIPYREKKNLSG  175 (293)
T ss_dssp             TCEESBCTTTC--------------------------------------------------------CBCCCCCCCCCCS
T ss_pred             eeEEcccCccc--------------------------------------------------------cceeecccCceEE
Confidence            99876322110                                                        0011123446789


Q ss_pred             CCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCC---HHHHHHHHhcC---CC---CCCCCChHHHHHHHHh
Q 042539          251 TEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKN---RKETFRNVLMK---TP---EFVGQRTALTDLIQRL  321 (412)
Q Consensus       251 t~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~---~~~~~~~i~~~---~~---~~~~~~~~~~dli~~~  321 (412)
                      |+.|||||++.+..++.++|||||||++|||++|..||.+..   ......++...   .+   ....+++++.++|..|
T Consensus       176 T~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~  255 (293)
T d1csna_         176 TARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYA  255 (293)
T ss_dssp             CTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHH
T ss_pred             chhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998643   33333333221   11   1245788999999999


Q ss_pred             hhhCCCccCC
Q 042539          322 LEKDPVKRLG  331 (412)
Q Consensus       322 L~~dP~~R~~  331 (412)
                      +..+|.+||+
T Consensus       256 ~~~~~~~rP~  265 (293)
T d1csna_         256 RNLAFDATPD  265 (293)
T ss_dssp             HHCCTTCCCC
T ss_pred             hcCCcccCcC
Confidence            9999999994

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-48  Score=373.60  Aligned_cols=248  Identities=21%  Similarity=0.233  Sum_probs=189.1

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCccceeeeeEEeCC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPFLPKLLGSLETDE   96 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~   96 (412)
                      .++|.+.+.||+|+||+||+|+..      ++.||||+++.+..     ......+|+..+.+++|||||++++++.+++
T Consensus         2 ~~~~~l~~~iG~G~fg~Vy~~~~~------g~~vAvK~~~~~~~-----~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~   70 (303)
T d1vjya_           2 ARTIVLQESIGKGRFGEVWRGKWR------GEEVAVKIFSSREE-----RSWFREAEIYQTVMLRHENILGFIAADNKDN   70 (303)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEET------TEEEEEEEECGGGH-----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEEC------CEEEEEEEECccch-----hHHHHHHHHHHHhhCCCCcCcceEEEEEeCC
Confidence            468999999999999999999863      34599999965431     1122234666667889999999999997654


Q ss_pred             ----eEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH--------cCceeeeCCCCceEEccCCCE
Q 042539           97 ----FLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN--------MGIAYRDLKPENILIRQSGHV  164 (412)
Q Consensus        97 ----~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~--------~~iiHrDlKp~NiLl~~~g~v  164 (412)
                          .+|+|||||.+|+|..++...   .++..+...++.|++.||.|||+        +|||||||||+|||++.+|.+
T Consensus        71 ~~~~~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~  147 (303)
T d1vjya_          71 GTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC  147 (303)
T ss_dssp             SSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCE
T ss_pred             CcceEEEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCe
Confidence                689999999999999988754   38999999999999999999996        599999999999999999999


Q ss_pred             EEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccccccCCCCC
Q 042539          165 TLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQQSFDNGER  244 (412)
Q Consensus       165 kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (412)
                      ||+|||+++.......                                                           .....
T Consensus       148 Kl~DFGl~~~~~~~~~-----------------------------------------------------------~~~~~  168 (303)
T d1vjya_         148 CIADLGLAVRHDSATD-----------------------------------------------------------TIDIA  168 (303)
T ss_dssp             EECCCTTCEEEETTTT-----------------------------------------------------------EECC-
T ss_pred             EEEecCccccccCCCc-----------------------------------------------------------ceecc
Confidence            9999999986532110                                                           01122


