Citrus Sinensis ID: 042556

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
MTTLFPSSSSSATVIPIATSTSISPFSQKTSQLSIVGKHKVTCKATNEQNPSSKDSLNKLDRRDVLLVGLGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKADTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKPSPRNLAKKRVAKAFGVAQAAELKRKLIPRNVFPIVLDRVISTVVPRPKKSRSKKEKEEEEEVLVVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVPHKHKHGKKMKTSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFVKD
cccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccEEEEccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccccccHHHHHHHHEEEcccccccccEEEEEEEEcccccccccccccccccEEEEEccccccccccccEEEEEEcHHHHHHccccccccEEEEEEEcccccEEEEccEEEEEEcc
cccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccccccccccccccccccEcccccccccccEEcccHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccHHHcccccccccccccccccccccEcccccccccccccccHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccEEEEcccccEEEEEcccccccccccccHHHcccccEEEEcccHHHHHHHHHHHHccccccccccHHccccccccccccccEEEEccccccHHHcccEEcccccccccccccccccccccccccccccHHHHccccccccccccEEcccEEEEEEccccccccccccccccEEEEEEcEEEccccEEEEEEEEEccccccccccccccEcEEEEEcccccccccccEEEEEEcHHHHHHHcccccccEEEEEEEEcccccEEEEcEEEEEEEcc
mttlfpsssssatvipiatstsispfsqktsqlsIVGKHkvtckatneqnpsskdslnkldrrdVLLVGLGGlygvsnlsssdpfafaapvsapdiskcgkadtttdnccppkstniinfklppsnsslrvrpaahlsddAYIAKYSKAIELMkalpaddprsfmnqanvhcaycdgaydqvgfpnldlqihnswlffpfhrYYLYFYEKILGkliddptfalpfwnwdsppgmqmppmfanpnsplydklrnanhqpptlldldynetdddqtttkkdqisSNLTIMYRQMVsngktsklflgspyragddpepgsgsienaphnpvhlwcgdntqpnlenmgnfysagrdpiffahhsnIDRMWTIWRTlggkrtnftepdwldsaflfydENANLVRVKVRdcldtknlgyvyqdveipwqnskpsprnlAKKRVAKAFGVAQAAELKrkliprnvfpiVLDRVistvvprpkksrskkekeeeeeVLVVDnieferdarvkfdvyinededempigpdnsefagsfvnvphkhkhgkkmktsLRLGLTDLLedlgaedddsvIVTLVPKfgkglariggikidfvkd
mttlfpsssssatvipiatstsispfsqkTSQLSIVGKHKvtckatneqnpsskdslnkldRRDVLLVGLGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKADTTTDNCCPPKSTniinfklppsnssLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLDYNETDddqtttkkdqissnlTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGyvyqdveipwqnskpsprNLAKKRVAKAFGVAQaaelkrkliprnvfpivldrvistvvprpkksrskkekeeeeevlvvdnieferdarvKFDVYINEDEDEMPIGPDNSEFAGSFVNVphkhkhgkkmktslRLGLTDLLEdlgaedddsVIVTLvpkfgkglariggikidfvkd
MTTLFPSSSSSATVIPIATSTSISPFSQKTSQLSIVGKHKVTCKATNEQNPSSKDSLNKLDRRDvllvglgglygvsnlsssDPFAFAAPVSAPDISKCGKADTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLDYNEtdddqtttkkdqISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKPSPRNLAKKRVAKAFGVAQAAELKRKLIPRNVFPIVLDRVISTvvprpkksrskkekeeeeevlvvDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVPHKHKHGKKMKtslrlgltdlledlgaedddsVIVTLVPKFGKGLARIGGIKIDFVKD
*************************************************************RRDVLLVGLGGLYGVSNLSSSDPFAFAAPV*******C*******DNCCP***TNIINFK*************AHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWD********************************************************TIMYR*************************************VHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQ************RVAKAFGVAQAAELKRKLIPRNVFPIVLDRVISTVV*****************VLVVDNIEFERDARVKFDVYIN***********************************LRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFV**
********SSSATVI************************************************DVLLVGLGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKADTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALP*DDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKPSP***********************LIPRNVFPIVLDR*************************VVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNV***********TSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFVKD
************TVIPIATSTSISPFSQKTSQLSIVGKHKVTCKATNEQNPSSKDSLNKLDRRDVLLVGLGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKADTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLDYNET*********DQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKPSPRNLAKKRVAKAFGVAQAAELKRKLIPRNVFPIVLDRVISTVV******************LVVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVP**********TSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFVKD
************************************GKHKVTCKATN**********NKLDRRDVLLVGLGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKADTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKP*****************************NVFPIVLDRVISTVVPRPK**********EEEVLVVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVPHKHKHGKKMKTSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFVKD
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SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTTLFPSSSSSATVIPIATSTSISPFSQKTSQLSIVGKHKVTCKATNEQNPSSKDSLNKLDRRDVLLVGLGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKADTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKPSPRNLAKKRVAKAFGVAQAAELKRKLIPRNVFPIVLDRVISTVVPRPKKSRSKKEKEEEEEVLVVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVPHKHKHGKKMKTSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFVKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query591 2.2.26 [Sep-21-2011]
P43309593 Polyphenol oxidase, chlor N/A no 0.928 0.925 0.658 0.0
Q06215606 Polyphenol oxidase A1, ch N/A no 0.944 0.920 0.570 0.0
Q9FRX6562 Aureusidin synthase OS=An N/A no 0.915 0.962 0.569 1e-178
P43311607 Polyphenol oxidase, chlor yes no 0.981 0.955 0.553 1e-174
Q6UIL3584 (+)-larreatricin hydroxyl N/A no 0.945 0.957 0.524 1e-166
Q9MB14588 Polyphenol oxidase II, ch N/A no 0.890 0.894 0.553 1e-163
Q9ZP19496 Polyphenol oxidase I, chl N/A no 0.803 0.957 0.549 1e-156
Q06355588 Catechol oxidase B, chlor N/A no 0.942 0.947 0.457 1e-141
Q08296585 Polyphenol oxidase F, chl N/A no 0.934 0.943 0.448 1e-139
Q08307587 Polyphenol oxidase E, chl N/A no 0.900 0.906 0.461 1e-137
>sp|P43309|PPO_MALDO Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1 Back     alignment and function desciption
 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/589 (65%), Positives = 458/589 (77%), Gaps = 40/589 (6%)

Query: 23  ISPFSQKTSQLSIVGK------HKVTCKATNEQNPSSKDSLNKLDRRDVL--------LV 68
           +SPFSQ  SQ+S++ K       KV+CKATN  N  +  + +KLDRR+VL        + 
Sbjct: 22  LSPFSQNNSQVSLLTKPKRSFARKVSCKATN--NDQNDQAQSKLDRRNVLLGLGGLYGVA 79

Query: 69  GLGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKAD----TTTDNCCPPKSTNIINFKLPP 124
           G+G          +DPFAFA P++ PD+SKCG AD        NCCPP ST II+FKLP 
Sbjct: 80  GMG----------TDPFAFAKPIAPPDVSKCGPADLPQGAVPTNCCPPPSTKIIDFKLP- 128

Query: 125 SNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGF 184
           + + LR+RP AH  D AY  KY KA+ELMKALP DDPRSF  QA VHCAYCDGAYDQVGF
Sbjct: 129 APAKLRIRPPAHAVDQAYRDKYYKAMELMKALPDDDPRSFKQQAAVHCAYCDGAYDQVGF 188

Query: 185 PNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPN 244
           P L+LQIHNSWLFFPFHRYYLYF+EKILGKLI+DPTFALPFWNWDSP GM +P ++A+P 
Sbjct: 189 PELELQIHNSWLFFPFHRYYLYFFEKILGKLINDPTFALPFWNWDSPAGMPLPAIYADPK 248

Query: 245 SPLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLG 304
           SPLYDKLR+ANHQPPTL+DLDYN T+D+   +K+  I++NL IMYRQMVSN K +KLF G
Sbjct: 249 SPLYDKLRSANHQPPTLVDLDYNGTEDN--VSKETTINANLKIMYRQMVSNSKNAKLFFG 306

Query: 305 SPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDR 364
           +PYRAGD+P+PG GSIE  PH PVHLW GDNTQPN E+MGNFYSAGRDPIFFAHHSN+DR
Sbjct: 307 NPYRAGDEPDPGGGSIEGTPHAPVHLWTGDNTQPNFEDMGNFYSAGRDPIFFAHHSNVDR 366

Query: 365 MWTIWRTLGGKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQ 424
           MW+IW+TLGGKRT+ T+ DWLDS FLFY+ENA LVRVKVRDCL+TKNLGYVYQDV+IPW 
Sbjct: 367 MWSIWKTLGGKRTDLTDSDWLDSGFLFYNENAELVRVKVRDCLETKNLGYVYQDVDIPWL 426

Query: 425 NSKPSPR--NLAKKRVAKAFGVAQAA-ELKRKLIPRNVFPIVLDRVISTVVPRP-KKSRS 480
           +SKP+PR   +A  +VAK  GVA AA     K++    FPI L   ISTVV RP +K RS
Sbjct: 427 SSKPTPRRAKVALSKVAKKLGVAHAAVASSSKVVAGTEFPISLGSKISTVVKRPKQKKRS 486

Query: 481 KKEKEEEEEVLVVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVPHKHKHG 540
           KK KE+EEE+LV++ IEF+RD  VKFDVY+N D D++P GPD +EFAGSFV+VPH HKH 
Sbjct: 487 KKAKEDEEEILVIEGIEFDRDVAVKFDVYVN-DVDDLPSGPDKTEFAGSFVSVPHSHKHK 545

Query: 541 KKMKTSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFV 589
           KKM T LRLGLTDLLE++ AEDDDSV+VTLVPKFG    +IGGIKI+F 
Sbjct: 546 KKMNTILRLGLTDLLEEIEAEDDDSVVVTLVPKFGA--VKIGGIKIEFA 592
Catalyzes the oxidation of mono- and o-diphenols to o-diquinones.
Malus domestica (taxid: 3750)
EC: 1EC: .EC: 1EC: 0EC: .EC: 3EC: .EC: 1
>sp|Q06215|PPO_VICFA Polyphenol oxidase A1, chloroplastic OS=Vicia faba PE=1 SV=1 Back     alignment and function description
>sp|Q9FRX6|AS1_ANTMA Aureusidin synthase OS=Antirrhinum majus GN=AS1 PE=1 SV=1 Back     alignment and function description
>sp|P43311|PPO_VITVI Polyphenol oxidase, chloroplastic OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q6UIL3|LAHY_LARTR (+)-larreatricin hydroxylase, chloroplastic OS=Larrea tridentata PE=1 SV=1 Back     alignment and function description
>sp|Q9MB14|PPO2_IPOBA Polyphenol oxidase II, chloroplastic OS=Ipomoea batatas GN=co-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZP19|PPO1_IPOBA Polyphenol oxidase I, chloroplastic OS=Ipomoea batatas GN=co-1 PE=1 SV=1 Back     alignment and function description
>sp|Q06355|PPOB_SOLTU Catechol oxidase B, chloroplastic (Fragment) OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q08296|PPOF_SOLLC Polyphenol oxidase F, chloroplastic OS=Solanum lycopersicum PE=3 SV=1 Back     alignment and function description
>sp|Q08307|PPOE_SOLLC Polyphenol oxidase E, chloroplastic OS=Solanum lycopersicum PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
373882306606 polyphenol oxidase [Canarium album] 0.954 0.930 0.741 0.0
343157314590 polyphenol oxidase [Populus euphratica] 0.932 0.933 0.693 0.0
313758569594 polyphenol oxidase [Ziziphus jujuba] 0.962 0.957 0.666 0.0
255555963589 Polyphenol oxidase, chloroplast precurso 0.937 0.940 0.697 0.0
397648619593 chloroplast polyphenol oxidase I [Eriobo 0.939 0.935 0.652 0.0
224113975590 polyphenol oxidase [Populus trichocarpa] 0.932 0.933 0.688 0.0
51872305590 polyphenol oxidase [Populus trichocarpa 0.932 0.933 0.686 0.0
222093457595 polyphenoloxidase [Camellia nitidissima] 0.940 0.934 0.655 0.0
1172584593 RecName: Full=Polyphenol oxidase, chloro 0.928 0.925 0.658 0.0
58047496589 polyphenol oxidase [Prunus salicina var. 0.971 0.974 0.649 0.0
>gi|373882306|gb|AEY78528.1| polyphenol oxidase [Canarium album] Back     alignment and taxonomy information
 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/588 (74%), Positives = 492/588 (83%), Gaps = 24/588 (4%)

Query: 23  ISPFSQKTSQLSIVGKHK------VTCKATN--EQNP--SSKD---SLNKLDRRDVLLVG 69
            SP  +K SQ SIV K K      ++ KATN  E  P  SS D   SLNK DRRDVL VG
Sbjct: 24  FSPSFRKPSQHSIVKKRKQYFVPRISYKATNGDEHYPKFSSNDGQTSLNKFDRRDVL-VG 82

Query: 70  LGGLYGVSNLSSSDPFAFAAPVSAPDISKCGKAD----TTTDNCCPPKSTNIINFKLPPS 125
           LGG  G ++LSS DPFA AAPVSAPD++KCGKA+        NCCPP S  I+ FKL PS
Sbjct: 83  LGGFCGFASLSS-DPFAVAAPVSAPDLAKCGKANLPAGAKQTNCCPPTSKKILGFKLHPS 141

Query: 126 NSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFP 185
           N+ LR+RPAAHL DDAYIAKYS+AIELMKALPADDPR FM QANVHCAYCDGAYDQ+GFP
Sbjct: 142 NAPLRIRPAAHLVDDAYIAKYSRAIELMKALPADDPRGFMQQANVHCAYCDGAYDQIGFP 201

Query: 186 NLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNS 245
           NL+LQ+HNSWLFFPFHRYYLYFYEKILGKLI+DPTFALPFWNWDSPPGMQMP M+ANP S
Sbjct: 202 NLELQVHNSWLFFPFHRYYLYFYEKILGKLIEDPTFALPFWNWDSPPGMQMPAMYANPKS 261