Q ss_pred             CcccccCCCCccceeecCCC------CCchhhHHHHHHHHHHHhhCCCCCCCC---------------CHHHHHHHHhcC
Q 042539          245 SNSFVGTEEYVSPEVVRGDG------HEFAVDWWALGILTYEMLYGTTPFRGK---------------NRKETFRNVLMK  303 (412)
Q Consensus       245 ~~~~~gt~~Y~APE~l~~~~------~~~~~DiwSlGvil~ell~g~~Pf~~~---------------~~~~~~~~i~~~  303 (412)
                      ....+||+.|||||++.+..      ++.++|||||||++|||+||.+||...               ........+...
T Consensus       169 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (303)
T d1vjya_         169 PNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ  248 (303)
T ss_dssp             ---CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS
T ss_pred             ccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhcc
Confidence            33568999999999987653      577899999999999999999887431               122222222221


Q ss_pred             C--CCCCCC------ChHHHHHHHHhhhhCCCccCCCCCChhhhhc
Q 042539          304 T--PEFVGQ------RTALTDLIQRLLEKDPVKRLGYLRGACEIKE  341 (412)
Q Consensus       304 ~--~~~~~~------~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~  341 (412)
                      .  +.++..      ...+.+||.+||+.||++||    ++.|+++
T Consensus       249 ~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rp----s~~ei~~  290 (303)
T d1vjya_         249 KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARL----TALRIKK  290 (303)
T ss_dssp             CCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSC----CHHHHHH
T ss_pred             ccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCc----CHHHHHH
Confidence            1  222111      13588999999999999999    5788775

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-47  Score=370.21  Aligned_cols=253  Identities=23%  Similarity=0.348  Sum_probs=194.7

Q ss_pred             cCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-----------CCccc
Q 042539           18 DNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-----------HPFLP   86 (412)
Q Consensus        18 ~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-----------hpnIv   86 (412)
                      ++|+++++||+|+||+||+|+++.++.    .||||++++...     ....+.+|+++++.++           |+|||
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~----~vAvKvi~~~~~-----~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv   83 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNT----HVAMKIVRGDKV-----YTEAAEDEIKLLQRVNDADNTKEDSMGANHIL   83 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTE----EEEEEEECSCHH-----HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBC
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCC----EEEEEEEecccc-----chHHHHHHHHHHHHhcchhhhhhhhcCcCceE
Confidence            569999999999999999999987554    499999976542     2234566888888775           57899


Q ss_pred             eeeeeEEe--CCeEEEEeeccCCCCc-hhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeeeCCCCceEEccCC
Q 042539           87 KLLGSLET--DEFLAWAVPYCPGGDL-NVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHN-MGIAYRDLKPENILIRQSG  162 (412)
Q Consensus        87 ~l~~~~~~--~~~~~lv~e~~~gg~L-~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~-~~iiHrDlKp~NiLl~~~g  162 (412)
                      ++++++..  ....+++|+++.++.. ...........+++..++.++.||+.||.|||+ .||+||||||+|||++.+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~  163 (362)
T d1q8ya_          84 KLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVD  163 (362)
T ss_dssp             CCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEE
T ss_pred             EEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccC
Confidence            99998864  3567777777665543 333444455679999999999999999999998 8999999999999998776


Q ss_pred             C------EEEccccccchhhchhhhhhhcccCCCCCCCCCCCCcchhhhhhhhhhccCCCCccccccccccCCCCccccc
Q 042539          163 H------VTLTDFDLSRNLVKKTAFEKQSLNNNKFPVLPVTENPKRHRRILTRWLHALPENKTGLKKTKSARVSPVSRRQ  236 (412)
Q Consensus       163 ~------vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (412)
                      .      +|++|||.|....                                                            
T Consensus       164 ~~~~~~~~kl~dfg~s~~~~------------------------------------------------------------  183 (362)
T d1q8ya_         164 SPENLIQIKIADLGNACWYD------------------------------------------------------------  183 (362)
T ss_dssp             TTTTEEEEEECCCTTCEETT------------------------------------------------------------
T ss_pred             cccccceeeEeecccccccc------------------------------------------------------------
Confidence            4      9999999986431                                                            