Query: 246 PLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGS 305
           PLYD  RNA+HQPPTL+DLDYN T  D+TTT KDQ+SSNL IMYRQMVSNGKT+KLF G+
Sbjct: 262 PLYDNFRNASHQPPTLVDLDYNRT--DETTTNKDQLSSNLKIMYRQMVSNGKTAKLFFGN 319

Query: 306 PYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRM 365
            YRAGD+P+PG GSIEN PH PVHLWCGD TQPNLE+MGNFYSA RDPIF++HHSNIDRM
Sbjct: 320 AYRAGDEPDPGLGSIENIPHGPVHLWCGDKTQPNLEDMGNFYSAARDPIFYSHHSNIDRM 379

Query: 366 WTIWRTLGG-KRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQ 424
           WTIW+TLGG KR  FT+PDWLD+ FLFYDENANLVRVKVRDCLD K LGY YQ V+IPW 
Sbjct: 380 WTIWKTLGGKKRKEFTDPDWLDAGFLFYDENANLVRVKVRDCLDNKKLGYDYQKVDIPWL 439

Query: 425 NSKPSPRNLAKKRVAKAFGVAQAAELKR-KLIPRNVFPIVLDRVISTVVPRPKKSRSKKE 483
           N+KP+PR     +V   FGVA AAE +R +L  R+ FP+VLD+ +ST+VPRPKKSRSKKE
Sbjct: 440 NTKPTPRKRIVNKVRSTFGVAHAAETRRIQLTARSQFPLVLDKTMSTLVPRPKKSRSKKE 499

Query: 484 KEEEEEVLVVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVPHKHKHGKKM 543
           KEEEEEVLV++ I+FERDA+VKFDVYIN DE ++P GPD++EFAGSFVNVPHKHKHGKK+
Sbjct: 500 KEEEEEVLVIEGIDFERDAQVKFDVYIN-DEHDVPSGPDDTEFAGSFVNVPHKHKHGKKI 558

Query: 544 KTSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDFVKD 591
           KT LRLGLTDL+EDL AEDDDSV+VTLVP++GKGLARIGGIKI+F  D
Sbjct: 559 KTCLRLGLTDLIEDLEAEDDDSVVVTLVPRYGKGLARIGGIKIEFYDD 606

Source: Canarium album

Species: Canarium album

Genus: Canarium

Family: Burseraceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|343157314|gb|AEL95440.1| polyphenol oxidase [Populus euphratica] Back     alignment and taxonomy information
>gi|313758569|gb|ADR78836.1| polyphenol oxidase [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|255555963|ref|XP_002519016.1| Polyphenol oxidase, chloroplast precursor, putative [Ricinus communis] gi|223541679|gb|EEF43227.1| Polyphenol oxidase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|397648619|gb|AFO55217.1| chloroplast polyphenol oxidase I [Eriobotrya japonica] Back     alignment and taxonomy information
>gi|224113975|ref|XP_002316632.1| polyphenol oxidase [Populus trichocarpa] gi|222859697|gb|EEE97244.1| polyphenol oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|51872305|gb|AAU12257.1| polyphenol oxidase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|222093457|gb|ACM43505.1| polyphenoloxidase [Camellia nitidissima] Back     alignment and taxonomy information
>gi|1172584|sp|P43309.1|PPO_MALDO RecName: Full=Polyphenol oxidase, chloroplastic; Short=PPO; AltName: Full=Catechol oxidase; Flags: Precursor gi|507280|gb|AAA69902.1| polyphenol oxidase [Malus x domestica] Back     alignment and taxonomy information
>gi|58047496|gb|AAW65103.1| polyphenol oxidase [Prunus salicina var. cordata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
UNIPROTKB|Q9FRX6562 AS1 "Aureusidin synthase" [Ant 0.829 0.871 0.541 4e-145
UNIPROTKB|Q6UIL3584 Q6UIL3 "(+)-larreatricin hydro 0.961 0.972 0.455 6.7e-136
UNIPROTKB|Q5LTK9487 SPO1405 "Tyrosinase domain pro 0.087 0.106 0.452 2.8e-11
TIGR_CMR|SPO_1405487 SPO_1405 "tyrosinase domain pr 0.087 0.106 0.452 2.8e-11
UNIPROTKB|A7BHQ9 625 tyr1 "Tyrosinase" [Pholiota na 0.196 0.185 0.305 5.5e-08
ASPGD|ASPL0000006917369 AN10821 [Emericella nidulans ( 0.098 0.157 0.363 5.7e-08
UNIPROTKB|G4N005404 MGG_06169 "Uncharacterized pro 0.049 0.071 0.482 1.4e-06
WB|WBGene00010661681 tyr-2 [Caenorhabditis elegans 0.087 0.076 0.377 2.1e-06
UNIPROTKB|G5EHG8377 MGCH7_ch7g109 "Uncharacterized 0.047 0.074 0.571 3e-06
UNIPROTKB|B1VTI5306 griF "O-aminophenol oxidase" [ 0.065 0.127 0.414 1.3e-05
UNIPROTKB|Q9FRX6 AS1 "Aureusidin synthase" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 274/506 (54%), Positives = 337/506 (66%)

Query:    90 PVSAPDISKCGKAD----TTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAK 145
             P++APD++KCG+ D    T   NCCPP    II+F+LPP ++++RVR AAHL DDAYIAK
Sbjct:    62 PIAAPDVTKCGQPDLPPGTAPINCCPPIPAKIIDFELPPPSTTMRVRRAAHLVDDAYIAK 121

Query:   146 YSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYL 205
             + KA+ELM+ALP DDPRSF  QANVHCAYC GAY+Q GF NL LQIH SWLFFPFHRYY+
Sbjct:   122 FKKAVELMRALPEDDPRSFKQQANVHCAYCAGAYNQAGFTNLKLQIHRSWLFFPFHRYYI 181

Query:   206 YFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDLD 265
             YF+E+ILGKLI+D TFALPFWN+DSP GM +P MF + NS LYD LR++NHQPPT++DL+
Sbjct:   182 YFFERILGKLINDTTFALPFWNYDSPGGMTIPSMFIDTNSSLYDSLRDSNHQPPTIVDLN 241

Query:   266 YNEXXXXXXXXXXXXISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPH 325
             Y              +  NL I+YRQMVS+ KT +LF G PYR GD   PG GSIE  PH
Sbjct:   242 YAFSDSDNTTTPEEQMIINLKIVYRQMVSSAKTPQLFFGRPYRRGDQEFPGVGSIELVPH 301

Query:   326 NPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGG-KRTNFTEPDW 384
               +HLW G    P  ENMG FYS  RDPIFFAHHSN+DRMW+IW+TLGG +RT+ T+PD+
Sbjct:   302 GMIHLWTGSENTPYGENMGAFYSTARDPIFFAHHSNVDRMWSIWKTLGGPRRTDLTDPDF 361

Query:   385 LDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKPSPRNLAKKRVAKAFGV 444
             LD++F+FYDENA +VRVKVRDCLD K LGYVYQDVEIPW N++P+P+      + K F  
Sbjct:   362 LDASFVFYDENAEMVRVKVRDCLDEKKLGYVYQDVEIPWLNTRPTPK--VSPSLLKKFHR 419

Query:   445 AQAAELKRKLIPRNVFPIVLDRVISTXXXXXXXXXXXXXXXXXXXXXXXDNIEFERD-AR 503
                A       PR VFP +LDRV+                         + IE ERD   
Sbjct:   420 TNTAN------PRQVFPAILDRVLKVIVTRPKKTRSRKEKDELEEILVIEGIELERDHGH 473

Query:   504 VKFDVYINEDEDEMP-IGPDNSEFAGSFVNVPHKHKHGKKMKXXXXXXXX-XXXXXXXXX 561
             VKFDVYIN DED++  I P+N+EFAGSFV++ HK   GK+ K                  
Sbjct:   474 VKFDVYINADEDDLAVISPENAEFAGSFVSLWHKPIKGKRTKTQLLTLSICDILEDLDAD 533

Query:   562 XXXXVIVTLVPKFGKGLARIGGIKID 587
                 V+VTLVP+      +I  +KI+
Sbjct:   534 EDDYVLVTLVPRNAGDAIKIHNVKIE 559
GO:0005507 "copper ion binding" evidence=IDA
GO:0005775 "vacuolar lumen" evidence=IDA
GO:0033793 "aureusidin synthase activity" evidence=IDA
GO:0046148 "pigment biosynthetic process" evidence=IMP;IDA
UNIPROTKB|Q6UIL3 Q6UIL3 "(+)-larreatricin hydroxylase, chloroplastic" [Larrea tridentata (taxid:66636)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LTK9 SPO1405 "Tyrosinase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1405 SPO_1405 "tyrosinase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|A7BHQ9 tyr1 "Tyrosinase" [Pholiota nameko (taxid:61267)] Back     alignment and assigned GO terms
ASPGD|ASPL0000006917 AN10821 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4N005 MGG_06169 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
WB|WBGene00010661 tyr-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G5EHG8 MGCH7_ch7g109 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|B1VTI5 griF "O-aminophenol oxidase" [Streptomyces griseus subsp. griseus NBRC 13350 (taxid:455632)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P43311PPO_VITVI1, ., 1, 0, ., 3, ., 10.55310.98130.9555yesno
Q06215PPO_VICFA1, ., 1, 0, ., 3, ., 10.57060.94410.9207N/Ano
Q9FRX6AS1_ANTMA1, ., 2, 1, ., 3, ., 60.56960.91530.9626N/Ano
Q9MB14PPO2_IPOBA1, ., 1, 0, ., 3, ., 10.55330.89000.8945N/Ano
Q6UIL3LAHY_LARTR1, ., 1, 4, ., 9, 9, ., 4, 70.52470.94580.9571N/Ano
Q9ZP19PPO1_IPOBA1, ., 1, 0, ., 3, ., 10.54920.80370.9576N/Ano
P43309PPO_MALDO1, ., 1, 0, ., 3, ., 10.65870.92890.9258N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.18.1LOW CONFIDENCE prediction!
3rd Layer1.10.3.10.991
3rd Layer1.10.30.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
pfam12143131 pfam12143, PPO1_KFDV, Protein of unknown function 9e-71
pfam00264209 pfam00264, Tyrosinase, Common central domain of ty 1e-40
pfam1214254 pfam12142, PPO1_DWL, Polyphenol oxidase middle dom 5e-29
>gnl|CDD|221439 pfam12143, PPO1_KFDV, Protein of unknown function (DUF_B2219) Back     alignment and domain information 
 Score =  223 bits (571), Expect = 9e-71
 Identities = 85/131 (64%), Positives = 104/131 (79%), Gaps = 2/131 (1%)

Query: 460 FPIVLDRVISTVVPRPKKSRSKKEKEEEEEVLVVDNIEFERDARVKFDVYINEDEDEMPI 519
           FP+ LD+ +S  V RPKKSRS+KEKEEEEEVLV++ IEF+ +  VKFDV++N  EDE  +
Sbjct: 1   FPLTLDKTVSVEVTRPKKSRSRKEKEEEEEVLVIEGIEFDDNVYVKFDVFVNVPEDEKAV 60

Query: 520 GPDNSEFAGSFVNVPHKHKHG--KKMKTSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKG 577
           GPD +EFAGSFVNVPHK      KK+KTSLRLG+TDLLEDLGAEDDDSV+VTLVP++G  
Sbjct: 61  GPDKAEFAGSFVNVPHKVHKEGKKKIKTSLRLGITDLLEDLGAEDDDSVVVTLVPRYGGD 120

Query: 578 LARIGGIKIDF 588
              IGG+ I+ 
Sbjct: 121 SVTIGGVSIEL 131

This domain family is found in eukaryotes, and is typically between 138 and 152 amino acids in length. and the family is found in association with pfam00264. Many members are plant or plastid polyphenol oxidases, and there is a highly conserved sequence motif: KFDV, from which the name derives. This is the C-terminal domain of these oxidases. Length = 131
>gnl|CDD|215827 pfam00264, Tyrosinase, Common central domain of tyrosinase Back     alignment and domain information
>gnl|CDD|204834 pfam12142, PPO1_DWL, Polyphenol oxidase middle domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 591
PF12143130 PPO1_KFDV: Protein of unknown function (DUF_B2219) 100.0
PF00264223 Tyrosinase: Common central domain of tyrosinase; I 100.0
PF1214254 PPO1_DWL: Polyphenol oxidase middle domain; InterP 99.68
PF14830103 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1 95.47
PF00372278 Hemocyanin_M: Hemocyanin, copper containing domain 85.83
>PF12143 PPO1_KFDV: Protein of unknown function (DUF_B2219); InterPro: IPR022740 This domain represents the C terminus of polyphenol oxidases Back     alignment and domain information 
Probab=100.00  E-value=1.1e-41  Score=311.19  Aligned_cols=129  Identities=70%  Similarity=1.086  Sum_probs=121.3

Q ss_pred             cccccCcceEEEeeCCccccccccccccceEEEEeeeeecCCcceEEEEEEcCCCCCCCCCCCCccceeeeecccCCCcC
Q 042556          460 FPIVLDRVISTVVPRPKKSRSKKEKEEEEEVLVVDNIEFERDARVKFDVYINEDEDEMPIGPDNSEFAGSFVNVPHKHKH  539 (591)
Q Consensus       460 fp~~L~~~~~~~V~rp~~~rs~~~k~~~eevLviegi~~~~~~~v~fdVfvn~~~~~~~~~~~~~efaGsf~~~ph~~~~  539 (591)
                      ||+.||+++++.|+||+++|+++||+++|||||||||+++.+.++|||||||+++++...+++++||||||+++||.|++
T Consensus         1 fP~~Ld~~v~~~V~RP~~~rs~~ek~~~EEVLvIegIe~d~~~~vkFDVfvN~~~~~~~~~~~~~EfaGSF~~vpH~~~~   80 (130)
T PF12143_consen    1 FPLTLDKTVSVEVKRPKKSRSKKEKEEEEEVLVIEGIEIDDDVYVKFDVFVNVPEDDKPSGPDCAEFAGSFVNVPHKHHK   80 (130)
T ss_pred             CCeeccceeEEEEeCCccccccccccCceEEEEEccEEecCCcceEEEEEEecccccCCCCCcceEEEEEEeeccCcccC
Confidence            89999999999999999999999999999999999999999999999999995555566689999999999999999665