Q ss_pred             cccCCCCCCcccccCCCCccceeecCCCCCchhhHHHHHHHHHHHhhCCCCCCCCCHH------HHHHHH---hcCC---
Q 042539          237 QSFDNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFRGKNRK------ETFRNV---LMKT---  304 (412)
Q Consensus       237 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~------~~~~~i---~~~~---  304 (412)
                            ......+||+.|+|||++.+..++.++|+||+||++++|++|+.||...+..      +.....   +...   
T Consensus       184 ------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~  257 (362)
T d1q8ya_         184 ------EHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSY  257 (362)
T ss_dssp             ------BCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHH
T ss_pred             ------cccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHH
Confidence                  1223568999999999999999999999999999999999999999764321      111111   1000   


Q ss_pred             ---------------------CC----------------CCCCChHHHHHHHHhhhhCCCccCCCCCChhhhhcCCCCCC
Q 042539          305 ---------------------PE----------------FVGQRTALTDLIQRLLEKDPVKRLGYLRGACEIKEHVFFKG  347 (412)
Q Consensus       305 ---------------------~~----------------~~~~~~~~~dli~~~L~~dP~~R~~~~~~~~e~l~h~ff~~  347 (412)
                                           ..                ....++++.|||.+||.+||.+||    |++|+|+||||++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rp----ta~e~L~Hp~f~~  333 (362)
T d1q8ya_         258 LLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA----DAGGLVNHPWLKD  333 (362)
T ss_dssp             HHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB----CHHHHHTCGGGTT
T ss_pred             HhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCc----CHHHHhcCcccCC
Confidence                                 00                001236799999999999999999    7999999999996


Q ss_pred             CC
Q 042539          348 VR  349 (412)
Q Consensus       348 ~~  349 (412)
                      +.
T Consensus       334 ~~  335 (362)
T d1q8ya_         334 TL  335 (362)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=8.8e-27  Score=205.97  Aligned_cols=137  Identities=22%  Similarity=0.197  Sum_probs=107.0

Q ss_pred             ceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhh--------------hhHHHHHHHHHHHHHHhhcCCCcc
Q 042539           20 LKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLH--------------AKHEAERRARWEIRVLSRLSHPFL   85 (412)
Q Consensus        20 y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~--------------~~~~~~~~~~~Ei~il~~l~hpnI   85 (412)
                      +.+.++||+|+||+||+|++.     +++.||||+++.....              ..........+|...+.++.|.++
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-----~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v   76 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAV   76 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             chhCCEeeeCcceEEEEEECC-----CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence            457899999999999999874     2345999987643211              112233455678999999999999


Q ss_pred             ceeeeeEEeCCeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeeCCCCceEEccCCCEE
Q 042539           86 PKLLGSLETDEFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLHNMGIAYRDLKPENILIRQSGHVT  165 (412)
Q Consensus        86 v~l~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH~~~iiHrDlKp~NiLl~~~g~vk  165 (412)
                      +..+++..    .+++|||+.+..+..         +++..+..++.|++.+|+|||++||+||||||+|||++.++ ++
T Consensus        77 ~~~~~~~~----~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~~-~~  142 (191)
T d1zara2          77 PKVYAWEG----NAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG-IW  142 (191)
T ss_dssp             CCEEEEET----TEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETTE-EE
T ss_pred             ceEEEecC----CEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCCC-EE
Confidence            98886632    379999998876532         45566788999999999999999999999999999998654 89


Q ss_pred             Eccccccchh
Q 042539          166 LTDFDLSRNL  175 (412)
Q Consensus       166 L~DFGla~~~  175 (412)
                      |+|||+|+..
T Consensus       143 liDFG~a~~~  152 (191)
T d1zara2         143 IIDFPQSVEV  152 (191)
T ss_dssp             ECCCTTCEET
T ss_pred             EEECCCcccC
Confidence            9999999765