Q ss_pred             C-CccceEEEEechHHHHHhCCCCCCceEEEEeecCCCCeeEEceEEEEE
Q 042556          540 G-KKMKTSLRLGLTDLLEDLGAEDDDSVIVTLVPKFGKGLARIGGIKIDF  588 (591)
Q Consensus       540 ~-~~~~~~~~l~it~~L~~l~a~~~~~v~VtLVp~~g~~~v~i~~i~i~~  588 (591)
                      + ++.++++||||||+|||||+++|++|+||||||+|++.|+|+|+||+|
T Consensus        81 ~~~~~~t~~rlgitdlLedLga~~d~sIvVTLVPr~g~~~v~i~g~~Ie~  130 (130)
T PF12143_consen   81 GKKKMKTSLRLGITDLLEDLGAEDDDSIVVTLVPRGGGDPVTIGGIKIEY  130 (130)
T ss_pred             CCccceeEEEEEhhHHHHHhCCCCCCEEEEEEEEccCCCeEEEeeEEEeC
Confidence            4 558999999999999999999999999999999999999999999997

This region is primarily found in eukaryotes, although a few bacterial members also exist. It is typically between 138 and 152 amino acids in length and the family is found in association with PF00264 from PFAM and PF12142 from PFAM. Many members are plant or plastid polyphenol oxidases, and there is a highly conserved KFDV sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process
>PF00264 Tyrosinase: Common central domain of tyrosinase; InterPro: IPR002227 Tyrosinase (1 Back     alignment and domain information
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length Back     alignment and domain information
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A Back     alignment and domain information
>PF00372 Hemocyanin_M: Hemocyanin, copper containing domain; InterPro: IPR000896 Haemocyanins are copper-containing oxygen transport proteins found in the haemolymph of many invertebrates Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
2p3x_A339 Crystal Structure Of Grenache (Vitis Vinifera) Poly 1e-126
1bt1_A345 Catechol Oxidase From Ipomoea Batatas (Sweet Potato 1e-117
4hd4_A303 Crystal Structure Of Tyrosinase From Bacillus Megat 5e-07
3nm8_A303 Crystal Structure Of Tyrosinase From Bacillus Megat 3e-06
3nq5_A303 Crystal Structure Of Tyrosinase From Bacillus Megat 3e-06
4hd7_A303 Crystal Structure Of Tyrosinase From Bacillus Megat 5e-06
1lnl_A408 Structure Of Deoxygenated Hemocyanin From Rapana Th 8e-06
1js8_A394 Structure Of A Functional Unit From Octopus Hemocya 1e-05
3l6w_A491 Structure Of The Collar Functional Unit (Klh1-H) Of 3e-05
>pdb|2P3X|A Chain A, Crystal Structure Of Grenache (Vitis Vinifera) Polyphenol Oxidase Length = 339 Back     alignment and structure 
Iteration: 1

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/340 (62%), Positives = 254/340 (74%), Gaps = 8/340 (2%)
Query: 89  APVSAPDISKCGKA----DTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIA 144
           AP+ APDISKCG A      T  NCCPP +T II+F+LP S S +R RPAAHL    Y+A
Sbjct: 1   APIQAPDISKCGTATVPDGVTPTNCCPPVTTKIIDFQLPSSGSPMRTRPAAHLVSKEYLA 60
Query: 145 KYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYY 204
           KY KAIEL KALP DDPRSF  QANVHC YC GAYDQVG+ +L+LQ+H SWLF PFHRYY
Sbjct: 61  KYKKAIELQKALPDDDPRSFKQQANVHCTYCQGAYDQVGYTDLELQVHASWLFLPFHRYY 120
Query: 205 LYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDL 264
           LYF E+IL KLIDDPTFALP+W WD+P GM MP ++A+  S LYD+ RNA H PPT++DL
Sbjct: 121 LYFNERILAKLIDDPTFALPYWAWDNPDGMYMPTIYASSPSSLYDEKRNAKHLPPTVIDL 180
Query: 265 DYNEXXXXXXXXXXXXISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAP 324
           DY+              + NL IMY+Q+VS   T KLFLG PYRAGD  +PG+G++E+AP
Sbjct: 181 DYDGTEPTIPDDELK--TDNLAIMYKQIVSGATTPKLFLGYPYRAGDAIDPGAGTLEHAP 238
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGK-RTNFTEPD 383
           HN VH W G   +P+ E+MGNFY+AGRDPIFF HH+N+DRMW IW+T+GGK R +FT+ D
Sbjct: 239 HNIVHKWTGLADKPS-EDMGNFYTAGRDPIFFGHHANVDRMWNIWKTIGGKNRKDFTDTD 297
Query: 384 WLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPW 423
           WLD+ F+FYDEN  LV+VKV DC+DT  L Y YQD+ IPW
Sbjct: 298 WLDATFVFYDENKQLVKVKVSDCVDTSKLRYQYQDIPIPW 337
>pdb|1BT1|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In The Native Cu(Ii)-Cu(Ii) State Length = 345 Back     alignment and structure
>pdb|4HD4|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium V218f Mutant Length = 303 Back     alignment and structure
>pdb|3NM8|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium Length = 303 Back     alignment and structure
>pdb|3NQ5|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium R209h Mutant Length = 303 Back     alignment and structure
>pdb|4HD7|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium V218g Mutant Soaked In Cuso4 Length = 303 Back     alignment and structure
>pdb|1LNL|A Chain A, Structure Of Deoxygenated Hemocyanin From Rapana Thomasiana Length = 408 Back     alignment and structure
>pdb|1JS8|A Chain A, Structure Of A Functional Unit From Octopus Hemocyanin Length = 394 Back     alignment and structure
>pdb|3L6W|A Chain A, Structure Of The Collar Functional Unit (Klh1-H) Of Keyhole Limpet Hemocyanin Length = 491 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
1bt3_A345 Protein (catechol oxidase); dicopper enzyme, oxido 1e-123
2p3x_A339 Polyphenol oxidase, chloroplast; grenache grapes, 1e-122
3nm8_A303 Tyrosinase; TYPE3 copper proteins, oxidoreductase; 4e-70
2y9w_A391 Tyrosinase, polyphenol oxidase; oxidoreductase, co 2e-68
3l6w_A491 Hemocyanin 1; cupredoxin domain, copper-binding pr 5e-63
1js8_A394 Hemocyanin; glycoprotein, mollusc, oxygen-transpor 6e-60
3awu_A281 Tyrosinase; tyrosinase, binary complex, type-3 cop 4e-59
1lnl_A408 Hemocyanin; deoxygenated form, oxygen, metal bindi 5e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A {Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A 1bug_A* Length = 345 Back     alignment and structure
 Score =  365 bits (938), Expect = e-123
 Identities = 197/348 (56%), Positives = 254/348 (72%), Gaps = 11/348 (3%)

Query: 89  APVSAPDISKCGKA------DTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAY 142
           AP+ AP+ISKC             DNCCPP ++NI+++KLP   ++++VRPAAH  D   
Sbjct: 1   APIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPA-VTTMKVRPAAHTMDKDA 59

Query: 143 IAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHR 202
           IAK++KA+ELMKALPADDPR+F  QA VHCAYC+G YDQV FP+ ++Q+HNSWLFFPFHR
Sbjct: 60  IAKFAKAVELMKALPADDPRNFYQQALVHCAYCNGGYDQVNFPDQEIQVHNSWLFFPFHR 119

Query: 203 YYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLL 262
           +YLYFYE+ILGKLI DP+F LPFWNWD+P GM +P    +  S LYD  RN +H PP ++
Sbjct: 120 WYLYFYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLNDSTSSLYDSNRNQSHLPPVVV 179

Query: 263 DLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIEN 322
           DL YN  D D   T + +I+ NL +MY+QMV+N  T++LFLG  YRAGD P PG+GSIE 
Sbjct: 180 DLGYNGADTD--VTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRAGDAPSPGAGSIET 237

Query: 323 APHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGK--RTNFT 380
           +PH P+H W GD    N E+MGNFYSAGRD  F+ HHSN+DRMWTIW+ L GK  + ++T
Sbjct: 238 SPHIPIHRWVGDPRNTNNEDMGNFYSAGRDIAFYCHHSNVDRMWTIWQQLAGKPRKRDYT 297

Query: 381 EPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKP 428
           + DWL++ FLFYDEN   V+V++ D LD + +GY Y    +PW +SKP
Sbjct: 298 DSDWLNATFLFYDENGQAVKVRIGDSLDNQKMGYKYAKTPLPWLDSKP 345
>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera} Length = 339 Back     alignment and structure
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 3nq5_A Length = 303 Back     alignment and structure
>2y9w_A Tyrosinase, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_A Length = 391 Back     alignment and structure
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A Length = 491 Back     alignment and structure
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether bond, OXY storage-transport complex; HET: NDG NAG BMA MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1 Length = 394 Back     alignment and structure
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A 2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A 3aww_A 3awx_A 3awy_A ... Length = 281 Back     alignment and structure
>1lnl_A Hemocyanin; deoxygenated form, oxygen, metal binding site, cooperativity, oxygen storage-transport complex; HET: NAG; 3.30A {Rapana thomasiana} SCOP: a.86.1.1 b.112.1.1 Length = 408 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
1bt3_A345 Protein (catechol oxidase); dicopper enzyme, oxido 100.0
2p3x_A339 Polyphenol oxidase, chloroplast; grenache grapes, 100.0
1lnl_A408 Hemocyanin; deoxygenated form, oxygen, metal bindi 100.0
1js8_A394 Hemocyanin; glycoprotein, mollusc, oxygen-transpor 100.0
3l6w_A 491 Hemocyanin 1; cupredoxin domain, copper-binding pr 100.0
2y9w_A391 Tyrosinase, polyphenol oxidase; oxidoreductase, co 100.0
3nm8_A303 Tyrosinase; TYPE3 copper proteins, oxidoreductase; 100.0
3awu_A281 Tyrosinase; tyrosinase, binary complex, type-3 cop 100.0
3ixv_A626 Hemocyanin AA6 chain; HC, phenolxoidase activity, 93.11
3hhs_A694 Propo-P2, phenoloxidase subunit 2; alpha helix, be 92.47
1hc1_A657 Arthropodan hemocyanin; oxygen transport; 3.20A {P 92.33
3hhs_B684 Propo-P1, phenoloxidase subunit 1; alpha helix, be 92.31
1lla_A628 Hemocyanin (subunit type II); oxygen transport; 2. 91.95
3gwj_A674 Arylphorin; mono-glucosylated N-glycan, stability, 91.04
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A {Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A 1bug_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-89  Score=723.20  Aligned_cols=337  Identities=59%  Similarity=1.181  Sum_probs=310.4

Q ss_pred             CCCCCCCCCCC--CCCCC----CCCCCCCCCCCCcccccCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHcCCCCCCC
Q 042556           89 APVSAPDISKC--GKADT----TTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPR  162 (591)
Q Consensus        89 ~p~~~p~~~~c--~~~~~----~~~~ccpp~~~~~~~f~~p~~~~~~rvRr~~~~ls~~e~~~Y~~Av~~mk~lP~~dp~  162 (591)
                      +||++|||++|  +++++    .+++||||+.++|+||+||+. .+++|||||++|+++|+++|++||+|||++|+.+++
T Consensus         1 ~~~~~~~~~~c~~~~~~~~~~~~~~~~cp~~~~~~~~~~~p~~-~~~~VRre~~~Ls~~er~~yi~Av~~l~~~p~~~~~   79 (345)
T 1bt3_A            1 APIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPAV-TTMKVRPAAHTMDKDAIAKFAKAVELMKALPADDPR   79 (345)
T ss_dssp             CCCCCCCGGGCCSSCTTCCTTCSCSCCCCCCCSSEEECCCCCC-SSCEEECBGGGCCHHHHHHHHHHHHHHHTSCTTSTT
T ss_pred             CCCCCCChhhccCCCCCCCCCCCccCCCCCCCCCCccccCCCC-CCCceecChhhCCHHHHHHHHHHHHHHHhcCCCCCc
Confidence            69999999999  98887    458999998899999999988 799999999999999999999999999999999999


Q ss_pred             chhccccccccccCCCccCCCCCCccccccCcccccchhhhhHHHHHHHHhhhcCCCCCCcccccCCCCCCCCCCCCccC
Q 042556          163 SFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFAN  242 (591)
Q Consensus       163 S~~q~A~IH~~yc~g~y~~~g~~~~~~~iH~s~~FlPWHR~YL~~fEriLr~~~gd~tfaLPYWDW~~~~g~~iP~~f~~  242 (591)
                      ||+++|+||+.||+++|++.||++.++|+|++++||||||+||++||++||++|||++|+||||||+.+.++.+|++|++
T Consensus        80 s~~~~a~iH~~~~~~~~~~~g~~~~~~~~H~~~~Fl~wHR~~l~~~E~~L~~~~g~~~~~lPYWdw~~d~~~~lP~~f~~  159 (345)
T 1bt3_A           80 NFYQQALVHCAYCNGGYDQVNFPDQEIQVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLND  159 (345)
T ss_dssp             SHHHHHHHHHHHHTTCCEETTEEEEECCCSSSTTHHHHHHHHHHHHHHHHHHHHTCTTCCCCBCCTTSGGGSSCCGGGGC
T ss_pred             cHHHhhhhhcccccccccccccccccceeecCcccccchHHHHHHHHHHHHHHhCCCCcCceeeccccccCccCCccccC
Confidence            99999999999999999998899999999999999999999999999999999999999999999999988999999999