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.61  E-value=1.3e-07  Score=84.95  Aligned_cols=141  Identities=14%  Similarity=0.096  Sum_probs=92.7

Q ss_pred             ccCceeeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeeeEEeC
Q 042539           17 LDNLKALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGSLETD   95 (412)
Q Consensus        17 ~~~y~~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~~~~~   95 (412)
                      ++.|++.+..+.++.+.||++....      ..+.+|.........    ...+.+|..++..+. +--+.+++.+..++
T Consensus        13 ~~~~~~~~~~~G~s~~~v~rv~~~~------~~~vlk~~~~~~~~~----~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~   82 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPAKVYKLVGEN------ENLYLKMTDSRYKGT----TYDVEREKDMMLWLEGKLPVPKVLHFERHD   82 (263)
T ss_dssp             HTTSEEEECSCCCSSSEEEEEECSS------CEEEEEEECGGGTTS----TTCHHHHHHHHHHHTTTSCCCCEEEEEEET
T ss_pred             hhceEEEEcCCCCCCCcEEEEEeCC------CeEEEEEcCCCcccc----hhhHHHHHHHHHHHhccCCCCcEEEEEecC
Confidence            4678888887777778999875321      227888875543222    123445888888775 44477888888888


Q ss_pred             CeEEEEeeccCCCCchhHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---------------------------------
Q 042539           96 EFLAWAVPYCPGGDLNVLRYKQNDRVFSPSVIRFYLSEIICAIEHLH---------------------------------  142 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L~~~~~~~~~~~l~~~~~~~~~~qi~~aL~yLH---------------------------------  142 (412)
                      +..|+||++++|..+......       ......++.++...+..||                                 
T Consensus        83 ~~~~lv~~~l~G~~~~~~~~~-------~~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (263)
T d1j7la_          83 GWSNLLMSEADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDC  155 (263)
T ss_dssp             TEEEEEEECCSSEEHHHHTTT-------CSCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCG
T ss_pred             CceEEEEEecccccccccccc-------cccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhh
Confidence            999999999999876433211       1111112223333333333                                 


Q ss_pred             --------------------H------cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          143 --------------------N------MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       143 --------------------~------~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                                          +      ..++|+|+.|.|||++.++.+-|+||+.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         156 ENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             GGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             hcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                                1      1379999999999998766667999998864

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=9.7e-06  Score=77.28  Aligned_cols=83  Identities=20%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             eeeeeeccCceEEEEEEEcCCCCCCCCceEEeeecchh-hhhh--HHHHHHHHHHHHHHhhcC-C--CccceeeeeEEeC
Q 042539           22 ALKILGKGAMGTVFLVHDRAADPTARCPFALKVVDKST-LHAK--HEAERRARWEIRVLSRLS-H--PFLPKLLGSLETD   95 (412)
Q Consensus        22 ~~~~LG~G~fg~V~la~~~~~~~~~~~~vAiK~i~~~~-~~~~--~~~~~~~~~Ei~il~~l~-h--pnIv~l~~~~~~~   95 (412)
                      -.+.||.|....||++.+...+.    .|++|.-.... ....  .....+..+|+.+|+.+. +  ..+++++.+  +.
T Consensus        30 ~~~eig~G~~N~vfrV~~~~~~~----svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~  103 (392)
T d2pula1          30 TCQEIGDGNLNYVFHIYDQEHDR----ALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DT  103 (392)
T ss_dssp             EEEECCSSSSEEEEEEEC----C----EEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ET
T ss_pred             eEEEeCCCceEeEEEEEeCCCCe----EEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cC
Confidence            35679999999999998655333    38888543210 0000  011234456888888774 3  345666544  44