Q ss_pred             CCCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCcccccchhhHHHHhhhcCCCccccccCCccCCCCCCCCCCCcccc
Q 042556          243 PNSPLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIEN  322 (591)
Q Consensus       243 ~~SPLyd~~r~~~~~pp~~~d~~~~g~~~~~~~~~~~~i~~Nl~~my~q~vs~a~~~~~F~g~~y~~g~~~~~g~gslE~  322 (591)
                      +.||||++.|+..+.+++++|++|+|.+.  +....+++.+|+..||+|+++++.+...|++++|+.+++...+.+++|.
T Consensus       160 ~~spl~~~~~~~~~~~~~v~d~~f~g~~~--~~~~~~~l~~nl~~~~~~~~~~~~~~~~F~~~p~~~~~~~~~~~~~lE~  237 (345)
T 1bt3_A          160 STSSLYDSNRNQSHLPPVVVDLGYNGADT--DVTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRAGDAPSPGAGSIET  237 (345)
T ss_dssp             TTSTTCCSSSCGGGSTTSCCCTTCCSCCC--CCCHHHHHHHHHHHHHHHHTTTCSSHHHHHCCCCCTTCCSCCCCCHHHH
T ss_pred             CCCCcccCCCCccCCCCceecCCcCCCCC--CCCcccccccchHHHHHHHHhcCCchHHhhcCCccccccccccccchhh
Confidence            89999999998888888999999998765  4445577889999999999998888999999999988776666899998


Q ss_pred             cccccccccccCCCCCCCCCCCCCccCCCCcchhhhhhhhhhHHHHHHHcCCC--CCCCCCCCccCccccccccCCcccc
Q 042556          323 APHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGK--RTNFTEPDWLDSAFLFYDENANLVR  400 (591)
Q Consensus       323 ~pHn~VH~~vGg~~~~~~GdMg~~~sAa~DPIF~lHHaNVDRLW~iWQ~l~~~--r~d~td~dwl~s~f~f~d~~~~~v~  400 (591)
                      ++||.||.||||+.++++|+|+++++|++|||||+|||||||||++||++++.  +.++++++|++++|.|||+++++++
T Consensus       238 ~~H~~vH~~vGg~~~~~~g~M~~~~~s~~DPiF~lHH~~iDrlw~~Wq~~~~~~~~~~~~~~~~l~~~~~f~d~~~~~~~  317 (345)
T 1bt3_A          238 SPHIPIHRWVGDPRNTNNEDMGNFYSAGRDIAFYCHHSNVDRMWTIWQQLAGKPRKRDYTDSDWLNATFLFYDENGQAVK  317 (345)
T ss_dssp             TTHHHHHHHHSCTTSTTCTTTTSTTTGGGSTHHHHHHHHHHHHHHHHHHHC-----CCCCCHHHHTCEEEEECTTSCEEE
T ss_pred             cccchhhheeccCCCCCCCcCcCcccCCCcchHHhhhhhHHHHHHHHHHhCCccccCCCCCCccccCcccccCCCCCcCc
Confidence            89999999999988899999999999999999999999999999999999984  6789999999999999999999999


Q ss_pred             cccccccccCCCceecCCCCCCccCCCC
Q 042556          401 VKVRDCLDTKNLGYVYQDVEIPWQNSKP  428 (591)
Q Consensus       401 ~tvrDvldt~~LgY~Y~~~~~pw~~~~p  428 (591)
                      +|++||||+++|||+|+++++||+++||
T Consensus       318 ~~v~Dvldt~~lcY~Y~~~~~pw~~~~~  345 (345)
T 1bt3_A          318 VRIGDSLDNQKMGYKYAKTPLPWLDSKP  345 (345)
T ss_dssp             EEGGGCSCHHHHTEEECCCCCTTC----
T ss_pred             CCHHHHhccccCCeeeCCCCCccccCCC
Confidence            9999999999999999999999999886
>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera} Back     alignment and structure
>1lnl_A Hemocyanin; deoxygenated form, oxygen, metal binding site, cooperativity, oxygen storage-transport complex; HET: NAG; 3.30A {Rapana thomasiana} SCOP: a.86.1.1 b.112.1.1 Back     alignment and structure
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether bond, OXY storage-transport complex; HET: NDG NAG BMA MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1 Back     alignment and structure
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A Back     alignment and structure
>2y9w_A Tyrosinase, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_A Back     alignment and structure
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A Back     alignment and structure
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A 2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A 3aww_A 3awx_A 3awy_A ... Back     alignment and structure
>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A Back     alignment and structure
>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Back     alignment and structure
>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A* Back     alignment and structure
>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Back     alignment and structure
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A 1ll1_A 1oxy_A Back     alignment and structure
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 591
d1bt3a_341 a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipom 1e-140
d1lnla1307 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca ( 6e-57
d1js8a1289 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant o 7e-57
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Length = 341 Back     information, alignment and structure

class: All alpha proteins
fold: Di-copper centre-containing domain
superfamily: Di-copper centre-containing domain
family: Catechol oxidase
domain: Catechol oxidase
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

 Score =  407 bits (1046), Expect = e-140
 Identities = 194/343 (56%), Positives = 250/343 (72%), Gaps = 11/343 (3%)

Query: 89  APVSAPDISKCGKA------DTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAY 142
           AP+ AP+ISKC             DNCCPP ++NI+++KLP   ++++VRPAAH  D   
Sbjct: 1   APIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPA-VTTMKVRPAAHTMDKDA 59

Query: 143 IAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHR 202
           IAK++KA+ELMKALPADDPR+F  QA VHCAYC+G YDQV FP+ ++Q+HNSWLFFPFHR
Sbjct: 60  IAKFAKAVELMKALPADDPRNFYQQALVHCAYCNGGYDQVNFPDQEIQVHNSWLFFPFHR 119

Query: 203 YYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLL 262
           +YLYFYE+ILGKLI DP+F LPFWNWD+P GM +P    +  S LYD  RN +H PP ++
Sbjct: 120 WYLYFYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLNDSTSSLYDSNRNQSHLPPVVV 179

Query: 263 DLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIEN 322
           DL YN  D D   T + +I+ NL +MY+QMV+N  T++LFLG  YRAGD P PG+GSIE 
Sbjct: 180 DLGYNGADTD--VTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRAGDAPSPGAGSIET 237

Query: 323 APHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGK--RTNFT 380
           +PH P+H W GD    N E+MGNFYSAGRD  F+ HHSN+DRMWTIW+ L GK  + ++T
Sbjct: 238 SPHIPIHRWVGDPRNTNNEDMGNFYSAGRDIAFYCHHSNVDRMWTIWQQLAGKPRKRDYT 297

Query: 381 EPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPW 423
           + DWL++ FLFYDEN   V+V++ D LD + +GY Y    +PW
Sbjct: 298 DSDWLNATFLFYDENGQAVKVRIGDSLDNQKMGYKYAKTPLPW 340
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]} Length = 307 Back     information, alignment and structure
>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]} Length = 289 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
d1bt3a_341 Catechol oxidase {Sweet potato (Ipomoea batatas) [ 100.0
d1js8a1289 Mollusc hemocyanin {Giant octopus (Octopus doflein 100.0
d1lnla1307 Mollusc hemocyanin {Mollusca (Rapana thomasiana) [ 100.0
d1lnla2101 C-terminal domain of mollusc hemocyanin {Mollusca 95.71
d1js8a2101 C-terminal domain of mollusc hemocyanin {Giant oct 95.59
d1hc1a2263 Arthropod hemocyanin {Spiny lobster (Panulirus int 91.27
d1llaa2270 Arthropod hemocyanin {Horseshoe crab (Limulus poly 86.67
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Back     information, alignment and structure
class: All alpha proteins
fold: Di-copper centre-containing domain
superfamily: Di-copper centre-containing domain
family: Catechol oxidase
domain: Catechol oxidase
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=100.00  E-value=1.1e-93  Score=752.92  Aligned_cols=333  Identities=59%  Similarity=1.177  Sum_probs=311.2

Q ss_pred             CCCCCCCCCCCCC--CCC----CCCCCCCCCCCCcccccCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHcCCCCCCC
Q 042556           89 APVSAPDISKCGK--ADT----TTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIAKYSKAIELMKALPADDPR  162 (591)
Q Consensus        89 ~p~~~p~~~~c~~--~~~----~~~~ccpp~~~~~~~f~~p~~~~~~rvRr~~~~ls~~e~~~Y~~Av~~mk~lP~~dp~  162 (591)
                      |||++|||++|+.  +++    .+.+||||.+++|+||++|+. +++||||++|+|+++|++||++||++||+||.+||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~rvR~~~~~~~~~~~~~y~~Av~~m~~lp~~Dp~   79 (341)
T d1bt3a_           1 APIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPAV-TTMKVRPAAHTMDKDAIAKFAKAVELMKALPADDPR   79 (341)
T ss_dssp             CCCCCCCGGGCCSSCTTCCTTCSCSCCCCCCCSSEEECCCCCC-SSCEEECBGGGCCHHHHHHHHHHHHHHHTSCTTSTT
T ss_pred             CCCCCCCcccCCCCcccCCCCCCcCCcCCCCCCCcccccCCCC-CCcccccchhhCCHHHHHHHHHHHHHHHcCCCCCcc
Confidence            7999999999964  566    568999999999999999987 699999999999999999999999999999999999


Q ss_pred             chhccccccccccCCCccCCCCCCccccccCcccccchhhhhHHHHHHHHhhhcCCCCCCcccccCCCCCCCCCCCCccC
Q 042556          163 SFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFAN  242 (591)
Q Consensus       163 S~~q~A~IH~~yc~g~y~~~g~~~~~~~iH~s~~FlPWHR~YL~~fEriLr~~~gd~tfaLPYWDW~~~~g~~iP~~f~~  242 (591)
                      ||+|||+|||+||+|+|.+.|+++.++|+|++|+||||||+||++|||+||++|||++|+||||||+.+.++.+|.+|.+
T Consensus        80 S~~~~A~iH~~~c~~~~~~~~~~~~~~~iH~~~~FlpWHR~YL~~fE~~Lr~~~g~~~falPYWDW~~~~~~~~p~~~~~  159 (341)
T d1bt3a_          80 NFYQQALVHCAYCNGGYDQVNFPDQEIQVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLND  159 (341)
T ss_dssp             SHHHHHHHHHHHHTTCCEETTEEEEECCCSSSTTHHHHHHHHHHHHHHHHHHHHTCTTCCCCBCCTTSGGGSSCCGGGGC
T ss_pred             cHHHHHhhhCccCCCccccccCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCCCCCCcCCCCCccCCCCchhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCcccccchhhHHHHhhhcCCCccccccCCccCCCCCCCCCCCcccc
Q 042556          243 PNSPLYDKLRNANHQPPTLLDLDYNETDDDQTTTKKDQISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIEN  322 (591)
Q Consensus       243 ~~SPLyd~~r~~~~~pp~~~d~~~~g~~~~~~~~~~~~i~~Nl~~my~q~vs~a~~~~~F~g~~y~~g~~~~~g~gslE~  322 (591)
                      ..++||+..|+..+.++.+++..+++.+.  .....+....|+..|++++++++.+..+|.+.+|+.+...+.+.+.+|.
T Consensus       160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  237 (341)
T d1bt3a_         160 STSSLYDSNRNQSHLPPVVVDLGYNGADT--DVTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRAGDAPSPGAGSIET  237 (341)
T ss_dssp             TTSTTCCSSSCGGGSTTSCCCTTCCSCCC--CCCHHHHHHHHHHHHHHHHTTTCSSHHHHHCCCCCTTCCSCCCCCHHHH
T ss_pred             CCCCCcCCCCCCCCCCCccCCCCcCCCcc--cCCccccccccccccccccccCCCchhhhhcchhhcccCCCCCccceee
Confidence            99999999999988888888988887765  5555666788999999999999999999999999988877777899999


Q ss_pred             cccccccccccCCCCCCCCCCCCCccCCCCcchhhhhhhhhhHHHHHHHcCCC--CCCCCCCCccCccccccccCCcccc
Q 042556          323 APHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGK--RTNFTEPDWLDSAFLFYDENANLVR  400 (591)
Q Consensus       323 ~pHn~VH~~vGg~~~~~~GdMg~~~sAa~DPIF~lHHaNVDRLW~iWQ~l~~~--r~d~td~dwl~s~f~f~d~~~~~v~  400 (591)
                      .+||.||+||||..++++|+|+++++||+|||||||||||||||++||+++++  ++++++++|++++|.|||+++++++
T Consensus       238 ~pHn~vH~~vGG~~~~~~~~M~~~~~Sa~DPIF~lHHanIDRlW~~WQ~l~~~~~~~~~~~~~~ln~~f~f~d~~~~~~~  317 (341)
T d1bt3a_         238 SPHIPIHRWVGDPRNTNNEDMGNFYSAGRDIAFYCHHSNVDRMWTIWQQLAGKPRKRDYTDSDWLNATFLFYDENGQAVK  317 (341)
T ss_dssp             TTHHHHHHHHSCTTSTTCTTTTSTTTGGGSTHHHHHHHHHHHHHHHHHHHC-----CCCCCHHHHTCEEEEECTTSCEEE
T ss_pred             eccccceeEeccCCCCCCCCccccccCCCChhHHHHHhhHHHHHHHHHHhcCCCCCCCCCCcccccCCcCccCCCCcccc
Confidence            99999999999988888899999999999999999999999999999999876  5689999999999999999999999


Q ss_pred             cccccccccCCCceecCCCCCCcc
Q 042556          401 VKVRDCLDTKNLGYVYQDVEIPWQ  424 (591)
Q Consensus       401 ~tvrDvldt~~LgY~Y~~~~~pw~  424 (591)
                      +|++||+|+++|||+|+++++|||
T Consensus       318 ~t~~d~ld~~~LgY~Y~~~~~pw~  341 (341)
T d1bt3a_         318 VRIGDSLDNQKMGYKYAKTPLPWL  341 (341)
T ss_dssp             EEGGGCSCHHHHTEEECCCCCTTC
T ss_pred             cCHHHcccccccCccCCCCCCCCC
Confidence            999999999999999999999997
>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]} Back     information, alignment and structure
>d1lnla2 b.112.1.1 (A:305-405) C-terminal domain of mollusc hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]} Back     information, alignment and structure
>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]} Back     information, alignment and structure
>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster (Panulirus interruptus) [TaxId: 6735]} Back     information, alignment and structure
>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]} Back     information, alignment and structure