Q ss_pred             CeEEEEeeccCCCCc
Q 042539           96 EFLAWAVPYCPGGDL  110 (412)
Q Consensus        96 ~~~~lv~e~~~gg~L  110 (412)
                      +..++|||++.+..+
T Consensus       104 ~~~~lvmE~L~~~~~  118 (392)
T d2pula1         104 EMAVTVMEDLSHLKI  118 (392)
T ss_dssp             TTTEEEECCCTTSEE
T ss_pred             CCCEEEEeccCCccc
Confidence            556789999977544

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.90  E-value=3.2e-05  Score=68.32  Aligned_cols=137  Identities=15%  Similarity=0.038  Sum_probs=79.9

Q ss_pred             eeccC-ceEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC--CCccceeeeeEEeCCeEEEEe
Q 042539           26 LGKGA-MGTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS--HPFLPKLLGSLETDEFLAWAV  102 (412)
Q Consensus        26 LG~G~-fg~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~--hpnIv~l~~~~~~~~~~~lv~  102 (412)
                      +..|. -+.||++....     +..+.+|.-......       .+.+|+.+++.+.  .--+.+++.+..+++..++||
T Consensus        18 ~~~G~s~~~v~r~~~~~-----~~~~vlK~~~~~~~~-------~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~   85 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQG-----RPVLFVKTDLSGALN-------ELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL   85 (255)
T ss_dssp             CSCTTSSCEEEEEECTT-----SCCEEEEEECSCTTS-------CHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred             cCCcccCCeEEEEEeCC-----CCEEEEEeCCccCHh-------HHHHHHHHHHHHHhcCCCCCceeeecccccceEEEE
Confidence            34444 47899887542     223788976544321       2344777777774  233678888888888899999


Q ss_pred             eccCCCCchhHH--------------Hh-hC----CCCCCHHHHHH-------H---------------HHHHHHHHHHH
Q 042539          103 PYCPGGDLNVLR--------------YK-QN----DRVFSPSVIRF-------Y---------------LSEIICAIEHL  141 (412)
Q Consensus       103 e~~~gg~L~~~~--------------~~-~~----~~~l~~~~~~~-------~---------------~~qi~~aL~yL  141 (412)
                      ++++|.++....              .. +.    ...+.......       +               .......+..+
T Consensus        86 ~~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (255)
T d1nd4a_          86 GEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARL  165 (255)
T ss_dssp             ECCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHH
T ss_pred             EeeeccccccccccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH
Confidence            999987653210              00 00    00000000000       0               00011123333


Q ss_pred             HHc-------CceeeeCCCCceEEccCCCEEEccccccch
Q 042539          142 HNM-------GIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       142 H~~-------~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .+.       .+||+|+.|.|||++.++.+-|+||+.+..
T Consensus       166 ~~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         166 KARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             HHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            332       389999999999998776678999998864

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.18  E-value=0.0005  Score=64.90  Aligned_cols=84  Identities=21%  Similarity=0.258  Sum_probs=52.9

Q ss_pred             CccCceeeeeeeccCceEEEEEEEcCCCC---CCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcC-CCccceeeee
Q 042539           16 DLDNLKALKILGKGAMGTVFLVHDRAADP---TARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLS-HPFLPKLLGS   91 (412)
Q Consensus        16 ~~~~y~~~~~LG~G~fg~V~la~~~~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~-hpnIv~l~~~   91 (412)
                      ..+++++ +.|+.|---.+|++.......   .....|.+++.-....     .. ...+|..+++.+. +.-..+++++
T Consensus        41 ~~~~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~-----~i-dr~~E~~i~~~ls~~gl~Pkll~~  113 (395)
T d1nw1a_          41 PLEHLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET-----ES-HLVAESVIFTLLSERHLGPKLYGI  113 (395)
T ss_dssp             CGGGEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC-----HH-HHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred             CccceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcch-----hh-HHHHHHHHHHHHHhCCCCCeEEEE
Confidence            3445544 678889999999998654321   1223366666532211     11 2235888888886 5556688887


Q ss_pred             EEeCCeEEEEeeccCCCCc
Q 042539           92 LETDEFLAWAVPYCPGGDL  110 (412)
Q Consensus        92 ~~~~~~~~lv~e~~~gg~L  110 (412)
                      +.+    .+||||++|..+
T Consensus       114 ~~~----g~I~efi~g~~l  128 (395)
T d1nw1a_         114 FSG----GRLEEYIPSRPL  128 (395)
T ss_dssp             ETT----EEEECCCCEEEC
T ss_pred             cCC----ceEEEEeccccC
Confidence            754    689999988655

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0029  Score=57.75  Aligned_cols=131  Identities=18%  Similarity=0.176  Sum_probs=72.0

Q ss_pred             eEEEEEEEcCCCCCCCCceEEeeecchhhhhhHHHHHHHHHHHHHHhhcCCCc--cceee-----eeEEeCCeEEEEeec
Q 042539           32 GTVFLVHDRAADPTARCPFALKVVDKSTLHAKHEAERRARWEIRVLSRLSHPF--LPKLL-----GSLETDEFLAWAVPY  104 (412)
Q Consensus        32 g~V~la~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~Ei~il~~l~hpn--Iv~l~-----~~~~~~~~~~lv~e~  104 (412)
                      -.||++...     .+..|++|+.......     ...+..|+..+..|....  ++..+     ..+..+...+.++++
T Consensus        36 N~vy~v~~~-----dg~~~VlK~~rp~~~s-----~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~  105 (325)
T d1zyla1          36 NRVYQFQDE-----DRRRFVVKFYRPERWT-----ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPS  105 (325)
T ss_dssp             SEEEEECCT-----TCCCEEEEEECTTTSC-----HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEEC
T ss_pred             ceeEEEEcC-----CCCEEEEEEeCCCCCC-----HHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEee
Confidence            589988654     2344999998654321     122334777777775211  11111     134556778899999


Q ss_pred             cCCCCchh----HHHh----------h--C------------------------CCCCCHHHHHHHHHHHHHHHHHHHH-
Q 042539          105 CPGGDLNV----LRYK----------Q--N------------------------DRVFSPSVIRFYLSEIICAIEHLHN-  143 (412)
Q Consensus       105 ~~gg~L~~----~~~~----------~--~------------------------~~~l~~~~~~~~~~qi~~aL~yLH~-  143 (412)
                      +.|..+..    ....          .  .                        ...++......+...+-..++.+.. 
T Consensus       106 ~~G~~~~~~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  185 (325)
T d1zyla1         106 VGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAH  185 (325)
T ss_dssp             CCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCCCCCCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            98754321    0000          0  0                        0011222222222223333333332 


Q ss_pred             ------cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          144 ------MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       144 ------~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                            .++||+|+.+.|||++. | ..++||+-+..
T Consensus       186 ~~~~~p~~liHgDlh~~NvL~~~-~-~~~IDFdd~~~  220 (325)
T d1zyla1         186 WREDFTVLRLHGDCHAGNILWRD-G-PMFVDLDDARN  220 (325)
T ss_dssp             CCSCSCCEECCSSCSGGGEEESS-S-EEECCCTTCCE
T ss_pred             ccccCCceeecCCCCcccEEEeC-C-ceEEechhccc
Confidence                  36899999999999964 4 45899998865

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.62  E-value=0.0041  Score=56.21  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=27.6

Q ss_pred             cCceeeeCCCCceEEccCCCEEEccccccch
Q 042539          144 MGIAYRDLKPENILIRQSGHVTLTDFDLSRN  174 (412)
Q Consensus       144 ~~iiHrDlKp~NiLl~~~g~vkL~DFGla~~  174 (412)
                      .|+||+|+.++|++++.++..-|+||+.|..
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccccCCcchhhhhcccccceeEeccccccc
Confidence            4799999999999999887778999999864